AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030993.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030993.01.T01 MTR_6g015785 93.028 502 27 1 1 502 1 494 0.0 890
MsG0680030993.01.T01 MTR_2g035760 69.565 506 137 4 5 502 1 497 0.0 666
MsG0680030993.01.T01 MTR_4g094732 46.742 445 208 7 75 498 44 480 1.22e-133 395
MsG0680030993.01.T01 MTR_2g035790 52.153 418 177 7 100 498 75 488 6.69e-131 389
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030993.01.T01 AT4G20050 59.307 462 169 5 41 500 62 506 0.0 539
MsG0680030993.01.T01 AT4G20050 59.307 462 169 5 41 500 37 481 0.0 538
MsG0680030993.01.T01 AT4G20050 59.307 462 169 5 41 500 37 481 0.0 538
MsG0680030993.01.T01 AT4G20050 59.307 462 169 5 41 500 37 481 0.0 538
MsG0680030993.01.T01 AT4G20050 59.307 462 169 5 41 500 37 481 0.0 538
MsG0680030993.01.T01 AT4G20050 64.062 384 135 3 119 500 1 383 1.79e-176 501
MsG0680030993.01.T01 AT4G20050 64.062 384 135 3 119 500 1 383 1.79e-176 501
MsG0680030993.01.T01 AT4G20040 49.268 410 184 4 101 492 74 477 2.06e-130 387

Find 88 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAATTGATTTGTCAAATTT+TGG 0.107009 6:-12631594 MsG0680030993.01.T01:CDS
ATAAAGTTAAGTTACCTTTA+AGG 0.156948 6:-12632670 MsG0680030993.01.T01:CDS
ACTTGTTCAATTTGTTTAAA+AGG 0.165481 6:+12630382 None:intergenic
AATATTGAACATTTCTAATA+AGG 0.212684 6:+12630239 None:intergenic
TTACCTTTAAGGACTATTTC+TGG 0.223377 6:-12632659 MsG0680030993.01.T01:CDS
GGTCAAGCTAACACAATTTC+TGG 0.230277 6:-12631243 MsG0680030993.01.T01:CDS
CCACCAGAAATAGTCCTTAA+AGG 0.277659 6:+12632656 None:intergenic
TATAATAAAGCTAGTGGATT+TGG 0.290862 6:-12631210 MsG0680030993.01.T01:CDS
TGTTTCTAATGTATGTTTCA+TGG 0.307682 6:+12631406 None:intergenic
CATCAGCTATGGCTGCTAGA+AGG 0.309040 6:+12632293 None:intergenic
TGTGAATGGAATGAATTTAA+AGG 0.312008 6:-12630341 MsG0680030993.01.T01:CDS
GGTACTCATGTGATTTCTTC+AGG 0.340891 6:+12632368 None:intergenic
TCAATCAAAGGCATAGTTAA+TGG 0.354427 6:-12630481 MsG0680030993.01.T01:CDS
TACATTAGAAACACTTTCAT+TGG 0.355444 6:-12631396 MsG0680030993.01.T01:CDS
GATATTGGAATTATGATTAC+TGG 0.361842 6:-12631264 MsG0680030993.01.T01:CDS
ATCACACATTTCACCACAAA+TGG 0.371474 6:-12631447 MsG0680030993.01.T01:CDS
ATGATATCTATGCATGGAAA+TGG 0.386160 6:-12630307 MsG0680030993.01.T01:CDS
TGAACATTTCTAATAAGGTT+AGG 0.388575 6:+12630244 None:intergenic
GGCATTGGAATTAGTCTTCA+AGG 0.408711 6:-12631327 MsG0680030993.01.T01:CDS
ATTGTTGACAACATGTTCTC+TGG 0.409396 6:-12630451 MsG0680030993.01.T01:CDS
GGAATCATGTTTGGTTAAAG+AGG 0.421087 6:+12632592 None:intergenic
CTTGAGATGTGAAGTTGAAC+AGG 0.422590 6:+12630541 None:intergenic
TTGGACTAAAATTCCATTTG+TGG 0.424626 6:+12631434 None:intergenic
ACATTTCTAAGAGCATGATT+AGG 0.437297 6:+12630190 None:intergenic
