AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029885.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029885.01.T01 MTR_5g094250 97.288 295 8 0 1 295 1 295 0.0 594
MsG0580029885.01.T01 MTR_5g094250 96.444 225 8 0 71 295 1 225 3.86e-162 450
MsG0580029885.01.T01 MTR_7g405830 64.561 285 99 2 5 288 8 291 1.07e-140 398
MsG0580029885.01.T01 MTR_7g405830 61.644 219 82 2 71 288 1 218 4.92e-102 298
MsG0580029885.01.T01 MTR_5g094260 86.486 37 5 0 130 166 7 43 2.33e-14 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029885.01.T01 AT1G50590 69.024 297 80 6 9 293 13 309 1.51e-145 411
MsG0580029885.01.T01 AT2G43120 64.912 285 94 4 9 288 37 320 4.00e-136 388
MsG0580029885.01.T01 AT2G43120 64.912 285 94 4 9 288 88 371 1.39e-135 389
MsG0580029885.01.T01 AT3G59220 60.211 284 110 3 3 284 4 286 1.12e-127 365
MsG0580029885.01.T01 AT3G59260 58.397 262 106 3 29 288 10 270 5.67e-111 322
MsG0580029885.01.T01 AT1G50590 66.383 235 67 6 71 293 1 235 3.99e-105 306
MsG0580029885.01.T01 AT1G50590 66.383 235 67 6 71 293 1 235 3.99e-105 306

Find 72 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCACCATATTCTCCTTCT+AGG 0.190546 5:+103396897 MsG0580029885.01.T01:CDS
ATATTCTCCTTCTAGGGTTT+GGG 0.195683 5:+103396904 MsG0580029885.01.T01:CDS
TAAGGTACTTAGATTCATTT+TGG 0.218837 5:+103396956 MsG0580029885.01.T01:CDS
ATTGCAGTTGCTGCTCCTTC+TGG 0.238885 5:+103392237 MsG0580029885.01.T01:intron
CATATTCTCCTTCTAGGGTT+TGG 0.239309 5:+103396903 MsG0580029885.01.T01:CDS
ACAAAAGCATTCCAAGATTT+AGG 0.257316 5:-103396819 None:intergenic
AAGGACACCAACAATGTATT+TGG 0.265531 5:+103396755 MsG0580029885.01.T01:CDS
TTTCAAAATCATCAATAGTT+TGG 0.292160 5:-103397052 None:intergenic
GTTGGTGTCCTTGTGTAAAT+TGG 0.300200 5:-103396744 None:intergenic
CTTTGATCCTTTCCTTGTCT+TGG 0.309535 5:+103392088 MsG0580029885.01.T01:CDS
GGTGAACCAGTGGTACAATT+TGG 0.321553 5:+103396996 MsG0580029885.01.T01:CDS
TCCATAGCTGAAGACCCTTT+TGG 0.325936 5:-103392887 None:intergenic
CTTGTCTTGGATGAATTCTC+AGG 0.328315 5:+103392101 MsG0580029885.01.T01:CDS
GACTGTTACATATATGTTAC+AGG 0.342168 5:+103392397 MsG0580029885.01.T01:CDS
TGTACCACTGGTTCACCTAA+TGG 0.346663 5:-103396990 None:intergenic
AACAACTTGTACCTAAATCT+TGG 0.371893 5:+103396808 MsG0580029885.01.T01:CDS
AACACCTTCTCGTTGAGGTT+TGG 0.376609 5:-103391747 None:intergenic
CTTAAAATTTCTTGATACCT+TGG 0.380826 5:-103396645 None:intergenic
GGCATGGAATAAATCTTCTA+AGG 0.381331 5:+103396938 MsG0580029885.01.T01:CDS
AGAATATGGTGAGAGGTTGT+AGG 0.381943 5:-103396888 None:intergenic
CAAACCCTAGAAGGAGAATA+TGG 0.383421 5:-103396902 None:intergenic
CTCACCATATTCTCCTTCTA+GGG 0.397432 5:+103396898 MsG0580029885.01.T01:CDS
TTGGTTGGAGGTGAACCATT+AGG 0.400283 5:+103396975 MsG0580029885.01.T01:CDS
GACCATCCCCAAACCCTAGA+AGG 0.410425 5:-103396911 None:intergenic
ATCAAGGTTAGAGTTATTGC+AGG 0.438508 5:+103396699 MsG0580029885.01.T01:CDS
AAACCTCTATGTGGATGATC+AGG 0.442625 5:-103392264 None:intergenic
CTCCTTCTAGGGTTTGGGGA+TGG 0.442815 5:+103396909 MsG0580029885.01.T01:CDS
AGTTGTTGCAAGTGTGCTCC+AGG 0.450715 5:-103396792 None:intergenic
TGCTTCTCAAGGAATCCAAA+AGG 0.469643 5:+103392872 MsG0580029885.01.T01:CDS
GTAAAGTCCAAATACATTGT+TGG 0.470223 5:-103396762 None:intergenic
CATTGGAGGTCTAGTGCAGT+TGG 0.481780 5:+103397104 MsG0580029885.01.T01:CDS
GTTATTGCAGGGGAAGCCCT+TGG 0.483201 5:+103396711 MsG0580029885.01.T01:CDS
TATTCTCCTTCTAGGGTTTG+GGG 0.496199 5:+103396905 MsG0580029885.01.T01:CDS
AGGGTTTGGGGATGGTCTAG+AGG 0.507229 5:+103396917 MsG0580029885.01.T01:CDS
TCCAAAAGGGTCTTCAGCTA+TGG 0.512860 5:+103392886 MsG0580029885.01.T01:CDS
TCTTGAGTATTCATCACAAA+GGG 0.513505 5:-103397020 None:intergenic
AGCTACAAAAGATGGTATCA+AGG 0.515692 5:+103396683 MsG0580029885.01.T01:CDS
TTTCCTGATCATCCACATAG+AGG 0.519776 5:+103392261 MsG0580029885.01.T01:CDS
CAGTGGATGACTGCTGGTAG+AGG 0.520007 5:+103392828 MsG0580029885.01.T01:CDS
TCAGAAATGCCTGCTTCTCA+AGG 0.523119 5:+103392861 MsG0580029885.01.T01:CDS
GACTTGCAGTGGATGACTGC+TGG 0.525271 5:+103392822 MsG0580029885.01.T01:CDS
ATAGTAGAAGCTACAAAAGA+TGG 0.525308 5:+103396675 MsG0580029885.01.T01:CDS
GCTGTTGTTAGAAGAAGCAT+AGG 0.532597 5:+103391773 MsG0580029885.01.T01:CDS
TTGAGAAAGCAAAACATTGG+AGG 0.538050 5:+103397090 MsG0580029885.01.T01:CDS
GTGTACATATTGGAAGGAGA+GGG 0.549007 5:+103396840 MsG0580029885.01.T01:CDS
AATTCATCCAAGACAAGGAA+AGG 0.552804 5:-103392095 None:intergenic
GCTTCTCAAGGAATCCAAAA+GGG 0.554217 5:+103392873 MsG0580029885.01.T01:CDS
AACTTCCTTGTTACAAGACG+AGG 0.561406 5:-103391719 None:intergenic
CACAAGGGAACAATTGAAGC+TGG 0.563685 5:+103392798 MsG0580029885.01.T01:CDS
AATTGGTGACTTTATTCCAA+GGG 0.563921 5:-103396727 None:intergenic
AAGGGTCCAAATTGTACCAC+TGG 0.564406 5:-103397002 None:intergenic
AAACCTCAACGAGAAGGTGT+TGG 0.567835 5:+103391749 MsG0580029885.01.T01:CDS
TTGGACTTTACTCTTAAACC+TGG 0.568259 5:+103396774 MsG0580029885.01.T01:CDS
AAGAACCTCGTCTTGTAACA+AGG 0.573800 5:+103391714 MsG0580029885.01.T01:CDS
GCTCCAACACCTTCTCGTTG+AGG 0.574821 5:-103391752 None:intergenic
TGTGTACATATTGGAAGGAG+AGG 0.580651 5:+103396839 MsG0580029885.01.T01:CDS
