AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030535.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030535.01.T01 MTR_6g016990 82.040 451 37 5 1 407 93 543 0.0 730
MsG0680030535.01.T02 MTR_6g016990 82.040 451 37 5 1 407 93 543 0.0 730
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030535.01.T01 AT5G38600 47.253 364 121 16 4 318 3 344 2.35e-82 259
MsG0680030535.01.T01 AT5G38600 47.253 364 121 16 4 318 14 355 4.28e-82 259
MsG0680030535.01.T01 AT5G38600 47.238 362 120 16 6 318 108 447 4.21e-81 259
MsG0680030535.01.T01 AT1G67210 47.119 295 113 5 6 258 66 359 4.60e-77 244
MsG0680030535.01.T01 AT1G67210 46.622 296 115 5 6 258 66 361 2.77e-75 240
MsG0680030535.01.T01 AT1G67210 48.018 227 82 3 6 196 66 292 6.29e-62 202
MsG0680030535.01.T02 AT5G38600 47.253 364 121 16 4 318 3 344 2.35e-82 259
MsG0680030535.01.T02 AT5G38600 47.253 364 121 16 4 318 14 355 4.28e-82 259
MsG0680030535.01.T02 AT5G38600 47.238 362 120 16 6 318 108 447 4.21e-81 259
MsG0680030535.01.T02 AT1G67210 47.119 295 113 5 6 258 66 359 4.60e-77 244
MsG0680030535.01.T02 AT1G67210 46.622 296 115 5 6 258 66 361 2.77e-75 240
MsG0680030535.01.T02 AT1G67210 48.018 227 82 3 6 196 66 292 6.29e-62 202

Find 81 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTCCTTTGTTTGTCATT+AGG 0.179767 6:-4888542 MsG0680030535.01.T01:intron
TTGAGTGCTTTAGCCATTTC+TGG 0.185854 6:-4888582 MsG0680030535.01.T01:three_prime_UTR
ATTTCCTTTGTTTGTCATTA+GGG 0.191621 6:-4888541 MsG0680030535.01.T01:intron
TCACCGTTGGGACGAGATTC+TGG 0.285885 6:-4888959 MsG0680030535.01.T01:CDS
TGAAGAGAATGGAATGAAAA+AGG 0.306111 6:+4889007 None:intergenic
CTCCAATCTGCCATTGAATT+AGG 0.326394 6:+4889070 None:intergenic
CAACAGAGATCATCGAGTTT+TGG 0.358171 6:-4889217 MsG0680030535.01.T01:CDS
GATGAGGAGGATCAGCCTTC+TGG 0.372378 6:-4889442 MsG0680030535.01.T01:CDS
GGAATAGGAGCATTTATTCC+TGG 0.373005 6:+4889319 None:intergenic
TAGTCGGAGGTGATGACTAA+TGG 0.377904 6:-4888825 MsG0680030535.01.T01:exon
TTGAAATATCAATAGCGATT+GGG 0.384515 6:+4889251 None:intergenic
TTAAGCTTTGATGGTCCTCC+AGG 0.404618 6:-4889157 MsG0680030535.01.T01:CDS
CTATTGATATTTCAAGGAAC+TGG 0.408639 6:-4889243 MsG0680030535.01.T01:CDS
ACATACAAAGTTACCAGAAA+TGG 0.410231 6:+4888569 None:intergenic
ATAGGCGACTTAAGCTTTGA+TGG 0.421295 6:-4889166 MsG0680030535.01.T01:CDS
CAAGAGGATGGGGAAATTAT+CGG 0.425008 6:-4889385 MsG0680030535.01.T01:CDS
ATGAAAGATTGTGGGCTGCC+AGG 0.425714 6:-4889285 MsG0680030535.01.T01:CDS
CTCCTAATTCAATGGCAGAT+TGG 0.427340 6:-4889072 MsG0680030535.01.T01:CDS
CAATCGCTATTGATATTTCA+AGG 0.431967 6:-4889249 MsG0680030535.01.T01:CDS
TGTTTACCTTCACATCTGTC+AGG 0.434836 6:-4888634 MsG0680030535.01.T01:three_prime_UTR
AAAATGAGTGTTGAATTTCC+AGG 0.435678 6:-4889337 MsG0680030535.01.T01:CDS
CCTCTCATTTACTTGTACAA+TGG 0.440060 6:-4888499 MsG0680030535.01.T01:three_prime_UTR
CCTTTGTTTGTCATTAGGGT+GGG 0.441524 6:-4888537 MsG0680030535.01.T01:intron
CGAGATTCTGGCAGCAGATA+CGG 0.441891 6:-4888947 MsG0680030535.01.T01:CDS
GAATTGTGTCCTGGGTCCCC+TGG 0.446751 6:+4889139 None:intergenic
AAATGTGATGAATTGTGTCC+TGG 0.452816 6:+4889130 None:intergenic
AGTCGGAGGTGATGACTAAT+GGG 0.458483 6:-4888824 MsG0680030535.01.T01:exon
TCCTTTGTTTGTCATTAGGG+TGG 0.459685 6:-4888538 MsG0680030535.01.T01:intron
TCATGTTTCTCCTAATTCAA+TGG 0.466195 6:-4889080 MsG0680030535.01.T01:CDS
CAATTTAACGATAGGTGGTC+AGG 0.469430 6:-4888863 MsG0680030535.01.T01:CDS
TTGGAATTCAGATGAGGATG+AGG 0.470157 6:-4889458 MsG0680030535.01.T01:intron
CATAACAATATTCACTGATA+AGG 0.478212 6:-4889419 MsG0680030535.01.T01:CDS
CATCAACATGATCAGAGAAT+AGG 0.487863 6:-4889184 MsG0680030535.01.T01:CDS
TAATGGGACATGAATCAAAC+AGG 0.490300 6:-4888808 MsG0680030535.01.T01:three_prime_UTR
TTTCATCTCAATTTAACGAT+AGG 0.491582 6:-4888871 MsG0680030535.01.T01:CDS
CTTGAAATATCAATAGCGAT+TGG 0.496336 6:+4889250 None:intergenic
TGAAAGATTGTGGGCTGCCA+GGG 0.508908 6:-4889284 MsG0680030535.01.T01:CDS
CATCTCAATTTAACGATAGG+TGG 0.512936 6:-4888868 MsG0680030535.01.T01:CDS
TGAAATATCAATAGCGATTG+GGG 0.519451 6:+4889252 None:intergenic
CTTCACATCTGTCAGGGACA+TGG 0.529113 6:-4888627 MsG0680030535.01.T01:three_prime_UTR
TTTCAACCTAGGTTTGGTAG+TGG 0.529276 6:-4889103 MsG0680030535.01.T01:CDS
GGGGACACTTCTTCATGCAT+AGG 0.531512 6:+4889034 None:intergenic
TCTGATCATGTTGATGTCCT+CGG 0.537568 6:+4889191 None:intergenic
TCAATGGCAGATTGGAGTAG+TGG 0.544632 6:-4889064 MsG0680030535.01.T01:CDS
CAGATTCTTCAAAGCCAAAA+CGG 0.546637 6:-4889360 MsG0680030535.01.T01:CDS
GTGAATATTGTTATGCCAGA+AGG 0.550245 6:+4889427 None:intergenic
CAATGGCAGATTGGAGTAGT+GGG 0.555165 6:-4889063 MsG0680030535.01.T01:CDS
GTCATCACCTCCGACTATGA+TGG 0.557710 6:+4888831 None:intergenic
GACATGGCAGAACAAGAGGA+TGG 0.558739 6:-4889397 MsG0680030535.01.T01:CDS
AGATACGGAAACTTTAGCTC+TGG 0.560795 6:-4888932 MsG0680030535.01.T01:CDS
AAAATGCCGATGAAAGATTG+TGG 0.562029 6:-4889294 MsG0680030535.01.T01:CDS
AGTTCAGATCAGCGCTCGTA+GGG 0.562790 6:-4888775 MsG0680030535.01.T01:three_prime_UTR
ACATGGCAGAACAAGAGGAT+GGG 0.569930 6:-4889396 MsG0680030535.01.T01:CDS
TAAATTGAGATGAAAGATCT+CGG 0.571397 6:+4888879 None:intergenic