GTGCTATCTGAATTTCCTGT+TGG 0.441062 6:+12632322 None:intergenic
ATCTCAAGTAGTTTCTTCCT+TGG 0.448224 6:-12630526 MsG0680030993.01.T01:CDS
CTGCAAAAGGTCCAAGTAAA+GGG 0.456444 6:-12632270 MsG0680030993.01.T01:CDS
GAGTACCTTGTAACATCATA+TGG 0.457799 6:-12632352 MsG0680030993.01.T01:CDS
GTTGCTAGAAATGTTGTGAA+TGG 0.465544 6:-12630355 MsG0680030993.01.T01:CDS
GCTAGTGGATTTGGTGGTAC+AGG 0.467619 6:-12631201 MsG0680030993.01.T01:CDS
CTCATAATTGTAAGAGGGTG+AGG 0.477111 6:+12631566 None:intergenic
CTAGACTCAAACTTCAAAGC+TGG 0.478519 6:-12631519 MsG0680030993.01.T01:CDS
TGAAGCAATGGAATCATGTT+TGG 0.485230 6:+12632583 None:intergenic
TGTATGTTTCATGGCCACTT+TGG 0.488393 6:+12631415 None:intergenic
TGCATGGAAATGGAACTTCA+TGG 0.488929 6:-12630297 MsG0680030993.01.T01:CDS
ATCAGCTATGGCTGCTAGAA+GGG 0.489348 6:+12632294 None:intergenic
GGAGAGGGTGAGAATGAAGA+TGG 0.500390 6:+12632557 None:intergenic
GCTGCAAAAGGTCCAAGTAA+AGG 0.500398 6:-12632271 MsG0680030993.01.T01:CDS
TCATATGGTGCTGATCCAAC+AGG 0.501553 6:-12632337 MsG0680030993.01.T01:CDS
AATAAAGCTAGTGGATTTGG+TGG 0.502846 6:-12631207 MsG0680030993.01.T01:CDS
AAGGATTGTAAATTCTTACA+TGG 0.506307 6:-12630590 MsG0680030993.01.T01:CDS
GCCATAGCTGATGCTGCAAA+AGG 0.511601 6:-12632283 MsG0680030993.01.T01:CDS
TGGACTTATTCTTGCCATTG+TGG 0.512010 6:+12632742 None:intergenic
CAGCACCATATGATGTTACA+AGG 0.515483 6:+12632347 None:intergenic
ATGAATGGCATAATTGACCT+TGG 0.516824 6:-12632241 MsG0680030993.01.T01:CDS
ATGTTCTCTGGATCAAATCA+TGG 0.519341 6:-12630439 MsG0680030993.01.T01:CDS
GGTGCTCAGATTAATCTTCA+AGG 0.521779 6:-12632217 MsG0680030993.01.T01:CDS
GTTTGATGGAAAATTGTTTG+AGG 0.524184 6:+12631623 None:intergenic
CCCTTCTCCTATGTCATCAC+AGG 0.533535 6:-12632507 MsG0680030993.01.T01:intron
CAATATTCTTTAAGTGCTAG+TGG 0.539169 6:-12630223 MsG0680030993.01.T01:CDS
ACCTGTGATGACATAGGAGA+AGG 0.542191 6:+12632506 None:intergenic
CATTGTTATAATAAAGCTAG+TGG 0.546363 6:-12631216 MsG0680030993.01.T01:CDS
CTAGGAGATGACATAGGAGA+AGG 0.548634 6:+12632530 None:intergenic
ATTTGATGTTAACAGATACA+TGG 0.552529 6:-12631660 MsG0680030993.01.T01:intron
AGATTTCCAACACCAGCCAC+TGG 0.556766 6:+12632160 None:intergenic
TGAAGATGGTGGTGAAGCAA+TGG 0.559158 6:+12632571 None:intergenic
ATTGGTCAACACATAACTGC+AGG 0.563405 6:-12631378 MsG0680030993.01.T01:CDS
TATGTACTCATAATTGTAAG+AGG 0.568602 6:+12631560 None:intergenic
GGAATTTATTTGAAACTACC+AGG 0.569379 6:-12631180 MsG0680030993.01.T01:intron
GCATTGGAATTAGTCTTCAA+GGG 0.572263 6:-12631326 MsG0680030993.01.T01:CDS
ATAGGAGAAGGGCTAGGAGA+GGG 0.577444 6:+12632542 None:intergenic
CCTTTAAGGACTATTTCTGG+TGG 0.580999 6:-12632656 MsG0680030993.01.T01:CDS
CCTGTGATGACATAGGAGAA+GGG 0.593155 6:+12632507 None:intergenic