AAATTGGTGACTTTATTCCA+AGG 0.583857 5:-103396728 None:intergenic
TTGGGGATGGTCTAGAGGCA+TGG 0.584787 5:+103396922 MsG0580029885.01.T01:CDS
AAACATGCCAAACCTCTATG+TGG 0.589515 5:-103392273 None:intergenic
TCAAGGTTAGAGTTATTGCA+GGG 0.591513 5:+103396700 MsG0580029885.01.T01:CDS
CTGAGAATTCATCCAAGACA+AGG 0.596269 5:-103392100 None:intergenic
TTGAAGCTGGTGACTTGCAG+TGG 0.601613 5:+103392811 MsG0580029885.01.T01:CDS
TTCTTGAGTATTCATCACAA+AGG 0.615017 5:-103397021 None:intergenic
TTAGCCAAACCTCAACGAGA+AGG 0.638457 5:+103391743 MsG0580029885.01.T01:CDS
TTGTTAGAAGAAGCATAGGA+AGG 0.658248 5:+103391777 MsG0580029885.01.T01:CDS
TAGAAGGAGAATATGGTGAG+AGG 0.664990 5:-103396895 None:intergenic
GGATGATCAGGAAATCCAGA+AGG 0.672225 5:-103392252 None:intergenic
AGTGGATGACTGCTGGTAGA+GGG 0.674024 5:+103392829 MsG0580029885.01.T01:CDS
GTTATGTTAGGATTGAACCA+AGG 0.685422 5:+103396628 MsG0580029885.01.T01:intron
CAAGGTTAGAGTTATTGCAG+GGG 0.693109 5:+103396701 MsG0580029885.01.T01:CDS
TGAACCATTAGGTGAACCAG+TGG 0.699437 5:+103396986 MsG0580029885.01.T01:CDS
TAAAGTCACCAATTTACACA+AGG 0.705581 5:+103396736 MsG0580029885.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTAAAAAAAAAAAT+TGG - Chr5:103395764-103395783 None:intergenic 0.0%
!! AATTAAAATATAAAATTTAA+TGG + Chr5:103394166-103394185 MsG0580029885.01.T01:intron 0.0%
!! AAGAAAAAATTTAGTAAATT+TGG + Chr5:103393604-103393623 MsG0580029885.01.T01:intron 10.0%
!! AATTAAAAAAAAAAATTGGA+AGG - Chr5:103395760-103395779 None:intergenic 10.0%
!! ATTAAAAAAAAAAATTGGAA+GGG - Chr5:103395759-103395778 None:intergenic 10.0%
!! TATTATTATGTTTAGAAAAT+AGG - Chr5:103396058-103396077 None:intergenic 10.0%
!!! AAAACAAAAAAATTTTTTAC+AGG - Chr5:103393841-103393860 None:intergenic 10.0%
!!! AAACAAAAAAATTTTTTACA+GGG - Chr5:103393840-103393859 None:intergenic 10.0%
!!! GTAAAAAATTTTTTTGTTTT+TGG + Chr5:103393841-103393860 MsG0580029885.01.T01:intron 10.0%
!! AAAAATTTAGTAAATTTGGA+CGG + Chr5:103393608-103393627 MsG0580029885.01.T01:intron 15.0%
!! AAGTTAAATAATAATAGAGT+TGG + Chr5:103393553-103393572 MsG0580029885.01.T01:intron 15.0%
!! TGAATGTATAATTACTAAAA+TGG + Chr5:103393333-103393352 MsG0580029885.01.T01:intron 15.0%
!! TGTTTAAAAAAAATACATGA+TGG - Chr5:103394846-103394865 None:intergenic 15.0%
!! TTAAAAAAAAAAATTGGAAG+GGG - Chr5:103395758-103395777 None:intergenic 15.0%
!! TTAGCTTAAAGAAAAATAAT+GGG + Chr5:103394136-103394155 MsG0580029885.01.T01:intron 15.0%
!!! AAAAAACAAAATATTTTGCA+GGG - Chr5:103393970-103393989 None:intergenic 15.0%
!!! AACAAAAAAATTTTTTACAG+GGG - Chr5:103393839-103393858 None:intergenic 15.0%
!!! AATAATAAGACATATTTTGT+TGG - Chr5:103391823-103391842 None:intergenic 15.0%
!!! AGAAAAAATAATCATTTTAG+TGG + Chr5:103393158-103393177 MsG0580029885.01.T01:intron 15.0%
!!! ATAAATTGCATTAAATGTTT+TGG + Chr5:103391995-103392014 MsG0580029885.01.T01:intron 15.0%
!!! CAAAAACAAAAAATTTTGTA+GGG - Chr5:103394001-103394020 None:intergenic 15.0%
!!! TAAAAAACAAAATATTTTGC+AGG - Chr5:103393971-103393990 None:intergenic 15.0%
!!! TCAAAAACAAAAAATTTTGT+AGG - Chr5:103394002-103394021 None:intergenic 15.0%
!!! TCTTTTAATTTTGAATTGAT+TGG + Chr5:103392023-103392042 MsG0580029885.01.T01:intron 15.0%
!!! TTTAGCTTAAAGAAAAATAA+TGG + Chr5:103394135-103394154 MsG0580029885.01.T01:intron 15.0%
!!! TTTTTCTTTAAGCTAAAATA+TGG - Chr5:103394132-103394151 None:intergenic 15.0%
!! AATACAAACCAATAATATGT+GGG + Chr5:103393258-103393277 MsG0580029885.01.T01:intron 20.0%
!! ACAATACATAATTTAAGTCT+TGG + Chr5:103392943-103392962 MsG0580029885.01.T01:intron 20.0%
!! ACTAATGTAAACTAAACTTT+AGG + Chr5:103392514-103392533 MsG0580029885.01.T01:intron 20.0%
!! AGCACTAAAATATTCAAAAA+GGG + Chr5:103396410-103396429 MsG0580029885.01.T01:intron 20.0%
!! AGGTATAGAATATAATATAG+TGG + Chr5:103392460-103392479 MsG0580029885.01.T01:intron 20.0%
!! ATTAGAAACTCATAATTAAG+AGG - Chr5:103392337-103392356 None:intergenic 20.0%
!! ATTAGAACATTAATGAGTAT+TGG + Chr5:103396167-103396186 MsG0580029885.01.T01:intron 20.0%
!! CATAGTTAAATACAAATGAA+TGG + Chr5:103393357-103393376 MsG0580029885.01.T01:intron 20.0%
!! GAATTCATTTAGTATCTATT+TGG - Chr5:103394354-103394373 None:intergenic 20.0%
!! GGTATAGAATATAATATAGT+GGG + Chr5:103392461-103392480 MsG0580029885.01.T01:intron 20.0%
!! GTAATTGTTTGTGAAATTAA+GGG + Chr5:103392747-103392766 MsG0580029885.01.T01:intron 20.0%
!! GTATACAAACATTGAAATAA+AGG + Chr5:103396099-103396118 MsG0580029885.01.T01:intron 20.0%
!! GTATAGAATATAATATAGTG+GGG + Chr5:103392462-103392481 MsG0580029885.01.T01:intron 20.0%
!! TAATTAAATAATTACACACG+TGG + Chr5:103395881-103395900 MsG0580029885.01.T01:intron 20.0%
!! TAATTAAATAATTACACACG+TGG - Chr5:103395900-103395881 None:intergenic 20.0%
!! TATAGAATATAATATAGTGG+GGG + Chr5:103392463-103392482 MsG0580029885.01.T01:intron 20.0%
!! TATTACATTAAGATGTTGTT+TGG + Chr5:103393287-103393306 MsG0580029885.01.T01:intron 20.0%
!! TGTAATTGTTTGTGAAATTA+AGG + Chr5:103392746-103392765 MsG0580029885.01.T01:intron 20.0%
!! TTATAATGTTGTGTTATGTT+AGG + Chr5:103396616-103396635 MsG0580029885.01.T01:intron 20.0%
!! TTGTTCAATCATGAATATTA+AGG + Chr5:103391953-103391972 MsG0580029885.01.T01:intron 20.0%