GTTTACCTTCACATCTGTCA+GGG 0.571553 6:-4888633 MsG0680030535.01.T01:three_prime_UTR
GATGGTCCTCCAGGGGACCC+AGG 0.573651 6:-4889148 MsG0680030535.01.T01:CDS
CATGGCAGAACAAGAGGATG+GGG 0.577211 6:-4889395 MsG0680030535.01.T01:CDS
GAGTTCAGATCAGCGCTCGT+AGG 0.578675 6:-4888776 MsG0680030535.01.T01:three_prime_UTR
GGCAGCCCACAATCTTTCAT+CGG 0.582829 6:+4889288 None:intergenic
CTGCCAGAATCTCGTCCCAA+CGG 0.587497 6:+4888956 None:intergenic
AAATGCCGATGAAAGATTGT+GGG 0.588704 6:-4889293 MsG0680030535.01.T01:CDS
TGTTTGAATAATGAAGAGAA+TGG 0.591161 6:+4888996 None:intergenic
ACTCAACTTGCTTAGAACTC+TGG 0.592665 6:+4888599 None:intergenic
TACGGAAACTTTAGCTCTGG+AGG 0.596243 6:-4888929 MsG0680030535.01.T01:CDS
GAATTCAGATGAGGATGAGG+AGG 0.605744 6:-4889455 MsG0680030535.01.T01:intron
TAAGCTTTGATGGTCCTCCA+GGG 0.607201 6:-4889156 MsG0680030535.01.T01:CDS
CGCTGATCTGAACTCACACA+TGG 0.609744 6:+4888784 None:intergenic
TAAGGACATGGCAGAACAAG+AGG 0.610778 6:-4889401 MsG0680030535.01.T01:CDS
CCCACCCTAATGACAAACAA+AGG 0.625392 6:+4888537 None:intergenic
AATGTGATGAATTGTGTCCT+GGG 0.626839 6:+4889131 None:intergenic
TTGTGTCCTGGGTCCCCTGG+AGG 0.637602 6:+4889142 None:intergenic
AAGCTTTGATGGTCCTCCAG+GGG 0.639365 6:-4889155 MsG0680030535.01.T01:CDS
CATGTCCCTGACAGATGTGA+AGG 0.641562 6:+4888628 None:intergenic
GAGACCGTCACCATCATAGT+CGG 0.641582 6:-4888841 MsG0680030535.01.T01:CDS
TTCATTATTCAAACACCGAG+AGG 0.649941 6:-4888988 MsG0680030535.01.T01:CDS
CCATTGTACAAGTAAATGAG+AGG 0.659369 6:+4888499 None:intergenic
ACATGACCACTACCAAACCT+AGG 0.668639 6:+4889097 None:intergenic
ACCTCCGACTATGATGGTGA+CGG 0.669048 6:+4888837 None:intergenic
ACCGTCACCATCATAGTCGG+AGG 0.678476 6:-4888838 MsG0680030535.01.T01:CDS
AATATTCACTGATAAGGACA+TGG 0.704256 6:-4889413 MsG0680030535.01.T01:CDS
GAAATATCAATAGCGATTGG+GGG 0.716240 6:+4889253 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATATATTATTAATTA+AGG - Chr6:4889488-4889507 MsG0680030535.01.T01:intron 0.0%
!! ACAATACAAAAATTATAATT+TGG + Chr6:4890058-4890077 None:intergenic 10.0%
!! TATATTTAACATAACTTTAT+TGG - Chr6:4892763-4892782 MsG0680030535.01.T01:intron 10.0%
!! TATTTATTTACATTACAAAA+AGG - Chr6:4888999-4889018 MsG0680030535.01.T01:CDS 10.0%
!!! AGAATAATTATTTTCTTAAT+TGG + Chr6:4892314-4892333 None:intergenic 10.0%
!!! ATGAAATTTTTTAATACAAT+TGG + Chr6:4888668-4888687 None:intergenic 10.0%
!! AAAGCATATATAAAATGTTA+AGG + Chr6:4890122-4890141 None:intergenic 15.0%
!! TAATAATTGAAGGATAAATT+TGG + Chr6:4890814-4890833 None:intergenic 15.0%
!! TTACTTTGTATTATTTAGTA+TGG - Chr6:4889226-4889245 MsG0680030535.01.T01:CDS 15.0%
!!! AAGTACTTATCTTATTTAAT+CGG + Chr6:4891302-4891321 None:intergenic 15.0%
!!! AATATTTTTGCAATAGAATA+TGG - Chr6:4893834-4893853 MsG0680030535.01.T01:CDS 15.0%
!!! ATAAGTACTTTTCTTAAATA+GGG + Chr6:4890758-4890777 None:intergenic 15.0%
!!! ATTATACAACTATTTTGATT+GGG - Chr6:4889837-4889856 MsG0680030535.01.T01:intron 15.0%
!!! TATTTTTGGATTGATATTTA+CGG - Chr6:4892687-4892706 MsG0680030535.01.T01:intron 15.0%
!!! TTAACATTTTATATATGCTT+TGG - Chr6:4890121-4890140 MsG0680030535.01.T01:intron 15.0%
!!! TTTATTTTTTTATATTCCAG+TGG - Chr6:4890337-4890356 MsG0680030535.01.T01:intron 15.0%
!! AAGAATAAGAACAATATTTG+TGG - Chr6:4891142-4891161 MsG0680030535.01.T01:intron 20.0%
!! AGTTTACATGTTTGTTTATA+TGG + Chr6:4892435-4892454 None:intergenic 20.0%
!! ATATACCAAACAAGAAAAAA+TGG + Chr6:4892748-4892767 None:intergenic 20.0%
!! ATCAGAAGAAACATATTTAT+TGG + Chr6:4891068-4891087 None:intergenic 20.0%
!! ATGTAAATAAATAATCCAAG+AGG + Chr6:4888992-4889011 None:intergenic 20.0%
!! ATTATTTCCATAATCTACTT+GGG + Chr6:4891500-4891519 None:intergenic 20.0%
!! GTAAATAATAAACAACCATA+TGG + Chr6:4892401-4892420 None:intergenic 20.0%
!! TACTCACTTATTTACTATTA+AGG + Chr6:4888710-4888729 None:intergenic 20.0%
!! TAGTAAATAAGTGAGTAAAT+AGG - Chr6:4888713-4888732 MsG0680030535.01.T01:three_prime_UTR 20.0%
!! TATTCTTATGTTTATTGTGT+AGG + Chr6:4891129-4891148 None:intergenic 20.0%
!! TTAGAGAATTTCTCAAAATA+AGG - Chr6:4891451-4891470 MsG0680030535.01.T01:intron 20.0%
!! TTAGATCTTAAACTATACTA+AGG + Chr6:4891202-4891221 None:intergenic 20.0%
!! TTCTCAAAATAAGGAAAATA+GGG - Chr6:4891460-4891479 MsG0680030535.01.T01:intron 20.0%
!! TTTCTCAAAATAAGGAAAAT+AGG - Chr6:4891459-4891478 MsG0680030535.01.T01:intron 20.0%
!!! AGACATTAAAATTTTACAAG+AGG - Chr6:4890932-4890951 MsG0680030535.01.T01:intron 20.0%
!!! ATAGAATATGGTTTTATTTG+TGG - Chr6:4893846-4893865 MsG0680030535.01.T01:CDS 20.0%
!!! ATTTTATCGTTTTCATACAT+TGG - Chr6:4893578-4893597 MsG0680030535.01.T01:intron 20.0%
!!! ATTTTGAGAAATTCTCTAAT+TGG + Chr6:4891450-4891469 None:intergenic 20.0%
!!! CTTAATTGGTTTATTATCAA+TGG + Chr6:4892300-4892319 None:intergenic 20.0%
!!! GACATTAAAATTTTACAAGA+GGG - Chr6:4890933-4890952 MsG0680030535.01.T01:intron 20.0%
!!! GATAAGTACTTTTCTTAAAT+AGG + Chr6:4890759-4890778 None:intergenic 20.0%
!!! GATTATACAACTATTTTGAT+TGG - Chr6:4889836-4889855 MsG0680030535.01.T01:intron 20.0%
!!! GTATATTGTATTCTTTGTTT+TGG - Chr6:4892262-4892281 MsG0680030535.01.T01:intron 20.0%
!!! GTTTTTGAATTATATGCATA+TGG - Chr6:4892552-4892571 MsG0680030535.01.T01:intron 20.0%