ACAATTACCTGTGATGACAT+AGG 0.596000 6:+12632500 None:intergenic
ATTGTTCTAAAATCAATCAA+AGG 0.598802 6:-12630493 MsG0680030993.01.T01:CDS
GATGACATAGGAGAAGGGCT+AGG 0.601891 6:+12632536 None:intergenic
GATGACATAGGAGAAGGGCT+AGG 0.603718 6:+12632512 None:intergenic
GGCTGGTGTTGGAAATCTCA+TGG 0.612809 6:-12632155 MsG0680030993.01.T01:intron
GACTCAAACTTCAAAGCTGG+AGG 0.617626 6:-12631516 MsG0680030993.01.T01:CDS
GATTAATCTGAGCACCTCCA+AGG 0.619416 6:+12632224 None:intergenic
TAGGAGATGACATAGGAGAA+GGG 0.631480 6:+12632531 None:intergenic
CCAGCCACTGGAAAATGCAA+AGG 0.639007 6:+12632172 None:intergenic
TCAGCAATGATATCTATGCA+TGG 0.639349 6:-12630313 MsG0680030993.01.T01:CDS
ATGTACTCATAATTGTAAGA+GGG 0.639355 6:+12631561 None:intergenic
CATAGGAGAAGGGCTAGGAG+AGG 0.643169 6:+12632541 None:intergenic
GAACAATCTTTGCATCACCA+AGG 0.646233 6:+12630509 None:intergenic
GAAGGGCTAGGAGATGACAT+AGG 0.651600 6:+12632524 None:intergenic
GAGGGTGAGAATGAAGATGG+TGG 0.653693 6:+12632560 None:intergenic
ATCAGAAGCATGAACCACAA+TGG 0.653695 6:+12632722 None:intergenic
TTATGAGTACATAACACTCA+AGG 0.657718 6:-12631550 MsG0680030993.01.T01:CDS
ATATAGGTTTAACACAAACA+AGG 0.659374 6:-12630609 MsG0680030993.01.T01:intron
TGGCAAGAATAAGTCCATTG+TGG 0.661515 6:-12632736 MsG0680030993.01.T01:CDS
GCATGAGTTACAAAGAAACA+AGG 0.666734 6:+12632695 None:intergenic
TAACCAAATGAAAACCACAA+TGG 0.680674 6:-12632756 None:intergenic
GGTCAACACATAACTGCAGG+AGG 0.681897 6:-12631375 MsG0680030993.01.T01:CDS
AATGGCATAATTGACCTTGG+AGG 0.687495 6:-12632238 MsG0680030993.01.T01:CDS
GCTCAGATTAATCTTCAAGG+TGG 0.688568 6:-12632214 MsG0680030993.01.T01:CDS
TGATGTTAACAGATACATGG+AGG 0.722635 6:-12631657 MsG0680030993.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATGTAAATAATTAACTTT+AGG + Chr6:12632182-12632201 None:intergenic 10.0%
!! TAATTAAAAAAAAAATTACC+TGG + Chr6:12631695-12631714 None:intergenic 10.0%
!!! ATAATTTTTGTTCAATATAT+AGG - Chr6:12632229-12632248 MsG0680030993.01.T01:CDS 10.0%
!! AATATTGAACATTTCTAATA+AGG + Chr6:12632618-12632637 None:intergenic 15.0%
!! GTATATCTATTAAAAAAGTT+GGG + Chr6:12631925-12631944 None:intergenic 15.0%
!! TATATCTATTAAAAAAGTTG+GGG + Chr6:12631924-12631943 None:intergenic 15.0%
!! TGTATATCTATTAAAAAAGT+TGG + Chr6:12631926-12631945 None:intergenic 15.0%
!!! AAAAATGAAAGAAAATTTTC+AGG - Chr6:12631506-12631525 MsG0680030993.01.T01:CDS 15.0%
!!! AAATTTGATCATTTTCAATT+TGG + Chr6:12632022-12632041 None:intergenic 15.0%
!!! ATACAATTTTTTGTTGTTTT+TGG - Chr6:12631941-12631960 MsG0680030993.01.T01:intron 15.0%
!! AAAACATGTTATATTTGTAG+TGG + Chr6:12631762-12631781 None:intergenic 20.0%
!! ATAAAGTTAAGTTACCTTTA+AGG - Chr6:12630184-12630203 MsG0680030993.01.T01:CDS 20.0%