!! TTTCAAAATCATCAATAGTT+TGG - Chr5:103397055-103397074 None:intergenic 20.0%
!!! AAAAAACAAAAATTTTTGCC+CGG - Chr5:103393868-103393887 None:intergenic 20.0%
!!! AAAAACCAAAAAATTTTGCA+GGG + Chr5:103394047-103394066 MsG0580029885.01.T01:intron 20.0%
!!! AAATTGTAGTTTTCATACTT+AGG + Chr5:103395981-103396000 MsG0580029885.01.T01:intron 20.0%
!!! AAATTGTAGTTTTCATACTT+AGG - Chr5:103396000-103395981 None:intergenic 20.0%
!!! AAATTTTTTTGTTTTTGGTC+CGG + Chr5:103393846-103393865 MsG0580029885.01.T01:intron 20.0%
!!! AACACTAAAAAATTTAGGAT+CGG - Chr5:103392969-103392988 None:intergenic 20.0%
!!! AAGTATGAAAACTACAATTT+TGG + Chr5:103394537-103394556 MsG0580029885.01.T01:intron 20.0%
!!! AAGTATGAAAACTACAATTT+TGG - Chr5:103394556-103394537 None:intergenic 20.0%
!!! AATTGTAGTTTTCATACTTA+GGG + Chr5:103395982-103396001 MsG0580029885.01.T01:intron 20.0%
!!! AATTGTAGTTTTCATACTTA+GGG - Chr5:103396001-103395982 None:intergenic 20.0%
!!! ACCTATAATTGATATTTTCT+AGG + Chr5:103394460-103394479 MsG0580029885.01.T01:intron 20.0%
!!! GATTTTGAAAATTATACCAA+TGG + Chr5:103397065-103397084 MsG0580029885.01.T01:CDS 20.0%
!!! TAAAAACCAAAAAATTTTGC+AGG + Chr5:103394046-103394065 MsG0580029885.01.T01:intron 20.0%
!!! TGCAAGTTTTTGAAAATTAA+GGG - Chr5:103394504-103394523 None:intergenic 20.0%
!!! TTATCAATTCTCTTTCTTTT+TGG - Chr5:103393750-103393769 None:intergenic 20.0%
!!! TTCTTGGTTCTAAAATTTAT+GGG - Chr5:103395245-103395264 None:intergenic 20.0%
!!! TTGAAGTAAAAAAGTTTGTT+TGG + Chr5:103395525-103395544 MsG0580029885.01.T01:intron 20.0%
!!! TTGCAAGTTTTTGAAAATTA+AGG - Chr5:103394505-103394524 None:intergenic 20.0%
!!! TTTCTTGGTTCTAAAATTTA+TGG - Chr5:103395246-103395265 None:intergenic 20.0%
!!! TTTTCAAAAACTTGCAATTT+TGG + Chr5:103394508-103394527 MsG0580029885.01.T01:intron 20.0%
!!! TTTTGTTATTACAAAGTCAA+AGG + Chr5:103392440-103392459 MsG0580029885.01.T01:intron 20.0%
! AACTAGATCTGAAAAAGATA+TGG - Chr5:103394821-103394840 None:intergenic 25.0%
! AAGTATTTGTCATCATCTTT+AGG + Chr5:103396554-103396573 MsG0580029885.01.T01:intron 25.0%
! ATAAAGAGAAGGCTAAAATA+TGG + Chr5:103393776-103393795 MsG0580029885.01.T01:intron 25.0%
! ATATGTTACAGGTAACATTT+GGG + Chr5:103392408-103392427 MsG0580029885.01.T01:intron 25.0%
! ATCTGAAAAAGATATGGATT+GGG - Chr5:103394815-103394834 None:intergenic 25.0%
! ATGCAAATCATCACAAAAAT+GGG - Chr5:103393906-103393925 None:intergenic 25.0%
! ATTGAAATAAAGGTAACCAA+TGG + Chr5:103396109-103396128 MsG0580029885.01.T01:intron 25.0%
! CAATACAAACCAATAATATG+TGG + Chr5:103393257-103393276 MsG0580029885.01.T01:intron 25.0%
! CACAACTTTATTAATTCACT+CGG - Chr5:103392992-103393011 None:intergenic 25.0%
! CATAATTAAGAGGAGATTAA+TGG - Chr5:103392327-103392346 None:intergenic 25.0%
! CTTAAAATTTCTTGATACCT+TGG - Chr5:103396648-103396667 None:intergenic 25.0%
! GAGCACTAAAATATTCAAAA+AGG + Chr5:103396409-103396428 MsG0580029885.01.T01:intron 25.0%
! GATAAAGTACAATAAAGAGA+AGG + Chr5:103393765-103393784 MsG0580029885.01.T01:intron 25.0%
! GCCTAGAAAATATCAATTAT+AGG - Chr5:103394464-103394483 None:intergenic 25.0%
! GTTAAGAAAAATCCAAAACT+TGG + Chr5:103393638-103393657 MsG0580029885.01.T01:intron 25.0%
! TAAGTAATCCCACATATTAT+TGG - Chr5:103393269-103393288 None:intergenic 25.0%
! TAATGTCAATGAGACAAAAA+GGG + Chr5:103396251-103396270 MsG0580029885.01.T01:intron 25.0%
! TATATGTTACAGGTAACATT+TGG + Chr5:103392407-103392426 MsG0580029885.01.T01:intron 25.0%
! TATGAACTTGGTTAAGATAA+AGG + Chr5:103395653-103395672 MsG0580029885.01.T01:intron 25.0%
! TATGCAAATCATCACAAAAA+TGG - Chr5:103393907-103393926 None:intergenic 25.0%
! TATGTATGAAGATTCAGATT+TGG - Chr5:103395191-103395210 None:intergenic 25.0%
! TATTCAAAAAGGGTCTAAAA+TGG + Chr5:103396420-103396439 MsG0580029885.01.T01:intron 25.0%
! TGTTATGATGATTATGAACT+TGG + Chr5:103395641-103395660 MsG0580029885.01.T01:intron 25.0%
! TTGAAATAAAGGTAACCAAT+GGG + Chr5:103396110-103396129 MsG0580029885.01.T01:intron 25.0%
! TTTAGTGGCGTTAAAAAAAA+TGG + Chr5:103393173-103393192 MsG0580029885.01.T01:intron 25.0%
!! AAGAAGAATAGAGTTTTTGA+TGG - Chr5:103395153-103395172 None:intergenic 25.0%
!! AATTTTGTCCTTTTTCTTCA+TGG + Chr5:103396489-103396508 MsG0580029885.01.T01:intron 25.0%
!! ATAACACATGAAGATTTTGA+AGG + Chr5:103392774-103392793 MsG0580029885.01.T01:CDS 25.0%
!! ATGACCATAAATATTTTCTG+GGG + Chr5:103393667-103393686 MsG0580029885.01.T01:intron 25.0%
!! ATTGTAGTTTTCATACTTAG+GGG + Chr5:103395983-103396002 MsG0580029885.01.T01:intron 25.0%
!! ATTGTAGTTTTCATACTTAG+GGG - Chr5:103396002-103395983 None:intergenic 25.0%
!! CATGACCATAAATATTTTCT+GGG + Chr5:103393666-103393685 MsG0580029885.01.T01:intron 25.0%
!! GTATCAAGAAATTTTAAGCA+AGG + Chr5:103396650-103396669 MsG0580029885.01.T01:CDS 25.0%
!! GTTTAAGACAAAGGAAATTT+AGG + Chr5:103395498-103395517 MsG0580029885.01.T01:intron 25.0%
!! GTTTCAATCGAAATTGTTTT+TGG + Chr5:103394227-103394246 MsG0580029885.01.T01:intron 25.0%
!! TAAGACATATTTTGTTGGAT+TGG - Chr5:103391818-103391837 None:intergenic 25.0%
!! TCATGACCATAAATATTTTC+TGG + Chr5:103393665-103393684 MsG0580029885.01.T01:intron 25.0%