!!! TTGCTTCAATATCATATTTT+TGG - Chr6:4892673-4892692 MsG0680030535.01.T01:intron 20.0%
!!! TTTTATCGTTTTCATACATT+GGG - Chr6:4893579-4893598 MsG0680030535.01.T01:intron 20.0%
! AACAATACTTACATCGTAAT+TGG - Chr6:4892602-4892621 MsG0680030535.01.T01:intron 25.0%
! ACAATACTTACATCGTAATT+GGG - Chr6:4892603-4892622 MsG0680030535.01.T01:intron 25.0%
! AGGATAATGAACATGATATT+TGG - Chr6:4888952-4888971 MsG0680030535.01.T01:CDS 25.0%
! ATGAGATTTATACACACATA+AGG - Chr6:4891977-4891996 MsG0680030535.01.T01:intron 25.0%
! CAATTATTAAGAGAGAGAAA+TGG - Chr6:4890825-4890844 MsG0680030535.01.T01:intron 25.0%
! CATAACAATATTCACTGATA+AGG - Chr6:4892821-4892840 MsG0680030535.01.T01:intron 25.0%
! CGACTGTAATTTAAAGAAAT+AGG + Chr6:4889064-4889083 None:intergenic 25.0%
! GATTATTTCCATAATCTACT+TGG + Chr6:4891501-4891520 None:intergenic 25.0%
! GTATGCTAATAATCATTACA+AGG - Chr6:4888932-4888951 MsG0680030535.01.T01:CDS 25.0%
! TAAATTGAGATGAAAGATCT+CGG + Chr6:4893364-4893383 None:intergenic 25.0%
! TATACTAAGGATTCTCTTAA+GGG + Chr6:4891189-4891208 None:intergenic 25.0%
! TATATCTTCTTTCACTGTTT+AGG + Chr6:4891928-4891947 None:intergenic 25.0%
! TGTTGTATTTAAATGTCATC+TGG - Chr6:4892488-4892507 MsG0680030535.01.T01:intron 25.0%
! TGTTTGAATAATGAAGAGAA+TGG + Chr6:4893247-4893266 None:intergenic 25.0%
! TTATTCTTCATAAAACCACA+AGG - Chr6:4892327-4892346 MsG0680030535.01.T01:intron 25.0%
! TTCAGATCAGATGAATAATA+TGG - Chr6:4891391-4891410 MsG0680030535.01.T01:intron 25.0%
! TTCTCTCTCTTAATAATTGA+AGG + Chr6:4890824-4890843 None:intergenic 25.0%
! TTGAAATATCAATAGCGATT+GGG + Chr6:4892992-4893011 None:intergenic 25.0%
! TTTCATCTCAATTTAACGAT+AGG - Chr6:4893369-4893388 MsG0680030535.01.T01:intron 25.0%
!! AGAATACATTTTTAACGTCT+AGG - Chr6:4890645-4890664 MsG0680030535.01.T01:intron 25.0%
!! ATTTCCTTTGTTTGTCATTA+GGG - Chr6:4893699-4893718 MsG0680030535.01.T01:intron 25.0%
!! TATTTACTTATGACTTGTGA+TGG - Chr6:4892063-4892082 MsG0680030535.01.T01:intron 25.0%
!! TATTTCCTTTGTTTGTCATT+AGG - Chr6:4893698-4893717 MsG0680030535.01.T01:intron 25.0%
!! TTTTGCAAAACTCTTATTCT+TGG - Chr6:4891699-4891718 MsG0680030535.01.T01:CDS 25.0%
!!! AAACATCTGTAGTGTTTTAA+TGG + Chr6:4889793-4889812 None:intergenic 25.0%
!!! AAGTGGTTGATGTTTTTTAT+AGG + Chr6:4891850-4891869 None:intergenic 25.0%
!!! GGTTTTCATTGATTGAAATT+TGG - Chr6:4888539-4888558 MsG0680030535.01.T01:intron 25.0%
!!! TAGGTCTTCATGTTTTTAAT+GGG - Chr6:4890664-4890683 MsG0680030535.01.T01:intron 25.0%
AAAAATGTTAGTCCGATAGA+TGG - Chr6:4889120-4889139 MsG0680030535.01.T01:CDS 30.0%
AATATTCACTGATAAGGACA+TGG - Chr6:4892827-4892846 MsG0680030535.01.T01:intron 30.0%
AATGGAATGAAAAAGGCTTT+GGG + Chr6:4893229-4893248 None:intergenic 30.0%
AATTGGACTTACATTTGATG+AGG + Chr6:4888651-4888670 None:intergenic 30.0%
ACATACAAAGTTACCAGAAA+TGG + Chr6:4893674-4893693 None:intergenic 30.0%
ACTTTATTGGAATTCAGATG+AGG - Chr6:4892776-4892795 MsG0680030535.01.T01:intron 30.0%
AGATGTTACTAGATGTTACT+AGG + Chr6:4891574-4891593 None:intergenic 30.0%
AGCTAGTAAAAATAAGCTTC+AGG - Chr6:4888583-4888602 MsG0680030535.01.T01:three_prime_UTR 30.0%
ATATAGGCATTATCATAGTG+TGG - Chr6:4889985-4890004 MsG0680030535.01.T01:intron 30.0%
ATATGCAAGAGAAGTTCAAA+TGG - Chr6:4892459-4892478 MsG0680030535.01.T01:intron 30.0%
ATCAGAACAACTTGTAGAAA+AGG + Chr6:4888508-4888527 None:intergenic 30.0%
ATGTTACTAGATGTTACTAG+GGG + Chr6:4891572-4891591 None:intergenic 30.0%
CAAGAAAAAATGGAAACCAA+AGG + Chr6:4892738-4892757 None:intergenic 30.0%
CAATCGCTATTGATATTTCA+AGG - Chr6:4892991-4893010 MsG0680030535.01.T01:intron 30.0%
CGAATTAGAATGTAGAATGA+AGG + Chr6:4888885-4888904 None:intergenic 30.0%
CTATACTAAGGATTCTCTTA+AGG + Chr6:4891190-4891209 None:intergenic 30.0%
CTATTGATATTTCAAGGAAC+TGG - Chr6:4892997-4893016 MsG0680030535.01.T01:intron 30.0%
CTCTTAAATCAACAGTGTTA+TGG + Chr6:4890033-4890052 None:intergenic 30.0%
CTTGAAATATCAATAGCGAT+TGG + Chr6:4892993-4893012 None:intergenic 30.0%
CTTTCCATGAATAAACAACT+AGG + Chr6:4891235-4891254 None:intergenic 30.0%
GAATGTCTATGGATCATTTA+TGG - Chr6:4890080-4890099 MsG0680030535.01.T01:CDS 30.0%
GATGTTACTAGATGTTACTA+GGG + Chr6:4891573-4891592 None:intergenic 30.0%
GATTAAAGTAATCAAGTGAC+AGG + Chr6:4891894-4891913 None:intergenic 30.0%
GATTCACAAACTAACAACAA+TGG - Chr6:4891265-4891284 MsG0680030535.01.T01:intron 30.0%
GTTTATTATTTACTCACGCT+TGG - Chr6:4892408-4892427 MsG0680030535.01.T01:intron 30.0%
GTTTATTCATGGAAAGTTGA+CGG - Chr6:4891239-4891258 MsG0680030535.01.T01:intron 30.0%
TAATCACAGAGAAGTTCTAT+AGG - Chr6:4891671-4891690 MsG0680030535.01.T01:CDS 30.0%
TAGTTGTATAATCAGACTAG+TGG + Chr6:4889829-4889848 None:intergenic 30.0%
TATAAGCTCTGTTATCAATG+TGG - Chr6:4889394-4889413 MsG0680030535.01.T01:CDS 30.0%
TATGATATATCATCAACTCG+TGG - Chr6:4891544-4891563 MsG0680030535.01.T01:intron 30.0%
TATTAAGAGAGAGAAATGGT+TGG - Chr6:4890829-4890848 MsG0680030535.01.T01:intron 30.0%
TCAGAACAACTTGTAGAAAA+GGG + Chr6:4888507-4888526 None:intergenic 30.0%
TCATAAGACACAAGTAGTTT+GGG - Chr6:4891744-4891763 MsG0680030535.01.T01:CDS 30.0%
TCATGTTTCTCCTAATTCAA+TGG - Chr6:4893160-4893179 MsG0680030535.01.T01:intron 30.0%
TCTTATGATTCCCTTAGTTA+GGG - Chr6:4890852-4890871 MsG0680030535.01.T01:intron 30.0%