!! CGTTTCAATTGAAAAAATTA+TGG + Chr6:12630979-12630998 None:intergenic 20.0%
!! GACTAAAATTGATATTACAA+GGG - Chr6:12631996-12632015 MsG0680030993.01.T01:intron 20.0%
!! TTAGAAAAATATGGATGATA+CGG - Chr6:12630403-12630422 MsG0680030993.01.T01:CDS 20.0%
!!! ACTTGTTCAATTTGTTTAAA+AGG + Chr6:12632475-12632494 None:intergenic 20.0%
!!! ATATACCTCTTTCTTATTTT+TGG + Chr6:12632073-12632092 None:intergenic 20.0%
!!! ATTGTTCTAAAATCAATCAA+AGG - Chr6:12632361-12632380 MsG0680030993.01.T01:CDS 20.0%
!!! ATTTTTGAGATTATAAGATG+TGG + Chr6:12631824-12631843 None:intergenic 20.0%
!!! CTAATTGATTTGTCAAATTT+TGG - Chr6:12631260-12631279 MsG0680030993.01.T01:CDS 20.0%
!!! TCAATTAGATTTTTGTTTGA+TGG + Chr6:12631248-12631267 None:intergenic 20.0%
!!! TTTGTTTTAGTTTCAAAGTA+AGG - Chr6:12631974-12631993 MsG0680030993.01.T01:intron 20.0%
! AAAATTATGGTATAGCATAG+TGG + Chr6:12630966-12630985 None:intergenic 25.0%
! AAAGACCAAAAATAAGAAAG+AGG - Chr6:12632065-12632084 MsG0680030993.01.T01:intron 25.0%
! AACTCATCCTTAGAAAAATA+TGG - Chr6:12630394-12630413 MsG0680030993.01.T01:CDS 25.0%
! AAGGATTGTAAATTCTTACA+TGG - Chr6:12632264-12632283 MsG0680030993.01.T01:CDS 25.0%
! ATAAGATGTGGTAAATTTGT+AGG + Chr6:12631812-12631831 None:intergenic 25.0%
! ATATAGGTTTAACACAAACA+AGG - Chr6:12632245-12632264 MsG0680030993.01.T01:CDS 25.0%
! ATGTACTCATAATTGTAAGA+GGG + Chr6:12631296-12631315 None:intergenic 25.0%
! ATTTGATGTTAACAGATACA+TGG - Chr6:12631194-12631213 MsG0680030993.01.T01:CDS 25.0%
! CATTGTTATAATAAAGCTAG+TGG - Chr6:12631638-12631657 MsG0680030993.01.T01:CDS 25.0%
! CGATTTCAAACATATTTGTT+TGG + Chr6:12630875-12630894 None:intergenic 25.0%
! GAAACTAAAACAAAACAAGA+AGG + Chr6:12631968-12631987 None:intergenic 25.0%
! GATATTGGAATTATGATTAC+TGG - Chr6:12631590-12631609 MsG0680030993.01.T01:CDS 25.0%
! GGACTAAAATTGATATTACA+AGG - Chr6:12631995-12632014 MsG0680030993.01.T01:intron 25.0%
! TACATTAGAAACACTTTCAT+TGG - Chr6:12631458-12631477 MsG0680030993.01.T01:CDS 25.0%
! TATGTACTCATAATTGTAAG+AGG + Chr6:12631297-12631316 None:intergenic 25.0%
! TGAACATTTCTAATAAGGTT+AGG + Chr6:12632613-12632632 None:intergenic 25.0%
! TGTGAATGGAATGAATTTAA+AGG - Chr6:12632513-12632532 MsG0680030993.01.T01:CDS 25.0%
!! AAAATGATCAAATTTTACCG+AGG - Chr6:12632027-12632046 MsG0680030993.01.T01:intron 25.0%
!! AAAGTCTTTTGTCTACAAAA+AGG + Chr6:12631032-12631051 None:intergenic 25.0%
!! ATGTCAAATTTGATGTCTTT+TGG + Chr6:12631150-12631169 None:intergenic 25.0%
!! GTATCATCCATATTTTTCTA+AGG + Chr6:12630404-12630423 None:intergenic 25.0%
!! TGTTTCTAATGTATGTTTCA+TGG + Chr6:12631451-12631470 None:intergenic 25.0%
!!! ATATTGACTCAAGAAAAGAA+AGG + Chr6:12631115-12631134 None:intergenic 25.0%
!!! TAGAATTTTGATGTTAATGC+AGG - Chr6:12630462-12630481 MsG0680030993.01.T01:CDS 25.0%
