AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680031475.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031475.01.T01 MTR_6g023835 98.390 559 6 2 1 557 1 558 0.0 1124
MsG0680031475.01.T01 MTR_3g089140 52.688 558 226 12 7 553 2 532 0.0 538
MsG0680031475.01.T01 MTR_4g103600 52.591 521 227 6 35 554 27 528 0.0 525
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031475.01.T01 AT5G14170 70.324 556 140 5 3 556 1 533 0.0 742
MsG0680031475.01.T01 AT3G01890 70.258 427 105 7 127 550 51 458 0.0 587

Find 190 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCCTCTTCAGAAAGTATT+TGG 0.145085 6:+20965370 MsG0680031475.01.T01:CDS
CAGAATCAGGTTGGTGGTTT+AGG 0.152862 6:+20964524 MsG0680031475.01.T01:CDS
CTTGAGCTTGAGCTTGAGCC+TGG 0.177967 6:-20964334 None:intergenic
CTGCAGCTTGTGCATGAGCC+TGG 0.192149 6:-20964445 None:intergenic
GAGAGAGAAAGAGATGAATT+TGG 0.195499 6:-20963765 None:intergenic
CTTGAGCTTGAGCCTGGGCT+TGG 0.215614 6:-20964328 None:intergenic
GTTGGTGGTTTAGGGAATTT+AGG 0.235052 6:+20964533 MsG0680031475.01.T01:CDS
TCTTAGGTATCGTGCGAATT+TGG 0.236171 6:-20964910 None:intergenic
TAGAAAGAAGGTTGATATTC+AGG 0.242285 6:+20964820 MsG0680031475.01.T01:CDS
ATTGAAATGCATAGCATAAA+AGG 0.247724 6:-20966814 None:intergenic
GTTTACCTCGATCTGGATTC+AGG 0.267662 6:-20963970 None:intergenic
AGGAGGCGGGCATTCTTTCT+TGG 0.270814 6:+20965655 MsG0680031475.01.T01:CDS
GGCTCGGCATTTGGCTTCTT+AGG 0.274246 6:-20964926 None:intergenic
AGAATCAGGTTGGTGGTTTA+GGG 0.294649 6:+20964525 MsG0680031475.01.T01:CDS
TCTAGGTATCACGTGCTTCC+TGG 0.306640 6:-20966756 None:intergenic
CCCTCCACCACCTATAGTTC+TGG 0.307931 6:+20965447 MsG0680031475.01.T01:CDS
GTCCACAATGGTGGATTCTT+TGG 0.308108 6:+20967018 MsG0680031475.01.T01:three_prime_UTR
TTGAGCTTGAGCCTGGGCTT+GGG 0.311548 6:-20964327 None:intergenic
AAGGGAGTTGTCTGCACTAT+TGG 0.318030 6:+20965552 MsG0680031475.01.T01:CDS
TTATGATTTAGGTACCCTTT+TGG 0.319407 6:+20964083 MsG0680031475.01.T01:intron
AACAAAGGGGTAAGATGAAT+TGG 0.327582 6:-20963859 None:intergenic
TATAGTTCAAGCACAAAATA+AGG 0.327992 6:+20964409 MsG0680031475.01.T01:CDS
TGATAATTTATCAGATTGTT+AGG 0.331724 6:+20966947 MsG0680031475.01.T01:three_prime_UTR
AGCCTCTTCAGAAAGTATTT+GGG 0.344612 6:+20965371 MsG0680031475.01.T01:CDS
CACGTCGGAGGCTCGGCATT+TGG 0.346531 6:-20964935 None:intergenic
GGTGCTTCTTCATCATCCTT+TGG 0.346778 6:+20964251 MsG0680031475.01.T01:CDS