TCTTTAAATTACAGTCGTTC+TGG - Chr6:4889067-4889086 MsG0680030535.01.T01:CDS 30.0%
TGAAATATCAATAGCGATTG+GGG + Chr6:4892991-4893010 None:intergenic 30.0%
TGAAGAGAATGGAATGAAAA+AGG + Chr6:4893236-4893255 None:intergenic 30.0%
TGATTATATCATCCTTGAGA+CGG - Chr6:4892240-4892259 MsG0680030535.01.T01:intron 30.0%
TTAACTACTTTGCACTTTGA+AGG + Chr6:4891001-4891020 None:intergenic 30.0%
TTATTGTGTAGGATCTATGA+TGG + Chr6:4891118-4891137 None:intergenic 30.0%
TTCATAAGACACAAGTAGTT+TGG - Chr6:4891743-4891762 MsG0680030535.01.T01:CDS 30.0%
TTGTATTGTGAGAATGTCTA+TGG - Chr6:4890069-4890088 MsG0680030535.01.T01:CDS 30.0%
TTGTTCTGATGTATAATGTC+TGG - Chr6:4888518-4888537 MsG0680030535.01.T01:three_prime_UTR 30.0%
TTTATTCATGGAAAGTTGAC+GGG - Chr6:4891240-4891259 MsG0680030535.01.T01:intron 30.0%
! AGTAGTACTTTCCCATTTTA+TGG - Chr6:4892371-4892390 MsG0680030535.01.T01:intron 30.0%
! GTTGAATGAAAGTATGTGAA+TGG - Chr6:4889318-4889337 MsG0680030535.01.T01:CDS 30.0%
! TAGGGTCTTATGAATAAGAA+TGG + Chr6:4890740-4890759 None:intergenic 30.0%
! TGTTTCTATCATTCATTGAC+TGG + Chr6:4889101-4889120 None:intergenic 30.0%
! TTGTGTCTTATGAACTTTTG+TGG + Chr6:4891737-4891756 None:intergenic 30.0%
!! AAAATGAGTGTTGAATTTCC+AGG - Chr6:4892903-4892922 MsG0680030535.01.T01:intron 30.0%
!! CTAGGTCTTCATGTTTTTAA+TGG - Chr6:4890663-4890682 MsG0680030535.01.T01:intron 30.0%
!! GTTATTTTACCAAGATATCC+TGG + Chr6:4892206-4892225 None:intergenic 30.0%
!! TAACATCTGTCAACTGATTT+TGG - Chr6:4891586-4891605 MsG0680030535.01.T01:intron 30.0%
!! TATGATGGATGATCATTTCT+TGG + Chr6:4891103-4891122 None:intergenic 30.0%
!!! ACTATTTTGATTGGGTCTAT+AGG - Chr6:4889845-4889864 MsG0680030535.01.T01:intron 30.0%
!!! CACATTTTAGTTTTCAACCT+AGG - Chr6:4893126-4893145 MsG0680030535.01.T01:intron 30.0%
!!! CTATTTTGATTGGGTCTATA+GGG - Chr6:4889846-4889865 MsG0680030535.01.T01:intron 30.0%
!!! GCTTAAGCTTTTGAGATAAT+TGG + Chr6:4889291-4889310 None:intergenic 30.0%
!!! GGTTTCCATTTTTTCTTGTT+TGG - Chr6:4892740-4892759 MsG0680030535.01.T01:intron 30.0%
!!! TGAATATGTTTTTTCTGCTC+AGG - Chr6:4888749-4888768 MsG0680030535.01.T01:three_prime_UTR 30.0%
!!! TGGTTGATGTTTTTTATAGG+AGG + Chr6:4891847-4891866 None:intergenic 30.0%
!!! TTTAGTTTTCAACCTAGGTT+TGG - Chr6:4893131-4893150 MsG0680030535.01.T01:intron 30.0%
AAAATGCCGATGAAAGATTG+TGG - Chr6:4892946-4892965 MsG0680030535.01.T01:intron 35.0%
AAATGCCGATGAAAGATTGT+GGG - Chr6:4892947-4892966 MsG0680030535.01.T01:intron 35.0%
AAATGTGATGAATTGTGTCC+TGG + Chr6:4893113-4893132 None:intergenic 35.0%
AATGTGATGAATTGTGTCCT+GGG + Chr6:4893112-4893131 None:intergenic 35.0%
ACAAGAGGGTCTTACATATA+GGG - Chr6:4890947-4890966 MsG0680030535.01.T01:intron 35.0%
ACATGAATCAAAATCTTCCG+TGG - Chr6:4888830-4888849 MsG0680030535.01.T01:exon 35.0%
ATAATACCGAGTAGGATTAC+GGG + Chr6:4890509-4890528 None:intergenic 35.0%
ATGAACCGCAATTGAAACAT+CGG + Chr6:4890387-4890406 None:intergenic 35.0%
ATGGAATGAAAAAGGCTTTG+GGG + Chr6:4893228-4893247 None:intergenic 35.0%
ATTCATCTGATCTGAACACT+AGG + Chr6:4891387-4891406 None:intergenic 35.0%
CAGATTCTTCAAAGCCAAAA+CGG - Chr6:4892880-4892899 MsG0680030535.01.T01:intron 35.0%
CATCAACATGATCAGAGAAT+AGG - Chr6:4893056-4893075 MsG0680030535.01.T01:intron 35.0%
CATCTCAATTTAACGATAGG+TGG - Chr6:4893372-4893391 MsG0680030535.01.T01:intron 35.0%
CCATTGTACAAGTAAATGAG+AGG + Chr6:4893744-4893763 None:intergenic 35.0%
CCTCTCATTTACTTGTACAA+TGG - Chr6:4893741-4893760 MsG0680030535.01.T01:intron 35.0%
CTTAACAGAATGAGAGAACT+AGG - Chr6:4892173-4892192 MsG0680030535.01.T01:intron 35.0%
CTTATACTGACATGAACTGA+AGG + Chr6:4888460-4888479 None:intergenic 35.0%
CTTATGATTCCCTTAGTTAG+GGG - Chr6:4890853-4890872 MsG0680030535.01.T01:intron 35.0%
CTTTATAAATGTTCCGTCTG+TGG - Chr6:4892121-4892140 MsG0680030535.01.T01:intron 35.0%
GAAATATCAATAGCGATTGG+GGG + Chr6:4892990-4893009 None:intergenic 35.0%
GAATACAATATACCGTCTCA+AGG + Chr6:4892255-4892274 None:intergenic 35.0%
GAATGGAATGAAAAAGGCTT+TGG + Chr6:4893230-4893249 None:intergenic 35.0%
GATAATACCGAGTAGGATTA+CGG + Chr6:4890510-4890529 None:intergenic 35.0%
GCAGGAATTACACTAATAAC+AGG + Chr6:4890242-4890261 None:intergenic 35.0%
GCATCCTAGTTGTTTATTCA+TGG - Chr6:4891228-4891247 MsG0680030535.01.T01:intron 35.0%
GTCTTATGATTCCCTTAGTT+AGG - Chr6:4890851-4890870 MsG0680030535.01.T01:intron 35.0%
GTGAATATTGTTATGCCAGA+AGG + Chr6:4892816-4892835 None:intergenic 35.0%
TAATCAGACTAGTGGTATAG+TGG + Chr6:4889821-4889840 None:intergenic 35.0%
TAATCCTACTCGGTATTATC+AGG - Chr6:4890510-4890529 MsG0680030535.01.T01:intron 35.0%
TAATGGGACATGAATCAAAC+AGG - Chr6:4893432-4893451 MsG0680030535.01.T01:CDS 35.0%
TACAAGAGGGTCTTACATAT+AGG - Chr6:4890946-4890965 MsG0680030535.01.T01:intron 35.0%
TAGACTACCCAAGTAGATTA+TGG - Chr6:4891490-4891509 MsG0680030535.01.T01:intron 35.0%
TATTAGCATACTGTGACACA+TGG + Chr6:4888923-4888942 None:intergenic 35.0%
TATTATCAGGATTCTTCTGC+TGG - Chr6:4890523-4890542 MsG0680030535.01.T01:intron 35.0%
TCTCATCATCAACAGTAATC+CGG + Chr6:4888430-4888449 None:intergenic 35.0%
TCTTCTTTCACTGTTTAGGT+TGG + Chr6:4891924-4891943 None:intergenic 35.0%
TGAATAAGTCCACAACATGT+TGG + Chr6:4889881-4889900 None:intergenic 35.0%
