AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680031147.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031147.01.T01 MTR_6g016880 99.078 434 4 0 1 434 1 434 0.0 907
MsG0680031147.01.T01 MTR_7g019120 71.991 432 120 1 1 431 1 432 0.0 689
MsG0680031147.01.T01 MTR_6g016875 53.953 430 179 7 1 426 1 415 1.18e-166 475
MsG0680031147.01.T01 MTR_2g016060 51.695 354 149 11 79 419 56 400 1.40e-121 360
MsG0680031147.01.T01 MTR_8g099300 41.429 420 226 5 12 419 8 419 9.42e-115 343
MsG0680031147.01.T01 MTR_8g027900 45.143 350 187 2 74 419 207 555 9.04e-114 345
MsG0680031147.01.T01 MTR_6g007777 43.767 361 195 6 71 427 109 465 4.79e-109 330
MsG0680031147.01.T01 MTR_5g035070 45.355 366 183 9 65 420 76 434 1.43e-104 317
MsG0680031147.01.T01 MTR_5g035090 43.785 354 180 9 78 420 83 428 3.53e-103 313
MsG0680031147.01.T01 MTR_8g104970 41.848 368 192 8 76 430 118 476 4.16e-103 315
MsG0680031147.01.T01 MTR_7g033230 41.620 358 187 8 76 420 262 610 7.94e-99 308
MsG0680031147.01.T01 MTR_7g033230 41.620 358 187 8 76 420 332 680 4.54e-98 308
MsG0680031147.01.T01 MTR_3g109840 38.955 421 231 12 10 420 12 416 8.02e-97 297
MsG0680031147.01.T01 MTR_5g035150 37.590 415 241 10 17 420 25 432 2.16e-93 288
MsG0680031147.01.T01 MTR_5g035080 39.831 354 195 10 78 420 75 421 1.45e-91 284
MsG0680031147.01.T01 MTR_7g019140 69.591 171 51 1 1 170 1 171 4.02e-84 255
MsG0680031147.01.T01 MTR_1g076690 35.417 384 219 9 52 422 206 573 2.49e-78 254
MsG0680031147.01.T01 MTR_6g061710 34.250 400 239 9 41 422 124 517 1.81e-76 247
MsG0680031147.01.T01 MTR_7g019130 72.800 125 34 0 195 319 1 125 3.34e-67 211
MsG0680031147.01.T01 MTR_5g035140 39.370 254 140 7 185 428 25 274 1.26e-62 204
MsG0680031147.01.T01 MTR_7g094750 31.050 438 256 11 20 433 31 446 8.97e-57 194
MsG0680031147.01.T01 MTR_0929s0010 66.142 127 42 1 1 126 1 127 1.05e-56 183
MsG0680031147.01.T01 MTR_2g022560 33.333 378 221 13 54 419 79 437 1.89e-51 180
MsG0680031147.01.T01 MTR_0136s0010 31.152 382 195 11 74 422 166 512 9.69e-49 174
MsG0680031147.01.T01 MTR_7g093450 31.169 385 211 13 74 432 244 600 2.67e-47 171
MsG0680031147.01.T01 MTR_1g058380 30.959 365 216 12 72 419 49 394 7.16e-47 166
MsG0680031147.01.T01 MTR_3g464570 30.114 352 220 9 77 419 42 376 1.08e-45 162
MsG0680031147.01.T01 MTR_3g070900 31.549 355 215 11 76 415 104 445 2.71e-45 163
MsG0680031147.01.T01 MTR_4g126950 28.302 371 228 11 74 427 105 454 9.55e-45 162
MsG0680031147.01.T01 MTR_8g069790 30.688 378 219 12 63 420 164 518 1.36e-44 163
MsG0680031147.01.T01 MTR_5g033800 29.301 372 223 10 67 419 133 483 2.29e-44 161
MsG0680031147.01.T01 MTR_7g109550 31.302 361 209 9 78 424 137 472 2.31e-44 161
MsG0680031147.01.T01 MTR_5g071350 30.000 360 220 10 76 419 56 399 9.69e-44 158
MsG0680031147.01.T01 MTR_7g070060 31.302 361 224 12 69 415 55 405 8.76e-43 155
MsG0680031147.01.T01 MTR_5g059400 28.504 421 241 13 40 427 134 527 2.06e-42 157
MsG0680031147.01.T01 MTR_1g116130 28.504 421 241 13 40 427 134 527 2.06e-42 157
MsG0680031147.01.T01 MTR_8g463790 28.689 366 214 11 76 419 69 409 5.05e-42 154
MsG0680031147.01.T01 MTR_4g014440 31.421 366 226 14 64 415 49 403 9.92e-42 152
MsG0680031147.01.T01 MTR_4g121560 30.748 361 222 10 72 419 108 453 2.49e-41 153
MsG0680031147.01.T01 MTR_8g093530 28.571 357 222 11 75 422 87 419 2.17e-40 149
MsG0680031147.01.T01 MTR_4g125060 28.571 399 230 14 52 419 97 471 7.60e-40 149
MsG0680031147.01.T01 MTR_6g016240 27.676 383 215 11 77 426 70 423 1.05e-39 147
MsG0680031147.01.T01 MTR_5g083260 27.650 434 261 16 14 419 16 424 1.71e-39 147
MsG0680031147.01.T01 MTR_4g125060 28.465 404 224 14 52 419 165 539 2.97e-39 148
MsG0680031147.01.T01 MTR_4g125060 28.533 375 212 12 72 419 165 510 3.11e-39 148
MsG0680031147.01.T01 MTR_0929s0020 68.966 87 27 0 195 281 1 87 4.80e-39 135
MsG0680031147.01.T01 MTR_3g071650 29.609 358 220 12 78 419 89 430 1.53e-38 144
MsG0680031147.01.T01 MTR_4g016940 29.609 358 220 12 78 419 86 427 2.07e-38 144
MsG0680031147.01.T01 MTR_4g092830 27.701 361 226 7 78 419 48 392 2.14e-38 144
MsG0680031147.01.T01 MTR_2g015720 30.769 351 204 10 78 421 42 360 2.73e-38 142
MsG0680031147.01.T01 MTR_3g021090 27.957 372 231 11 69 433 22 363 6.37e-38 142
MsG0680031147.01.T01 MTR_5g082880 29.050 358 223 13 76 415 163 507 1.63e-37 143
MsG0680031147.01.T01 MTR_7g094750 30.744 309 188 8 20 313 31 328 3.44e-37 138
MsG0680031147.01.T01 MTR_3g021060 27.887 355 216 9 69 415 37 359 7.73e-37 138
MsG0680031147.01.T01 MTR_3g035830 28.329 353 217 11 69 415 22 344 1.46e-36 137
MsG0680031147.01.T01 MTR_2g091175 29.915 351 203 11 78 419 50 366 2.54e-36 137
MsG0680031147.01.T01 MTR_4g087730 29.014 355 212 9 75 421 42 364 3.50e-36 136
MsG0680031147.01.T01 MTR_4g088030 28.895 353 213 9 71 415 24 346 6.03e-35 133
MsG0680031147.01.T01 MTR_4g014430 29.363 361 224 12 73 419 103 446 7.38e-35 134
MsG0680031147.01.T01 MTR_8g093870 27.224 371 210 11 78 419 133 472 1.10e-34 134
MsG0680031147.01.T01 MTR_7g068920 29.558 362 215 14 78 419 80 421 2.80e-34 132
MsG0680031147.01.T01 MTR_2g073510 28.409 352 219 9 74 419 29 353 9.91e-34 129
MsG0680031147.01.T01 MTR_4g079700 27.930 401 240 14 30 419 1 363 6.76e-33 127
MsG0680031147.01.T01 MTR_3g049330 27.714 350 217 9 77 419 30 350 1.84e-32 126
MsG0680031147.01.T01 MTR_5g034810 28.900 391 226 15 39 419 4 352 8.29e-32 124
MsG0680031147.01.T01 MTR_1g050448 26.214 412 252 12 20 419 4 375 1.30e-31 124
MsG0680031147.01.T01 MTR_1g112210 27.042 355 223 9 74 419 55 382 3.73e-31 123
MsG0680031147.01.T01 MTR_1g111010 28.212 358 205 13 76 423 30 345 4.48e-31 122
