AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029983.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029983.01.T01 MTR_5g095960 83.846 260 20 2 1 249 1 249 1.10e-156 435
MsG0580029983.01.T01 MTR_5g095960 81.498 227 20 2 1 216 1 216 1.04e-130 368
MsG0580029983.01.T01 MTR_3g007850 80.193 207 19 2 1 196 1 196 1.98e-115 329
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029983.01.T01 AT5G55810 57.647 255 75 3 1 243 1 234 3.12e-99 289
MsG0580029983.01.T01 AT5G55810 46.494 271 106 6 1 243 1 260 2.32e-68 212
MsG0580029983.01.T01 AT5G55810 65.476 84 20 1 1 84 1 75 5.85e-29 108

Find 82 sgRNAs with CRISPR-Local

Find 397 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCATTTAGCTTGTGAATTA+TGG 0.159598 5:+104720739 None:intergenic
CAACTAATGCTCCTTGTCTT+TGG 0.220395 5:+104727499 None:intergenic
TCCAAAGGCTACTGTGTAAT+TGG 0.244502 5:-104724157 MsG0580029983.01.T01:CDS
GATAAATAATTCCTACAAAT+TGG 0.251786 5:-104720873 MsG0580029983.01.T01:exon
AAGAGTATATGCAGAGATTA+TGG 0.295544 5:-104721575 MsG0580029983.01.T01:CDS
AACTAATGCTCCTTGTCTTT+GGG 0.307405 5:+104727500 None:intergenic
GTTGATGAATGAATGAGTTT+TGG 0.319307 5:+104727522 None:intergenic
CTTGTTGAGCTGATTTGATT+TGG 0.320482 5:+104721107 None:intergenic
CAAGTATAATTTATGTTCTC+TGG 0.334539 5:+104720905 None:intergenic
TGGCAAGATTTATGTCATTC+TGG 0.334748 5:-104725052 MsG0580029983.01.T01:CDS
ACATACTTGTTTGTGTTTCC+AGG 0.341439 5:+104725160 None:intergenic
GCATTAGTTGATTGATCAAT+TGG 0.341671 5:-104727486 MsG0580029983.01.T01:five_prime_UTR
GAATGATGCATACAAGAAAA+AGG 0.360866 5:-104724116 MsG0580029983.01.T01:intron
TGTTTAATAAACAGTTGATT+TGG 0.360952 5:-104720792 MsG0580029983.01.T01:three_prime_UTR
TCGAATACAATTATGTCATT+TGG 0.369646 5:-104723434 MsG0580029983.01.T01:CDS
TAAATATTTGTAGCGATGAA+TGG 0.377350 5:+104727551 None:intergenic
GCATATGATGTCCAATTTGT+AGG 0.392516 5:+104720862 None:intergenic
TCCAATTACACAGTAGCCTT+TGG 0.395774 5:+104724156 None:intergenic
TATGTCATTCTGGTGGCAAC+TGG 0.406785 5:-104725042 MsG0580029983.01.T01:CDS
CAGAACCCTTCCTTCTCTCT+CGG 0.409910 5:-104725705 MsG0580029983.01.T01:five_prime_UTR
CACACTTCTATTTGTGAGAC+AGG 0.414912 5:-104723136 MsG0580029983.01.T01:CDS
CCATCGAACTCCTTCTTAAC+GGG 0.422151 5:-104727921 MsG0580029983.01.T01:intron
TAATATTCTGAATGAGAATC+AGG 0.429306 5:-104721498 MsG0580029983.01.T01:intron
TCCATCGAACTCCTTCTTAA+CGG 0.434408 5:-104727922 MsG0580029983.01.T01:five_prime_UTR
AAATATTTGTAGCGATGAAT+GGG 0.439739 5:+104727552 None:intergenic
TTCTTCTTCCAACATATATG+AGG 0.440347 5:-104721735 MsG0580029983.01.T01:CDS
CAAAAGTTCAGAATTTGTAA+TGG 0.454517 5:-104723407 MsG0580029983.01.T01:CDS
TTGTTTGTGTTTCCAGGGGA+GGG 0.460251 5:+104725166 None:intergenic
TTCTTGTATGCATCATTCAC+AGG 0.473491 5:+104724121 None:intergenic
TTTATGCATTTACGCATGTT+CGG 0.474301 5:-104725000 MsG0580029983.01.T01:intron
TTTGGTGTTGTAAAACTAGC+AGG 0.475184 5:-104720774 MsG0580029983.01.T01:three_prime_UTR
CTTGTTTGTGTTTCCAGGGG+AGG 0.479080 5:+104725165 None:intergenic
ATTAGTAATGAACCCTCCCC+TGG 0.489052 5:-104725178 MsG0580029983.01.T01:CDS
AGCGATGAATGGGAACAATC+TGG 0.495728 5:+104727562 None:intergenic
CATACTTGTTTGTGTTTCCA+GGG 0.499468 5:+104725161 None:intergenic
AATTGAGTTTAACATGGGGA+TGG 0.501175 5:-104727984 MsG0580029983.01.T01:five_prime_UTR
AAATCAGCTCAACAAGAGTA+AGG 0.504095 5:-104721100 MsG0580029983.01.T01:intron
TATGGATGTTCCTTTGCCGT+TGG 0.505581 5:-104725221 MsG0580029983.01.T01:CDS
AGATTTCTTACCGTTCTTGA+AGG 0.506663 5:+104727409 None:intergenic
ATTTGTAATGGTTGATCCAT+GGG 0.506778 5:-104723395 MsG0580029983.01.T01:CDS
TGAGTTTAACATGGGGATGG+AGG 0.509727 5:-104727981 MsG0580029983.01.T01:five_prime_UTR
AATTTGTAATGGTTGATCCA+TGG 0.509741 5:-104723396 MsG0580029983.01.T01:CDS
ATCAATTGGAACTAAAGATA+AGG 0.513456 5:-104727472 MsG0580029983.01.T01:five_prime_UTR
ATGCGTAAATGCATAAAAGT+AGG 0.517451 5:+104725006 None:intergenic
CAATCACTTCATCTGCGGTA+AGG 0.530213 5:+104720934 None:intergenic
TATGTTAAGTGATTTGCCCC+TGG 0.532067 5:-104721684 MsG0580029983.01.T01:intron
AAAGGCTACTGTGTAATTGG+AGG 0.533237 5:-104724154 MsG0580029983.01.T01:CDS
AATCCATGCCTCATATATGT+TGG 0.537519 5:+104721727 None:intergenic
ACAAATAGAAGTGTGGACTC+TGG 0.543174 5:+104723144 None:intergenic
CTCTCTCGGATTTGCAGCGG+CGG 0.546246 5:-104725691 MsG0580029983.01.T01:intron
CTTCCAACATATATGAGGCA+TGG 0.547682 5:-104721730 MsG0580029983.01.T01:CDS
AAAGAGTAGTGTACCTCCCA+TGG 0.549198 5:+104723379 None:intergenic
GGGTCACGTACCCGTTAAGA+AGG 0.549355 5:+104727911 None:intergenic
TGTAAATCTAATTTATCCAA+CGG 0.549631 5:+104725205 None:intergenic
AATGACATAATTGTATTCGA+TGG 0.557636 5:+104723437 None:intergenic
GGTAGAATTGAGTTTAACAT+GGG 0.569029 5:-104727989 MsG0580029983.01.T01:five_prime_UTR
CGTAAATGCATAAAAGTAGG+AGG 0.572929 5:+104725009 None:intergenic
TTCAGGGAATGCATTGCAAG+AGG 0.573672 5:-104720972 MsG0580029983.01.T01:intron
TAGAAGTGTGGACTCTGGAT+AGG 0.573771 5:+104723149 None:intergenic
GGGTAGAATTGAGTTTAACA+TGG 0.575120 5:-104727990 MsG0580029983.01.T01:five_prime_UTR
CGCTGCAAATCCGAGAGAGA+AGG 0.589157 5:+104725695 None:intergenic
TCTAATTTATCCAACGGCAA+AGG 0.595678 5:+104725211 None:intergenic
CCCGTTAAGAAGGAGTTCGA+TGG 0.609273 5:+104727921 None:intergenic
GTAGTCTGCATACGCAGAGA+AGG 0.611006 5:-104721551 MsG0580029983.01.T01:CDS
TGTAACTAATGACTCTTGCA+TGG 0.620569 5:+104720831 None:intergenic
GTTAAGAAGGAGTTCGATGG+AGG 0.626781 5:+104727924 None:intergenic
AGAGATGCGTTGAATTCCAA+AGG 0.627625 5:-104724172 MsG0580029983.01.T01:CDS