!!! AAGTTTGTTTGGTTTGATAA+AGG + Chr5:103395536-103395555 MsG0580029885.01.T01:intron 25.0%
!!! AAGTTTTTGAAAATTAAGGG+GGG - Chr5:103394501-103394520 None:intergenic 25.0%
!!! AAGTTTTTTGCATGCAATAT+TGG + Chr5:103392693-103392712 MsG0580029885.01.T01:intron 25.0%
!!! AATTTTTTTGTTTTTGGTCC+GGG + Chr5:103393847-103393866 MsG0580029885.01.T01:intron 25.0%
!!! CAAGTTTTTGAAAATTAAGG+GGG - Chr5:103394502-103394521 None:intergenic 25.0%
!!! CACATATTATTGGTTTGTAT+TGG - Chr5:103393259-103393278 None:intergenic 25.0%
!!! GCAAGTTTTTGAAAATTAAG+GGG - Chr5:103394503-103394522 None:intergenic 25.0%
!!! GTCTTGTTTATATTTCTAGA+AGG + Chr5:103392645-103392664 MsG0580029885.01.T01:intron 25.0%
!!! GTTGACTTACATTTTATGTT+GGG - Chr5:103392925-103392944 None:intergenic 25.0%
!!! TAAGGTACTTAGATTCATTT+TGG + Chr5:103396956-103396975 MsG0580029885.01.T01:CDS 25.0%
!!! TGCAAGTTTTTGAAAGTTAA+GGG + Chr5:103396014-103396033 MsG0580029885.01.T01:intron 25.0%
!!! TGTTGACTTACATTTTATGT+TGG - Chr5:103392926-103392945 None:intergenic 25.0%
!!! TTGCAAGTTTTTGAAAGTTA+AGG + Chr5:103396013-103396032 MsG0580029885.01.T01:intron 25.0%
!!! TTTTTAAAATAGTCCCTCTA+GGG - Chr5:103394032-103394051 None:intergenic 25.0%
!!! TTTTTCACTTTTTTGATCAC+AGG + Chr5:103392368-103392387 MsG0580029885.01.T01:intron 25.0%
AAAAAGGACCAAATTTGCAA+TGG + Chr5:103395938-103395957 MsG0580029885.01.T01:intron 30.0%
AAAAAGGACCAAATTTGCAA+TGG - Chr5:103395957-103395938 None:intergenic 30.0%
AAAAGGACCAAATTTGCAAT+GGG + Chr5:103395939-103395958 MsG0580029885.01.T01:intron 30.0%
AAAAGGACCAAATTTGCAAT+GGG - Chr5:103395958-103395939 None:intergenic 30.0%
AACAACTTGTACCTAAATCT+TGG + Chr5:103396808-103396827 MsG0580029885.01.T01:CDS 30.0%
AACATGCTTTCCATTTCAAT+GGG - Chr5:103395095-103395114 None:intergenic 30.0%
AAGACAAAGGAAATTTAGGT+TGG + Chr5:103395502-103395521 MsG0580029885.01.T01:intron 30.0%
AAGTACTTCCATGAAGAAAA+AGG - Chr5:103396500-103396519 None:intergenic 30.0%
AATAAATCCTGGATCTTTCT+TGG - Chr5:103395214-103395233 None:intergenic 30.0%
ACATCATTCAAAAGCAATTC+TGG - Chr5:103394321-103394340 None:intergenic 30.0%
ACCAAAAAAGAATTTCCCAT+TGG - Chr5:103396128-103396147 None:intergenic 30.0%
ATAACAAGCAAGTAAACACA+TGG - Chr5:103395627-103395646 None:intergenic 30.0%
ATAGTAGAAGCTACAAAAGA+TGG + Chr5:103396675-103396694 MsG0580029885.01.T01:CDS 30.0%
CATGTTCATTATTTCATGCA+GGG + Chr5:103394424-103394443 MsG0580029885.01.T01:intron 30.0%
CTAATGTCAATGAGACAAAA+AGG + Chr5:103396250-103396269 MsG0580029885.01.T01:intron 30.0%
CTCGGAACACTAAAAAATTT+AGG - Chr5:103392974-103392993 None:intergenic 30.0%
CTGCATGAAATAATGAACAT+GGG - Chr5:103394425-103394444 None:intergenic 30.0%
GAAGAAGAAGTAAAAGATAG+AGG - Chr5:103394764-103394783 None:intergenic 30.0%
GACTGTTACATATATGTTAC+AGG + Chr5:103392397-103392416 MsG0580029885.01.T01:CDS 30.0%
GATCTGAAAAAGATATGGAT+TGG - Chr5:103394816-103394835 None:intergenic 30.0%
GATGACAAATACTTCCAATA+TGG - Chr5:103396548-103396567 None:intergenic 30.0%
GTAAAGTCCAAATACATTGT+TGG - Chr5:103396765-103396784 None:intergenic 30.0%
TAAAGTCACCAATTTACACA+AGG + Chr5:103396736-103396755 MsG0580029885.01.T01:CDS 30.0%
TAACATGCTTTCCATTTCAA+TGG - Chr5:103395096-103395115 None:intergenic 30.0%
TAGTGCATAAGAGATTACAA+GGG + Chr5:103394892-103394911 MsG0580029885.01.T01:intron 30.0%
TCACACTAACATGTCAAATT+CGG - Chr5:103394393-103394412 None:intergenic 30.0%
TCTTGAGTATTCATCACAAA+GGG - Chr5:103397023-103397042 None:intergenic 30.0%
TGAAGCTAGATTTGATACAT+GGG - Chr5:103395051-103395070 None:intergenic 30.0%
TGCAAATCATCACAAAAATG+GGG - Chr5:103393905-103393924 None:intergenic 30.0%
TTAGCCCCAGAAAATATTTA+TGG - Chr5:103393674-103393693 None:intergenic 30.0%
TTCTAGTAAACTCAAAAGCT+AGG + Chr5:103394197-103394216 MsG0580029885.01.T01:intron 30.0%
TTCTTGAGTATTCATCACAA+AGG - Chr5:103397024-103397043 None:intergenic 30.0%
TTTGTCTCATTGACATTAGA+TGG - Chr5:103396249-103396268 None:intergenic 30.0%
! AAATTGGTGACTTTATTCCA+AGG - Chr5:103396731-103396750 None:intergenic 30.0%
! AATGGAAAGCATGTTAAACA+TGG + Chr5:103395100-103395119 MsG0580029885.01.T01:intron 30.0%
! AATTGGTGACTTTATTCCAA+GGG - Chr5:103396730-103396749 None:intergenic 30.0%
! AGTCCCTGTAAAATTGTTTT+TGG - Chr5:103394074-103394093 None:intergenic 30.0%
! GAATGCTTTTGTGTACATAT+TGG + Chr5:103396830-103396849 MsG0580029885.01.T01:CDS 30.0%
! GGACCAAAAACAATTTTACA+GGG + Chr5:103394068-103394087 MsG0580029885.01.T01:intron 30.0%
! TGAACCCATTTTGTAGTTTT+TGG + Chr5:103393943-103393962 MsG0580029885.01.T01:intron 30.0%
! TTGTAGTTTTCATACTTAGG+GGG + Chr5:103395984-103396003 MsG0580029885.01.T01:intron 30.0%
! TTGTAGTTTTCATACTTAGG+GGG - Chr5:103396003-103395984 None:intergenic 30.0%
! TTTTGCTTTCTCAAAACCAT+TGG - Chr5:103397084-103397103 None:intergenic 30.0%
!! AAGTTTTTGAAAGTTAAGGG+GGG + Chr5:103396017-103396036 MsG0580029885.01.T01:intron 30.0%
!! ACAAAAGCATTCCAAGATTT+AGG - Chr5:103396822-103396841 None:intergenic 30.0%
!! ATAACGGTGTTATTGTTGTT+GGG + Chr5:103395408-103395427 MsG0580029885.01.T01:intron 30.0%
!! CAAGTTTTTGAAAGTTAAGG+GGG + Chr5:103396016-103396035 MsG0580029885.01.T01:intron 30.0%