TGCAGCTTGTGCATGAGCCT+GGG 0.347541 6:-20964444 None:intergenic
TTAATTTGTGTACAATATCT+TGG 0.349286 6:+20967078 MsG0680031475.01.T01:three_prime_UTR
CTTTCCTGCATTGGTTTCTC+AGG 0.350339 6:-20964719 None:intergenic
CTTGAAAACCAGCAGCCATT+TGG 0.355992 6:-20964358 None:intergenic
GAAGCACCAATGCCTTTAGA+AGG 0.357702 6:-20964236 None:intergenic
CAAGAATTATTGCTGCGATA+TGG 0.358007 6:+20965287 MsG0680031475.01.T01:CDS
TGAACTACTCCCGGCTGATC+AGG 0.367241 6:-20965001 None:intergenic
CATATCGCAGCAATAATTCT+TGG 0.368476 6:-20965286 None:intergenic
TTGAAAACCAGCAGCCATTT+GGG 0.374986 6:-20964357 None:intergenic
GGGAAGCTTTAGCTAGGGTT+TGG 0.377730 6:-20963721 None:intergenic
ACAAAGGGGTAAGATGAATT+GGG 0.378377 6:-20963858 None:intergenic
TTCTTCCTCCGTGCAGCAGC+AGG 0.379617 6:-20964686 None:intergenic
TCATCATCCTTTGGTAATGC+TGG 0.383448 6:+20964260 MsG0680031475.01.T01:CDS
TGAAAATTGAGAAGAGAAAG+TGG 0.384973 6:-20963825 None:intergenic
GTTGAGTCTTAATCAGAATC+AGG 0.385261 6:+20964511 MsG0680031475.01.T01:CDS
GGATGAATGATTTCAGAATA+AGG 0.387464 6:-20966793 None:intergenic
CTTTAGCTAGGGTTTGGAAA+AGG 0.394190 6:-20963715 None:intergenic
GAAGATAGTTGGGAGGGTAT+TGG 0.394511 6:+20964964 MsG0680031475.01.T01:CDS
ATAATCAATCATAGACCAAA+AGG 0.404488 6:-20964098 None:intergenic
TTGAGCTTGAGCTTGAGCCT+GGG 0.407071 6:-20964333 None:intergenic
TAATTTGTGTACAATATCTT+GGG 0.408090 6:+20967079 MsG0680031475.01.T01:three_prime_UTR
ATCCAAATCTAATCAACAAA+AGG 0.410687 6:-20964182 None:intergenic
TCGTCGTCGATGTCTACGCC+TGG 0.413216 6:+20964563 MsG0680031475.01.T01:CDS
GTTTGTAGACATAGAATTAG+AGG 0.423500 6:-20964288 None:intergenic
GAAAGTATTTGGGGAAGAAA+AGG 0.423540 6:+20965381 MsG0680031475.01.T01:CDS
CACAAATACGGCATGGAAGA+TGG 0.426654 6:-20966871 None:intergenic
GCAGACAACTCCCTTTGAAT+AGG 0.427857 6:-20965544 None:intergenic
TTAAAGAAAGCCGAGAACTT+TGG 0.432630 6:-20965043 None:intergenic
ATGCATTTCAATATAAATCA+AGG 0.432834 6:+20966825 MsG0680031475.01.T01:three_prime_UTR
GAAAATCCAACCGGCCTCAT+AGG 0.434394 6:-20964620 None:intergenic
AAGTAATGTTTACCTCGATC+TGG 0.435460 6:-20963977 None:intergenic
TTTAGCTAGGGTTTGGAAAA+GGG 0.437818 6:-20963714 None:intergenic
CAAGCTCATTTGCAAGCTCA+AGG 0.438940 6:+20964488 MsG0680031475.01.T01:CDS
GCAGCCACCCTTTCCTGCAT+TGG 0.440696 6:-20964728 None:intergenic