TGTCTATGGATCATTTATGG+TGG - Chr6:4890083-4890102 MsG0680030535.01.T01:CDS 35.0%
TGTTACTAGATGTTACTAGG+GGG + Chr6:4891571-4891590 None:intergenic 35.0%
TTCAGGAATTACTACAGCAA+TGG - Chr6:4888600-4888619 MsG0680030535.01.T01:three_prime_UTR 35.0%
TTCATTATTCAAACACCGAG+AGG - Chr6:4893252-4893271 MsG0680030535.01.T01:intron 35.0%
TTTAGATTCTGTAACCAGAC+TGG - Chr6:4889941-4889960 MsG0680030535.01.T01:intron 35.0%
! AATCTTTCATCGGCATTTTC+TGG + Chr6:4892945-4892964 None:intergenic 35.0%
! ATCTATGATTTTCAGACCAC+TGG + Chr6:4890356-4890375 None:intergenic 35.0%
! ATTTTACCAAGATATCCTGG+TGG + Chr6:4892203-4892222 None:intergenic 35.0%
! GGTCTTATGAATAAGAATGG+AGG + Chr6:4890737-4890756 None:intergenic 35.0%
! TAAATTACAGTCGTTCTGGA+TGG - Chr6:4889071-4889090 MsG0680030535.01.T01:CDS 35.0%
! TCAACACTCATTTTCCGTTT+TGG + Chr6:4892897-4892916 None:intergenic 35.0%
! TCACAAGAATTGCTAGTTTG+AGG + Chr6:4889909-4889928 None:intergenic 35.0%
! TGAAGCATATTTCTGTTGCA+AGG + Chr6:4891801-4891820 None:intergenic 35.0%
! TTCAGCTGACTCAAATAATG+TGG - Chr6:4889189-4889208 MsG0680030535.01.T01:CDS 35.0%
! TTTTACCAAGATATCCTGGT+GGG + Chr6:4892202-4892221 None:intergenic 35.0%
!! GACAACATTTTTCAGAGCTA+GGG + Chr6:4891348-4891367 None:intergenic 35.0%
!! GCTCTAAATGATTTTCTCTC+TGG - Chr6:4891640-4891659 MsG0680030535.01.T01:intron 35.0%
!! GGGTTGATAACATTGTTTGT+TGG - Chr6:4890684-4890703 MsG0680030535.01.T01:intron 35.0%
!! TTGTCACGCATATCTTGTTT+TGG - Chr6:4890166-4890185 MsG0680030535.01.T01:intron 35.0%
!!! ACGTTTTTTCCTGCTATATG+TGG - Chr6:4888804-4888823 MsG0680030535.01.T01:three_prime_UTR 35.0%
!!! TTTTTTCCTGCTATATGTGG+TGG - Chr6:4888807-4888826 MsG0680030535.01.T01:three_prime_UTR 35.0%
AAAGAACGAACAACCTGTGT+TGG + Chr6:4890309-4890328 None:intergenic 40.0%
AAGCTCTGTTATCAATGTGG+TGG - Chr6:4889397-4889416 MsG0680030535.01.T01:CDS 40.0%
ACTAAAGCAGGGAAGGATAT+AGG - Chr6:4889969-4889988 MsG0680030535.01.T01:intron 40.0%
AGACATGTTTAGCATGCCAT+TGG + Chr6:4888628-4888647 None:intergenic 40.0%
AGGGCGATATCAAATATCAG+TGG + Chr6:4891329-4891348 None:intergenic 40.0%
ATATGATCGCGGATATGCTT+TGG - Chr6:4889159-4889178 MsG0680030535.01.T01:CDS 40.0%
ATGAATAAGAATGGAGGCAG+TGG + Chr6:4890731-4890750 None:intergenic 40.0%
CAAGAGGATGGGGAAATTAT+CGG - Chr6:4892855-4892874 MsG0680030535.01.T01:intron 40.0%
CAATGCCACAAACCTTGTTA+GGG + Chr6:4888484-4888503 None:intergenic 40.0%
CAATTTAACGATAGGTGGTC+AGG - Chr6:4893377-4893396 MsG0680030535.01.T01:intron 40.0%
CTCATCATCAACAGTAATCC+GGG + Chr6:4888429-4888448 None:intergenic 40.0%
CTCCAATCTGCCATTGAATT+AGG + Chr6:4893173-4893192 None:intergenic 40.0%
CTCCTAATTCAATGGCAGAT+TGG - Chr6:4893168-4893187 MsG0680030535.01.T01:intron 40.0%
CTGCTGCTACGTACATATTT+GGG - Chr6:4890258-4890277 MsG0680030535.01.T01:intron 40.0%
GAAAAATGTTGTCCTTGGTC+TGG - Chr6:4891355-4891374 MsG0680030535.01.T01:intron 40.0%
GAATCCTGATAATACCGAGT+AGG + Chr6:4890517-4890536 None:intergenic 40.0%
GACATGTTTAGCATGCCATT+GGG + Chr6:4888627-4888646 None:intergenic 40.0%
GATTACGGGAAGAAGAATTC+TGG + Chr6:4890495-4890514 None:intergenic 40.0%
GCACTTAGAAAAAGACAGCA+TGG + Chr6:4888863-4888882 None:intergenic 40.0%
GGCACAGAATTACCATCTAT+CGG + Chr6:4889135-4889154 None:intergenic 40.0%
GTCAGTATAAGTCCCTAACA+AGG - Chr6:4888469-4888488 MsG0680030535.01.T01:three_prime_UTR 40.0%
GTGATGAATTGAGTCGATGT+CGG - Chr6:4891952-4891971 MsG0680030535.01.T01:intron 40.0%
GTGTGGTTATATTGTAGCTG+TGG - Chr6:4890002-4890021 MsG0680030535.01.T01:intron 40.0%
GTGTGTTTATTGTCTCCTCT+TGG - Chr6:4888974-4888993 MsG0680030535.01.T01:CDS 40.0%
GTTACTAGATGTTACTAGGG+GGG + Chr6:4891570-4891589 None:intergenic 40.0%
GTTTACCTTCACATCTGTCA+GGG - Chr6:4893607-4893626 MsG0680030535.01.T01:CDS 40.0%
TAAGTCCCTAACAAGGTTTG+TGG - Chr6:4888476-4888495 MsG0680030535.01.T01:three_prime_UTR 40.0%
TATGATCGCGGATATGCTTT+GGG - Chr6:4889160-4889179 MsG0680030535.01.T01:CDS 40.0%
TCAAGTGACAGGAACAGATT+TGG + Chr6:4891883-4891902 None:intergenic 40.0%
TCCATCTAACCAACATGTTG+TGG - Chr6:4889869-4889888 MsG0680030535.01.T01:intron 40.0%
TCTCTCATTCTGTTAAGCCA+CGG + Chr6:4892170-4892189 None:intergenic 40.0%
TCTGATCATGTTGATGTCCT+CGG + Chr6:4893052-4893071 None:intergenic 40.0%
TGAACCGCAATTGAAACATC+GGG + Chr6:4890386-4890405 None:intergenic 40.0%
TGACATGAACTGAAGGTTGA+TGG + Chr6:4888453-4888472 None:intergenic 40.0%
TGGTTATATTGTAGCTGTGG+TGG - Chr6:4890005-4890024 MsG0680030535.01.T01:intron 40.0%
TGTTGCAAGGTCAGATAAAG+AGG + Chr6:4891788-4891807 None:intergenic 40.0%
TGTTTACCTTCACATCTGTC+AGG - Chr6:4893606-4893625 MsG0680030535.01.T01:CDS 40.0%
TTGAGTGCTTTAGCCATTTC+TGG - Chr6:4893658-4893677 MsG0680030535.01.T01:CDS 40.0%
TTGGAATTCAGATGAGGATG+AGG - Chr6:4892782-4892801 MsG0680030535.01.T01:intron 40.0%
! ACTCAACTTGCTTAGAACTC+TGG + Chr6:4893644-4893663 None:intergenic 40.0%
! AGATACGGAAACTTTAGCTC+TGG - Chr6:4893308-4893327 MsG0680030535.01.T01:CDS 40.0%
! ATAGGCGACTTAAGCTTTGA+TGG - Chr6:4893074-4893093 MsG0680030535.01.T01:intron 40.0%
! CAACAGAGATCATCGAGTTT+TGG - Chr6:4893023-4893042 MsG0680030535.01.T01:intron 40.0%
! CAAGAATTGCTAGTTTGAGG+AGG + Chr6:4889906-4889925 None:intergenic 40.0%