!! CTCTATTCAAAAGTACTTCA+AGG - Chr5:103396392-103396411 None:intergenic 30.0%
!! GCAAGTTTTTGAAAGTTAAG+GGG + Chr5:103396015-103396034 MsG0580029885.01.T01:intron 30.0%
!! GTACTTAGATTCATTTTGGT+TGG + Chr5:103396960-103396979 MsG0580029885.01.T01:CDS 30.0%
!! TCAAAAGTACTTCAAGGATA+TGG - Chr5:103396386-103396405 None:intergenic 30.0%
!! TTTTGAAAATAGTCCCTAGA+GGG + Chr5:103394016-103394035 MsG0580029885.01.T01:intron 30.0%
!! TTTTTGAAAATAGTCCCTAG+AGG + Chr5:103394015-103394034 MsG0580029885.01.T01:intron 30.0%
!!! AATATTTTCTGGGGCTAATT+TGG + Chr5:103393676-103393695 MsG0580029885.01.T01:intron 30.0%
!!! ACCAATGGGAAATTCTTTTT+TGG + Chr5:103396124-103396143 MsG0580029885.01.T01:intron 30.0%
!!! ATTGGTTTTCTTCATCATCT+GGG + Chr5:103392041-103392060 MsG0580029885.01.T01:intron 30.0%
!!! GTTTTGAGAAAGCAAAACAT+TGG + Chr5:103397087-103397106 MsG0580029885.01.T01:CDS 30.0%
!!! GTTTTTAAAATAGTCCCTCT+AGG - Chr5:103394033-103394052 None:intergenic 30.0%
AAAGGACCAAATTTGCAATG+GGG + Chr5:103395940-103395959 MsG0580029885.01.T01:intron 35.0%
AAAGGACCAAATTTGCAATG+GGG - Chr5:103395959-103395940 None:intergenic 35.0%
AACAATAACACCGTTATGGT+TGG - Chr5:103395405-103395424 None:intergenic 35.0%
AAGGACACCAACAATGTATT+TGG + Chr5:103396755-103396774 MsG0580029885.01.T01:CDS 35.0%
AATTCATCCAAGACAAGGAA+AGG - Chr5:103392098-103392117 None:intergenic 35.0%
ACTAGCAATTCCAACATGTT+TGG - Chr5:103394281-103394300 None:intergenic 35.0%
AGCTACAAAAGATGGTATCA+AGG + Chr5:103396683-103396702 MsG0580029885.01.T01:CDS 35.0%
AGGGACCAAAAACTACAAAA+TGG - Chr5:103393951-103393970 None:intergenic 35.0%
ATACATACCAAGAAAGATCC+AGG + Chr5:103395204-103395223 MsG0580029885.01.T01:intron 35.0%
ATAGTAATCTGTGTGCTAGT+GGG + Chr5:103392606-103392625 MsG0580029885.01.T01:intron 35.0%
ATCAAGGTTAGAGTTATTGC+AGG + Chr5:103396699-103396718 MsG0580029885.01.T01:CDS 35.0%
ATTTAGCCCCATTGCAAATT+TGG + Chr5:103394569-103394588 MsG0580029885.01.T01:intron 35.0%
ATTTAGCCCCATTGCAAATT+TGG - Chr5:103394588-103394569 None:intergenic 35.0%
CAAAACGAGGCATATTTGAA+GGG + Chr5:103394099-103394118 MsG0580029885.01.T01:intron 35.0%
CAACAACAATAACACCGTTA+TGG - Chr5:103395409-103395428 None:intergenic 35.0%
CCATGTTCATTATTTCATGC+AGG + Chr5:103394423-103394442 MsG0580029885.01.T01:intron 35.0%
CCTGCATGAAATAATGAACA+TGG - Chr5:103394426-103394445 None:intergenic 35.0%
CTGTTGTAATCCAACCATAA+CGG + Chr5:103395392-103395411 MsG0580029885.01.T01:intron 35.0%
GGCATGGAATAAATCTTCTA+AGG + Chr5:103396938-103396957 MsG0580029885.01.T01:CDS 35.0%
GGGACCAAAAACTACAAAAT+GGG - Chr5:103393950-103393969 None:intergenic 35.0%
GGGTATGTATGAATAAATCC+TGG - Chr5:103395225-103395244 None:intergenic 35.0%
GTAGTGCATAAGAGATTACA+AGG + Chr5:103394891-103394910 MsG0580029885.01.T01:intron 35.0%
GTGAAGCTAGATTTGATACA+TGG - Chr5:103395052-103395071 None:intergenic 35.0%
GTTATGTTAGGATTGAACCA+AGG + Chr5:103396628-103396647 MsG0580029885.01.T01:intron 35.0%
TATAGTAATCTGTGTGCTAG+TGG + Chr5:103392605-103392624 MsG0580029885.01.T01:intron 35.0%
TCAAGGTTAGAGTTATTGCA+GGG + Chr5:103396700-103396719 MsG0580029885.01.T01:CDS 35.0%
TCTTATGCACTACTTGTATG+TGG - Chr5:103394884-103394903 None:intergenic 35.0%
TTGAGAAAGCAAAACATTGG+AGG + Chr5:103397090-103397109 MsG0580029885.01.T01:CDS 35.0%
TTGGACTTTACTCTTAAACC+TGG + Chr5:103396774-103396793 MsG0580029885.01.T01:CDS 35.0%
TTTGATAAAGGAACCAGATC+TGG + Chr5:103395548-103395567 MsG0580029885.01.T01:intron 35.0%
! ACATTTTATGTTGGGAAGCA+AGG - Chr5:103392917-103392936 None:intergenic 35.0%
! CTTTTTGCGTCACAAAAATC+AGG + Chr5:103396213-103396232 MsG0580029885.01.T01:intron 35.0%
! GACTTTTCCTTTGTAAAGAG+TGG - Chr5:103396281-103396300 None:intergenic 35.0%
! GCTTTTGTGTACATATTGGA+AGG + Chr5:103396834-103396853 MsG0580029885.01.T01:CDS 35.0%
! GGGACCAAAAACAATTTTAC+AGG + Chr5:103394067-103394086 MsG0580029885.01.T01:intron 35.0%
! GTTTGTATTGGCATCATACA+CGG - Chr5:103393247-103393266 None:intergenic 35.0%
! TGTTTCGGTTTGTATACATC+AGG - Chr5:103394938-103394957 None:intergenic 35.0%
! TTGTTAGAAGAAGCATAGGA+AGG + Chr5:103391777-103391796 MsG0580029885.01.T01:CDS 35.0%
! TTGTTGTTGGGAATGACATT+CGG + Chr5:103395420-103395439 MsG0580029885.01.T01:intron 35.0%
!! AAATGGAAACGGTTTTAGTG+AGG + Chr5:103395460-103395479 MsG0580029885.01.T01:intron 35.0%
!! AATGGAAACGGTTTTAGTGA+GGG + Chr5:103395461-103395480 MsG0580029885.01.T01:intron 35.0%
!! ATATTCTCCTTCTAGGGTTT+GGG + Chr5:103396904-103396923 MsG0580029885.01.T01:CDS 35.0%
!! CATAACGGTGTTATTGTTGT+TGG + Chr5:103395407-103395426 MsG0580029885.01.T01:intron 35.0%
!! GAAGATTTTGAAGGACACAA+GGG + Chr5:103392783-103392802 MsG0580029885.01.T01:CDS 35.0%
!! TCCTTTTTGCCAATTTTGAC+CGG + Chr5:103394592-103394611 MsG0580029885.01.T01:intron 35.0%
!! TCCTTTTTGCCAATTTTGAC+CGG - Chr5:103394611-103394592 None:intergenic 35.0%
!! TGAAGATTTTGAAGGACACA+AGG + Chr5:103392782-103392801 MsG0580029885.01.T01:CDS 35.0%
!!! CTTAGATTCATTTTGGTTGG+AGG + Chr5:103396963-103396982 MsG0580029885.01.T01:CDS 35.0%
!!! GATTGGTTTTCTTCATCATC+TGG + Chr5:103392040-103392059 MsG0580029885.01.T01:intron 35.0%