CATTCATCAACCCAAAGACA+AGG 0.631623 5:-104727510 MsG0580029983.01.T01:five_prime_UTR
AAGGCTACTGTGTAATTGGA+GGG 0.631668 5:-104724153 MsG0580029983.01.T01:CDS
ATAGGACAGTCAAAGTGCGT+TGG 0.633138 5:+104723167 None:intergenic
GAGACAGGGTTGATATCTAG+AGG 0.637148 5:-104723121 MsG0580029983.01.T01:intron
GCAAATCCGAGAGAGAAGGA+AGG 0.638291 5:+104725699 None:intergenic
ATACTTGTTTGTGTTTCCAG+GGG 0.642927 5:+104725162 None:intergenic
ACACTTCTATTTGTGAGACA+GGG 0.644435 5:-104723135 MsG0580029983.01.T01:CDS
CAAATCCGAGAGAGAAGGAA+GGG 0.644850 5:+104725700 None:intergenic
CAAGATTTATGTCATTCTGG+TGG 0.645156 5:-104725049 MsG0580029983.01.T01:CDS
TGTAATGGTTGATCCATGGG+AGG 0.658001 5:-104723392 MsG0580029983.01.T01:intron
CTGTCTCACAAATAGAAGTG+TGG 0.660331 5:+104723137 None:intergenic
CTTCTCTCTCGGATTTGCAG+CGG 0.663065 5:-104725694 MsG0580029983.01.T01:five_prime_UTR
ATAATCAATCACTTCATCTG+CGG 0.664620 5:+104720929 None:intergenic
GTAGAATTGAGTTTAACATG+GGG 0.731602 5:-104727988 MsG0580029983.01.T01:five_prime_UTR
AACGGCGGCAGTGACAACGA+CGG 0.739353 5:+104727444 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTTTATTAATAAAA+AGG - Chr5:104726799-104726818 MsG0580029983.01.T01:intron 0.0%
!! AATATAAAATGACAAAATTA+TGG + Chr5:104727099-104727118 None:intergenic 10.0%
!! AGAAATAAAACATTTATTTA+GGG + Chr5:104725856-104725875 None:intergenic 10.0%
!! TTAAACAAAACAAATAATAA+AGG + Chr5:104723575-104723594 None:intergenic 10.0%
!! AATATCCTTTATTATTTGTA+TGG + Chr5:104726135-104726154 None:intergenic 15.0%
!! AGATAAAGTAATAAATAGTA+AGG + Chr5:104726085-104726104 None:intergenic 15.0%
!! ATAAAGTAATAAATAGTAAG+GGG + Chr5:104726083-104726102 None:intergenic 15.0%
!! ATATGGTATAATATTGAATT+TGG + Chr5:104724203-104724222 None:intergenic 15.0%
!! CAGAAATAAAACATTTATTT+AGG + Chr5:104725857-104725876 None:intergenic 15.0%
!! GATAAAGTAATAAATAGTAA+GGG + Chr5:104726084-104726103 None:intergenic 15.0%
!! TAATTATACAGATAATACTA+GGG + Chr5:104726442-104726461 None:intergenic 15.0%
!! TATATGTCATTACAATATTA+AGG - Chr5:104726029-104726048 MsG0580029983.01.T01:intron 15.0%
!! TATTATTGAAAACATTAACA+AGG + Chr5:104721852-104721871 None:intergenic 15.0%
!! TATTGTAATGACATATAATT+TGG + Chr5:104726026-104726045 None:intergenic 15.0%
!! TTGTTAAATTTGAATATGTT+TGG + Chr5:104722860-104722879 None:intergenic 15.0%
!!! AATCAAACTTTTATTTAGAA+TGG - Chr5:104725003-104725022 MsG0580029983.01.T01:CDS 15.0%
!!! ATCTGTATAATTAGTTTTAT+GGG - Chr5:104726449-104726468 MsG0580029983.01.T01:intron 15.0%
!!! CACTTAATAACTTATTTTTT+GGG + Chr5:104725099-104725118 None:intergenic 15.0%
!!! TATCTGTATAATTAGTTTTA+TGG - Chr5:104726448-104726467 MsG0580029983.01.T01:intron 15.0%
!!! TCATTTTATATTTTTACTCT+AGG - Chr5:104727107-104727126 MsG0580029983.01.T01:intron 15.0%
!!! TTAAATTATATTTTTCTGCT+TGG - Chr5:104724806-104724825 MsG0580029983.01.T01:intron 15.0%
!!! TTTTATGAAATAGAGTTTTA+AGG - Chr5:104721337-104721356 MsG0580029983.01.T01:intron 15.0%
!!! TTTTTTCTTATTCTTTCTTT+TGG - Chr5:104721544-104721563 MsG0580029983.01.T01:CDS 15.0%
!! AAAAAAAAAAAAAATGAGCG+AGG - Chr5:104722619-104722638 MsG0580029983.01.T01:intron 20.0%
!! AATAAGATGAAAACAACTTA+TGG - Chr5:104723323-104723342 MsG0580029983.01.T01:intron 20.0%
!! ACTTTATAAGAGATAAATCA+TGG - Chr5:104727657-104727676 MsG0580029983.01.T01:intron 20.0%
!! AGAATGAATATGATAGAATA+AGG + Chr5:104724659-104724678 None:intergenic 20.0%
!! ATAAAACATTTATTTAGGGA+TGG + Chr5:104725852-104725871 None:intergenic 20.0%
!! ATAAAATTTGATCACAACAA+TGG - Chr5:104722332-104722351 MsG0580029983.01.T01:intron 20.0%
!! CAGAAACAAAACATTTATAA+AGG + Chr5:104725811-104725830 None:intergenic 20.0%
!! CCAAAAAATAAGTTATTAAG+TGG - Chr5:104725097-104725116 MsG0580029983.01.T01:intron 20.0%
!! CTAAATAAAAGTTTGATTAC+AGG + Chr5:104725001-104725020 None:intergenic 20.0%
!! CTAATTATACAGATAATACT+AGG + Chr5:104726443-104726462 None:intergenic 20.0%
!! CTTATAAAGTAAACAAAACA+AGG + Chr5:104727647-104727666 None:intergenic 20.0%
!! GATAAATAATTCCTACAAAT+TGG - Chr5:104727834-104727853 MsG0580029983.01.T01:intron 20.0%
!! GTATTATAAGTCAAACTATT+TGG + Chr5:104723379-104723398 None:intergenic 20.0%
!! TATAACCACATAAAAATGAA+AGG + Chr5:104725492-104725511 None:intergenic 20.0%
!! TGAAAGATGTCTTATAAAAA+GGG + Chr5:104725938-104725957 None:intergenic 20.0%
!! TGTAAATCTAATTTATCCAA+CGG + Chr5:104723505-104723524 None:intergenic 20.0%
!! TGTTTAATAAACAGTTGATT+TGG - Chr5:104727915-104727934 MsG0580029983.01.T01:intron 20.0%
!! TGTTTAATCTCAATGAAATT+AGG + Chr5:104721686-104721705 None:intergenic 20.0%
!! TTGAAAGATGTCTTATAAAA+AGG + Chr5:104725939-104725958 None:intergenic 20.0%
!! TTTAAATTTGCATAAAAGCA+TGG + Chr5:104727526-104727545 None:intergenic 20.0%
!! TTTATAGTATTGCTTGATAT+AGG + Chr5:104725181-104725200 None:intergenic 20.0%
!! TTTCAATATATATTTAGGGA+GGG - Chr5:104726353-104726372 MsG0580029983.01.T01:intron 20.0%
!!! ATGAAGTTGGTAATAAATAA+AGG + Chr5:104724330-104724349 None:intergenic 20.0%
!!! ATTGTTGTGATCAAATTTTA+TGG + Chr5:104722333-104722352 None:intergenic 20.0%
!!! ATTGTTTTCGTATAAGTTAT+AGG - Chr5:104723266-104723285 MsG0580029983.01.T01:intron 20.0%
!!! CCAAAACAAAGAATTTTTTT+AGG + Chr5:104721763-104721782 None:intergenic 20.0%
!!! CCACTTAATAACTTATTTTT+TGG + Chr5:104725100-104725119 None:intergenic 20.0%
!!! CCTAAAAAAATTCTTTGTTT+TGG - Chr5:104721760-104721779 MsG0580029983.01.T01:intron 20.0%
!!! CTGAATGTTTTTTATCTATA+TGG + Chr5:104724220-104724239 None:intergenic 20.0%
!!! GTTTTCCATACAAATAATAA+AGG - Chr5:104726127-104726146 MsG0580029983.01.T01:intron 20.0%