MsG0680031147.01.T01 MTR_3g090120 27.273 363 221 11 73 419 124 459 6.45e-31 124
MsG0680031147.01.T01 MTR_1g112210 27.324 355 209 11 74 419 55 369 1.69e-30 121
MsG0680031147.01.T01 MTR_5g035120 51.087 92 45 0 76 167 73 164 9.01e-30 114
MsG0680031147.01.T01 MTR_5g033800 30.000 260 155 7 67 312 133 379 1.02e-29 119
MsG0680031147.01.T01 MTR_2g073500 29.178 353 203 11 78 419 29 345 1.37e-29 118
MsG0680031147.01.T01 MTR_7g070060 34.031 191 117 5 69 254 55 241 3.53e-27 110
MsG0680031147.01.T01 MTR_7g070060 29.333 300 187 12 130 415 15 303 2.60e-23 100
MsG0680031147.01.T01 MTR_3g464570 27.178 287 183 9 142 419 3 272 1.19e-22 97.4
MsG0680031147.01.T01 MTR_7g117160 35.079 191 74 8 230 418 47 189 9.92e-22 92.8
MsG0680031147.01.T01 MTR_5g069320 26.490 302 147 14 124 412 147 386 7.57e-16 79.3
MsG0680031147.01.T01 MTR_2g022580 36.975 119 62 5 138 247 2 116 6.23e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031147.01.T01 AT5G15900 61.029 408 152 4 21 426 14 416 0.0 545
MsG0680031147.01.T01 AT5G15900 61.029 408 152 4 21 426 33 435 0.0 545
MsG0680031147.01.T01 AT3G02440 62.029 345 127 4 78 420 135 477 2.68e-164 471
MsG0680031147.01.T01 AT3G02440 62.029 345 127 4 78 420 127 469 4.20e-164 471
MsG0680031147.01.T01 AT5G15890 54.005 387 169 5 37 422 147 525 5.78e-163 469
MsG0680031147.01.T01 AT1G01430 41.363 411 222 9 30 429 54 456 2.33e-112 338
MsG0680031147.01.T01 AT3G28150 40.306 392 224 4 34 423 31 414 9.96e-111 332
MsG0680031147.01.T01 AT4G01080 46.133 375 164 11 70 423 78 435 1.41e-106 323
MsG0680031147.01.T01 AT4G23790 37.198 414 236 8 29 419 15 427 1.83e-103 314
MsG0680031147.01.T01 AT1G70230 36.659 431 227 10 14 420 4 412 1.83e-100 306
MsG0680031147.01.T01 AT4G11090 37.108 415 242 9 27 424 18 430 8.33e-100 305
MsG0680031147.01.T01 AT4G25360 33.586 396 240 7 50 426 140 531 3.85e-77 249
MsG0680031147.01.T01 AT4G25360 33.586 396 240 7 50 426 140 531 3.85e-77 249
MsG0680031147.01.T01 AT5G51640 34.748 377 228 7 59 422 120 491 1.62e-75 244
MsG0680031147.01.T01 AT3G06080 33.962 371 218 11 74 430 99 456 9.50e-56 191
MsG0680031147.01.T01 AT5G19160 31.757 444 247 17 20 428 32 454 2.27e-52 182
MsG0680031147.01.T01 AT3G12060 32.546 381 215 13 74 433 192 551 2.08e-50 179
MsG0680031147.01.T01 AT5G64470 32.500 360 205 11 78 419 55 394 8.22e-49 171
MsG0680031147.01.T01 AT2G14530 29.833 419 225 16 46 424 22 411 1.19e-48 171
MsG0680031147.01.T01 AT5G06700 32.105 380 218 11 72 432 249 607 1.05e-47 172
MsG0680031147.01.T01 AT5G64470 32.240 366 204 12 78 419 55 400 2.70e-47 167
MsG0680031147.01.T01 AT1G60790 30.025 403 236 12 43 424 161 538 4.06e-47 170
MsG0680031147.01.T01 AT5G06230 30.458 371 212 12 73 419 16 364 4.78e-46 163
MsG0680031147.01.T01 AT3G62390 30.357 392 218 11 60 423 111 475 5.24e-46 166
MsG0680031147.01.T01 AT5G20590 29.396 381 226 12 61 422 126 482 7.16e-46 166
MsG0680031147.01.T01 AT5G06230 30.458 371 212 12 73 419 57 405 1.06e-45 163
MsG0680031147.01.T01 AT3G11570 29.493 434 251 13 15 427 28 427 3.67e-45 162
MsG0680031147.01.T01 AT2G30010 31.680 363 209 12 76 419 54 396 1.31e-43 157
MsG0680031147.01.T01 AT5G64020 30.133 375 206 13 78 419 57 408 1.43e-43 157
MsG0680031147.01.T01 AT2G30010 31.768 362 208 12 77 419 98 439 1.61e-43 158
MsG0680031147.01.T01 AT5G49340 31.139 395 226 13 45 419 73 441 2.03e-43 158
MsG0680031147.01.T01 AT2G40160 28.501 407 238 15 51 431 58 437 3.96e-43 157
MsG0680031147.01.T01 AT1G73140 28.771 358 224 9 76 419 65 405 8.98e-43 155
MsG0680031147.01.T01 AT2G40160 28.767 365 217 12 75 415 74 419 4.71e-42 154
MsG0680031147.01.T01 AT1G48880 30.120 415 237 14 17 419 66 439 6.83e-42 154
MsG0680031147.01.T01 AT2G40320 28.710 411 263 10 24 419 27 422 1.12e-41 153
MsG0680031147.01.T01 AT5G58600 29.398 415 253 13 24 419 7 400 5.08e-41 150
MsG0680031147.01.T01 AT3G55990 29.859 355 221 11 76 415 138 479 1.36e-40 151
MsG0680031147.01.T01 AT2G40150 28.255 361 237 10 78 423 71 424 4.71e-40 148
MsG0680031147.01.T01 AT3G11030 30.028 363 217 12 76 419 104 448 6.81e-39 146
MsG0680031147.01.T01 AT5G19160 31.546 317 180 10 20 312 32 335 2.23e-38 142
MsG0680031147.01.T01 AT2G42570 31.332 383 213 14 48 419 21 364 2.24e-38 142
MsG0680031147.01.T01 AT2G38320 29.594 419 256 16 15 415 3 400 5.59e-38 142
MsG0680031147.01.T01 AT1G29050 27.841 352 216 8 77 421 60 380 7.13e-38 142
MsG0680031147.01.T01 AT5G01360 26.741 359 234 10 76 419 34 378 3.51e-37 140
MsG0680031147.01.T01 AT5G01360 26.816 358 235 9 76 419 90 434 7.75e-37 140
MsG0680031147.01.T01 AT2G30900 30.390 385 220 17 47 419 17 365 8.00e-37 138
MsG0680031147.01.T01 AT2G34070 27.089 347 226 7 77 421 64 385 1.12e-36 138
MsG0680031147.01.T01 AT3G06080 35.458 251 140 8 74 312 99 339 3.54e-36 136
MsG0680031147.01.T01 AT5G20680 27.500 400 226 14 55 419 87 457 4.34e-36 138
MsG0680031147.01.T01 AT5G20680 27.500 400 226 14 55 419 181 551 7.09e-36 139
MsG0680031147.01.T01 AT5G20680 27.500 400 226 14 55 419 181 551 7.09e-36 139
MsG0680031147.01.T01 AT5G20680 27.500 400 226 14 55 419 181 551 7.09e-36 139
MsG0680031147.01.T01 AT5G20680 27.500 400 226 14 55 419 181 551 7.09e-36 139
MsG0680031147.01.T01 AT5G20680 27.500 400 226 14 55 419 163 533 8.22e-36 139
MsG0680031147.01.T01 AT5G01620 28.650 363 219 11 76 419 108 449 1.20e-35 137
MsG0680031147.01.T01 AT5G01620 28.650 363 219 11 76 419 108 449 1.20e-35 137
MsG0680031147.01.T01 AT5G01620 28.650 363 219 11 76 419 116 457 1.78e-35 136
MsG0680031147.01.T01 AT2G37720 28.496 379 218 13 68 419 130 482 1.84e-35 137
MsG0680031147.01.T01 AT3G14850 28.612 353 209 11 74 415 30 350 1.52e-33 129