! CCTTTGTTTGTCATTAGGGT+GGG - Chr6:4893703-4893722 MsG0680030535.01.T01:intron 40.0%
! TCAGATAAAGAGGCATACTG+TGG + Chr6:4891778-4891797 None:intergenic 40.0%
! TCCACAACATGTTGGTTAGA+TGG + Chr6:4889873-4889892 None:intergenic 40.0%
! TCCTTTGTTTGTCATTAGGG+TGG - Chr6:4893702-4893721 MsG0680030535.01.T01:intron 40.0%
! TTTCAACCTAGGTTTGGTAG+TGG - Chr6:4893137-4893156 MsG0680030535.01.T01:intron 40.0%
! TTTCAGGTGTTAAAAGAGCC+CGG - Chr6:4888408-4888427 MsG0680030535.01.T01:three_prime_UTR 40.0%
!! AAGAAGAATTCTGGTTCCGT+TGG + Chr6:4890486-4890505 None:intergenic 40.0%
!! ACAAAAGTGCCCCTAACTAA+GGG + Chr6:4890865-4890884 None:intergenic 40.0%
!! AGAAGAATTCTGGTTCCGTT+GGG + Chr6:4890485-4890504 None:intergenic 40.0%
!! ATGCTTTGAGAGAATGTCCA+AGG - Chr6:4890413-4890432 MsG0680030535.01.T01:intron 40.0%
!! GAAAAAACAGCTTAGCCTTG+TGG + Chr6:4892345-4892364 None:intergenic 40.0%
!! GCTCTGAAAAATGTTGTCCT+TGG - Chr6:4891350-4891369 MsG0680030535.01.T01:intron 40.0%
!! GGAATAGGAGCATTTATTCC+TGG + Chr6:4892924-4892943 None:intergenic 40.0%
!! GGACAACATTTTTCAGAGCT+AGG + Chr6:4891349-4891368 None:intergenic 40.0%
!!! TCATCGGCATTTTCTGGAAT+AGG + Chr6:4892939-4892958 None:intergenic 40.0%
AATGTTGTCCTTGGTCTGGT+AGG - Chr6:4891359-4891378 MsG0680030535.01.T01:intron 45.0%
ACATGACCACTACCAAACCT+AGG + Chr6:4893146-4893165 None:intergenic 45.0%
ACATGGCAGAACAAGAGGAT+GGG - Chr6:4892844-4892863 MsG0680030535.01.T01:intron 45.0%
AGTCGGAGGTGATGACTAAT+GGG - Chr6:4893416-4893435 MsG0680030535.01.T01:CDS 45.0%
CAACGGTGAAAAATGCCTCT+CGG + Chr6:4893270-4893289 None:intergenic 45.0%
CAATGGCAGATTGGAGTAGT+GGG - Chr6:4893177-4893196 MsG0680030535.01.T01:intron 45.0%
CATATCCGCGATCATATAGC+AGG + Chr6:4889156-4889175 None:intergenic 45.0%
CCAAATATGTACGTAGCAGC+AGG + Chr6:4890260-4890279 None:intergenic 45.0%
CCCACCCTAATGACAAACAA+AGG + Chr6:4893706-4893725 None:intergenic 45.0%
CCTGCTGCTACGTACATATT+TGG - Chr6:4890257-4890276 MsG0680030535.01.T01:intron 45.0%
CCTTCCCGATGTTTCAATTG+CGG - Chr6:4890379-4890398 MsG0680030535.01.T01:intron 45.0%
CTTCTTCCCGTAATCCTACT+CGG - Chr6:4890500-4890519 MsG0680030535.01.T01:intron 45.0%
GAATTCAGATGAGGATGAGG+AGG - Chr6:4892785-4892804 MsG0680030535.01.T01:intron 45.0%
GAGGGTCTTACATATAGGGA+CGG - Chr6:4890951-4890970 MsG0680030535.01.T01:intron 45.0%
GCAATGCCACAAACCTTGTT+AGG + Chr6:4888485-4888504 None:intergenic 45.0%
TAAGGACATGGCAGAACAAG+AGG - Chr6:4892839-4892858 MsG0680030535.01.T01:intron 45.0%
TACTACAGCAATGGTCCCAA+TGG - Chr6:4888609-4888628 MsG0680030535.01.T01:three_prime_UTR 45.0%
TAGTCGGAGGTGATGACTAA+TGG - Chr6:4893415-4893434 MsG0680030535.01.T01:CDS 45.0%
TATCCTTCCCTGCTTTAGTC+TGG + Chr6:4889968-4889987 None:intergenic 45.0%
TCAATGGCAGATTGGAGTAG+TGG - Chr6:4893176-4893195 MsG0680030535.01.T01:intron 45.0%
TCATGTCCACCACATATAGC+AGG + Chr6:4888816-4888835 None:intergenic 45.0%
TGTTTGCTTGCTTCCAACAC+AGG - Chr6:4890293-4890312 MsG0680030535.01.T01:intron 45.0%
TTGACAGCAACGTTATCACG+AGG + Chr6:4890439-4890458 None:intergenic 45.0%
! CCTGCTCTGCTCCAATTTTT+GGG + Chr6:4889432-4889451 None:intergenic 45.0%
! TAAGCTTTGATGGTCCTCCA+GGG - Chr6:4893084-4893103 MsG0680030535.01.T01:intron 45.0%
! TCCTGCTCTGCTCCAATTTT+TGG + Chr6:4889433-4889452 None:intergenic 45.0%
! TCTTCTGCTGGAAAGTATGC+TGG - Chr6:4890535-4890554 MsG0680030535.01.T01:intron 45.0%
! TTAAGCTTTGATGGTCCTCC+AGG - Chr6:4893083-4893102 MsG0680030535.01.T01:intron 45.0%
!! CACAAAAGTGCCCCTAACTA+AGG + Chr6:4890866-4890885 None:intergenic 45.0%
!! CTGGAAAGTATGCTGGTTTG+AGG - Chr6:4890542-4890561 MsG0680030535.01.T01:intron 45.0%
!! TACGGAAACTTTAGCTCTGG+AGG - Chr6:4893311-4893330 MsG0680030535.01.T01:intron 45.0%
!!! CTCTGCTCCAATTTTTGGGT+TGG + Chr6:4889428-4889447 None:intergenic 45.0%
!!! GAGAGGCATTTTTCACCGTT+GGG - Chr6:4893269-4893288 MsG0680030535.01.T01:intron 45.0%
AAATTGGAGCAGAGCAGGAG+CGG - Chr6:4889434-4889453 MsG0680030535.01.T01:CDS 50.0%
AGACTGGACCAGACTAAAGC+AGG - Chr6:4889957-4889976 MsG0680030535.01.T01:intron 50.0%
AGAGAACTAGGATACCCACC+AGG - Chr6:4892185-4892204 MsG0680030535.01.T01:intron 50.0%
AGCTCCTGCATAACCACAGA+CGG + Chr6:4892137-4892156 None:intergenic 50.0%
AGTTCAGATCAGCGCTCGTA+GGG - Chr6:4893465-4893484 MsG0680030535.01.T01:CDS 50.0%
ATTCTGTTAAGCCACGGAGG+TGG + Chr6:4892164-4892183 None:intergenic 50.0%
CATATAGGGACGGAGGTAGT+AGG - Chr6:4890961-4890980 MsG0680030535.01.T01:intron 50.0%
CATGGCAGAACAAGAGGATG+GGG - Chr6:4892845-4892864 MsG0680030535.01.T01:intron 50.0%
CATGTCCCTGACAGATGTGA+AGG + Chr6:4893615-4893634 None:intergenic 50.0%
CCAGATTCCAACACCTCACT+AGG + Chr6:4888777-4888796 None:intergenic 50.0%
CCCAAAAATTGGAGCAGAGC+AGG - Chr6:4889429-4889448 MsG0680030535.01.T01:CDS 50.0%
CCGCAATTGAAACATCGGGA+AGG + Chr6:4890382-4890401 None:intergenic 50.0%
CGAGATTCTGGCAGCAGATA+CGG - Chr6:4893293-4893312 MsG0680030535.01.T01:CDS 50.0%
CGCTGATCTGAACTCACACA+TGG + Chr6:4893459-4893478 None:intergenic 50.0%
CGGAGGTAGTAGGTGACAAT+AGG - Chr6:4890971-4890990 MsG0680030535.01.T01:intron 50.0%
CTCATTCTGTTAAGCCACGG+AGG + Chr6:4892167-4892186 None:intergenic 50.0%