!!! TATAATAAAGCTAGTGGATT+TGG - Chr6:12631644-12631663 MsG0680030993.01.T01:CDS 25.0%
!!! TATTGACTCAAGAAAAGAAA+GGG + Chr6:12631114-12631133 None:intergenic 25.0%
!!! TATTTTTCTAAGGATGAGTT+AGG + Chr6:12630394-12630413 None:intergenic 25.0%
ATGATATCTATGCATGGAAA+TGG - Chr6:12632547-12632566 MsG0680030993.01.T01:CDS 30.0%
CAATATTCTTTAAGTGCTAG+TGG - Chr6:12632631-12632650 MsG0680030993.01.T01:CDS 30.0%
GTTTGATGGAAAATTGTTTG+AGG + Chr6:12631234-12631253 None:intergenic 30.0%
TTATGAGTACATAACACTCA+AGG - Chr6:12631304-12631323 MsG0680030993.01.T01:CDS 30.0%
TTCATCAAAAACCCTTTACT+TGG + Chr6:12630598-12630617 None:intergenic 30.0%
TTGAGGCTAAAAGTAAAACA+TGG - Chr6:12632125-12632144 MsG0680030993.01.T01:intron 30.0%
TTGGACTAAAATTCCATTTG+TGG + Chr6:12631423-12631442 None:intergenic 30.0%
! ACATTTCTAAGAGCATGATT+AGG + Chr6:12632667-12632686 None:intergenic 30.0%
! AGTAAAGGGTTTTTGATGAA+TGG - Chr6:12630598-12630617 MsG0680030993.01.T01:CDS 30.0%
! GGAATTTATTTGAAACTACC+AGG - Chr6:12631674-12631693 MsG0680030993.01.T01:intron 30.0%
! TCAATCAAAGGCATAGTTAA+TGG - Chr6:12632373-12632392 MsG0680030993.01.T01:CDS 30.0%
! TTACCTTTAAGGACTATTTC+TGG - Chr6:12630195-12630214 MsG0680030993.01.T01:CDS 30.0%
!! AATGGAATTTTAGTCCAAAG+TGG - Chr6:12631425-12631444 MsG0680030993.01.T01:CDS 30.0%
!! GAAAGAAAATTTTCAGGCAT+TGG - Chr6:12631512-12631531 MsG0680030993.01.T01:CDS 30.0%
!! TGCAAATGTTTTTGTCAAAG+TGG - Chr6:12632729-12632748 MsG0680030993.01.T01:CDS 30.0%
!!! GTGATTTTTTCTGCTGATAT+TGG - Chr6:12631575-12631594 MsG0680030993.01.T01:CDS 30.0%
!!! TGTTTTGATTGAAACAAGTG+AGG - Chr6:12632699-12632718 MsG0680030993.01.T01:CDS 30.0%
ACAATTACCTGTGATGACAT+AGG + Chr6:12630357-12630376 None:intergenic 35.0%
ATCACACATTTCACCACAAA+TGG - Chr6:12631407-12631426 MsG0680030993.01.T01:CDS 35.0%
ATCTCAAGTAGTTTCTTCCT+TGG - Chr6:12632328-12632347 MsG0680030993.01.T01:CDS 35.0%
ATGAATGGCATAATTGACCT+TGG - Chr6:12630613-12630632 MsG0680030993.01.T01:intron 35.0%
ATGTTCTCTGGATCAAATCA+TGG - Chr6:12632415-12632434 MsG0680030993.01.T01:intron 35.0%
ATGTTTGAATTCCATCGAAG+AGG - Chr6:12631846-12631865 MsG0680030993.01.T01:intron 35.0%
ATTGTTGACAACATGTTCTC+TGG - Chr6:12632403-12632422 MsG0680030993.01.T01:intron 35.0%
CGCTGCAAAAAACTTTATGA+AGG + Chr6:12630782-12630801 None:intergenic 35.0%
CTAGATCATTGACCTAAGAA+GGG + Chr6:12630739-12630758 None:intergenic 35.0%
GAGTACCTTGTAACATCATA+TGG - Chr6:12630502-12630521 MsG0680030993.01.T01:CDS 35.0%
GCATGAGTTACAAAGAAACA+AGG + Chr6:12630162-12630181 None:intergenic 35.0%
GGAATCATGTTTGGTTAAAG+AGG + Chr6:12630265-12630284 None:intergenic 35.0%
GTAAAACATGGTACATATGC+AGG - Chr6:12632137-12632156 MsG0680030993.01.T01:intron 35.0%