MsG0680031147.01.T01 AT5G64470 31.250 272 159 7 78 333 55 314 2.59e-33 128
MsG0680031147.01.T01 AT5G64470 31.136 273 160 7 78 334 55 315 3.26e-33 127
MsG0680031147.01.T01 AT2G31110 27.806 392 238 11 35 419 9 362 4.85e-32 125
MsG0680031147.01.T01 AT2G38320 29.630 324 199 12 108 415 7 317 4.30e-30 119
MsG0680031147.01.T01 AT5G58600 29.293 297 187 8 24 311 7 289 1.74e-29 117
MsG0680031147.01.T01 AT1G78710 27.123 365 221 12 66 419 26 356 3.04e-29 117
MsG0680031147.01.T01 AT3G62390 28.881 277 162 7 60 314 111 374 4.37e-29 118
MsG0680031147.01.T01 AT2G40160 31.707 205 124 4 51 251 58 250 1.51e-27 112
MsG0680031147.01.T01 AT5G06230 29.057 265 152 9 73 315 57 307 2.51e-27 111
MsG0680031147.01.T01 AT5G20590 28.464 267 161 8 61 312 126 377 4.14e-27 112
MsG0680031147.01.T01 AT3G54260 24.860 358 219 10 78 419 51 374 5.56e-25 105
MsG0680031147.01.T01 AT2G30900 37.500 160 93 4 47 204 17 171 1.29e-23 100
MsG0680031147.01.T01 AT2G31110 29.767 215 135 4 35 249 9 207 1.66e-20 91.3
MsG0680031147.01.T01 AT1G78710 29.189 185 120 4 66 249 19 193 3.87e-17 82.0
MsG0680031147.01.T01 AT2G34070 24.000 275 182 7 149 421 2 251 9.96e-15 74.3
MsG0680031147.01.T01 AT3G14850 26.087 276 165 10 149 415 2 247 7.32e-13 68.6

Find 96 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGAAATGGTTTGAAATTT+AGG 0.143773 6:-15101645 MsG0680031147.01.T01:CDS
CCAATATTTAAGTCTATTAA+TGG 0.170157 6:-15105908 MsG0680031147.01.T01:five_prime_UTR
CAACTTGATATTGTTCTTCT+TGG 0.189980 6:-15101284 MsG0680031147.01.T01:three_prime_UTR
CCATTAATAGACTTAAATAT+TGG 0.193373 6:+15105908 None:intergenic
ATTTCACCATGGCTGCTTAT+TGG 0.198427 6:-15102146 MsG0680031147.01.T01:CDS
CTTGCCTCATTACTCTTAAA+TGG 0.206869 6:+15101739 None:intergenic
AAGGGAAATGAAAGAAGTTT+TGG 0.266458 6:+15105780 None:intergenic
AGAGAAAGGTGTAGGGAAAT+AGG 0.277763 6:+15105752 None:intergenic
AATTGAAAAGGATTGAAAAT+TGG 0.281299 6:+15105306 None:intergenic
TAATTTGTTGGAATTTCTTT+AGG 0.282140 6:+15101259 None:intergenic
ACTGATTTAACAATGTATTA+TGG 0.295531 6:-15101904 MsG0680031147.01.T01:CDS
TTAAGGGTGTGACATTTCTT+AGG 0.298839 6:-15101828 MsG0680031147.01.T01:CDS
CCTTTGTCTTATCCTTTGTT+TGG 0.310847 6:-15105588 MsG0680031147.01.T01:CDS
AGTAATGAGGCAAGGTTAGA+AGG 0.313538 6:-15101730 MsG0680031147.01.T01:CDS
CAATTTCTTGAAATTGTTAG+AGG 0.323954 6:-15105288 MsG0680031147.01.T01:CDS
GAATCAACATTTGAAGAGTT+TGG 0.328520 6:+15105528 None:intergenic
AAATTTCAAACCATTTCTTT+TGG 0.329594 6:+15101648 None:intergenic
CATTAATAGACTTAAATATT+GGG 0.336747 6:+15105909 None:intergenic
TTTGTGTAATATGGTCCTTT+TGG 0.342622 6:+15105432 None:intergenic
TTGTGTTCATTGGTGTTTGC+CGG 0.346366 6:-15101527 MsG0680031147.01.T01:CDS
AGACTATGATACTAATTTGT+TGG 0.350554 6:+15101247 None:intergenic
ATTGGTAATTCACACTCATT+TGG 0.354395 6:+15105324 None:intergenic
AAATATTATTTATGTATGTA+TGG 0.359893 6:-15101399 MsG0680031147.01.T01:three_prime_UTR
ACAACTTGAAGCATTGCTAA+TGG 0.368679 6:-15105877 MsG0680031147.01.T01:five_prime_UTR
CATTGATTTGTCTTCTATCA+AGG 0.377308 6:-15105215 MsG0680031147.01.T01:CDS
AATTGTTAGAGGAAAATCTA+TGG 0.387764 6:-15105277 MsG0680031147.01.T01:CDS
CAAAAGAAGGCCAAAAGAAA+TGG 0.396468 6:-15101658 MsG0680031147.01.T01:CDS
CATCAAAATTGCATGAAGTA+TGG 0.396655 6:-15105384 MsG0680031147.01.T01:CDS
CACTTCATGAACTCAGAATC+TGG 0.401439 6:+15105357 None:intergenic
TGTAGGGAAATAGGAGGATA+AGG 0.407354 6:+15105761 None:intergenic
TTTGTGTATGATACATCTAT+AGG 0.421377 6:+15102207 None:intergenic
TGTATAATGATTGTGTTCAT+TGG 0.428103 6:-15101537 MsG0680031147.01.T01:CDS
AAATCACTCCATGTATCTAT+AGG 0.439104 6:+15101502 None:intergenic
TTTGACTATGTCATACTCAA+TGG 0.443897 6:-15102009 MsG0680031147.01.T01:CDS
CTTGCTAGAAATGTTGAAGA+TGG 0.447896 6:-15101479 MsG0680031147.01.T01:CDS
TGTGTTCATTGGTGTTTGCC+GGG 0.463636 6:-15101526 MsG0680031147.01.T01:CDS
GAGAATGGTATATGGAATCA+AGG 0.466149 6:-15101784 MsG0680031147.01.T01:CDS
CCTTTCTCATAGAATACCAT+TGG 0.468622 6:+15101967 None:intergenic
GGAGTTATATATGATCCAAT+TGG 0.472009 6:-15101698 MsG0680031147.01.T01:CDS
GATCATATATAACTCCATAT+TGG 0.477273 6:+15101705 None:intergenic
ACAATTTCAAGAAATTGAAA+AGG 0.480067 6:+15105294 None:intergenic
AGAAAACAAGAGAAAGGTGT+AGG 0.480466 6:+15105744 None:intergenic
AAAGAGAGAAAACAAGAGAA+AGG 0.484374 6:+15105738 None:intergenic
TTACACAAACAAAACATGTT+GGG 0.484375 6:-15105418 MsG0680031147.01.T01:CDS
GCCATGGTGAAATTGTAACT+TGG 0.501109 6:+15102156 None:intergenic
ATACAAAATTTCCCAAAAGA+AGG 0.501845 6:-15101671 MsG0680031147.01.T01:CDS
GGCAAATGACCGTATCTACT+AGG 0.502399 6:+15101577 None:intergenic
ATCAAGGTGGGAATTGTTTG+AGG 0.502442 6:-15101768 MsG0680031147.01.T01:CDS
CCAATGGTATTCTATGAGAA+AGG 0.509194 6:-15101967 MsG0680031147.01.T01:CDS
CAAACAAAGGATAAGACAAA+GGG 0.511568 6:+15105589 None:intergenic
TGCTTTGAATTCTAATTGAG+TGG 0.513034 6:+15105833 None:intergenic
ATTACACAAACAAAACATGT+TGG 0.513699 6:-15105419 MsG0680031147.01.T01:CDS
ATTGATTTGTCTTCTATCAA+GGG 0.514925 6:-15105214 MsG0680031147.01.T01:intron
GAAAACAAGAGAAAGGTGTA+GGG 0.519811 6:+15105745 None:intergenic
CTGAGTTCATGAAGTGGAGA+TGG 0.523549 6:-15105350 MsG0680031147.01.T01:CDS
GTAGGGAAATAGGAGGATAA+GGG 0.525313 6:+15105762 None:intergenic
GTAATGAGGCAAGGTTAGAA+GGG 0.526044 6:-15101729 MsG0680031147.01.T01:CDS
AAGATGACTATTTCATGAGA+TGG 0.526318 6:-15102185 MsG0680031147.01.T01:CDS
AATGTATTATGGCTATAGAA+AGG 0.534002 6:-15101893 MsG0680031147.01.T01:CDS
GAATGGGTGCCAAATCCAAA+AGG 0.542062 6:-15105447 MsG0680031147.01.T01:CDS
CTCCATGTATCTATAGGCCC+CGG 0.543072 6:+15101508 None:intergenic
CCATGGTGAAATTGTAACTT+GGG 0.548906 6:+15102157 None:intergenic