!!! TAATTTGGACAAATGAATTT+TGG + Chr5:104726011-104726030 None:intergenic 20.0%
!!! TCTGTATAATTAGTTTTATG+GGG - Chr5:104726450-104726469 MsG0580029983.01.T01:intron 20.0%
!!! TGCTTTTATTACTAATTTCA+GGG - Chr5:104727719-104727738 MsG0580029983.01.T01:intron 20.0%
!!! TTCATAAAACTCTAAGAAAT+AGG + Chr5:104721326-104721345 None:intergenic 20.0%
!!! TTGCACTACATTTTTTTTTT+AGG - Chr5:104727548-104727567 MsG0580029983.01.T01:five_prime_UTR 20.0%
!!! TTTCTAATGATTTTAGGTTA+TGG - Chr5:104723468-104723487 MsG0580029983.01.T01:intron 20.0%
!!! TTTTCAATATATATTTAGGG+AGG - Chr5:104726352-104726371 MsG0580029983.01.T01:intron 20.0%
! AAAATGAAAGGTAAGAAATC+AGG + Chr5:104725480-104725499 None:intergenic 25.0%
! AAATATTTGTAGCGATGAAT+GGG + Chr5:104721158-104721177 None:intergenic 25.0%
! AATCGAAGGATTAAAATTGA+TGG - Chr5:104727421-104727440 MsG0580029983.01.T01:five_prime_UTR 25.0%
! AATGACATAATTGTATTCGA+TGG + Chr5:104725273-104725292 None:intergenic 25.0%
! AATGTAAACTGAATGAAAGT+AGG + Chr5:104723123-104723142 None:intergenic 25.0%
! ACAAATGACATCTTAGAATT+TGG + Chr5:104724848-104724867 None:intergenic 25.0%
! AGAATAAGGATGATAGAATA+AGG + Chr5:104724645-104724664 None:intergenic 25.0%
! AGCTGAACTAAATAAACTAA+GGG - Chr5:104721416-104721435 MsG0580029983.01.T01:intron 25.0%
! ATATATTATGTCCTGTACTT+AGG - Chr5:104723180-104723199 MsG0580029983.01.T01:CDS 25.0%
! ATCAATTGGAACTAAAGATA+AGG - Chr5:104721235-104721254 MsG0580029983.01.T01:intron 25.0%
! ATCATATTCATTCTTGTATC+CGG - Chr5:104724665-104724684 MsG0580029983.01.T01:intron 25.0%
! ATCGTTTATATTTAGATCTG+AGG - Chr5:104726855-104726874 MsG0580029983.01.T01:intron 25.0%
! ATGTGGTTATAAATTACTAC+AGG - Chr5:104725501-104725520 MsG0580029983.01.T01:intron 25.0%
! ATTGCTAAAGTGACATAATT+TGG - Chr5:104726220-104726239 MsG0580029983.01.T01:intron 25.0%
! CAAAAGTTCAGAATTTGTAA+TGG - Chr5:104725300-104725319 MsG0580029983.01.T01:intron 25.0%
! CAAGTATAATTTATGTTCTC+TGG + Chr5:104727805-104727824 None:intergenic 25.0%
! CCATTCTAATTTAAAAACCA+GGG - Chr5:104725678-104725697 MsG0580029983.01.T01:intron 25.0%
! CTTCAATATTGAAACAATTG+AGG - Chr5:104725403-104725422 MsG0580029983.01.T01:intron 25.0%
! CTTCATTTATTCTTGTCAAA+GGG - Chr5:104722382-104722401 MsG0580029983.01.T01:intron 25.0%
! GAAAGTCGATTAGAAAAAAA+CGG + Chr5:104725215-104725234 None:intergenic 25.0%
! GTAAATGGTAAATGATTATC+AGG + Chr5:104724020-104724039 None:intergenic 25.0%
! GTAACTAATGTTGTATAGAA+AGG + Chr5:104726181-104726200 None:intergenic 25.0%
! GTAATTTCAGGGAATATAAT+TGG - Chr5:104726305-104726324 MsG0580029983.01.T01:intron 25.0%
! GTCAAAATAGTTAGGTTATT+AGG - Chr5:104724880-104724899 MsG0580029983.01.T01:intron 25.0%
! TAAAAAGAGATTAAGAAAGC+CGG + Chr5:104725716-104725735 None:intergenic 25.0%
! TAAAGTGACATAATTTGGAA+CGG - Chr5:104726225-104726244 MsG0580029983.01.T01:intron 25.0%
! TAAATATTTGTAGCGATGAA+TGG + Chr5:104721159-104721178 None:intergenic 25.0%
! TAACTTCTGCTTATAGAATT+TGG - Chr5:104720937-104720956 MsG0580029983.01.T01:CDS 25.0%
! TAATATTCTGAATGAGAATC+AGG - Chr5:104727209-104727228 MsG0580029983.01.T01:intron 25.0%
! TAATCATTTACCATTTACAG+TGG - Chr5:104724022-104724041 MsG0580029983.01.T01:intron 25.0%
! TAGAATGACATAATTTGGAA+CGG + Chr5:104725988-104726007 None:intergenic 25.0%
! TAGCTGAACTAAATAAACTA+AGG - Chr5:104721415-104721434 MsG0580029983.01.T01:intron 25.0%
! TCGAATACAATTATGTCATT+TGG - Chr5:104725273-104725292 MsG0580029983.01.T01:intron 25.0%
! TCTTCATTTATTCTTGTCAA+AGG - Chr5:104722381-104722400 MsG0580029983.01.T01:intron 25.0%
! TTAAGAGAATTGTTGAAGTT+TGG - Chr5:104727995-104728014 MsG0580029983.01.T01:five_prime_UTR 25.0%
! TTAAGCAAGAATTTGAGTAT+TGG + Chr5:104724075-104724094 None:intergenic 25.0%
! TTACCAACTTCATTAAGTTA+TGG - Chr5:104724337-104724356 MsG0580029983.01.T01:intron 25.0%
! TTACTATTATATCACAACAG+TGG - Chr5:104722306-104722325 MsG0580029983.01.T01:intron 25.0%
! TTCAATATATATTTAGGGAG+GGG - Chr5:104726354-104726373 MsG0580029983.01.T01:intron 25.0%
! TTCTACAACATGTAATTTCA+GGG - Chr5:104726294-104726313 MsG0580029983.01.T01:intron 25.0%
! TTGAAAACATTAACAAGGAA+CGG + Chr5:104721847-104721866 None:intergenic 25.0%
! TTTCTACAACATGTAATTTC+AGG - Chr5:104726293-104726312 MsG0580029983.01.T01:intron 25.0%
! TTTGATTACAGGACAAAATT+GGG + Chr5:104724990-104725009 None:intergenic 25.0%
! TTTGGTAGAATGACATAATT+TGG + Chr5:104725993-104726012 None:intergenic 25.0%
!! AAATTGAATATTGAAGCACT+TGG + Chr5:104724472-104724491 None:intergenic 25.0%
!! AAGCTAGAGAAATTTTTATG+AGG + Chr5:104721789-104721808 None:intergenic 25.0%
!! AGCTAGAGAAATTTTTATGA+GGG + Chr5:104721788-104721807 None:intergenic 25.0%
!! ATCAAGAGTGAAATTGTTTT+TGG - Chr5:104723975-104723994 MsG0580029983.01.T01:intron 25.0%
!! TTGATGAATGAATGAGTTTT+GGG + Chr5:104721187-104721206 None:intergenic 25.0%
!!! AACTTATTTTTTGGGATAGT+TGG + Chr5:104725091-104725110 None:intergenic 25.0%
!!! ATGGACTATAATTTTGTCAT+TGG - Chr5:104727057-104727076 MsG0580029983.01.T01:intron 25.0%
!!! CAAACTTTTATTTAGAATGG+AGG - Chr5:104725006-104725025 MsG0580029983.01.T01:CDS 25.0%
!!! CCTGGTTTTTAAATTAGAAT+GGG + Chr5:104725680-104725699 None:intergenic 25.0%
!!! CTGCTTTTATTACTAATTTC+AGG - Chr5:104727718-104727737 MsG0580029983.01.T01:intron 25.0%
!!! CTGGTTTTTAAATTAGAATG+GGG + Chr5:104725679-104725698 None:intergenic 25.0%
!!! CTGTATAATTAGTTTTATGG+GGG - Chr5:104726451-104726470 MsG0580029983.01.T01:intron 25.0%
!!! CTTATTTTCATAAGTTCTCA+AGG + Chr5:104723309-104723328 None:intergenic 25.0%