!!! TTGGTCCCTGCAAAATTTTT+TGG - Chr5:103394055-103394074 None:intergenic 35.0%
AAACATGCCAAACCTCTATG+TGG - Chr5:103392276-103392295 None:intergenic 40.0%
AAACCTCTATGTGGATGATC+AGG - Chr5:103392267-103392286 None:intergenic 40.0%
AACTTCCTTGTTACAAGACG+AGG - Chr5:103391722-103391741 None:intergenic 40.0%
AAGAACCTCGTCTTGTAACA+AGG + Chr5:103391714-103391733 MsG0580029885.01.T01:CDS 40.0%
ACCGGTCAAAATTGGCAAAA+AGG + Chr5:103395922-103395941 MsG0580029885.01.T01:intron 40.0%
ACCGGTCAAAATTGGCAAAA+AGG - Chr5:103395941-103395922 None:intergenic 40.0%
ACTGTGTACGCAAATGGAAA+CGG + Chr5:103395449-103395468 MsG0580029885.01.T01:intron 40.0%
AGAAGCTGAACCAAACATGT+TGG + Chr5:103394268-103394287 MsG0580029885.01.T01:intron 40.0%
AGAATATGGTGAGAGGTTGT+AGG - Chr5:103396891-103396910 None:intergenic 40.0%
AGCACGTCATCATCTAATCA+TGG - Chr5:103396195-103396214 None:intergenic 40.0%
AGCTAGATTTGATACATGGG+AGG - Chr5:103395048-103395067 None:intergenic 40.0%
ATACAAACCGAAACAGCATG+AGG + Chr5:103394943-103394962 MsG0580029885.01.T01:intron 40.0%
ATGGACACACTGGTGAAAAA+GGG - Chr5:103396529-103396548 None:intergenic 40.0%
CAAAACGAGGCATATTTGCA+GGG - Chr5:103393809-103393828 None:intergenic 40.0%
CAAACCCTAGAAGGAGAATA+TGG - Chr5:103396905-103396924 None:intergenic 40.0%
CAAGGTTAGAGTTATTGCAG+GGG + Chr5:103396701-103396720 MsG0580029885.01.T01:CDS 40.0%
CACGTCATCATCTAATCATG+GGG - Chr5:103396193-103396212 None:intergenic 40.0%
CCAAAACGAGGCATATTTGA+AGG + Chr5:103394098-103394117 MsG0580029885.01.T01:intron 40.0%
CTCACCATATTCTCCTTCTA+GGG + Chr5:103396898-103396917 MsG0580029885.01.T01:CDS 40.0%
CTGAGAATTCATCCAAGACA+AGG - Chr5:103392103-103392122 None:intergenic 40.0%
CTTGTCTTGGATGAATTCTC+AGG + Chr5:103392101-103392120 MsG0580029885.01.T01:CDS 40.0%
CTTTGATCCTTTCCTTGTCT+TGG + Chr5:103392088-103392107 MsG0580029885.01.T01:CDS 40.0%
GCACGTCATCATCTAATCAT+GGG - Chr5:103396194-103396213 None:intergenic 40.0%
GCTTCTCAAGGAATCCAAAA+GGG + Chr5:103392873-103392892 MsG0580029885.01.T01:CDS 40.0%
GGGAATTCCACTCTTTACAA+AGG + Chr5:103396271-103396290 MsG0580029885.01.T01:intron 40.0%
GTGTACATATTGGAAGGAGA+GGG + Chr5:103396840-103396859 MsG0580029885.01.T01:CDS 40.0%
GTTGAAACTGTGTACGCAAA+TGG + Chr5:103395443-103395462 MsG0580029885.01.T01:intron 40.0%
TACTTCCAATATGGACACAC+TGG - Chr5:103396539-103396558 None:intergenic 40.0%
TAGAAGGAGAATATGGTGAG+AGG - Chr5:103396898-103396917 None:intergenic 40.0%
TATGGACACACTGGTGAAAA+AGG - Chr5:103396530-103396549 None:intergenic 40.0%
TCTCACCATATTCTCCTTCT+AGG + Chr5:103396897-103396916 MsG0580029885.01.T01:CDS 40.0%
TGATCATCCACATAGAGGTT+TGG + Chr5:103392266-103392285 MsG0580029885.01.T01:intron 40.0%
TGCAATGGGGCTAAATCTTA+GGG + Chr5:103395953-103395972 MsG0580029885.01.T01:intron 40.0%
TGCAATGGGGCTAAATCTTA+GGG - Chr5:103395972-103395953 None:intergenic 40.0%
TGCTTCTCAAGGAATCCAAA+AGG + Chr5:103392872-103392891 MsG0580029885.01.T01:CDS 40.0%
TGGTTGGATTACAACAGAGA+CGG - Chr5:103395389-103395408 None:intergenic 40.0%
TGTGTACATATTGGAAGGAG+AGG + Chr5:103396839-103396858 MsG0580029885.01.T01:CDS 40.0%
TGTTGTTGGGAATGACATTC+GGG + Chr5:103395421-103395440 MsG0580029885.01.T01:intron 40.0%
TTGCAATGGGGCTAAATCTT+AGG + Chr5:103395952-103395971 MsG0580029885.01.T01:intron 40.0%
TTGCAATGGGGCTAAATCTT+AGG - Chr5:103395971-103395952 None:intergenic 40.0%
TTTCACCAGTGTGTCCATAT+TGG + Chr5:103396531-103396550 MsG0580029885.01.T01:intron 40.0%
TTTCCTGATCATCCACATAG+AGG + Chr5:103392261-103392280 MsG0580029885.01.T01:CDS 40.0%
! CCTTCAAATATGCCTCGTTT+TGG - Chr5:103394101-103394120 None:intergenic 40.0%
! GAACGTGTGGTTTAAGACAA+AGG + Chr5:103395489-103395508 MsG0580029885.01.T01:intron 40.0%
! GATGAGTATCGTTACTGGAA+CGG - Chr5:103395293-103395312 None:intergenic 40.0%
! GCTGTTGTTAGAAGAAGCAT+AGG + Chr5:103391773-103391792 MsG0580029885.01.T01:CDS 40.0%
! GGTCATGAGTTACCAAGTTT+TGG - Chr5:103393653-103393672 None:intergenic 40.0%
! GTTGGTGTCCTTGTGTAAAT+TGG - Chr5:103396747-103396766 None:intergenic 40.0%
! TCGGTTTGTATACATCAGGT+GGG - Chr5:103394934-103394953 None:intergenic 40.0%
! TTCGGTTTGTATACATCAGG+TGG - Chr5:103394935-103394954 None:intergenic 40.0%
! TTTTGCTCTCTAGGCTTTCT+AGG - Chr5:103395007-103395026 None:intergenic 40.0%
! TTTTGGATTCCTTGAGAAGC+AGG - Chr5:103392873-103392892 None:intergenic 40.0%
!! CATATTCTCCTTCTAGGGTT+TGG + Chr5:103396903-103396922 MsG0580029885.01.T01:CDS 40.0%
!! GCATTTTCCTCATGCTGTTT+CGG - Chr5:103394953-103394972 None:intergenic 40.0%
!! TATTCTCCTTCTAGGGTTTG+GGG + Chr5:103396905-103396924 MsG0580029885.01.T01:CDS 40.0%
!! TGGGAGGTTATTTTACAGCT+TGG - Chr5:103395032-103395051 None:intergenic 40.0%
!!! CGAGGTTCTTTGAGATTTTC+TGG - Chr5:103391704-103391723 None:intergenic 40.0%
!!! TTGGAAGGAGAGGGTATTTT+CGG + Chr5:103396849-103396868 MsG0580029885.01.T01:CDS 40.0%
AAAGGAACCAGATCTGGAAG+TGG + Chr5:103395554-103395573 MsG0580029885.01.T01:intron 45.0%
AACACCTTCTCGTTGAGGTT+TGG - Chr5:103391750-103391769 None:intergenic 45.0%
AAGGGTCCAAATTGTACCAC+TGG - Chr5:103397005-103397024 None:intergenic 45.0%