ATGGTATATGGAATCAAGGT+GGG 0.552248 6:-15101780 MsG0680031147.01.T01:CDS
TATCTACTAGGATGACCATC+TGG 0.553489 6:+15101589 None:intergenic
AAAATTGCATGAAGTATGGT+AGG 0.554471 6:-15105380 MsG0680031147.01.T01:CDS
AAGGTTAGAAGGGACCAATA+TGG 0.554657 6:-15101719 MsG0680031147.01.T01:CDS
TAGAAATGTTGAAGATGGAG+AGG 0.557876 6:-15101474 MsG0680031147.01.T01:CDS
AAAACTGAGAACATCGCAAA+GGG 0.566726 6:-15105954 None:intergenic
GTTATATATGATCCAATTGG+AGG 0.568697 6:-15101695 MsG0680031147.01.T01:CDS
AAATGTTGATTCAATCGAGA+AGG 0.571010 6:-15105517 MsG0680031147.01.T01:CDS
GATGGTCATCCTAGTAGATA+CGG 0.574936 6:-15101586 MsG0680031147.01.T01:CDS
ACTCAACAAGAAAATTCAGA+TGG 0.581680 6:-15102105 MsG0680031147.01.T01:CDS
GAAAGGTGTAGGGAAATAGG+AGG 0.584068 6:+15105755 None:intergenic
GGGTGTCCAATAAGCAGCCA+TGG 0.591946 6:+15102140 None:intergenic
TAAGCCATTTAAGAGTAATG+AGG 0.603193 6:-15101743 MsG0680031147.01.T01:CDS
GGGCTAAGTCTAAGAGAGAG+AGG 0.604499 6:-15101453 MsG0680031147.01.T01:CDS
ATACCATTCTCAAAATGAGA+TGG 0.606970 6:+15101796 None:intergenic
TGCCGGGGCCTATAGATACA+TGG 0.612962 6:-15101510 MsG0680031147.01.T01:CDS
CCAAACAAAGGATAAGACAA+AGG 0.615001 6:+15105588 None:intergenic
GCAATGTTATTGAGACCAGA+TGG 0.619557 6:-15101604 MsG0680031147.01.T01:CDS
CATTTAAGAGTAATGAGGCA+AGG 0.623526 6:-15101738 MsG0680031147.01.T01:CDS
TCATACTCAATGGAGGACAT+TGG 0.627466 6:-15101999 MsG0680031147.01.T01:CDS
TCAGATGGACCAACCCACAC+TGG 0.628911 6:-15102090 MsG0680031147.01.T01:CDS
GACTATGTCATACTCAATGG+AGG 0.630990 6:-15102006 MsG0680031147.01.T01:CDS
GTGTTCATTGGTGTTTGCCG+GGG 0.638635 6:-15101525 MsG0680031147.01.T01:CDS
TAAAACTGAGAACATCGCAA+AGG 0.643633 6:-15105955 None:intergenic
TTGTAGAGACCAGTGTGGGT+TGG 0.646461 6:+15102081 None:intergenic
AGAAATGATGAACCAAACAA+AGG 0.648407 6:+15105576 None:intergenic
AGAAATGTTGAAGATGGAGA+GGG 0.651408 6:-15101473 MsG0680031147.01.T01:CDS
AATGGTATATGGAATCAAGG+TGG 0.651741 6:-15101781 MsG0680031147.01.T01:CDS
ACATTGGTTCTACAAGCCAA+TGG 0.660827 6:-15101983 MsG0680031147.01.T01:CDS
CAGATTCTGAGTTCATGAAG+TGG 0.668427 6:-15105356 MsG0680031147.01.T01:CDS
AAGATTGTAGAGACCAGTGT+GGG 0.682690 6:+15102077 None:intergenic
CCCAAGTTACAATTTCACCA+TGG 0.686237 6:-15102157 MsG0680031147.01.T01:CDS
AAACAAAGGATAAGACAAAG+GGG 0.730288 6:+15105590 None:intergenic
AAAGATTGTAGAGACCAGTG+TGG 0.741443 6:+15102076 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTATTTATGTATGTA+TGG - Chr6:15105788-15105807 MsG0680031147.01.T01:five_prime_UTR 10.0%
!! TATAAAAGTCAATTAAAATA+AGG + Chr6:15104400-15104419 None:intergenic 10.0%
!!! AAATTTATTTTATAGATAGA+TGG + Chr6:15103374-15103393 None:intergenic 10.0%
!!! ATTGCTAATAAAATTATTTT+TGG + Chr6:15101551-15101570 None:intergenic 10.0%
!! AAGGAAATAATTAAATTAGT+TGG + Chr6:15104713-15104732 None:intergenic 15.0%
!! ACTAATTTAATTATTTCCTT+TGG - Chr6:15104713-15104732 MsG0680031147.01.T01:intron 15.0%
!! CATTAATAGACTTAAATATT+GGG + Chr6:15101281-15101300 None:intergenic 15.0%
!! CTAATTTAATTATTTCCTTT+GGG - Chr6:15104714-15104733 MsG0680031147.01.T01:intron 15.0%
!! TAATTAAAGTAGAGTTATTT+GGG + Chr6:15102830-15102849 None:intergenic 15.0%
!! TATTAATTAATTTCAGTTCT+TGG - Chr6:15103719-15103738 MsG0680031147.01.T01:intron 15.0%
!!! AAAATACTTTTAATAGGTTT+TGG - Chr6:15102368-15102387 MsG0680031147.01.T01:intron 15.0%
!!! AAAATTTTCTAAGCTATTTA+AGG + Chr6:15105341-15105360 None:intergenic 15.0%
!!! AAATAGCTTAGAAAATTTTA+AGG - Chr6:15105342-15105361 MsG0680031147.01.T01:CDS 15.0%
!!! AACAAATGATGATATTTTAA+TGG - Chr6:15104195-15104214 MsG0680031147.01.T01:intron 15.0%
!!! AATAGCTTAGAAAATTTTAA+GGG - Chr6:15105343-15105362 MsG0680031147.01.T01:CDS 15.0%
!!! ACAAATGATGATATTTTAAT+GGG - Chr6:15104196-15104215 MsG0680031147.01.T01:intron 15.0%
!!! ACAATATTAAGAGTTTTAAT+TGG + Chr6:15104840-15104859 None:intergenic 15.0%
!!! AGTATTTGAGATTTTATTTT+TGG - Chr6:15103988-15104007 MsG0680031147.01.T01:intron 15.0%
!!! TTTTTTTTACTAAATGCAAA+AGG - Chr6:15104603-15104622 MsG0680031147.01.T01:intron 15.0%
!! AAAGTCTCAAATAATTTAGA+GGG + Chr6:15104813-15104832 None:intergenic 20.0%
!! AAGAAAAAAAACTAAGAGAT+TGG - Chr6:15102876-15102895 MsG0680031147.01.T01:intron 20.0%
!! AAGGAAATTATTACCATAAA+AGG + Chr6:15104334-15104353 None:intergenic 20.0%
!! AATTACTGAGATAATTTATG+TGG + Chr6:15103582-15103601 None:intergenic 20.0%
!! AATTGAAAAGGATTGAAAAT+TGG + Chr6:15101884-15101903 None:intergenic 20.0%
!! ACAATTTCAAGAAATTGAAA+AGG + Chr6:15101896-15101915 None:intergenic 20.0%
!! ATATTCAAGTACCATTAAAA+TGG + Chr6:15104531-15104550 None:intergenic 20.0%
!! ATTAACATGACATCAAAAAA+GGG + Chr6:15102084-15102103 None:intergenic 20.0%
!! CATTCAATACTTAATGTATT+TGG + Chr6:15103017-15103036 None:intergenic 20.0%
!! CCAATATTTAAGTCTATTAA+TGG - Chr6:15101279-15101298 MsG0680031147.01.T01:three_prime_UTR 20.0%
!! CCATTAATAGACTTAAATAT+TGG + Chr6:15101282-15101301 None:intergenic 20.0%
!! GTAATTAAAGTAGAGTTATT+TGG + Chr6:15102831-15102850 None:intergenic 20.0%
!! TAAAGTCTCAAATAATTTAG+AGG + Chr6:15104814-15104833 None:intergenic 20.0%
!! TAGATGAATTTGATGAAAAA+TGG - Chr6:15105137-15105156 MsG0680031147.01.T01:intron 20.0%
!! TATGTATAGTTAGTGTAAAA+TGG - Chr6:15103936-15103955 MsG0680031147.01.T01:intron 20.0%
!! TATTAAGAAATATACCTAAC+AGG + Chr6:15103409-15103428 None:intergenic 20.0%
!! TCTACAAAATCCAAAAAATA+TGG + Chr6:15105839-15105858 None:intergenic 20.0%
!!! AAAAATTGTGACATTTTTAG+TGG - Chr6:15101716-15101735 MsG0680031147.01.T01:CDS 20.0%
!!! AAAGAAATGGTTTGAAATTT+AGG - Chr6:15105542-15105561 MsG0680031147.01.T01:CDS 20.0%
!!! AAATTTCAAACCATTTCTTT+TGG + Chr6:15105542-15105561 None:intergenic 20.0%