!!! CTTGTGTTTCTAATGATTTT+AGG - Chr5:104723462-104723481 MsG0580029983.01.T01:intron 25.0%
!!! TAGTATGTGTTTTAACTTCA+GGG - Chr5:104726378-104726397 MsG0580029983.01.T01:intron 25.0%
!!! TATAATTTTGTCATTGGTTG+TGG - Chr5:104727063-104727082 MsG0580029983.01.T01:intron 25.0%
!!! TCTTACCTTTCATTTTTATG+TGG - Chr5:104725484-104725503 MsG0580029983.01.T01:intron 25.0%
!!! TGTTTTGTTTAATTGTGTGA+GGG - Chr5:104723583-104723602 MsG0580029983.01.T01:intron 25.0%
!!! TTGTTTTGTTTAATTGTGTG+AGG - Chr5:104723582-104723601 MsG0580029983.01.T01:intron 25.0%
!!! TTTTTTACATGCGAAAAGAA+TGG + Chr5:104725383-104725402 None:intergenic 25.0%
AAACTATTTGGAAGAGCTTA+TGG + Chr5:104723367-104723386 None:intergenic 30.0%
AACCAACTGTCAAAATAGTT+AGG - Chr5:104724872-104724891 MsG0580029983.01.T01:intron 30.0%
AAGATATGGCAATTCTTGAA+AGG + Chr5:104727242-104727261 None:intergenic 30.0%
AAGGGACAATGAAATATATC+AGG + Chr5:104725920-104725939 None:intergenic 30.0%
AATCATGGTGATTTAACAGA+AGG - Chr5:104727672-104727691 MsG0580029983.01.T01:intron 30.0%
AATTGGTTGTATGTTGAACT+TGG - Chr5:104726322-104726341 MsG0580029983.01.T01:intron 30.0%
AATTTGTAATGGTTGATCCA+TGG - Chr5:104725311-104725330 MsG0580029983.01.T01:intron 30.0%
ACTAAATAAACTAAGGGGTT+TGG - Chr5:104721422-104721441 MsG0580029983.01.T01:intron 30.0%
AGACCATAACTTAATGAAGT+TGG + Chr5:104724343-104724362 None:intergenic 30.0%
AGGGACAATGAAATATATCA+GGG + Chr5:104725919-104725938 None:intergenic 30.0%
ATAATCAATCACTTCATCTG+CGG + Chr5:104727781-104727800 None:intergenic 30.0%
ATCATGGTGATTTAACAGAA+GGG - Chr5:104727673-104727692 MsG0580029983.01.T01:intron 30.0%
ATCTATAAGCATAAGCAGTA+AGG + Chr5:104721025-104721044 None:intergenic 30.0%
ATCTTCTGACACTAAACATA+CGG + Chr5:104726533-104726552 None:intergenic 30.0%
ATGCGTAAATGCATAAAAGT+AGG + Chr5:104723704-104723723 None:intergenic 30.0%
ATTCCATTAAGTGGTACTTA+GGG + Chr5:104724427-104724446 None:intergenic 30.0%
ATTTGTAATGGTTGATCCAT+GGG - Chr5:104725312-104725331 MsG0580029983.01.T01:intron 30.0%
CAGCAATAATTAACCATCTA+TGG - Chr5:104721961-104721980 MsG0580029983.01.T01:intron 30.0%
CCATATTTCATAACCAATCA+CGG + Chr5:104727480-104727499 None:intergenic 30.0%
CCCATTCTAATTTAAAAACC+AGG - Chr5:104725677-104725696 MsG0580029983.01.T01:intron 30.0%
CGTAAAACTGACAATGTAAA+TGG + Chr5:104722079-104722098 None:intergenic 30.0%
CTAAATAAACTAAGGGGTTT+GGG - Chr5:104721423-104721442 MsG0580029983.01.T01:intron 30.0%
CTAGCAACTTATATTCAGTT+CGG - Chr5:104721907-104721926 MsG0580029983.01.T01:intron 30.0%
CTGAATCCATCCTTAAATAT+AGG - Chr5:104725889-104725908 MsG0580029983.01.T01:intron 30.0%
CTTAATTCCACAACACTTAA+AGG + Chr5:104723916-104723935 None:intergenic 30.0%
GAATGATGCATACAAGAAAA+AGG - Chr5:104724591-104724610 MsG0580029983.01.T01:intron 30.0%
GCATTAGTTGATTGATCAAT+TGG - Chr5:104721221-104721240 MsG0580029983.01.T01:intron 30.0%
GCTGAACTAAATAAACTAAG+GGG - Chr5:104721417-104721436 MsG0580029983.01.T01:intron 30.0%
GGTAGAATTGAGTTTAACAT+GGG - Chr5:104720718-104720737 MsG0580029983.01.T01:three_prime_UTR 30.0%
GTAGAATTGAGTTTAACATG+GGG - Chr5:104720719-104720738 MsG0580029983.01.T01:three_prime_UTR 30.0%
GTTTGATTACAGGACAAAAT+TGG + Chr5:104724991-104725010 None:intergenic 30.0%
TAATACAGACCAGAAGAATT+TGG - Chr5:104722247-104722266 MsG0580029983.01.T01:intron 30.0%
TAGATGGTTAATTATTGCTG+TGG + Chr5:104721961-104721980 None:intergenic 30.0%
TAGCTGAACAAAATAAAACC+AGG - Chr5:104721462-104721481 MsG0580029983.01.T01:intron 30.0%
TCAATATATATTTAGGGAGG+GGG - Chr5:104726355-104726374 MsG0580029983.01.T01:intron 30.0%
TGCATAGAGTAGTTTATTCA+AGG + Chr5:104724169-104724188 None:intergenic 30.0%
TGTGGTATAGTGAGAAAAAA+AGG + Chr5:104722119-104722138 None:intergenic 30.0%
TTCAAATGTCATCAATGTGA+CGG + Chr5:104725751-104725770 None:intergenic 30.0%
TTCAGCTAGAATTGAGTTTA+AGG - Chr5:104722808-104722827 MsG0580029983.01.T01:intron 30.0%
TTCTTCTTCCAACATATATG+AGG - Chr5:104726972-104726991 MsG0580029983.01.T01:intron 30.0%
TTTAAATTAGAATGGGGAAG+AGG + Chr5:104725673-104725692 None:intergenic 30.0%
TTTATGCATTTACGCATGTT+CGG - Chr5:104723707-104723726 MsG0580029983.01.T01:intron 30.0%
TTTGGCCAAAATCAATTCTT+AGG + Chr5:104722762-104722781 None:intergenic 30.0%
! AAGAGTATATGCAGAGATTA+TGG - Chr5:104727132-104727151 MsG0580029983.01.T01:intron 30.0%
! AGTAAAGTTGACACTTGTTA+AGG - Chr5:104722156-104722175 MsG0580029983.01.T01:intron 30.0%
! ATATTTTGTGACAATCAGTC+AGG + Chr5:104723164-104723183 None:intergenic 30.0%
! CTAGAGAAATTTTTATGAGG+GGG + Chr5:104721786-104721805 None:intergenic 30.0%
! GCTAGAGAAATTTTTATGAG+GGG + Chr5:104721787-104721806 None:intergenic 30.0%
! GTCTAATTTCCTTTTCAGAA+TGG - Chr5:104725646-104725665 MsG0580029983.01.T01:intron 30.0%
! TAAATAGTAAGGGGCATAAT+AGG + Chr5:104726074-104726093 None:intergenic 30.0%
! TAAGTGTTGTGGAATTAAGA+GGG - Chr5:104723917-104723936 MsG0580029983.01.T01:intron 30.0%
! TACAAATTCTGAACTTTTGC+AGG + Chr5:104725299-104725318 None:intergenic 30.0%
! TGATGTTCTTACAAGTTTTC+CGG + Chr5:104724687-104724706 None:intergenic 30.0%
! TTAAGTGTTGTGGAATTAAG+AGG - Chr5:104723916-104723935 MsG0580029983.01.T01:intron 30.0%
!! AGCATCCTAAGAATTGATTT+TGG - Chr5:104722754-104722773 MsG0580029983.01.T01:intron 30.0%
!! ATCTGCATGGTTAATTTGTT+AGG - Chr5:104726943-104726962 MsG0580029983.01.T01:intron 30.0%
!! CCCTGGTTTTTAAATTAGAA+TGG + Chr5:104725681-104725700 None:intergenic 30.0%
!! GTTCTAAAGAGTTGGTATAT+TGG - Chr5:104724271-104724290 MsG0580029983.01.T01:intron 30.0%