CTGTGCCTGCTATATGATCG+CGG - Chr6:4889148-4889167 MsG0680030535.01.T01:CDS 50.0%
CTTCACATCTGTCAGGGACA+TGG - Chr6:4893613-4893632 MsG0680030535.01.T01:CDS 50.0%
GACAGCATGGATACTCACCA+CGG + Chr6:4888850-4888869 None:intergenic 50.0%
GACATGGCAGAACAAGAGGA+TGG - Chr6:4892843-4892862 MsG0680030535.01.T01:intron 50.0%
GACTGGACCAGACTAAAGCA+GGG - Chr6:4889958-4889977 MsG0680030535.01.T01:intron 50.0%
GAGACCGTCACCATCATAGT+CGG - Chr6:4893399-4893418 MsG0680030535.01.T01:intron 50.0%
GATGCAACTCGTCAGCTCTT+GGG - Chr6:4890580-4890599 MsG0680030535.01.T01:intron 50.0%
GATTTGGCAGACGATGCAAG+TGG + Chr6:4891867-4891886 None:intergenic 50.0%
GCAGCAAACTCAAGTCCCAA+CGG - Chr6:4890467-4890486 MsG0680030535.01.T01:intron 50.0%
GGATACCCACCAGGATATCT+TGG - Chr6:4892194-4892213 MsG0680030535.01.T01:intron 50.0%
GGCAGCCCACAATCTTTCAT+CGG + Chr6:4892955-4892974 None:intergenic 50.0%
GGGGACACTTCTTCATGCAT+AGG + Chr6:4893209-4893228 None:intergenic 50.0%
GGTCTTACATATAGGGACGG+AGG - Chr6:4890954-4890973 MsG0680030535.01.T01:intron 50.0%
GTCATCACCTCCGACTATGA+TGG + Chr6:4893412-4893431 None:intergenic 50.0%
GTGTGTGTGTGTGTGTCCTT+TGG - Chr6:4892719-4892738 MsG0680030535.01.T01:intron 50.0%
TCAGGATCCTAGTGAGGTGT+TGG - Chr6:4888767-4888786 MsG0680030535.01.T01:three_prime_UTR 50.0%
TGATGCAACTCGTCAGCTCT+TGG - Chr6:4890579-4890598 MsG0680030535.01.T01:intron 50.0%
TGCTTTAGTCTGGTCCAGTC+TGG + Chr6:4889958-4889977 None:intergenic 50.0%
TGTTCCGTCTGTGGTTATGC+AGG - Chr6:4892130-4892149 MsG0680030535.01.T01:intron 50.0%
TTCTGCTCAGGATCCTAGTG+AGG - Chr6:4888761-4888780 MsG0680030535.01.T01:three_prime_UTR 50.0%
TTCTGTTAAGCCACGGAGGT+GGG + Chr6:4892163-4892182 None:intergenic 50.0%
! AAGCTTTGATGGTCCTCCAG+GGG - Chr6:4893085-4893104 MsG0680030535.01.T01:intron 50.0%
! ACCTCCGACTATGATGGTGA+CGG + Chr6:4893406-4893425 None:intergenic 50.0%
! ATGAAAGATTGTGGGCTGCC+AGG - Chr6:4892955-4892974 MsG0680030535.01.T01:intron 50.0%
! CTGTTATCAATGTGGTGGCG+TGG - Chr6:4889402-4889421 MsG0680030535.01.T01:CDS 50.0%
! TGAAAGATTGTGGGCTGCCA+GGG - Chr6:4892956-4892975 MsG0680030535.01.T01:intron 50.0%
!! AAGTATGCTGGTTTGAGGCC+AGG - Chr6:4890547-4890566 MsG0680030535.01.T01:intron 50.0%
!! CCTAGTGAGGTGTTGGAATC+TGG - Chr6:4888774-4888793 MsG0680030535.01.T01:three_prime_UTR 50.0%
!! GTTGCATCATCAAGAGCACC+TGG + Chr6:4890568-4890587 None:intergenic 50.0%
!! TCATCGAGTTTTGGTAGCCG+AGG - Chr6:4893032-4893051 MsG0680030535.01.T01:intron 50.0%
!! TGAGGTGTTGGAATCTGGTG+AGG - Chr6:4888779-4888798 MsG0680030535.01.T01:three_prime_UTR 50.0%
!!! CGAGAGGCATTTTTCACCGT+TGG - Chr6:4893268-4893287 MsG0680030535.01.T01:intron 50.0%
AACTCGTCAGCTCTTGGGCT+TGG - Chr6:4890585-4890604 MsG0680030535.01.T01:intron 55.0%
AATTGGAGCAGAGCAGGAGC+GGG - Chr6:4889435-4889454 MsG0680030535.01.T01:CDS 55.0%
ACCGTCACCATCATAGTCGG+AGG - Chr6:4893402-4893421 MsG0680030535.01.T01:intron 55.0%
ACTAGGCTCCTACCAGACCA+AGG + Chr6:4891370-4891389 None:intergenic 55.0%
ACTCGTCAGCTCTTGGGCTT+GGG - Chr6:4890586-4890605 MsG0680030535.01.T01:intron 55.0%
CTGCCAGAATCTCGTCCCAA+CGG + Chr6:4893287-4893306 None:intergenic 55.0%
GAGTTCAGATCAGCGCTCGT+AGG - Chr6:4893464-4893483 MsG0680030535.01.T01:CDS 55.0%
GATGAGGAGGATCAGCCTTC+TGG - Chr6:4892798-4892817 MsG0680030535.01.T01:intron 55.0%
GCAACGTTATCACGAGGCCT+TGG + Chr6:4890433-4890452 None:intergenic 55.0%
GCACATGCTAGAGTCTGAGC+AGG + Chr6:4889356-4889375 None:intergenic 55.0%
GGACCAGACTAAAGCAGGGA+AGG - Chr6:4889962-4889981 MsG0680030535.01.T01:intron 55.0%
GGCGTGGCCAACCCAAAAAT+TGG - Chr6:4889418-4889437 MsG0680030535.01.T01:CDS 55.0%
TCACCGTTGGGACGAGATTC+TGG - Chr6:4893281-4893300 MsG0680030535.01.T01:intron 55.0%
AGCAGGAGCGGGCGCTATTT+AGG - Chr6:4889446-4889465 MsG0680030535.01.T01:CDS 60.0%
CTCGTCAGCTCTTGGGCTTG+GGG - Chr6:4890587-4890606 MsG0680030535.01.T01:intron 60.0%
GAATTGTGTCCTGGGTCCCC+TGG + Chr6:4893104-4893123 None:intergenic 60.0%
GCAGGAGCGGGCGCTATTTA+GGG - Chr6:4889447-4889466 MsG0680030535.01.T01:CDS 60.0%
GCGGGCGCTATTTAGGGATG+CGG - Chr6:4889453-4889472 MsG0680030535.01.T01:intron 60.0%
TCGTCAGCTCTTGGGCTTGG+GGG - Chr6:4890588-4890607 MsG0680030535.01.T01:intron 60.0%
!! GATTGGGGGTACTACAGCCC+TGG + Chr6:4892976-4892995 None:intergenic 60.0%
AGGAGCTTGACCCACCTCCG+TGG - Chr6:4892150-4892169 MsG0680030535.01.T01:intron 65.0%
TTGTGTCCTGGGTCCCCTGG+AGG + Chr6:4893101-4893120 None:intergenic 65.0%
GATGGTCCTCCAGGGGACCC+AGG - Chr6:4893092-4893111 MsG0680030535.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 4888395 4893867 4888395 ID=MsG0680030535.01;Name=MsG0680030535.01
Chr6 mRNA 4888395 4893867 4888395 ID=MsG0680030535.01.T01;Parent=MsG0680030535.01;Name=MsG0680030535.01.T01;_AED=0.50;_eAED=0.51;_QI=0|0.57|0.75|1|0.57|0.62|8|408|407
Chr6 exon 4888575 4889469 4888575 ID=MsG0680030535.01.T01:exon:12171;Parent=MsG0680030535.01.T01
Chr6 exon 4888395 4888542 4888395 ID=MsG0680030535.01.T01:exon:12172;Parent=MsG0680030535.01.T01
Chr6 CDS 4893794 4893867 4893794 ID=MsG0680030535.01.T01:cds;Parent=MsG0680030535.01.T01
Chr6 CDS 4893604 4893679 4893604 ID=MsG0680030535.01.T01:cds;Parent=MsG0680030535.01.T01