!!! ACGTTTTATTAATAGACTTT+AGG + Chr6:15103893-15103912 None:intergenic 20.0%
!!! ACTATTATTGCCATATTTTT+TGG - Chr6:15105826-15105845 MsG0680031147.01.T01:five_prime_UTR 20.0%
!!! ACTGATTTAACAATGTATTA+TGG - Chr6:15105283-15105302 MsG0680031147.01.T01:CDS 20.0%
!!! ATGAAACAATAGTGTTATTA+TGG - Chr6:15104164-15104183 MsG0680031147.01.T01:intron 20.0%
!!! ATGTGTTTTAACCATTTTAA+TGG - Chr6:15104517-15104536 MsG0680031147.01.T01:intron 20.0%
!!! ATTTTTCATCAAATTCATCT+AGG + Chr6:15105138-15105157 None:intergenic 20.0%
!!! TAAGCAAAAAATCACTTTTT+AGG - Chr6:15102953-15102972 MsG0680031147.01.T01:intron 20.0%
!!! TAAGTGTATATTTTATGAGT+TGG + Chr6:15103795-15103814 None:intergenic 20.0%
!!! TAATTTGTTGGAATTTCTTT+AGG + Chr6:15105931-15105950 None:intergenic 20.0%
!!! TATGGTAATAATTTCCTTTT+TGG - Chr6:15104336-15104355 MsG0680031147.01.T01:intron 20.0%
! AAACATTTGTGATGTTTGAT+TGG + Chr6:15103151-15103170 None:intergenic 25.0%
! AAATCTCAAATACTGATATG+CGG + Chr6:15103982-15104001 None:intergenic 25.0%
! AACATTTGTGATGTTTGATT+GGG + Chr6:15103150-15103169 None:intergenic 25.0%
! AATGTATTATGGCTATAGAA+AGG - Chr6:15105294-15105313 MsG0680031147.01.T01:CDS 25.0%
! AATTGTTAGAGGAAAATCTA+TGG - Chr6:15101910-15101929 MsG0680031147.01.T01:CDS 25.0%
! ATACAAAATTTCCCAAAAGA+AGG - Chr6:15105516-15105535 MsG0680031147.01.T01:CDS 25.0%
! ATGTCATGTTAATGTATCTT+TGG - Chr6:15102091-15102110 MsG0680031147.01.T01:CDS 25.0%
! ATTACACAAACAAAACATGT+TGG - Chr6:15101768-15101787 MsG0680031147.01.T01:CDS 25.0%
! CAATTTCTTGAAATTGTTAG+AGG - Chr6:15101899-15101918 MsG0680031147.01.T01:CDS 25.0%
! CATTAACATGACATCAAAAA+AGG + Chr6:15102085-15102104 None:intergenic 25.0%
! GATCATATATAACTCCATAT+TGG + Chr6:15105485-15105504 None:intergenic 25.0%
! TAAAATAAGGTCATGTTAAC+CGG + Chr6:15104387-15104406 None:intergenic 25.0%
! TAGTCATTTGTCAAAAGAAA+TGG - Chr6:15102288-15102307 MsG0680031147.01.T01:intron 25.0%
! TGTATAATGATTGTGTTCAT+TGG - Chr6:15105650-15105669 MsG0680031147.01.T01:CDS 25.0%
! TTACACAAACAAAACATGTT+GGG - Chr6:15101769-15101788 MsG0680031147.01.T01:CDS 25.0%
! TTTGTGTATGATACATCTAT+AGG + Chr6:15104983-15105002 None:intergenic 25.0%
!! AAATTTTGTATTCCTCCAAT+TGG + Chr6:15105507-15105526 None:intergenic 25.0%
!! AATAGTGTATCATTGATTGA+TGG + Chr6:15102129-15102148 None:intergenic 25.0%
!! AGACTATGATACTAATTTGT+TGG + Chr6:15105943-15105962 None:intergenic 25.0%
!! TAGACTTTTACTCTAAATGT+CGG - Chr6:15103285-15103304 MsG0680031147.01.T01:intron 25.0%
!! TAGAGATGAATTTTGTTGAT+TGG - Chr6:15105855-15105874 MsG0680031147.01.T01:five_prime_UTR 25.0%
!! TCAAAAAGAGTTTCCTTTTA+TGG - Chr6:15104318-15104337 MsG0680031147.01.T01:intron 25.0%
!! TGTCATCTCTATTTCTTAAA+AGG + Chr6:15102803-15102822 None:intergenic 25.0%
!! TTTTCTTGGAACTTCATTTT+TGG + Chr6:15101488-15101507 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG + Chr6:15103071-15103052 None:intergenic 25.0%
!!! ATTGATTTGTCTTCTATCAA+GGG - Chr6:15101973-15101992 MsG0680031147.01.T01:CDS 25.0%
!!! CAATTTTTCAAAGATGTTGA+AGG + Chr6:15101704-15101723 None:intergenic 25.0%
!!! CATGTTTTGTTTGTGTAATA+TGG + Chr6:15101767-15101786 None:intergenic 25.0%
!!! TAGACCATTTAACTTTTTCT+AGG - Chr6:15104949-15104968 MsG0680031147.01.T01:intron 25.0%
!!! TTAAAGCATTGTTATATGCA+GGG + Chr6:15104086-15104105 None:intergenic 25.0%
AAAATTGCATGAAGTATGGT+AGG - Chr6:15101807-15101826 MsG0680031147.01.T01:CDS 30.0%
AAACAAAGGATAAGACAAAG+GGG + Chr6:15101600-15101619 None:intergenic 30.0%
AAAGAGAGAAAACAAGAGAA+AGG + Chr6:15101452-15101471 None:intergenic 30.0%
AAATCACTCCATGTATCTAT+AGG + Chr6:15105688-15105707 None:intergenic 30.0%
AAGATGACTATTTCATGAGA+TGG - Chr6:15105002-15105021 MsG0680031147.01.T01:intron 30.0%
ACTCAACAAGAAAATTCAGA+TGG - Chr6:15105082-15105101 MsG0680031147.01.T01:intron 30.0%
ACTGGTTAAGGATACTAAAA+AGG - Chr6:15104244-15104263 MsG0680031147.01.T01:intron 30.0%
ACTGGTTAATGATACCAAAA+AGG + Chr6:15104353-15104372 None:intergenic 30.0%
AGAAATGATGAACCAAACAA+AGG + Chr6:15101614-15101633 None:intergenic 30.0%
AGAAATGGAAGGTTTCATTT+AGG - Chr6:15102303-15102322 MsG0680031147.01.T01:intron 30.0%
ATACCATTCTCAAAATGAGA+TGG + Chr6:15105394-15105413 None:intergenic 30.0%
ATCTTTGGATTGTATTCTAG+TGG + Chr6:15104777-15104796 None:intergenic 30.0%
CAAACAAAGGATAAGACAAA+GGG + Chr6:15101601-15101620 None:intergenic 30.0%
CAAATAATTTAGAGGGTCAT+GGG + Chr6:15104806-15104825 None:intergenic 30.0%
CAACTTGATATTGTTCTTCT+TGG - Chr6:15105903-15105922 MsG0680031147.01.T01:five_prime_UTR 30.0%
CACATTGTAAAGTGAATAAG+TGG - Chr6:15104036-15104055 MsG0680031147.01.T01:intron 30.0%
CATCAAAATTGCATGAAGTA+TGG - Chr6:15101803-15101822 MsG0680031147.01.T01:CDS 30.0%
CATTTGTCAAAAGAAATGGA+AGG - Chr6:15102292-15102311 MsG0680031147.01.T01:intron 30.0%
GAATCAACATTTGAAGAGTT+TGG + Chr6:15101662-15101681 None:intergenic 30.0%
GGAGTTATATATGATCCAAT+TGG - Chr6:15105489-15105508 MsG0680031147.01.T01:CDS 30.0%
GTTATATATGATCCAATTGG+AGG - Chr6:15105492-15105511 MsG0680031147.01.T01:CDS 30.0%
TAAGCCATTTAAGAGTAATG+AGG - Chr6:15105444-15105463 MsG0680031147.01.T01:CDS 30.0%
TCAAATAATTTAGAGGGTCA+TGG + Chr6:15104807-15104826 None:intergenic 30.0%
TCAATCTATAAGCTTGATCA+AGG + Chr6:15102215-15102234 None:intergenic 30.0%
TCCACCTAGAAAAAGTTAAA+TGG + Chr6:15104956-15104975 None:intergenic 30.0%
TTTGACTATGTCATACTCAA+TGG - Chr6:15105178-15105197 MsG0680031147.01.T01:intron 30.0%
! AAATTGAAGAAGTGTAGAAG+TGG + Chr6:15102005-15102024 None:intergenic 30.0%
! AAGGGAAATGAAAGAAGTTT+TGG + Chr6:15101410-15101429 None:intergenic 30.0%