!! GTTGATGAATGAATGAGTTT+TGG + Chr5:104721188-104721207 None:intergenic 30.0%
!! TGCATTTAGCTTGTGAATTA+TGG + Chr5:104727971-104727990 None:intergenic 30.0%
!!! AACCTAACTATTTTGACAGT+TGG + Chr5:104724877-104724896 None:intergenic 30.0%
!!! CTTTTTCAACGTAGACAAAT+AGG + Chr5:104721607-104721626 None:intergenic 30.0%
!!! GTAGTATGTGTTTTAACTTC+AGG - Chr5:104726377-104726396 MsG0580029983.01.T01:intron 30.0%
!!! TCTTGTTTTTGACCACATTA+AGG - Chr5:104727335-104727354 MsG0580029983.01.T01:intron 30.0%
!!! TTATTTTTGCATAGGATCTG+TGG - Chr5:104724298-104724317 MsG0580029983.01.T01:intron 30.0%
!!! TTGGACAGTTATTTTTGCAT+AGG - Chr5:104724290-104724309 MsG0580029983.01.T01:intron 30.0%
!!! TTTTTTTGACGAGTGAAATG+TGG - Chr5:104727293-104727312 MsG0580029983.01.T01:intron 30.0%
AAAGAGACTCCAAATTCTTC+TGG + Chr5:104722259-104722278 None:intergenic 35.0%
AAATCAGCTCAACAAGAGTA+AGG - Chr5:104727607-104727626 MsG0580029983.01.T01:intron 35.0%
AACTAATGCTCCTTGTCTTT+GGG + Chr5:104721210-104721229 None:intergenic 35.0%
AATCCATGCCTCATATATGT+TGG + Chr5:104726983-104727002 None:intergenic 35.0%
AATTGAGTTTAACATGGGGA+TGG - Chr5:104720723-104720742 MsG0580029983.01.T01:three_prime_UTR 35.0%
ACAACAATAGTGTCAGTAGT+TGG - Chr5:104721504-104721523 MsG0580029983.01.T01:CDS 35.0%
ACACTTCTATTTGTGAGACA+GGG - Chr5:104725572-104725591 MsG0580029983.01.T01:intron 35.0%
ACAGAAACCTCAATTTCTCA+AGG + Chr5:104722675-104722694 None:intergenic 35.0%
ACATAATTGGCTGGTGTATT+TGG - Chr5:104726475-104726494 MsG0580029983.01.T01:intron 35.0%
ACATACTTGTTTGTGTTTCC+AGG + Chr5:104723550-104723569 None:intergenic 35.0%
ACATGCGTTAAAACGAAACA+TGG - Chr5:104727265-104727284 MsG0580029983.01.T01:intron 35.0%
AGATTTCTTACCGTTCTTGA+AGG + Chr5:104721301-104721320 None:intergenic 35.0%
ATACTTGTTTGTGTTTCCAG+GGG + Chr5:104723548-104723567 None:intergenic 35.0%
ATGATGTGTTAGAATCTGCA+TGG - Chr5:104726930-104726949 MsG0580029983.01.T01:intron 35.0%
ATGCAGCTTTCTAACTAAGA+GGG - Chr5:104724615-104724634 MsG0580029983.01.T01:intron 35.0%
ATTAAGTGGTAGCACACAAT+TGG - Chr5:104725111-104725130 MsG0580029983.01.T01:intron 35.0%
CAAAATCAGTTCAATTCGTC+TGG + Chr5:104726908-104726927 None:intergenic 35.0%
CAAGATTTATGTCATTCTGG+TGG - Chr5:104723658-104723677 MsG0580029983.01.T01:intron 35.0%
CATACTTGTTTGTGTTTCCA+GGG + Chr5:104723549-104723568 None:intergenic 35.0%
CATTAGTGTAGAATCTCTGA+AGG - Chr5:104726683-104726702 MsG0580029983.01.T01:intron 35.0%
CATTCCATTAAGTGGTACTT+AGG + Chr5:104724428-104724447 None:intergenic 35.0%
CGAACTGAATATAAGTTGCT+AGG + Chr5:104721909-104721928 None:intergenic 35.0%
CGTAAATGCATAAAAGTAGG+AGG + Chr5:104723701-104723720 None:intergenic 35.0%
GACAATGAAATATATCAGGG+GGG + Chr5:104725916-104725935 None:intergenic 35.0%
GCATATGATGTCCAATTTGT+AGG + Chr5:104727848-104727867 None:intergenic 35.0%
GGACAATGAAATATATCAGG+GGG + Chr5:104725917-104725936 None:intergenic 35.0%
GGGACAATGAAATATATCAG+GGG + Chr5:104725918-104725937 None:intergenic 35.0%
GGGTAGAATTGAGTTTAACA+TGG - Chr5:104720717-104720736 MsG0580029983.01.T01:three_prime_UTR 35.0%
GGTGTATTAGAAGAGAAAGT+AGG - Chr5:104722204-104722223 MsG0580029983.01.T01:intron 35.0%
GTAACAAAAGCAACAGCAAT+TGG - Chr5:104722693-104722712 MsG0580029983.01.T01:intron 35.0%
GTGGAACACTGAAGTTATAT+AGG - Chr5:104724739-104724758 MsG0580029983.01.T01:intron 35.0%
TATGCAGCTTTCTAACTAAG+AGG - Chr5:104724614-104724633 MsG0580029983.01.T01:intron 35.0%
TCAAATGTCATCAATGTGAC+GGG + Chr5:104725750-104725769 None:intergenic 35.0%
TCAATGAGCAATCTATTGTG+AGG - Chr5:104724764-104724783 MsG0580029983.01.T01:intron 35.0%
TCACGATAACTATATCTGTC+TGG - Chr5:104725454-104725473 MsG0580029983.01.T01:intron 35.0%
TCTAATTTATCCAACGGCAA+AGG + Chr5:104723499-104723518 None:intergenic 35.0%
TCTCTAACCTTGAGAAATTG+AGG - Chr5:104722665-104722684 MsG0580029983.01.T01:intron 35.0%
TGAAGGACAAAAAGAGACAA+CGG + Chr5:104721284-104721303 None:intergenic 35.0%
TGAGTTTGTACTGTGTAAAG+AGG - Chr5:104724364-104724383 MsG0580029983.01.T01:intron 35.0%
TGATGACATTTGAAGGAGAT+GGG - Chr5:104725757-104725776 MsG0580029983.01.T01:intron 35.0%
TGGCAAGATTTATGTCATTC+TGG - Chr5:104723655-104723674 MsG0580029983.01.T01:intron 35.0%
TGGTACTTAGGGTAATTAGA+AGG + Chr5:104724416-104724435 None:intergenic 35.0%
TGTAACTAATGACTCTTGCA+TGG + Chr5:104727879-104727898 None:intergenic 35.0%
TTAACGCATGTCAGAAGATA+TGG + Chr5:104727256-104727275 None:intergenic 35.0%
TTACCCTAAGTACCACTTAA+TGG - Chr5:104724421-104724440 MsG0580029983.01.T01:intron 35.0%
TTCTCAAGGTTAGAGAAGAT+AGG + Chr5:104722661-104722680 None:intergenic 35.0%
TTCTTGTATGCATCATTCAC+AGG + Chr5:104724589-104724608 None:intergenic 35.0%
! AAGTGTTGTGGAATTAAGAG+GGG - Chr5:104723918-104723937 MsG0580029983.01.T01:intron 35.0%
! AATGGACCATCTAAAATCAG+AGG + Chr5:104726417-104726436 None:intergenic 35.0%
! ATGACATAATTTGGAACGGA+TGG + Chr5:104725984-104726003 None:intergenic 35.0%
! ATGGACCATCTAAAATCAGA+GGG + Chr5:104726416-104726435 None:intergenic 35.0%
! ATTAGGTGAAAGTGCATGAA+TGG - Chr5:104724897-104724916 MsG0580029983.01.T01:intron 35.0%
! CCGTGATTGGTTATGAAATA+TGG - Chr5:104727477-104727496 MsG0580029983.01.T01:five_prime_UTR 35.0%
! CTCTTTTTGTCCTTCAAGAA+CGG - Chr5:104721288-104721307 MsG0580029983.01.T01:intron 35.0%
! CTGATGAGATCTTTTTGTCA+TGG - Chr5:104727370-104727389 MsG0580029983.01.T01:intron 35.0%
! GTCACATTGATGACATTTGA+AGG - Chr5:104725750-104725769 MsG0580029983.01.T01:intron 35.0%
! GTCATTGGTTGTGGAAAAAA+TGG - Chr5:104727072-104727091 MsG0580029983.01.T01:intron 35.0%