GTTGCTAGAAATGTTGTGAA+TGG - Chr6:12632499-12632518 MsG0680030993.01.T01:intron 35.0%
TAAGAAGTTGCAGCAAAACA+AGG - Chr6:12631070-12631089 MsG0680030993.01.T01:intron 35.0%
TCAGCAATGATATCTATGCA+TGG - Chr6:12632541-12632560 MsG0680030993.01.T01:CDS 35.0%
TCTAGATCATTGACCTAAGA+AGG + Chr6:12630740-12630759 None:intergenic 35.0%
TGAAGCAATGGAATCATGTT+TGG + Chr6:12630274-12630293 None:intergenic 35.0%
TGATGTTAACAGATACATGG+AGG - Chr6:12631197-12631216 MsG0680030993.01.T01:CDS 35.0%
TGTTTGAATTCCATCGAAGA+GGG - Chr6:12631847-12631866 MsG0680030993.01.T01:intron 35.0%
!! AATAAAGCTAGTGGATTTGG+TGG - Chr6:12631647-12631666 MsG0680030993.01.T01:CDS 35.0%
!! GCATTGGAATTAGTCTTCAA+GGG - Chr6:12631528-12631547 MsG0680030993.01.T01:CDS 35.0%
!! TTGATGTTTTGTTCTAGCCT+CGG + Chr6:12632047-12632066 None:intergenic 35.0%
AATGGCATAATTGACCTTGG+AGG - Chr6:12630616-12630635 MsG0680030993.01.T01:intron 40.0%
ATTGGTCAACACATAACTGC+AGG - Chr6:12631476-12631495 MsG0680030993.01.T01:CDS 40.0%
CAGCACCATATGATGTTACA+AGG + Chr6:12630510-12630529 None:intergenic 40.0%
CCACCAGAAATAGTCCTTAA+AGG + Chr6:12630201-12630220 None:intergenic 40.0%
CTAGACTCAAACTTCAAAGC+TGG - Chr6:12631335-12631354 MsG0680030993.01.T01:CDS 40.0%
CTCATAATTGTAAGAGGGTG+AGG + Chr6:12631291-12631310 None:intergenic 40.0%
CTGCAAAAGGTCCAAGTAAA+GGG - Chr6:12630584-12630603 MsG0680030993.01.T01:CDS 40.0%
CTTGAGATGTGAAGTTGAAC+AGG + Chr6:12632316-12632335 None:intergenic 40.0%
GAACAATCTTTGCATCACCA+AGG + Chr6:12632348-12632367 None:intergenic 40.0%
GCTCAGATTAATCTTCAAGG+TGG - Chr6:12630640-12630659 MsG0680030993.01.T01:intron 40.0%
GGTACTCATGTGATTTCTTC+AGG + Chr6:12630489-12630508 None:intergenic 40.0%
GGTCAAGCTAACACAATTTC+TGG - Chr6:12631611-12631630 MsG0680030993.01.T01:CDS 40.0%
GGTGCTCAGATTAATCTTCA+AGG - Chr6:12630637-12630656 MsG0680030993.01.T01:intron 40.0%
GTGCTATCTGAATTTCCTGT+TGG + Chr6:12630535-12630554 None:intergenic 40.0%
TAGGAGATGACATAGGAGAA+GGG + Chr6:12630326-12630345 None:intergenic 40.0%
TGCATGGAAATGGAACTTCA+TGG - Chr6:12632557-12632576 MsG0680030993.01.T01:CDS 40.0%
TGGACTTATTCTTGCCATTG+TGG + Chr6:12630115-12630134 None:intergenic 40.0%
TGGCAAGAATAAGTCCATTG+TGG - Chr6:12630118-12630137 MsG0680030993.01.T01:CDS 40.0%
TGTATGTTTCATGGCCACTT+TGG + Chr6:12631442-12631461 None:intergenic 40.0%
TGTTTGCAGAAACCCTTCTT+AGG - Chr6:12630724-12630743 MsG0680030993.01.T01:intron 40.0%
TTAAGTACAACCCTCTTCGA+TGG + Chr6:12631860-12631879 None:intergenic 40.0%
! ATCAGAAGCATGAACCACAA+TGG + Chr6:12630135-12630154 None:intergenic 40.0%
! CAAACCTTTGCATTTTCCAG+TGG - Chr6:12630678-12630697 MsG0680030993.01.T01:intron 40.0%
!! CCTTTAAGGACTATTTCTGG+TGG - Chr6:12630198-12630217 MsG0680030993.01.T01:CDS 40.0%