! AGTCTCAACTCATTTGAAAT+AGG + Chr6:15102267-15102286 None:intergenic 30.0%
! ATTCAATTGACTTATCCCAT+AGG + Chr6:15103857-15103876 None:intergenic 30.0%
! ATTGGTAATTCACACTCATT+TGG + Chr6:15101866-15101885 None:intergenic 30.0%
! TAATATGGTCCTTTTGGATT+TGG + Chr6:15101752-15101771 None:intergenic 30.0%
! TACAATGTCACATTTTCTTG+TGG + Chr6:15105634-15105653 None:intergenic 30.0%
! TGCTTTGAATTCTAATTGAG+TGG + Chr6:15101357-15101376 None:intergenic 30.0%
! TTGACTTTAGAAAACCTGTT+AGG - Chr6:15103392-15103411 MsG0680031147.01.T01:intron 30.0%
! TTTGTGTAATATGGTCCTTT+TGG + Chr6:15101758-15101777 None:intergenic 30.0%
! TTTTAATGGGAAATGCTAAC+CGG - Chr6:15104209-15104228 MsG0680031147.01.T01:intron 30.0%
! TTTTGGTCAAGTAACTTTAG+TGG - Chr6:15104005-15104024 MsG0680031147.01.T01:intron 30.0%
!! AAATGTTGATTCAATCGAGA+AGG - Chr6:15101670-15101689 MsG0680031147.01.T01:CDS 30.0%
!! ACCATTTAACTTTTTCTAGG+TGG - Chr6:15104952-15104971 MsG0680031147.01.T01:intron 30.0%
!! ATTTCTTTTGGCCTTCTTTT+GGG + Chr6:15105530-15105549 None:intergenic 30.0%
!! CATTGATTTGTCTTCTATCA+AGG - Chr6:15101972-15101991 MsG0680031147.01.T01:CDS 30.0%
!! CTCATTTTGAGAATGGTATA+TGG - Chr6:15105395-15105414 MsG0680031147.01.T01:CDS 30.0%
!! GTGTATATTTTATGAGTTGG+AGG + Chr6:15103792-15103811 None:intergenic 30.0%
!! GTTAAAGCATTGTTATATGC+AGG + Chr6:15104087-15104106 None:intergenic 30.0%
!! TAAAGCATTGTTATATGCAG+GGG + Chr6:15104085-15104104 None:intergenic 30.0%
!! TGTTGAGTTTTGACAAGAAA+GGG + Chr6:15105070-15105089 None:intergenic 30.0%
!! TTAACTTTTTCTAGGTGGAA+TGG - Chr6:15104957-15104976 MsG0680031147.01.T01:intron 30.0%
!! TTGGAACTTCATTTTTGGAA+GGG + Chr6:15101483-15101502 None:intergenic 30.0%
!! TTGTTGAGTTTTGACAAGAA+AGG + Chr6:15105071-15105090 None:intergenic 30.0%
!! TTTAATAGGTTTTGGTCTAG+TGG - Chr6:15102376-15102395 MsG0680031147.01.T01:intron 30.0%
!!! TGACATTTTTAGTGGTGAAT+GGG - Chr6:15101724-15101743 MsG0680031147.01.T01:CDS 30.0%
AAACAAGAAGTTAAGCCCAA+AGG + Chr6:15104732-15104751 None:intergenic 35.0%
AATGGTATATGGAATCAAGG+TGG - Chr6:15105406-15105425 MsG0680031147.01.T01:CDS 35.0%
ACACAAGTACATTTAGCCTA+TGG - Chr6:15103838-15103857 MsG0680031147.01.T01:intron 35.0%
AGAAATGTTGAAGATGGAGA+GGG - Chr6:15105714-15105733 MsG0680031147.01.T01:exon 35.0%
ATCTGACTATGCACACAAAT+TGG + Chr6:15102780-15102799 None:intergenic 35.0%
ATGGTATATGGAATCAAGGT+GGG - Chr6:15105407-15105426 MsG0680031147.01.T01:CDS 35.0%
ATTGTTATATGCAGGGGTAA+AGG + Chr6:15104079-15104098 None:intergenic 35.0%
ATTTGTGATGTTTGATTGGG+AGG + Chr6:15103147-15103166 None:intergenic 35.0%
CAAAAGAAGGCCAAAAGAAA+TGG - Chr6:15105529-15105548 MsG0680031147.01.T01:CDS 35.0%
CACAAGTACATTTAGCCTAT+GGG - Chr6:15103839-15103858 MsG0680031147.01.T01:intron 35.0%
CATTTAAGAGTAATGAGGCA+AGG - Chr6:15105449-15105468 MsG0680031147.01.T01:CDS 35.0%
CCAAACAAAGGATAAGACAA+AGG + Chr6:15101602-15101621 None:intergenic 35.0%
CCAATGGTATTCTATGAGAA+AGG - Chr6:15105220-15105239 MsG0680031147.01.T01:CDS 35.0%
CCATGGTGAAATTGTAACTT+GGG + Chr6:15105033-15105052 None:intergenic 35.0%
CCTTTCTCATAGAATACCAT+TGG + Chr6:15105223-15105242 None:intergenic 35.0%
CCTTTGTCTTATCCTTTGTT+TGG - Chr6:15101599-15101618 MsG0680031147.01.T01:CDS 35.0%
CTCTTAAATAATACTCCCTC+TGG + Chr6:15103074-15103093 None:intergenic 35.0%
CTGTTATTGTACCTTGTCAT+TGG + Chr6:15104663-15104682 None:intergenic 35.0%
CTTGCCTCATTACTCTTAAA+TGG + Chr6:15105451-15105470 None:intergenic 35.0%
CTTGCTAGAAATGTTGAAGA+TGG - Chr6:15105708-15105727 MsG0680031147.01.T01:exon 35.0%
GACAAATAAACCTCAATCTC+AGG - Chr6:15103201-15103220 MsG0680031147.01.T01:intron 35.0%
GAGAATGGTATATGGAATCA+AGG - Chr6:15105403-15105422 MsG0680031147.01.T01:CDS 35.0%
GCTTCAATGACAATTCATAG+AGG - Chr6:15102150-15102169 MsG0680031147.01.T01:CDS 35.0%
TAATAAACCCCACAAAGTTG+AGG - Chr6:15102585-15102604 MsG0680031147.01.T01:intron 35.0%
TAGAAATGTTGAAGATGGAG+AGG - Chr6:15105713-15105732 MsG0680031147.01.T01:exon 35.0%
TATGCACACAAATTGGAGAT+TGG + Chr6:15102773-15102792 None:intergenic 35.0%
TCAATGTCTAACCAATGACA+AGG - Chr6:15104649-15104668 MsG0680031147.01.T01:intron 35.0%
TGCTTATAAATGTGACCAGA+GGG - Chr6:15103056-15103075 MsG0680031147.01.T01:intron 35.0%
TTAAATGAGTCCTGAGATTG+AGG + Chr6:15103214-15103233 None:intergenic 35.0%
TTGCTTATAAATGTGACCAG+AGG - Chr6:15103055-15103074 MsG0680031147.01.T01:intron 35.0%
TTTCTTTAGTACCTCAGAGA+TGG - Chr6:15103325-15103344 MsG0680031147.01.T01:intron 35.0%
! AGAAAACAAGAGAAAGGTGT+AGG + Chr6:15101446-15101465 None:intergenic 35.0%
! ATGGCTATAGAAAGGCTTTT+AGG - Chr6:15105302-15105321 MsG0680031147.01.T01:CDS 35.0%
! CATAGAGATGCTCTTTTTCT+TGG + Chr6:15101502-15101521 None:intergenic 35.0%
! GAAAACAAGAGAAAGGTGTA+GGG + Chr6:15101445-15101464 None:intergenic 35.0%
! GAGGTACTAAAGAAATCTCT+GGG + Chr6:15103320-15103339 None:intergenic 35.0%
! GGAAAATCTATGGCTTTTGT+TGG - Chr6:15101920-15101939 MsG0680031147.01.T01:CDS 35.0%
! TGAGGTACTAAAGAAATCTC+TGG + Chr6:15103321-15103340 None:intergenic 35.0%
! TTAAGGGTGTGACATTTCTT+AGG - Chr6:15105359-15105378 MsG0680031147.01.T01:CDS 35.0%
!! ACAACTTGAAGCATTGCTAA+TGG - Chr6:15101310-15101329 MsG0680031147.01.T01:three_prime_UTR 35.0%
!! ACTAAGAGATTGGCTTCAAA+TGG - Chr6:15102886-15102905 MsG0680031147.01.T01:intron 35.0%
!! CAAGAAAAAGAGCATCTCTA+TGG - Chr6:15101500-15101519 MsG0680031147.01.T01:CDS 35.0%
!! CATTTCTTTTGGCCTTCTTT+TGG + Chr6:15105531-15105550 None:intergenic 35.0%
!! CTTGGAACTTCATTTTTGGA+AGG + Chr6:15101484-15101503 None:intergenic 35.0%
!!! GTGACATTTTTAGTGGTGAA+TGG - Chr6:15101723-15101742 MsG0680031147.01.T01:CDS 35.0%