! TAGAGTTTTTCACGTAACTG+TGG + Chr5:104722137-104722156 None:intergenic 35.0%
! TCTGATTTTAGATGGTCCAT+TGG - Chr5:104726416-104726435 MsG0580029983.01.T01:intron 35.0%
! TGAATATTGAAGCACTTGGA+AGG + Chr5:104724468-104724487 None:intergenic 35.0%
! TTGATGACATTTGAAGGAGA+TGG - Chr5:104725756-104725775 MsG0580029983.01.T01:intron 35.0%
!! AAAACTTTGAGACAACACTC+AGG - Chr5:104722182-104722201 MsG0580029983.01.T01:intron 35.0%
!! AAACTTTGAGACAACACTCA+GGG - Chr5:104722183-104722202 MsG0580029983.01.T01:intron 35.0%
!! CAATGAAATTAGGCTTTGAG+AGG + Chr5:104721676-104721695 None:intergenic 35.0%
!! CCAACTCTTTAGAACATCAT+TGG + Chr5:104724266-104724285 None:intergenic 35.0%
!! CCAATGATGTTCTAAAGAGT+TGG - Chr5:104724263-104724282 MsG0580029983.01.T01:intron 35.0%
!! CTTGTTGAGCTGATTTGATT+TGG + Chr5:104727603-104727622 None:intergenic 35.0%
!! TGAGTGTTGTCTCAAAGTTT+TGG + Chr5:104722183-104722202 None:intergenic 35.0%
!! TTTGGTGTTGTAAAACTAGC+AGG - Chr5:104727933-104727952 MsG0580029983.01.T01:five_prime_UTR 35.0%
!! TTTTCTGCCTTTAAGTGTTG+TGG - Chr5:104723906-104723925 MsG0580029983.01.T01:intron 35.0%
!!! TTTTTGGGATAGTTGGTTCT+TGG + Chr5:104725084-104725103 None:intergenic 35.0%
AAAGGCTACTGTGTAATTGG+AGG - Chr5:104724553-104724572 MsG0580029983.01.T01:intron 40.0%
AAATACATGCTTGGCATGTG+TGG - Chr5:104724720-104724739 MsG0580029983.01.T01:intron 40.0%
AAGGCTACTGTGTAATTGGA+GGG - Chr5:104724554-104724573 MsG0580029983.01.T01:intron 40.0%
ACAGATAATACTAGGGCCAA+TGG + Chr5:104726435-104726454 None:intergenic 40.0%
ACCACTTAATGGAATGTCGT+TGG - Chr5:104724432-104724451 MsG0580029983.01.T01:intron 40.0%
ACCAGGACAGCTAAGTATAA+AGG - Chr5:104721479-104721498 MsG0580029983.01.T01:intron 40.0%
ACCTCGAAAACCACTGTAAA+TGG + Chr5:104724035-104724054 None:intergenic 40.0%
AGAGATGCGTTGAATTCCAA+AGG - Chr5:104724535-104724554 MsG0580029983.01.T01:intron 40.0%
ATCCAGGAATTCCAAAGGAA+TGG + Chr5:104726737-104726756 None:intergenic 40.0%
CAACTAATGCTCCTTGTCTT+TGG + Chr5:104721211-104721230 None:intergenic 40.0%
CAATCTATGACAGCCATAGA+TGG + Chr5:104721977-104721996 None:intergenic 40.0%
CACACTTCTATTTGTGAGAC+AGG - Chr5:104725571-104725590 MsG0580029983.01.T01:intron 40.0%
CACAGTCAAAAAATCCGAGA+TGG + Chr5:104722964-104722983 None:intergenic 40.0%
CATTCATCAACCCAAAGACA+AGG - Chr5:104721197-104721216 MsG0580029983.01.T01:intron 40.0%
CCAAAATCCAGGAATTCCAA+AGG + Chr5:104726742-104726761 None:intergenic 40.0%
CCACATTAAGGTCAAACTGT+AGG - Chr5:104727347-104727366 MsG0580029983.01.T01:intron 40.0%
CCTACAGTTTGACCTTAATG+TGG + Chr5:104727350-104727369 None:intergenic 40.0%
CTGTCTCACAAATAGAAGTG+TGG + Chr5:104725573-104725592 None:intergenic 40.0%
CTTCCAACATATATGAGGCA+TGG - Chr5:104726977-104726996 MsG0580029983.01.T01:intron 40.0%
GATGACATTTGAAGGAGATG+GGG - Chr5:104725758-104725777 MsG0580029983.01.T01:intron 40.0%
GCATGGGAATTTCAAATCGA+AGG - Chr5:104727407-104727426 MsG0580029983.01.T01:intron 40.0%
GTGATACTGTTATTCTGCAG+TGG - Chr5:104723635-104723654 MsG0580029983.01.T01:intron 40.0%
GTTCTCACACAAAAGCCATT+TGG - Chr5:104724936-104724955 MsG0580029983.01.T01:intron 40.0%
TCAGAGTCTCTATTACCAAG+TGG + Chr5:104725053-104725072 None:intergenic 40.0%
TCCAAAGGCTACTGTGTAAT+TGG - Chr5:104724550-104724569 MsG0580029983.01.T01:intron 40.0%
TCCAATTACACAGTAGCCTT+TGG + Chr5:104724554-104724573 None:intergenic 40.0%
TCCATCGAACTCCTTCTTAA+CGG - Chr5:104720785-104720804 MsG0580029983.01.T01:three_prime_UTR 40.0%
TCCTTTATACTTAGCTGTCC+TGG + Chr5:104721483-104721502 None:intergenic 40.0%
TCGTTGAAGACTTGTCTGTT+AGG + Chr5:104725616-104725635 None:intergenic 40.0%
TTCTGCTTGGCATTTAGACA+AGG - Chr5:104724819-104724838 MsG0580029983.01.T01:intron 40.0%
TTTCAACGTAGACAACCAAG+AGG + Chr5:104722513-104722532 None:intergenic 40.0%
! AATGGGAACAATCTGGTTTC+TGG + Chr5:104721141-104721160 None:intergenic 40.0%
! ACAAATAGAAGTGTGGACTC+TGG + Chr5:104725566-104725585 None:intergenic 40.0%
! ACCATTTACAGTGGTTTTCG+AGG - Chr5:104724031-104724050 MsG0580029983.01.T01:intron 40.0%
! CGTTTCTTCAAGCTTGCTTT+GGG - Chr5:104723768-104723787 MsG0580029983.01.T01:intron 40.0%
! GGTACTAAAGCGTTCATAAG+TGG - Chr5:104726506-104726525 MsG0580029983.01.T01:intron 40.0%
! TATGTTAAGTGATTTGCCCC+TGG - Chr5:104727023-104727042 MsG0580029983.01.T01:intron 40.0%
! TCGTTTCTTCAAGCTTGCTT+TGG - Chr5:104723767-104723786 MsG0580029983.01.T01:intron 40.0%
! TTCCTCCCTCTGATTTTAGA+TGG - Chr5:104726408-104726427 MsG0580029983.01.T01:intron 40.0%
!! CTGGTGTATTTGGTTCTGTA+TGG - Chr5:104726485-104726504 MsG0580029983.01.T01:intron 40.0%
!! GAATTGATTTTGGCCAAACG+TGG - Chr5:104722764-104722783 MsG0580029983.01.T01:intron 40.0%
!! GTTTTATGGGGGCACATAAT+TGG - Chr5:104726462-104726481 MsG0580029983.01.T01:intron 40.0%
!!! AGTCCATTTTTTCCACAACC+AGG + Chr5:104727044-104727063 None:intergenic 40.0%
!!! CCTTTGGAATTCCTGGATTT+TGG - Chr5:104726739-104726758 MsG0580029983.01.T01:intron 40.0%
!!! GTCCATTTTTTCCACAACCA+GGG + Chr5:104727043-104727062 None:intergenic 40.0%
!!! TCCATTTTTTCCACAACCAG+GGG + Chr5:104727042-104727061 None:intergenic 40.0%
AAAGAGTAGTGTACCTCCCA+TGG + Chr5:104725331-104725350 None:intergenic 45.0%
AACCACTTTCCAGCTCTACT+TGG + Chr5:104724129-104724148 None:intergenic 45.0%
ACCAGGGAAAGAAGAAACAC+CGG - Chr5:104725694-104725713 MsG0580029983.01.T01:five_prime_UTR 45.0%
ACTTTCCAGCTCTACTTGGT+GGG + Chr5:104724125-104724144 None:intergenic 45.0%
AGCCATTTGGACTTGAAGCA+TGG - Chr5:104724949-104724968 MsG0580029983.01.T01:intron 45.0%
AGCGATGAATGGGAACAATC+TGG + Chr5:104721148-104721167 None:intergenic 45.0%