Chr6 CDS 4893411 4893491 4893411 ID=MsG0680030535.01.T01:cds;Parent=MsG0680030535.01.T01
Chr6 CDS 4893289 4893329 4893289 ID=MsG0680030535.01.T01:cds;Parent=MsG0680030535.01.T01
Chr6 CDS 4891653 4891905 4891653 ID=MsG0680030535.01.T01:cds;Parent=MsG0680030535.01.T01
Chr6 CDS 4890047 4890110 4890047 ID=MsG0680030535.01.T01:cds;Parent=MsG0680030535.01.T01
Chr6 CDS 4888835 4889469 4888835 ID=MsG0680030535.01.T01:cds;Parent=MsG0680030535.01.T01
Chr6 three_prime_UTR 4888575 4888834 4888575 ID=MsG0680030535.01.T01:three_prime_utr;Parent=MsG0680030535.01.T01
Chr6 three_prime_UTR 4888395 4888542 4888395 ID=MsG0680030535.01.T01:three_prime_utr;Parent=MsG0680030535.01.T01
Chr6 mRNA 4888397 4893867 4888397 ID=MsG0680030535.01.T02;Parent=MsG0680030535.01;Name=MsG0680030535.01.T02;_AED=0.50;_eAED=0.51;_QI=0|0.5|0.71|1|0.66|0.85|7|438|407
Chr6 exon 4888397 4889469 4888397 ID=MsG0680030535.01.T02:exon:12173;Parent=MsG0680030535.01.T02
Chr6 CDS 4893794 4893867 4893794 ID=MsG0680030535.01.T02:cds;Parent=MsG0680030535.01.T02
Chr6 CDS 4893604 4893679 4893604 ID=MsG0680030535.01.T02:cds;Parent=MsG0680030535.01.T02
Chr6 CDS 4893411 4893491 4893411 ID=MsG0680030535.01.T02:cds;Parent=MsG0680030535.01.T02
Chr6 CDS 4893289 4893329 4893289 ID=MsG0680030535.01.T02:cds;Parent=MsG0680030535.01.T02
Chr6 CDS 4891653 4891905 4891653 ID=MsG0680030535.01.T02:cds;Parent=MsG0680030535.01.T02
Chr6 CDS 4890047 4890110 4890047 ID=MsG0680030535.01.T02:cds;Parent=MsG0680030535.01.T02
Chr6 CDS 4888835 4889469 4888835 ID=MsG0680030535.01.T02:cds;Parent=MsG0680030535.01.T02
Chr6 three_prime_UTR 4888397 4888834 4888397 ID=MsG0680030535.01.T02:three_prime_utr;Parent=MsG0680030535.01.T02
Gene Sequence

>MsG0680030535.01.T01

ATGAATTTAGCTATTTCAGGTGTTAAAAGAGCCCGGATTACTGTTGATGATGAGACCATCAACCTTCAGTTCATAGCTAGTAAAAATAAGCTTCAGGAATTACTACAGCAATGGTCCCAATGGCATGCTAAACATGTCTCCTCATCAAATGATCCTAGTGAGGTGTTGGAATCTGGTGAGGAGACGTTTTTTCCTGCTATATGTGGTGGACATGAATCAAAATCTTCCGTGTATGCTAATAATCATTACAAGGATAATGAACATGATATTTGTGGTCTGAAAATCATAGATGCACCTTCCCGATGTTTCAATTGCGGTTCATACAGTCATGCTTTGAGAGAATGTCCAAGGCCTCGTGATAACGTTGCTGTCAATAATGCTCGCAGCAAACTCAAGTCCCAACGGAACCAGAATTCTTCTTCCCGTAATCCTACTCGGTATTATCAGGATTCTTCTGCTGGAAAGTATGCTGGTTTGAGGCCAGGTGCTCTTGATGATGCAACTCGTCAGCTCTTGGGCTTGGGGGAGCTTGACCCACCTCCGTGGCTTAACAGAATGAGAGAACTAGGATACCCACCAGGATATCTTGATGAGGATGAGGAGGATCAGCCTTCTGGCATAACAATATTCACTGATAAGGACATGGCAGAACAAGAGGATGGGGAAATTATCGGAGCAGATTCTTCAAAGCCAAAACGGAAAATGAGTGTTGAATTTCCAGGAATAAATGCTCCTATTCCAGAAAATGCCGATGAAAGATTGTGGGCTGCCAGGGCTGTAGTACCCCCAATCGCTATTGATATTTCAAGGAACTGGTCACAACAGAGATCATCGAGTTTTGGTAGCCGAGGACATCAACATGATCAGAGAATAGGCGACTTAAGCTTTGATGGTCCTCCAGGGGACCCAGGACACAATTCATCACATTTTAGTTTTCAACCTAGGTTTGGTAGTGGTCATGTTTCTCCTAATTCAATGGCAGATTGGAGTAGTGGGAGAAGTCCTATGCATGAAGAAGTGTCCCCAAAGCCTTTTTCATTCCATTCTCTTCATTATTCAAACACCGAGAGGCATTTTTCACCGTTGGGACGAGATTCTGGCAGCAGATACGGAAACTTTAGCTCTGGAGGCATGTATGATAGAGACAGAGATAGAGACCGAGATCTTTCATCTCAATTTAACGATAGGTGGTCAGGAGACCGTCACCATCATAGTCGGAGGTGA

>MsG0680030535.01.T02

ATGAATTTAGCTATTTCAGGTGTTAAAAGAGCCCGGATTACTGTTGATGATGAGACCATCAACCTTCAGTTCATAGCTAGTAAAAATAAGCTTCAGGAATTACTACAGCAATGGTCCCAATGGCATGCTAAACATGTCTCCTCATCAAATGATCCTAGTGAGGTGTTGGAATCTGGTGAGGAGACGTTTTTTCCTGCTATATGTGGTGGACATGAATCAAAATCTTCCGTGTATGCTAATAATCATTACAAGGATAATGAACATGATATTTGTGGTCTGAAAATCATAGATGCACCTTCCCGATGTTTCAATTGCGGTTCATACAGTCATGCTTTGAGAGAATGTCCAAGGCCTCGTGATAACGTTGCTGTCAATAATGCTCGCAGCAAACTCAAGTCCCAACGGAACCAGAATTCTTCTTCCCGTAATCCTACTCGGTATTATCAGGATTCTTCTGCTGGAAAGTATGCTGGTTTGAGGCCAGGTGCTCTTGATGATGCAACTCGTCAGCTCTTGGGCTTGGGGGAGCTTGACCCACCTCCGTGGCTTAACAGAATGAGAGAACTAGGATACCCACCAGGATATCTTGATGAGGATGAGGAGGATCAGCCTTCTGGCATAACAATATTCACTGATAAGGACATGGCAGAACAAGAGGATGGGGAAATTATCGGAGCAGATTCTTCAAAGCCAAAACGGAAAATGAGTGTTGAATTTCCAGGAATAAATGCTCCTATTCCAGAAAATGCCGATGAAAGATTGTGGGCTGCCAGGGCTGTAGTACCCCCAATCGCTATTGATATTTCAAGGAACTGGTCACAACAGAGATCATCGAGTTTTGGTAGCCGAGGACATCAACATGATCAGAGAATAGGCGACTTAAGCTTTGATGGTCCTCCAGGGGACCCAGGACACAATTCATCACATTTTAGTTTTCAACCTAGGTTTGGTAGTGGTCATGTTTCTCCTAATTCAATGGCAGATTGGAGTAGTGGGAGAAGTCCTATGCATGAAGAAGTGTCCCCAAAGCCTTTTTCATTCCATTCTCTTCATTATTCAAACACCGAGAGGCATTTTTCACCGTTGGGACGAGATTCTGGCAGCAGATACGGAAACTTTAGCTCTGGAGGCATGTATGATAGAGACAGAGATAGAGACCGAGATCTTTCATCTCAATTTAACGATAGGTGGTCAGGAGACCGTCACCATCATAGTCGGAGGTGA
Protein sequence

>MsG0680030535.01.T01

MNLAISGVKRARITVDDETINLQFIASKNKLQELLQQWSQWHAKHVSSSNDPSEVLESGEETFFPAICGGHESKSSVYANNHYKDNEHDICGLKIIDAPSRCFNCGSYSHALRECPRPRDNVAVNNARSKLKSQRNQNSSSRNPTRYYQDSSAGKYAGLRPGALDDATRQLLGLGELDPPPWLNRMRELGYPPGYLDEDEEDQPSGITIFTDKDMAEQEDGEIIGADSSKPKRKMSVEFPGINAPIPENADERLWAARAVVPPIAIDISRNWSQQRSSSFGSRGHQHDQRIGDLSFDGPPGDPGHNSSHFSFQPRFGSGHVSPNSMADWSSGRSPMHEEVSPKPFSFHSLHYSNTERHFSPLGRDSGSRYGNFSSGGMYDRDRDRDRDLSSQFNDRWSGDRHHHSRR*

>MsG0680030535.01.T02

MNLAISGVKRARITVDDETINLQFIASKNKLQELLQQWSQWHAKHVSSSNDPSEVLESGEETFFPAICGGHESKSSVYANNHYKDNEHDICGLKIIDAPSRCFNCGSYSHALRECPRPRDNVAVNNARSKLKSQRNQNSSSRNPTRYYQDSSAGKYAGLRPGALDDATRQLLGLGELDPPPWLNRMRELGYPPGYLDEDEEDQPSGITIFTDKDMAEQEDGEIIGADSSKPKRKMSVEFPGINAPIPENADERLWAARAVVPPIAIDISRNWSQQRSSSFGSRGHQHDQRIGDLSFDGPPGDPGHNSSHFSFQPRFGSGHVSPNSMADWSSGRSPMHEEVSPKPFSFHSLHYSNTERHFSPLGRDSGSRYGNFSSGGMYDRDRDRDRDLSSQFNDRWSGDRHHHSRR*