AAAGATTGTAGAGACCAGTG+TGG + Chr6:15105114-15105133 None:intergenic 40.0%
AACAGCATGATGCTAACATG+TGG - Chr6:15104678-15104697 MsG0680031147.01.T01:intron 40.0%
AAGATTGTAGAGACCAGTGT+GGG + Chr6:15105113-15105132 None:intergenic 40.0%
AAGGTTAGAAGGGACCAATA+TGG - Chr6:15105468-15105487 MsG0680031147.01.T01:CDS 40.0%
AGATTGGTGGAGTCAAGTTA+TGG + Chr6:15102757-15102776 None:intergenic 40.0%
AGTAATGAGGCAAGGTTAGA+AGG - Chr6:15105457-15105476 MsG0680031147.01.T01:CDS 40.0%
AGTTGGAGCAAAGCTCTATA+TGG + Chr6:15102480-15102499 None:intergenic 40.0%
ATAACCAGATGATCGAGCTT+AGG - Chr6:15104434-15104453 MsG0680031147.01.T01:intron 40.0%
ATCAAATAACGTACTCCCTC+CGG - Chr6:15102921-15102940 MsG0680031147.01.T01:intron 40.0%
ATCAAGGTGGGAATTGTTTG+AGG - Chr6:15105419-15105438 MsG0680031147.01.T01:CDS 40.0%
ATCTGACCGACTAATCCAAT+GGG + Chr6:15102540-15102559 None:intergenic 40.0%
ATGGACTTGCACACTGAAAT+CGG + Chr6:15102461-15102480 None:intergenic 40.0%
ATTTCACCATGGCTGCTTAT+TGG - Chr6:15105041-15105060 MsG0680031147.01.T01:intron 40.0%
CACTTCATGAACTCAGAATC+TGG + Chr6:15101833-15101852 None:intergenic 40.0%
CAGATTCTGAGTTCATGAAG+TGG - Chr6:15101831-15101850 MsG0680031147.01.T01:CDS 40.0%
CCCAAGTTACAATTTCACCA+TGG - Chr6:15105030-15105049 MsG0680031147.01.T01:intron 40.0%
CTTTGCTCCAACTTTAGATG+AGG - Chr6:15102487-15102506 MsG0680031147.01.T01:intron 40.0%
GACTATGTCATACTCAATGG+AGG - Chr6:15105181-15105200 MsG0680031147.01.T01:intron 40.0%
GATGGTCATCCTAGTAGATA+CGG - Chr6:15105601-15105620 MsG0680031147.01.T01:CDS 40.0%
GCAATGTTATTGAGACCAGA+TGG - Chr6:15105583-15105602 MsG0680031147.01.T01:CDS 40.0%
GCCATGGTGAAATTGTAACT+TGG + Chr6:15105034-15105053 None:intergenic 40.0%
GTAATGAGGCAAGGTTAGAA+GGG - Chr6:15105458-15105477 MsG0680031147.01.T01:CDS 40.0%
GTAGGGAAATAGGAGGATAA+GGG + Chr6:15101428-15101447 None:intergenic 40.0%
GTGTCTCTGTGAAGATAACT+CGG + Chr6:15104117-15104136 None:intergenic 40.0%
TATCTACTAGGATGACCATC+TGG + Chr6:15105601-15105620 None:intergenic 40.0%
TATCTGACCGACTAATCCAA+TGG + Chr6:15102541-15102560 None:intergenic 40.0%
TCATACTCAATGGAGGACAT+TGG - Chr6:15105188-15105207 MsG0680031147.01.T01:intron 40.0%
TGCTAAGATTCCACTTCTTG+TGG + Chr6:15103617-15103636 None:intergenic 40.0%
TGCTTATAAATGTGACCGGA+GGG + Chr6:15102939-15102958 None:intergenic 40.0%
TGTAGGGAAATAGGAGGATA+AGG + Chr6:15101429-15101448 None:intergenic 40.0%
TTAGCACGAGATGTAAACTC+TGG - Chr6:15103631-15103650 MsG0680031147.01.T01:intron 40.0%
TTGCTTATAAATGTGACCGG+AGG + Chr6:15102940-15102959 None:intergenic 40.0%
! AAGTGAATAAGTGGAGTGTC+TGG - Chr6:15104045-15104064 MsG0680031147.01.T01:intron 40.0%
! AGAGAAAGGTGTAGGGAAAT+AGG + Chr6:15101438-15101457 None:intergenic 40.0%
! GCAAAAGCCTCATCTAAAGT+TGG + Chr6:15102497-15102516 None:intergenic 40.0%
! GCTTTTGTTGGAGATTCTGT+TGG - Chr6:15101932-15101951 MsG0680031147.01.T01:CDS 40.0%
! TAGATGAGGCTTTTGCAAGT+GGG - Chr6:15102501-15102520 MsG0680031147.01.T01:intron 40.0%
! TTAGATGAGGCTTTTGCAAG+TGG - Chr6:15102500-15102519 MsG0680031147.01.T01:intron 40.0%
! TTGTGTTCATTGGTGTTTGC+CGG - Chr6:15105660-15105679 MsG0680031147.01.T01:CDS 40.0%
!! ACATTGGTTCTACAAGCCAA+TGG - Chr6:15105204-15105223 MsG0680031147.01.T01:intron 40.0%
!! ATAGGTTTTGGTCTAGTGGT+TGG - Chr6:15102380-15102399 MsG0680031147.01.T01:intron 40.0%
!! ATTGGTCCCATTGGATTAGT+CGG - Chr6:15102531-15102550 MsG0680031147.01.T01:intron 40.0%
!! CTTCATTTTTGGAAGGGTTG+TGG + Chr6:15101477-15101496 None:intergenic 40.0%
!! GATGGACTGAAGCACATAAA+TGG + Chr6:15103356-15103375 None:intergenic 40.0%
!! GCACCATCTCATTTTGAGAA+TGG - Chr6:15105388-15105407 MsG0680031147.01.T01:CDS 40.0%
!! TTGGATTAGTCGGTCAGATA+CGG - Chr6:15102541-15102560 MsG0680031147.01.T01:intron 40.0%
!! TTTGGTCTAGTGGTTGGTTT+GGG - Chr6:15102386-15102405 MsG0680031147.01.T01:intron 40.0%
!! TTTTGGTCTAGTGGTTGGTT+TGG - Chr6:15102385-15102404 MsG0680031147.01.T01:intron 40.0%
ATCCAGCCTCAACATTGAGT+AGG - Chr6:15102648-15102667 MsG0680031147.01.T01:intron 45.0%
ATGACCTAAGCTCGATCATC+TGG + Chr6:15104441-15104460 None:intergenic 45.0%
CACATTCCATGTCCCTAACA+AGG - Chr6:15103658-15103677 MsG0680031147.01.T01:intron 45.0%
CTGAGTTCATGAAGTGGAGA+TGG - Chr6:15101837-15101856 MsG0680031147.01.T01:CDS 45.0%
GAATGGGTGCCAAATCCAAA+AGG - Chr6:15101740-15101759 MsG0680031147.01.T01:CDS 45.0%
GACTTGAGACTGTGTTCTTG+TGG + Chr6:15103684-15103703 None:intergenic 45.0%
GCACACAAATTGGAGATTGG+TGG + Chr6:15102770-15102789 None:intergenic 45.0%
GGCAAATGACCGTATCTACT+AGG + Chr6:15105613-15105632 None:intergenic 45.0%
GGTCATGGGTCTTTCATCTT+TGG + Chr6:15104792-15104811 None:intergenic 45.0%
GGTCATTAATGAGCTCTGCT+AGG - Chr6:15104455-15104474 MsG0680031147.01.T01:intron 45.0%
GTCAGACCTACTCAATGTTG+AGG + Chr6:15102657-15102676 None:intergenic 45.0%
! AAATGGACTTGCCATCTCTG+AGG + Chr6:15103339-15103358 None:intergenic 45.0%
! GAAAGGTGTAGGGAAATAGG+AGG + Chr6:15101435-15101454 None:intergenic 45.0%
! TGAGTTGGAGGCTTCAACTT+TGG + Chr6:15103780-15103799 None:intergenic 45.0%
! TGTGTTCATTGGTGTTTGCC+GGG - Chr6:15105661-15105680 MsG0680031147.01.T01:CDS 45.0%
!! AAGAGCACCTCAACTTTGTG+GGG + Chr6:15102595-15102614 None:intergenic 45.0%
!! GAAGAGCACCTCAACTTTGT+GGG + Chr6:15102596-15102615 None:intergenic 45.0%
!! GTGTTCTTGTGGCCTTGTTA+GGG + Chr6:15103673-15103692 None:intergenic 45.0%
!! TAGTGGTTGGTTTGGGATCT+TGG - Chr6:15102393-15102412 MsG0680031147.01.T01:intron 45.0%
!! TGAAGAGCACCTCAACTTTG+TGG + Chr6:15102597-15102616 None:intergenic 45.0%
!! TGTGTTCTTGTGGCCTTGTT+AGG + Chr6:15103674-15103693 None:intergenic 45.0%
!!! AAAAAATGAATTTTATTTAA+TGG + Chr6:15103457-15103476 None:intergenic 5.0%