AGGACAAAAAGAGACAACGG+CGG + Chr5:104721281-104721300 None:intergenic 45.0%
ATAGGACAGTCAAAGTGCGT+TGG + Chr5:104725543-104725562 None:intergenic 45.0%
ATTAGTAATGAACCCTCCCC+TGG - Chr5:104723529-104723548 MsG0580029983.01.T01:intron 45.0%
CAAATCCGAGAGAGAAGGAA+GGG + Chr5:104723010-104723029 None:intergenic 45.0%
CAAGAGAGAAGATGACAACC+AGG + Chr5:104722482-104722501 None:intergenic 45.0%
CAATCACTTCATCTGCGGTA+AGG + Chr5:104727776-104727795 None:intergenic 45.0%
CAGGAATTCCAAAGGAATGG+AGG + Chr5:104726734-104726753 None:intergenic 45.0%
CCATCGAACTCCTTCTTAAC+GGG - Chr5:104720786-104720805 MsG0580029983.01.T01:three_prime_UTR 45.0%
CCATTGAACTCTAGACCACT+TGG - Chr5:104725035-104725054 MsG0580029983.01.T01:CDS 45.0%
CGCTATAAGCACCTAAGTAC+AGG + Chr5:104723194-104723213 None:intergenic 45.0%
CTACACAACGCATAAGTACC+TGG + Chr5:104726773-104726792 None:intergenic 45.0%
CTGAAGGTCATGCTTGTTTG+TGG - Chr5:104726699-104726718 MsG0580029983.01.T01:intron 45.0%
GCATCTCTTGCAAGCTCTAT+TGG + Chr5:104724523-104724542 None:intergenic 45.0%
GCCAACGACATTCCATTAAG+TGG + Chr5:104724436-104724455 None:intergenic 45.0%
GGCAACATGTGCAAATGCAT+GGG - Chr5:104727391-104727410 MsG0580029983.01.T01:intron 45.0%
GGGGGTCCTATATTTAAGGA+TGG + Chr5:104725898-104725917 None:intergenic 45.0%
GTCCATGCTTCAAGTCCAAA+TGG + Chr5:104724954-104724973 None:intergenic 45.0%
GTTAAGAAGGAGTTCGATGG+AGG + Chr5:104720786-104720805 None:intergenic 45.0%
TAAGCAGAAAGCCGGAGTAT+GGG + Chr5:104720819-104720838 None:intergenic 45.0%
TATGGATGTTCCTTTGCCGT+TGG - Chr5:104723486-104723505 MsG0580029983.01.T01:intron 45.0%
TATGTCATTCTGGTGGCAAC+TGG - Chr5:104723665-104723684 MsG0580029983.01.T01:intron 45.0%
TCAGGGGGGTCCTATATTTA+AGG + Chr5:104725902-104725921 None:intergenic 45.0%
TCTGATCTCCTCCATTCCTT+TGG - Chr5:104726723-104726742 MsG0580029983.01.T01:intron 45.0%
TGAAGCTGTAAGCAGAAAGC+CGG + Chr5:104720827-104720846 None:intergenic 45.0%
TGAGTTTAACATGGGGATGG+AGG - Chr5:104720726-104720745 MsG0580029983.01.T01:three_prime_UTR 45.0%
TGGCAACATGTGCAAATGCA+TGG - Chr5:104727390-104727409 MsG0580029983.01.T01:intron 45.0%
TGGTCAGGAATCCAAAATCC+AGG + Chr5:104726753-104726772 None:intergenic 45.0%
TGTAATGGTTGATCCATGGG+AGG - Chr5:104725315-104725334 MsG0580029983.01.T01:intron 45.0%
TTCAGGGAATGCATTGCAAG+AGG - Chr5:104727735-104727754 MsG0580029983.01.T01:intron 45.0%
TTCGCTGAAGCTAGAATTCG+TGG + Chr5:104722921-104722940 None:intergenic 45.0%
TTGTTTGTGTTTCCAGGGGA+GGG + Chr5:104723544-104723563 None:intergenic 45.0%
! AATTGGTGCCCATCAAAGAG+GGG - Chr5:104722710-104722729 MsG0580029983.01.T01:intron 45.0%
! CAATTGGTGCCCATCAAAGA+GGG - Chr5:104722709-104722728 MsG0580029983.01.T01:intron 45.0%
! CCAAGTGGTCTAGAGTTCAA+TGG + Chr5:104725038-104725057 None:intergenic 45.0%
! CTACTTGGTGGGAAAAGACT+TGG + Chr5:104724114-104724133 None:intergenic 45.0%
! GACCATCTAAAATCAGAGGG+AGG + Chr5:104726413-104726432 None:intergenic 45.0%
! GGAAGAGGACCATTCTGAAA+AGG + Chr5:104725658-104725677 None:intergenic 45.0%
! TAGAAGTGTGGACTCTGGAT+AGG + Chr5:104725561-104725580 None:intergenic 45.0%
! TGGATTTTGGATTCCTGACC+AGG - Chr5:104726752-104726771 MsG0580029983.01.T01:intron 45.0%
!! CTCCATTCCTTTGGAATTCC+TGG - Chr5:104726732-104726751 MsG0580029983.01.T01:intron 45.0%
!! GAACGGCTGTTTTCAGTTAC+GGG + Chr5:104721830-104721849 None:intergenic 45.0%
!! GAGACAGGGTTGATATCTAG+AGG - Chr5:104725586-104725605 MsG0580029983.01.T01:intron 45.0%
!! GGAACGGCTGTTTTCAGTTA+CGG + Chr5:104721831-104721850 None:intergenic 45.0%
!!! GGTTTTGGGTGATTCCATCT+CGG - Chr5:104722947-104722966 MsG0580029983.01.T01:intron 45.0%
!! ATGTTATATATTAAATTTAA+AGG + Chr5:104721716-104721735 None:intergenic 5.0%
!!! AAAAATATAATTTAAGTTTA+AGG + Chr5:104724801-104724820 None:intergenic 5.0%
!!! TATTTTTCAATATATATTTA+GGG - Chr5:104726349-104726368 MsG0580029983.01.T01:intron 5.0%
!!! TTATTTTTCAATATATATTT+AGG - Chr5:104726348-104726367 MsG0580029983.01.T01:intron 5.0%
ACGTTCTTCTCAGCCGTGAT+TGG - Chr5:104727464-104727483 MsG0580029983.01.T01:five_prime_UTR 50.0%
CAACGCATAAGTACCTGGTC+AGG + Chr5:104726768-104726787 None:intergenic 50.0%
CACCAAGTAGAGCTGGAAAG+TGG - Chr5:104724124-104724143 MsG0580029983.01.T01:CDS 50.0%
CACTTTCCAGCTCTACTTGG+TGG + Chr5:104724126-104724145 None:intergenic 50.0%
CAGAACCCTTCCTTCTCTCT+CGG - Chr5:104723002-104723021 MsG0580029983.01.T01:intron 50.0%
CCCGTTAAGAAGGAGTTCGA+TGG + Chr5:104720789-104720808 None:intergenic 50.0%
CGACTTTGCCCCTCTTTGAT+GGG + Chr5:104722721-104722740 None:intergenic 50.0%
CTTCTCTCTCGGATTTGCAG+CGG - Chr5:104723013-104723032 MsG0580029983.01.T01:intron 50.0%
CTTGTTTGTGTTTCCAGGGG+AGG + Chr5:104723545-104723564 None:intergenic 50.0%
GAACACACTGTCTTCTCTCC+TGG - Chr5:104722461-104722480 MsG0580029983.01.T01:intron 50.0%
GCAAATCCGAGAGAGAAGGA+AGG + Chr5:104723011-104723030 None:intergenic 50.0%
GCCCCTGGTTGTGGAAAAAA+TGG - Chr5:104727038-104727057 MsG0580029983.01.T01:intron 50.0%
GTAAGCAGAAAGCCGGAGTA+TGG + Chr5:104720820-104720839 None:intergenic 50.0%
GTAGTCTGCATACGCAGAGA+AGG - Chr5:104727156-104727175 MsG0580029983.01.T01:intron 50.0%
TCCTTCCTAGCTTCCACGTT+TGG + Chr5:104722780-104722799 None:intergenic 50.0%
TCGACTTTGCCCCTCTTTGA+TGG + Chr5:104722722-104722741 None:intergenic 50.0%
TTTGGCCAAACGTGGAAGCT+AGG - Chr5:104722772-104722791 MsG0580029983.01.T01:intron 50.0%
! AAGTGATTTGCCCCTGGTTG+TGG - Chr5:104727029-104727048 MsG0580029983.01.T01:intron 50.0%
! CTAGCTTCGCTGCTGATTGT+AGG - Chr5:104721802-104721821 MsG0580029983.01.T01:intron 50.0%