!! GGCATTGGAATTAGTCTTCA+AGG - Chr6:12631527-12631546 MsG0680030993.01.T01:CDS 40.0%
ACCTGTGATGACATAGGAGA+AGG + Chr6:12630351-12630370 None:intergenic 45.0%
ATCAGCTATGGCTGCTAGAA+GGG + Chr6:12630563-12630582 None:intergenic 45.0%
CCTGTGATGACATAGGAGAA+GGG + Chr6:12630350-12630369 None:intergenic 45.0%
CTAGGAGATGACATAGGAGA+AGG + Chr6:12630327-12630346 None:intergenic 45.0%
GACTCAAACTTCAAAGCTGG+AGG - Chr6:12631338-12631357 MsG0680030993.01.T01:CDS 45.0%
GATTAATCTGAGCACCTCCA+AGG + Chr6:12630633-12630652 None:intergenic 45.0%
GCTGCAAAAGGTCCAAGTAA+AGG - Chr6:12630583-12630602 MsG0680030993.01.T01:CDS 45.0%
! ACCTTTTGCAGCATCAGCTA+TGG + Chr6:12630575-12630594 None:intergenic 45.0%
! TGAAGATGGTGGTGAAGCAA+TGG + Chr6:12630286-12630305 None:intergenic 45.0%
!! TCATATGGTGCTGATCCAAC+AGG - Chr6:12630517-12630536 MsG0680030993.01.T01:CDS 45.0%
!! ATAAATTAAAAAATTTATTG+AGG - Chr6:12632108-12632127 MsG0680030993.01.T01:intron 5.0%
!! TTATTTATATATTAAAGTTA+AGG - Chr6:12631720-12631739 MsG0680030993.01.T01:intron 5.0%
AGATTTCCAACACCAGCCAC+TGG + Chr6:12630697-12630716 None:intergenic 50.0%
ATAGGAGAAGGGCTAGGAGA+GGG + Chr6:12630315-12630334 None:intergenic 50.0%
CATCAGCTATGGCTGCTAGA+AGG + Chr6:12630564-12630583 None:intergenic 50.0%
CCAGCCACTGGAAAATGCAA+AGG + Chr6:12630685-12630704 None:intergenic 50.0%
CCCTTCTCCTATGTCATCAC+AGG - Chr6:12630347-12630366 MsG0680030993.01.T01:CDS 50.0%
GAAGGGCTAGGAGATGACAT+AGG + Chr6:12630333-12630352 None:intergenic 50.0%
GAGGGTGAGAATGAAGATGG+TGG + Chr6:12630297-12630316 None:intergenic 50.0%
GATGACATAGGAGAAGGGCT+AGG + Chr6:12630321-12630340 None:intergenic 50.0%
GCCATAGCTGATGCTGCAAA+AGG - Chr6:12630571-12630590 MsG0680030993.01.T01:CDS 50.0%
GGAGAGGGTGAGAATGAAGA+TGG + Chr6:12630300-12630319 None:intergenic 50.0%
GGTCAACACATAACTGCAGG+AGG - Chr6:12631479-12631498 MsG0680030993.01.T01:CDS 50.0%
! CATTTTCCAGTGGCTGGTGT+TGG - Chr6:12630688-12630707 MsG0680030993.01.T01:intron 50.0%
! CCTTTGCATTTTCCAGTGGC+TGG - Chr6:12630682-12630701 MsG0680030993.01.T01:intron 50.0%
! GGCTGGTGTTGGAAATCTCA+TGG - Chr6:12630699-12630718 MsG0680030993.01.T01:intron 50.0%
!! GCTAGTGGATTTGGTGGTAC+AGG - Chr6:12631653-12631672 MsG0680030993.01.T01:intron 50.0%
CATAGGAGAAGGGCTAGGAG+AGG + Chr6:12630316-12630335 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr6 gene 12630105 12632771 12630105 ID=MsG0680030993.01;Name=MsG0680030993.01
Chr6 mRNA 12630105 12632771 12630105 ID=MsG0680030993.01.T01;Parent=MsG0680030993.01;Name=MsG0680030993.01.T01;_AED=0.27;_eAED=0.27;_QI=0|0|0|1|1|1|4|0|502
Chr6 exon 12632508 12632771 12632508 ID=MsG0680030993.01.T01:exon:8957;Parent=MsG0680030993.01.T01
Chr6 exon 12632156 12632392 12632156 ID=MsG0680030993.01.T01:exon:8956;Parent=MsG0680030993.01.T01