AGCTCAAGCTCAAGCCCAAA+TGG 0.443969 6:+20964343 MsG0680031475.01.T01:CDS
TGTGTATAAAGAGCAGATTC+CGG 0.456024 6:-20964758 None:intergenic
GAATACTGCTCCATAGCATA+TGG 0.456826 6:+20966893 MsG0680031475.01.T01:three_prime_UTR
TCAAAACCTTCTTGAGGAGC+AGG 0.460085 6:-20965139 None:intergenic
ATCTGATGCTCCAGAACTAT+AGG 0.460674 6:-20965457 None:intergenic
ACCGATGTATCCAAAGTTCT+CGG 0.461991 6:+20965033 MsG0680031475.01.T01:CDS
CCACACAATAGTGTTGTTCT+CGG 0.463598 6:-20965101 None:intergenic
AAGGCATTAATAAATTCTAC+TGG 0.468844 6:-20965691 None:intergenic
GGTGAAAGCTTAAACTTCTC+AGG 0.469046 6:-20965223 None:intergenic
GTTTGATTGCAACACAATCA+TGG 0.471016 6:-20967153 None:intergenic
ATGGCTTCTTCTTCAATCAG+TGG 0.472593 6:+20963942 MsG0680031475.01.T01:five_prime_UTR
GCGTTTAGTTCTGAATGGTT+TGG 0.475659 6:-20963665 None:intergenic
CTATCGGGAAATAGTCCAGC+TGG 0.478886 6:+20965484 MsG0680031475.01.T01:CDS
TGCTCAAAGCTTACCATGGT+TGG 0.480015 6:-20965801 None:intergenic
TGGCGTTGACCCTGATCAGC+CGG 0.481582 6:+20964991 MsG0680031475.01.T01:CDS
CGTGGACTCTGAAGATAGTT+GGG 0.481652 6:+20964954 MsG0680031475.01.T01:CDS
CGATCACCTGCTCCTCAAGA+AGG 0.484816 6:+20965133 MsG0680031475.01.T01:CDS
TGCTGCACTTTCTAGAAAGA+AGG 0.485884 6:+20964808 MsG0680031475.01.T01:CDS
AACTCCCTTTGAATAGGAAA+AGG 0.491119 6:-20965538 None:intergenic
TAAGCTTTCACCAGCATTGA+CGG 0.492158 6:+20965234 MsG0680031475.01.T01:CDS
CTGAGAAACCAATGCAGGAA+AGG 0.496111 6:+20964720 MsG0680031475.01.T01:CDS
ACGTGGACTCTGAAGATAGT+TGG 0.500504 6:+20964953 MsG0680031475.01.T01:CDS
GGAGCATCACTTCCTGCAGC+GGG 0.501664 6:-20966735 None:intergenic
AATAACAACAACCCTTCTAA+AGG 0.502773 6:+20964224 MsG0680031475.01.T01:CDS
AGGGCAGTTTCCACAGTCAC+AGG 0.503395 6:+20964379 MsG0680031475.01.T01:CDS
AGGAAGATGAAGATGAAGAT+GGG 0.503430 6:-20963742 None:intergenic
GAGGAAGATGAAGATGAAGA+TGG 0.503444 6:-20963743 None:intergenic
TCAGATTGTTAGGAGAAAGA+TGG 0.506419 6:+20966957 MsG0680031475.01.T01:three_prime_UTR
CAGAGTCCACGTCGGAGGCT+CGG 0.506975 6:-20964942 None:intergenic
AGAGAAAGAGATGAATTTGG+AGG 0.507559 6:-20963762 None:intergenic
TTTCTCGCCGTTGAGACCGA+TGG 0.507861 6:+20964655 MsG0680031475.01.T01:CDS
CCTTGATTGAATCTCAAAGC+AGG 0.511145 6:+20965710 MsG0680031475.01.T01:CDS
TTCTGAGGCGAAAATCCAAC+CGG 0.514583 6:-20964629 None:intergenic
AGGGATCTGAAAGCTGCAGC+TGG 0.516281 6:+20965730 MsG0680031475.01.T01:CDS