! CTTTTCCCACCAAGTAGAGC+TGG - Chr5:104724117-104724136 MsG0580029983.01.T01:CDS 50.0%
! GCAATTGGTGCCCATCAAAG+AGG - Chr5:104722708-104722727 MsG0580029983.01.T01:intron 50.0%
! GGATAGTTGGTTCTTGGCGA+TGG + Chr5:104725078-104725097 None:intergenic 50.0%
! TATGGGGGCACATAATTGGC+TGG - Chr5:104726466-104726485 MsG0580029983.01.T01:intron 50.0%
!! TAGACAACCAAGAGGCGTTC+AGG + Chr5:104722505-104722524 None:intergenic 50.0%
CGCTGCAAATCCGAGAGAGA+AGG + Chr5:104723015-104723034 None:intergenic 55.0%
GCCAAACGTGGAAGCTAGGA+AGG - Chr5:104722776-104722795 MsG0580029983.01.T01:intron 55.0%
GCCGGTGTTTCTTCTTTCCC+TGG + Chr5:104725698-104725717 None:intergenic 55.0%
GGGTCACGTACCCGTTAAGA+AGG + Chr5:104720799-104720818 None:intergenic 55.0%
TCTCTTGCCTGAACGCCTCT+TGG - Chr5:104722495-104722514 MsG0580029983.01.T01:intron 55.0%
! TCAGCGAAACGCGCGGTTTT+GGG - Chr5:104722933-104722952 MsG0580029983.01.T01:intron 55.0%
! TCTAGCTTCAGCGAAACGCG+CGG - Chr5:104722926-104722945 MsG0580029983.01.T01:intron 55.0%
! TTCAGCGAAACGCGCGGTTT+TGG - Chr5:104722932-104722951 MsG0580029983.01.T01:intron 55.0%
AACGGCGGCAGTGACAACGA+CGG + Chr5:104721266-104721285 None:intergenic 60.0%
CGGGTACGTGACCCATACTC+CGG - Chr5:104720805-104720824 MsG0580029983.01.T01:three_prime_UTR 60.0%
CTCTCTCGGATTTGCAGCGG+CGG - Chr5:104723016-104723035 MsG0580029983.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 104720715 104728014 104720715 ID=MsG0580029983.01;Name=MsG0580029983.01
Chr5 mRNA 104720715 104728014 104720715 ID=MsG0580029983.01.T01;Parent=MsG0580029983.01;Name=MsG0580029983.01.T01;_AED=0.49;_eAED=0.53;_QI=297|0.81|0.91|1|0.72|0.66|12|172|249
Chr5 exon 104720715 104720989 104720715 ID=MsG0580029983.01.T01:exon:8954;Parent=MsG0580029983.01.T01
Chr5 exon 104721101 104721159 104721101 ID=MsG0580029983.01.T01:exon:8953;Parent=MsG0580029983.01.T01
Chr5 exon 104721499 104721600 104721499 ID=MsG0580029983.01.T01:exon:8952;Parent=MsG0580029983.01.T01
Chr5 exon 104721685 104721764 104721685 ID=MsG0580029983.01.T01:exon:8951;Parent=MsG0580029983.01.T01
Chr5 exon 104723122 104723206 104723122 ID=MsG0580029983.01.T01:exon:8950;Parent=MsG0580029983.01.T01
Chr5 exon 104723393 104723476 104723393 ID=MsG0580029983.01.T01:exon:8949;Parent=MsG0580029983.01.T01
Chr5 exon 104724117 104724202 104724117 ID=MsG0580029983.01.T01:exon:8948;Parent=MsG0580029983.01.T01
Chr5 exon 104725001 104725074 104725001 ID=MsG0580029983.01.T01:exon:8947;Parent=MsG0580029983.01.T01
Chr5 exon 104725166 104725245 104725166 ID=MsG0580029983.01.T01:exon:8946;Parent=MsG0580029983.01.T01
Chr5 exon 104725692 104725724 104725692 ID=MsG0580029983.01.T01:exon:8945;Parent=MsG0580029983.01.T01
Chr5 exon 104727420 104727587 104727420 ID=MsG0580029983.01.T01:exon:8944;Parent=MsG0580029983.01.T01
Chr5 exon 104727922 104728014 104727922 ID=MsG0580029983.01.T01:exon:8943;Parent=MsG0580029983.01.T01
Chr5 five_prime_UTR 104727922 104728014 104727922 ID=MsG0580029983.01.T01:five_prime_utr;Parent=MsG0580029983.01.T01
Chr5 five_prime_UTR 104727420 104727587 104727420 ID=MsG0580029983.01.T01:five_prime_utr;Parent=MsG0580029983.01.T01
Chr5 five_prime_UTR 104725692 104725724 104725692 ID=MsG0580029983.01.T01:five_prime_utr;Parent=MsG0580029983.01.T01
Chr5 five_prime_UTR 104725243 104725245 104725243 ID=MsG0580029983.01.T01:five_prime_utr;Parent=MsG0580029983.01.T01
Chr5 CDS 104725166 104725242 104725166 ID=MsG0580029983.01.T01:cds;Parent=MsG0580029983.01.T01
Chr5 CDS 104725001 104725074 104725001 ID=MsG0580029983.01.T01:cds;Parent=MsG0580029983.01.T01
Chr5 CDS 104724117 104724202 104724117 ID=MsG0580029983.01.T01:cds;Parent=MsG0580029983.01.T01
Chr5 CDS 104723393 104723476 104723393 ID=MsG0580029983.01.T01:cds;Parent=MsG0580029983.01.T01
Chr5 CDS 104723122 104723206 104723122 ID=MsG0580029983.01.T01:cds;Parent=MsG0580029983.01.T01
Chr5 CDS 104721685 104721764 104721685 ID=MsG0580029983.01.T01:cds;Parent=MsG0580029983.01.T01
Chr5 CDS 104721499 104721600 104721499 ID=MsG0580029983.01.T01:cds;Parent=MsG0580029983.01.T01
Chr5 CDS 104721101 104721159 104721101 ID=MsG0580029983.01.T01:cds;Parent=MsG0580029983.01.T01
Chr5 CDS 104720887 104720989 104720887 ID=MsG0580029983.01.T01:cds;Parent=MsG0580029983.01.T01
Chr5 three_prime_UTR 104720715 104720886 104720715 ID=MsG0580029983.01.T01:three_prime_utr;Parent=MsG0580029983.01.T01
Gene Sequence

>MsG0580029983.01.T01

ATGGATGTTCCTTTGCCGTTGGATAAATTAGATTTACAACTTATTAGTAATGAACCCTCCCCTGGAAACACAAACAATGGCAAGATTTATGTCATTCTGGTGGCAACTGGAAGCTTTAATCCTCCTACTTTTATGCATTTACGCATGTTCGAGCTTGCAAGAGATGCGTTGAATTCCAAAGGCTACTGTGTAATTGGAGGGTACATGTCACCTGTGAATGATGCATACAAGAAAAAGAATCTAATATCTGCTGACCATCGAATACAATTATGTCATTTGGCCTGCAAAAGTTCAGAATTTGTAATGGTTGATCCATGGGAGGCAAATCAAAACACATACCAACGCACTTTGACTGTCCTATCCAGAGTCCACACTTCTATTTGTGAGACAGGGTTGATATCTAGAGGATGTTTTTCTTCTTCCAACATATATGAGGCATGGATTGAGTATAAATCTATTTTCTGTATGTTAAGTGATTTGCCCCTGGTTAAGAGTATATGCAGAGATTATGGAGTAGTCTGCATACGCAGAGAAGGACAAAATGTTGAGAAGACTATATCTGATGATAATATTCTGAATGAGAATCAGGCTAATATTGAAGTTGTAGATGAACTTGTACCAAATCAAATCAGCTCAACAAGAGTAAGGGAATGCATTGCAAGAGGATTATCAATAAAATACCTTACCGCAGATGAAGTGATTGATTATACCAGAGAACATAAATTATACTTGAAATCAGATGATAAATAA
Protein sequence

>MsG0580029983.01.T01

MDVPLPLDKLDLQLISNEPSPGNTNNGKIYVILVATGSFNPPTFMHLRMFELARDALNSKGYCVIGGYMSPVNDAYKKKNLISADHRIQLCHLACKSSEFVMVDPWEANQNTYQRTLTVLSRVHTSICETGLISRGCFSSSNIYEAWIEYKSIFCMLSDLPLVKSICRDYGVVCIRREGQNVEKTISDDNILNENQANIEVVDELVPNQISSTRVRECIARGLSIKYLTADEVIDYTREHKLYLKSDDK*