!!! ATTAAAAGTATTTTAATAAA+GGG + Chr6:15102362-15102381 None:intergenic 5.0%
!!! TATTAAAAGTATTTTAATAA+AGG + Chr6:15102363-15102382 None:intergenic 5.0%
!!! TCAATTTTTATTAAAAAAAA+TGG - Chr6:15102727-15102746 MsG0680031147.01.T01:intron 5.0%
!!! TTTATTAAAATACTTTTAAT+AGG - Chr6:15102362-15102381 MsG0680031147.01.T01:intron 5.0%
CTCCATGTATCTATAGGCCC+CGG + Chr6:15105682-15105701 None:intergenic 50.0%
CTTGGAGTGTGGAGCTTTCA+AGG - Chr6:15102411-15102430 MsG0680031147.01.T01:intron 50.0%
GAAATGCTAACCGGTGCTCT+CGG - Chr6:15104218-15104237 MsG0680031147.01.T01:intron 50.0%
GACCTACTCAATGTTGAGGC+TGG + Chr6:15102653-15102672 None:intergenic 50.0%
GCAAAGCATGCCACAAGAAG+TGG - Chr6:15103604-15103623 MsG0680031147.01.T01:intron 50.0%
GGGCTAAGTCTAAGAGAGAG+AGG - Chr6:15105734-15105753 MsG0680031147.01.T01:five_prime_UTR 50.0%
GGTATCATTAACCAGTGCCC+CGG - Chr6:15104357-15104376 MsG0680031147.01.T01:intron 50.0%
GTATCATTAACCAGTGCCCC+GGG - Chr6:15104358-15104377 MsG0680031147.01.T01:intron 50.0%
TATCATTAACCAGTGCCCCG+GGG - Chr6:15104359-15104378 MsG0680031147.01.T01:intron 50.0%
TGTGGAGCTTTCAAGGTCTC+AGG - Chr6:15102418-15102437 MsG0680031147.01.T01:intron 50.0%
TTGTAGAGACCAGTGTGGGT+TGG + Chr6:15105109-15105128 None:intergenic 50.0%
! ATGAGGCTTTTGCAAGTGGG+AGG - Chr6:15102504-15102523 MsG0680031147.01.T01:intron 50.0%
! GTGTTCATTGGTGTTTGCCG+GGG - Chr6:15105662-15105681 MsG0680031147.01.T01:CDS 50.0%
! TGGTTTGGGATCTTGGAGTG+TGG - Chr6:15102400-15102419 MsG0680031147.01.T01:intron 50.0%
!! TTGTGGCCTTGTTAGGGACA+TGG + Chr6:15103667-15103686 None:intergenic 50.0%
GGGTGTCCAATAAGCAGCCA+TGG + Chr6:15105050-15105069 None:intergenic 55.0%
TCAGATGGACCAACCCACAC+TGG - Chr6:15105097-15105116 MsG0680031147.01.T01:intron 55.0%
TGCCGGGGCCTATAGATACA+TGG - Chr6:15105677-15105696 MsG0680031147.01.T01:CDS 55.0%
TTGCAAGTGGGAGGTGGGAT+TGG - Chr6:15102513-15102532 MsG0680031147.01.T01:intron 55.0%
! AGGCTTTTGCAAGTGGGAGG+TGG - Chr6:15102507-15102526 MsG0680031147.01.T01:intron 55.0%
! GGCTTTTGCAAGTGGGAGGT+GGG - Chr6:15102508-15102527 MsG0680031147.01.T01:intron 55.0%
!! TGCTCTCGGAGCACTGGTTA+AGG - Chr6:15104232-15104251 MsG0680031147.01.T01:intron 55.0%
GGTCATGTTAACCGGTGCCC+CGG + Chr6:15104379-15104398 None:intergenic 60.0%
GTCATGTTAACCGGTGCCCC+GGG + Chr6:15104378-15104397 None:intergenic 60.0%
TCATGTTAACCGGTGCCCCG+GGG + Chr6:15104377-15104396 None:intergenic 60.0%
! AACCAGTGCTCCGAGAGCAC+CGG + Chr6:15104231-15104250 None:intergenic 60.0%
!! GGAGGTGGGATTGGTCCCAT+TGG - Chr6:15102522-15102541 MsG0680031147.01.T01:intron 60.0%
AACCGGTGCTCTCGGAGCAC+TGG - Chr6:15104226-15104245 MsG0680031147.01.T01:intron 65.0%
TAACCAGTGCCCCGGGGCAC+CGG - Chr6:15104365-15104384 MsG0680031147.01.T01:intron 70.0%
TAACCGGTGCCCCGGGGCAC+TGG + Chr6:15104371-15104390 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr6 gene 15101245 15105964 15101245 ID=MsG0680031147.01;Name=MsG0680031147.01
Chr6 mRNA 15101245 15105964 15101245 ID=MsG0680031147.01.T01;Parent=MsG0680031147.01;Name=MsG0680031147.01.T01;_AED=0.40;_eAED=0.40;_QI=246|1|1|1|1|1|2|193|434
Chr6 exon 15101245 15102238 15101245 ID=MsG0680031147.01.T01:exon:10218;Parent=MsG0680031147.01.T01
Chr6 exon 15105215 15105964 15105215 ID=MsG0680031147.01.T01:exon:10217;Parent=MsG0680031147.01.T01
Chr6 five_prime_UTR 15105719 15105964 15105719 ID=MsG0680031147.01.T01:five_prime_utr;Parent=MsG0680031147.01.T01
Chr6 CDS 15105215 15105718 15105215 ID=MsG0680031147.01.T01:cds;Parent=MsG0680031147.01.T01
Chr6 CDS 15101438 15102238 15101438 ID=MsG0680031147.01.T01:cds;Parent=MsG0680031147.01.T01
Chr6 three_prime_UTR 15101245 15101437 15101245 ID=MsG0680031147.01.T01:three_prime_utr;Parent=MsG0680031147.01.T01
Gene Sequence

>MsG0680031147.01.T01

ATGAAGTTCCAAGAAAAAGAGCATCTCTATGGAAACAATAACAAAAAACAAATGTTACCAAAAATAATTTTATTAGCAATCTTTGTCATAATTATAGTTCTTGTCACCCCTTTGTCTTATCCTTTGTTTGGTTCATCATTTCTCTTGATGATGAGCAAGTCTAAAGAACCAAACTCTTCAAATGTTGATTCAATCGAGAAGGAAAATTTACCTTCAACATCTTTGAAAAATTGTGACATTTTTAGTGGTGAATGGGTGCCAAATCCAAAAGGACCATATTACACAAACAAAACATGTTGGGCAATTCATGAGCATCAAAATTGCATGAAGTATGGTAGGCCAGATTCTGAGTTCATGAAGTGGAGATGGAAGCCAAATGAGTGTGAATTACCAATTTTCAATCCTTTTCAATTTCTTGAAATTGTTAGAGGAAAATCTATGGCTTTTGTTGGAGATTCTGTTGGTAGAAATCACATGCAGTCATTGATTTGTCTTCTATCAAGGGTGGAATGGCCTATAGATGTATCATACACAAAAGATGACTATTTCATGAGATGGAAATACCCAAGTTACAATTTCACCATGGCTGCTTATTGGACACCCTTTCTTGTCAAAACTCAACAAGAAAATTCAGATGGACCAACCCACACTGGTCTCTACAATCTTTACCTAGATGAATTTGATGAAAAATGGACATCACAAATTGAAGATTTTGACTATGTCATACTCAATGGAGGACATTGGTTCTACAAGCCAATGGTATTCTATGAGAAAGGAAAAATTGTTGGATGTCATTATTGTCTCTTAGAAAATGTCACTGATTTAACAATGTATTATGGCTATAGAAAGGCTTTTAGGACTGCATTTAGAGCCTTAAATAGCTTAGAAAATTTTAAGGGTGTGACATTTCTTAGGACATTCGCACCATCTCATTTTGAGAATGGTATATGGAATCAAGGTGGGAATTGTTTGAGGACTAAGCCATTTAAGAGTAATGAGGCAAGGTTAGAAGGGACCAATATGGAGTTATATATGATCCAATTGGAGGAATACAAAATTTCCCAAAAGAAGGCCAAAAGAAATGGTTTGAAATTTAGGTTGCTTGATACAACACAAGCAATGTTATTGAGACCAGATGGTCATCCTAGTAGATACGGTCATTTGCCACAAGAAAATGTGACATTGTATAATGATTGTGTTCATTGGTGTTTGCCGGGGCCTATAGATACATGGAGTGATTTCTTGCTAGAAATGTTGAAGATGGAGAGGGCTAAGTCTAAGAGAGAGAGGCGTCAAATAGATTGA
Protein sequence

>MsG0680031147.01.T01

MKFQEKEHLYGNNNKKQMLPKIILLAIFVIIIVLVTPLSYPLFGSSFLLMMSKSKEPNSSNVDSIEKENLPSTSLKNCDIFSGEWVPNPKGPYYTNKTCWAIHEHQNCMKYGRPDSEFMKWRWKPNECELPIFNPFQFLEIVRGKSMAFVGDSVGRNHMQSLICLLSRVEWPIDVSYTKDDYFMRWKYPSYNFTMAAYWTPFLVKTQQENSDGPTHTGLYNLYLDEFDEKWTSQIEDFDYVILNGGHWFYKPMVFYEKGKIVGCHYCLLENVTDLTMYYGYRKAFRTAFRALNSLENFKGVTFLRTFAPSHFENGIWNQGGNCLRTKPFKSNEARLEGTNMELYMIQLEEYKISQKKAKRNGLKFRLLDTTQAMLLRPDGHPSRYGHLPQENVTLYNDCVHWCLPGPIDTWSDFLLEMLKMERAKSKRERRQID*