AGTCCACTCAAGCTAGTAGT+TGG - Chr5:103392671-103392690 None:intergenic 45.0%
CAATGGGGCTAAATCTTAGG+GGG + Chr5:103395955-103395974 MsG0580029885.01.T01:intron 45.0%
CAATGGGGCTAAATCTTAGG+GGG - Chr5:103395974-103395955 None:intergenic 45.0%
CACAACAACGCCCATTGAAA+TGG + Chr5:103395082-103395101 MsG0580029885.01.T01:intron 45.0%
CACAAGGGAACAATTGAAGC+TGG + Chr5:103392798-103392817 MsG0580029885.01.T01:CDS 45.0%
CAGGGACTAAAACCAAAACG+AGG + Chr5:103394086-103394105 MsG0580029885.01.T01:intron 45.0%
CCAAAACGAGGCATATTTGC+AGG - Chr5:103393810-103393829 None:intergenic 45.0%
GCAATGGGGCTAAATCTTAG+GGG + Chr5:103395954-103395973 MsG0580029885.01.T01:intron 45.0%
GCAATGGGGCTAAATCTTAG+GGG - Chr5:103395973-103395954 None:intergenic 45.0%
GGATGATCAGGAAATCCAGA+AGG - Chr5:103392255-103392274 None:intergenic 45.0%
GGATTGGGATTGAGATTGAG+AGG - Chr5:103394800-103394819 None:intergenic 45.0%
GGTGAACCAGTGGTACAATT+TGG + Chr5:103396996-103397015 MsG0580029885.01.T01:CDS 45.0%
GTACTAACCACTTCCAGATC+TGG - Chr5:103395564-103395583 None:intergenic 45.0%
GTCACGTGTGAAATTGAGAG+AGG - Chr5:103396337-103396356 None:intergenic 45.0%
GTTCAAATCATCACCGACAG+CGG - Chr5:103395359-103395378 None:intergenic 45.0%
TCAGAAATGCCTGCTTCTCA+AGG + Chr5:103392861-103392880 MsG0580029885.01.T01:CDS 45.0%
TCCAAAAGGGTCTTCAGCTA+TGG + Chr5:103392886-103392905 MsG0580029885.01.T01:CDS 45.0%
TGAACCATTAGGTGAACCAG+TGG + Chr5:103396986-103397005 MsG0580029885.01.T01:CDS 45.0%
TTAGCCAAACCTCAACGAGA+AGG + Chr5:103391743-103391762 MsG0580029885.01.T01:CDS 45.0%
TTGGTTGGAGGTGAACCATT+AGG + Chr5:103396975-103396994 MsG0580029885.01.T01:CDS 45.0%
! AAAAAATTGGAAGGGGCGTG+TGG - Chr5:103395751-103395770 None:intergenic 45.0%
! AAACCTCAACGAGAAGGTGT+TGG + Chr5:103391749-103391768 MsG0580029885.01.T01:CDS 45.0%
! AACGTGCTGTGGTGATGAAA+TGG + Chr5:103396453-103396472 MsG0580029885.01.T01:intron 45.0%
! CATTTCAATGGGCGTTGTTG+TGG - Chr5:103395084-103395103 None:intergenic 45.0%
! CCTGCAAATATGCCTCGTTT+TGG + Chr5:103393807-103393826 MsG0580029885.01.T01:intron 45.0%
! CGGAAGATGAGTATCGTTAC+TGG - Chr5:103395298-103395317 None:intergenic 45.0%
! TCCATAGCTGAAGACCCTTT+TGG - Chr5:103392890-103392909 None:intergenic 45.0%
!! TGTACCACTGGTTCACCTAA+TGG - Chr5:103396993-103397012 None:intergenic 45.0%
!!! AGCTTGGTGTTTTGCTCTCT+AGG - Chr5:103395016-103395035 None:intergenic 45.0%
!! AATTAAAAAATAAAAAATTC+AGG - Chr5:103395807-103395826 None:intergenic 5.0%
!! ATTAAAAAAATAAAAAATTC+AGG + Chr5:103394711-103394730 MsG0580029885.01.T01:intron 5.0%
!!! AAATATTTTGTTTTTTAAAA+AGG + Chr5:103393974-103393993 MsG0580029885.01.T01:intron 5.0%
!!! TAAATTTTTTTGATTAAATT+TGG + Chr5:103393704-103393723 MsG0580029885.01.T01:intron 5.0%
AGTGGATGACTGCTGGTAGA+GGG + Chr5:103392829-103392848 MsG0580029885.01.T01:CDS 50.0%
AGTTGTTGCAAGTGTGCTCC+AGG - Chr5:103396795-103396814 None:intergenic 50.0%
ATTGCAGTTGCTGCTCCTTC+TGG + Chr5:103392237-103392256 MsG0580029885.01.T01:intron 50.0%
CAAGAAATTTCCTCCACCGC+CGG + Chr5:103395259-103395278 MsG0580029885.01.T01:intron 50.0%
CAGGGGCTAAAACCAAAACG+AGG - Chr5:103393822-103393841 None:intergenic 50.0%
CATCACCACAGCACGTTCTT+TGG - Chr5:103396450-103396469 None:intergenic 50.0%
CATTGGAGGTCTAGTGCAGT+TGG + Chr5:103397104-103397123 MsG0580029885.01.T01:CDS 50.0%
GACAAGAGGGACAACAGTTC+AGG - Chr5:103393202-103393221 None:intergenic 50.0%
GTCAACCGACCAAGCTAACT+AGG - Chr5:103395324-103395343 None:intergenic 50.0%
TTGGTCGGTTGACCAGCTAT+CGG + Chr5:103395331-103395350 MsG0580029885.01.T01:intron 50.0%
! AAGGGGGGAAAAGTGCACTT+TGG + Chr5:103396032-103396051 MsG0580029885.01.T01:intron 50.0%
! AAGGGGGGAAAAGTGCACTT+TGG - Chr5:103396051-103396032 None:intergenic 50.0%
! AGGCCAACTACTAGCTTGAG+TGG + Chr5:103392665-103392684 MsG0580029885.01.T01:intron 50.0%
! TTGAAGCTGGTGACTTGCAG+TGG + Chr5:103392811-103392830 MsG0580029885.01.T01:CDS 50.0%
!! AGGCGTTGACCGGTCAAAAT+TGG + Chr5:103395914-103395933 MsG0580029885.01.T01:intron 50.0%
!! AGGCGTTGACCGGTCAAAAT+TGG - Chr5:103395933-103395914 None:intergenic 50.0%
!! GGAAACGGTTTTAGTGAGGG+AGG + Chr5:103395464-103395483 MsG0580029885.01.T01:intron 50.0%
ACCACAGCACGTTCTTTGGC+TGG - Chr5:103396446-103396465 None:intergenic 55.0%
AGGGTTTGGGGATGGTCTAG+AGG + Chr5:103396917-103396936 MsG0580029885.01.T01:CDS 55.0%
AGTGAGGGAGGAAGAACGTG+TGG + Chr5:103395476-103395495 MsG0580029885.01.T01:intron 55.0%
CAGTGGATGACTGCTGGTAG+AGG + Chr5:103392828-103392847 MsG0580029885.01.T01:CDS 55.0%
CGACCAAGCTAACTAGGCGA+CGG - Chr5:103395318-103395337 None:intergenic 55.0%
CGGCGGTGGAGGAAATTTCT+TGG - Chr5:103395261-103395280 None:intergenic 55.0%
CTTCCGTCGCCTAGTTAGCT+TGG + Chr5:103395312-103395331 MsG0580029885.01.T01:intron 55.0%
GACCATCCCCAAACCCTAGA+AGG - Chr5:103396914-103396933 None:intergenic 55.0%
GACTTGCAGTGGATGACTGC+TGG + Chr5:103392822-103392841 MsG0580029885.01.T01:CDS 55.0%
GCTCCAACACCTTCTCGTTG+AGG - Chr5:103391755-103391774 None:intergenic 55.0%
GTTATTGCAGGGGAAGCCCT+TGG + Chr5:103396711-103396730 MsG0580029885.01.T01:CDS 55.0%
TACTGGAACGGAAACGACGC+CGG - Chr5:103395281-103395300 None:intergenic 55.0%