Chr6 exon 12631181 12631667 12631181 ID=MsG0680030993.01.T01:exon:8955;Parent=MsG0680030993.01.T01
Chr6 exon 12630105 12630625 12630105 ID=MsG0680030993.01.T01:exon:8954;Parent=MsG0680030993.01.T01
Chr6 CDS 12632508 12632771 12632508 ID=MsG0680030993.01.T01:cds;Parent=MsG0680030993.01.T01
Chr6 CDS 12632156 12632392 12632156 ID=MsG0680030993.01.T01:cds;Parent=MsG0680030993.01.T01
Chr6 CDS 12631181 12631667 12631181 ID=MsG0680030993.01.T01:cds;Parent=MsG0680030993.01.T01
Chr6 CDS 12630105 12630625 12630105 ID=MsG0680030993.01.T01:cds;Parent=MsG0680030993.01.T01
Gene Sequence

>MsG0680030993.01.T01

ATGAAAACCACAATGGCAAGAATAAGTCCATTGTGGTTCATGCTTCTGATCATGCCTTGTTTCTTTGTAACTCATGCTTATAAAGTTAAGTTACCTTTAAGGACTATTTCTGGTGGAACACATCATGATGCAATGCTTCAATTTAATGCATTCAAAGCCTCTTTAACCAAACATGATTCCATTGCTTCACCACCATCTTCATTCTCACCCTCTCCTAGCCCTTCTCCTATGTCATCTCCTAGCCCTTCTCCTATGTCATCACAGGACCTGAAGAAATCACATGAGTACCTTGTAACATCATATGGTGCTGATCCAACAGGAAATTCAGATAGCACAGAAGCCCTTCTAGCAGCCATAGCTGATGCTGCAAAAGGTCCAAGTAAAGGGTTTTTGATGAATGGCATAATTGACCTTGGAGGTGCTCAGATTAATCTTCAAGGTGGAAGTTACTTGATCAGCAAACCTTTGCATTTTCCAGTGGCTGGTGTTGGAAATCTCATGATACATGGAGGAACAATAAAAGCCTCAAACAATTTTCCATCAAACAAAAATCTAATTGATTTGTCAAATTTTGGTTCAACCTCACCCTCTTACAATTATGAGTACATAACACTCAAGGATCTCTTTCTAGACTCAAACTTCAAAGCTGGAGGCATTTCAATCACAAATTCACTAAGAATCAACATAGACAATTGTTACATCACACATTTCACCACAAATGGAATTTTAGTCCAAAGTGGCCATGAAACATACATTAGAAACACTTTCATTGGTCAACACATAACTGCAGGAGGTGACAAAAATGAAAGAAAATTTTCAGGCATTGGAATTAGTCTTCAAGGGAATGATAATGCAATTACAGATGTTGTGATTTTTTCTGCTGATATTGGAATTATGATTACTGGTCAAGCTAACACAATTTCTGGTGTACATTGTTATAATAAAGCTAGTGGATTTGGTGGTACAGGAATTTATTTGAAACTACCAGGTTTAACACAAACAAGGATTGTAAATTCTTACATGGATTACACAAACATTGTTGCTGAAGATCCTGTTCAACTTCACATCTCAAGTAGTTTCTTCCTTGGTGATGCAAAGATTGTTCTAAAATCAATCAAAGGCATAGTTAATGGTCTCAACATTGTTGACAACATGTTCTCTGGATCAAATCATGGTGATGAAATTGTGAAACTAGACACATCAAATTGTCCTTTTAAACAAATTGAACAAGTTTTTGTTGCTAGAAATGTTGTGAATGGAATGAATTTAAAGGCTACTTCAGCAATGATATCTATGCATGGAAATGGAACTTCATGGATTGCTGATTTTAACAAAATTTTGATTTTTCCTAACCTTATTAGAAATGTTCAATATTCTTTAAGTGCTAGTGGTAATACATTTCCTAATCATGCTCTTAGAAATGTGTCTCATAATATTGTTTTGATTGAAACAAGTGAGGCTGTGACTGCAAATGTTTTTGTCAAAGTGGATCAAAGTATTACAAGTTGA
Protein sequence

>MsG0680030993.01.T01

MKTTMARISPLWFMLLIMPCFFVTHAYKVKLPLRTISGGTHHDAMLQFNAFKASLTKHDSIASPPSSFSPSPSPSPMSSPSPSPMSSQDLKKSHEYLVTSYGADPTGNSDSTEALLAAIADAAKGPSKGFLMNGIIDLGGAQINLQGGSYLISKPLHFPVAGVGNLMIHGGTIKASNNFPSNKNLIDLSNFGSTSPSYNYEYITLKDLFLDSNFKAGGISITNSLRINIDNCYITHFTTNGILVQSGHETYIRNTFIGQHITAGGDKNERKFSGIGISLQGNDNAITDVVIFSADIGIMITGQANTISGVHCYNKASGFGGTGIYLKLPGLTQTRIVNSYMDYTNIVAEDPVQLHISSSFFLGDAKIVLKSIKGIVNGLNIVDNMFSGSNHGDEIVKLDTSNCPFKQIEQVFVARNVVNGMNLKATSAMISMHGNGTSWIADFNKILIFPNLIRNVQYSLSASGNTFPNHALRNVSHNIVLIETSEAVTANVFVKVDQSITS*