TTGGCATCATACACGGCCCT+CGG - Chr5:103393240-103393259 None:intergenic 55.0%
TTGGGGATGGTCTAGAGGCA+TGG + Chr5:103396922-103396941 MsG0580029885.01.T01:CDS 55.0%
! CGTCGCCTAGTTAGCTTGGT+CGG + Chr5:103395316-103395335 MsG0580029885.01.T01:intron 55.0%
!! CTCCTTCTAGGGTTTGGGGA+TGG + Chr5:103396909-103396928 MsG0580029885.01.T01:CDS 55.0%
ACACACGTGGCATGCCACGT+AGG + Chr5:103395894-103395913 MsG0580029885.01.T01:intron 60.0%
ACACACGTGGCATGCCACGT+AGG - Chr5:103395913-103395894 None:intergenic 60.0%
GCCAGCCAAAGAACGTGCTG+TGG + Chr5:103396442-103396461 MsG0580029885.01.T01:intron 60.0%
GGCGTTGTTGTGGCTGCGTA+CGG - Chr5:103395074-103395093 None:intergenic 60.0%
GTCCCTCTTGTCCACCCTCA+GGG + Chr5:103393210-103393229 MsG0580029885.01.T01:intron 60.0%
TGGCATCATACACGGCCCTC+GGG - Chr5:103393239-103393258 None:intergenic 60.0%
TGTCCCTCTTGTCCACCCTC+AGG + Chr5:103393209-103393228 MsG0580029885.01.T01:intron 60.0%
TTGACCGGTCAACGCCTACG+TGG + Chr5:103394607-103394626 MsG0580029885.01.T01:intron 60.0%
TTGACCGGTCAACGCCTACG+TGG - Chr5:103394626-103394607 None:intergenic 60.0%
!! CATGCCACGTAGGCGTTGAC+CGG + Chr5:103395904-103395923 MsG0580029885.01.T01:intron 60.0%
!! CATGCCACGTAGGCGTTGAC+CGG - Chr5:103395923-103395904 None:intergenic 60.0%
CATCATACACGGCCCTCGGG+TGG - Chr5:103393236-103393255 None:intergenic 65.0%
GGCCCTGAGGGTGGACAAGA+GGG - Chr5:103393215-103393234 None:intergenic 65.0%
TGGAACGGAAACGACGCCGG+CGG - Chr5:103395278-103395297 None:intergenic 65.0%
TGGCCCTGAGGGTGGACAAG+AGG - Chr5:103393216-103393235 None:intergenic 65.0%
AACGGAAACGACGCCGGCGG+TGG - Chr5:103395275-103395294 None:intergenic 70.0%
CCAGCTATCGGCGCCGCTGT+CGG + Chr5:103395343-103395362 MsG0580029885.01.T01:intron 70.0%
CCACCCTCAGGGCCACCCGA+GGG + Chr5:103393221-103393240 MsG0580029885.01.T01:intron 75.0%
GGAAACGACGCCGGCGGTGG+AGG - Chr5:103395272-103395291 None:intergenic 75.0%
TCCACCCTCAGGGCCACCCG+AGG + Chr5:103393220-103393239 MsG0580029885.01.T01:intron 75.0%
!! CCGACAGCGGCGCCGATAGC+TGG - Chr5:103395346-103395365 None:intergenic 75.0%
! ACGGCCCTCGGGTGGCCCTG+AGG - Chr5:103393228-103393247 None:intergenic 80.0%
! CCCTCGGGTGGCCCTGAGGG+TGG - Chr5:103393224-103393243 None:intergenic 80.0%
! CGGCCCTCGGGTGGCCCTGA+GGG - Chr5:103393227-103393246 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr5 gene 103391698 103397139 103391698 ID=MsG0580029885.01;Name=MsG0580029885.01
Chr5 mRNA 103391698 103397139 103391698 ID=MsG0580029885.01.T01;Parent=MsG0580029885.01;Name=MsG0580029885.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0|0|1|1|1|6|0|295
Chr5 exon 103391698 103391798 103391698 ID=MsG0580029885.01.T01:exon:7050;Parent=MsG0580029885.01.T01
Chr5 exon 103392073 103392122 103392073 ID=MsG0580029885.01.T01:exon:7051;Parent=MsG0580029885.01.T01
Chr5 exon 103392244 103392282 103392244 ID=MsG0580029885.01.T01:exon:7052;Parent=MsG0580029885.01.T01
Chr5 exon 103392390 103392418 103392390 ID=MsG0580029885.01.T01:exon:7053;Parent=MsG0580029885.01.T01
Chr5 exon 103392768 103392934 103392768 ID=MsG0580029885.01.T01:exon:7054;Parent=MsG0580029885.01.T01
Chr5 exon 103396638 103397139 103396638 ID=MsG0580029885.01.T01:exon:7055;Parent=MsG0580029885.01.T01
Chr5 CDS 103391698 103391798 103391698 ID=MsG0580029885.01.T01:cds;Parent=MsG0580029885.01.T01
Chr5 CDS 103392073 103392122 103392073 ID=MsG0580029885.01.T01:cds;Parent=MsG0580029885.01.T01
Chr5 CDS 103392244 103392282 103392244 ID=MsG0580029885.01.T01:cds;Parent=MsG0580029885.01.T01
Chr5 CDS 103392390 103392418 103392390 ID=MsG0580029885.01.T01:cds;Parent=MsG0580029885.01.T01
Chr5 CDS 103392768 103392934 103392768 ID=MsG0580029885.01.T01:cds;Parent=MsG0580029885.01.T01
Chr5 CDS 103396638 103397139 103396638 ID=MsG0580029885.01.T01:cds;Parent=MsG0580029885.01.T01
Gene Sequence

>MsG0580029885.01.T01

ATGCCAGAAAATCTCAAAGAACCTCGTCTTGTAACAAGGAAGTTCTTAGCCAAACCTCAACGAGAAGGTGTTGGAGCTGTTGTTAGAAGAAGCATAGGAAGATTTGAGCTCAAGTACTTTGATCCTTTCCTTGTCTTGGATGAATTCTCAGTTGCTGCTCCTTCTGGATTTCCTGATCATCCACATAGAGGTTTTGAGACTGTTACATATATGTTACAGGGTGCTATAACACATGAAGATTTTGAAGGACACAAGGGAACAATTGAAGCTGGTGACTTGCAGTGGATGACTGCTGGTAGAGGGATAGTGCACTCAGAAATGCCTGCTTCTCAAGGAATCCAAAAGGGTCTTCAGCTATGGATCAACCTTGCTTCCCAACATAAAATGATTGAACCAAGGTATCAAGAAATTTTAAGCAAGGACATAGTAGAAGCTACAAAAGATGGTATCAAGGTTAGAGTTATTGCAGGGGAAGCCCTTGGAATAAAGTCACCAATTTACACAAGGACACCAACAATGTATTTGGACTTTACTCTTAAACCTGGAGCACACTTGCAACAACTTGTACCTAAATCTTGGAATGCTTTTGTGTACATATTGGAAGGAGAGGGTATTTTCGGAAACAAAAAATCTAATCCTACAACCTCTCACCATATTCTCCTTCTAGGGTTTGGGGATGGTCTAGAGGCATGGAATAAATCTTCTAAGGTACTTAGATTCATTTTGGTTGGAGGTGAACCATTAGGTGAACCAGTGGTACAATTTGGACCCTTTGTGATGAATACTCAAGAAGAGATTGACCAAACTATTGATGATTTTGAAAATTATACCAATGGTTTTGAGAAAGCAAAACATTGGAGGTCTAGTGCAGTTGGTTTAGAATTTTGA
Protein sequence

>MsG0580029885.01.T01

MPENLKEPRLVTRKFLAKPQREGVGAVVRRSIGRFELKYFDPFLVLDEFSVAAPSGFPDHPHRGFETVTYMLQGAITHEDFEGHKGTIEAGDLQWMTAGRGIVHSEMPASQGIQKGLQLWINLASQHKMIEPRYQEILSKDIVEATKDGIKVRVIAGEALGIKSPIYTRTPTMYLDFTLKPGAHLQQLVPKSWNAFVYILEGEGIFGNKKSNPTTSHHILLLGFGDGLEAWNKSSKVLRFILVGGEPLGEPVVQFGPFVMNTQEEIDQTIDDFENYTNGFEKAKHWRSSAVGLEF*