TGAGAAACCAATGCAGGAAA+GGG 0.518820 6:+20964721 MsG0680031475.01.T01:CDS
TCCAAATCTAATCAACAAAA+GGG 0.518852 6:-20964181 None:intergenic
CTCGCAGGATCCATATGCTA+TGG 0.518914 6:-20966903 None:intergenic
TGGAGCAGTATTCACAAATA+CGG 0.519081 6:-20966883 None:intergenic
GAAGAGAAAGTGGTGAATTG+AGG 0.519565 6:-20963815 None:intergenic
GTTGGGAGGGTATTGGAAGA+TGG 0.520571 6:+20964971 MsG0680031475.01.T01:CDS
CAACTAGTTGCAGTGCTCGC+AGG 0.522555 6:-20966918 None:intergenic
GTCCTTTGAAACCACCTATG+AGG 0.522585 6:+20964606 MsG0680031475.01.T01:CDS
TCGTAACAAGCACTCCCAGC+TGG 0.524770 6:-20965499 None:intergenic
TTGAATCGCAAACCCGCTGC+AGG 0.527757 6:+20966723 MsG0680031475.01.T01:CDS
GGAGCATCAGATCAAACTAT+CGG 0.529729 6:+20965468 MsG0680031475.01.T01:CDS
GATGAAGAGAGAGAAACAAA+GGG 0.530469 6:-20963873 None:intergenic
GCAAGAACTTCCGTCAATGC+TGG 0.532598 6:-20965244 None:intergenic
AAACCACCTATGAGGCCGGT+TGG 0.533220 6:+20964614 MsG0680031475.01.T01:CDS
TTTGTGCTTGAACTATAGCA+TGG 0.533313 6:-20964403 None:intergenic
TTAGCTAGGGTTTGGAAAAG+GGG 0.533624 6:-20963713 None:intergenic
GCTCAAGCCCAAATGGCTGC+TGG 0.535101 6:+20964350 MsG0680031475.01.T01:CDS
TCCAGAACTATAGGTGGTGG+AGG 0.535658 6:-20965448 None:intergenic
AAGATGGGGAAGCTTTAGCT+AGG 0.535700 6:-20963727 None:intergenic
TCCACGAGCATCGTAGGAGG+CGG 0.535807 6:+20965641 MsG0680031475.01.T01:CDS
TCCCCAAATACTTTCTGAAG+AGG 0.537915 6:-20965373 None:intergenic
CTTAATCAGAATCAGGTTGG+TGG 0.541176 6:+20964518 MsG0680031475.01.T01:CDS
TGCTCCAGAACTATAGGTGG+TGG 0.541684 6:-20965451 None:intergenic
AGGAGCACTAGGACTTCTCT+AGG 0.542772 6:-20966773 None:intergenic
TCAAGCACAAAATAAGGCTC+AGG 0.542804 6:+20964415 MsG0680031475.01.T01:CDS
ATAGCATGGGCCTGTGACTG+TGG 0.543201 6:-20964389 None:intergenic
GTGAAGCGTTTAGTTCTGAA+TGG 0.546492 6:-20963670 None:intergenic
TGATGAAGAGAGAGAAACAA+AGG 0.546742 6:-20963874 None:intergenic
TAAGGCTCAGGCTCAAGCCC+AGG 0.547812 6:+20964427 MsG0680031475.01.T01:CDS
TTTGAAACCACCTATGAGGC+CGG 0.549023 6:+20964610 MsG0680031475.01.T01:CDS
GGCGTTGACCCTGATCAGCC+GGG 0.550072 6:+20964992 MsG0680031475.01.T01:CDS
GAGCATCAGATCAAACTATC+GGG 0.554086 6:+20965469 MsG0680031475.01.T01:CDS
CGTCGTCGATGTCTACGCCT+GGG 0.555750 6:+20964564 MsG0680031475.01.T01:CDS
AACAACCCTTCTAAAGGCAT+TGG 0.556425 6:+20964230 MsG0680031475.01.T01:CDS
CACACAATAGTGTTGTTCTC+GGG 0.556965 6:-20965100 None:intergenic
CCTGCTTTGAGATTCAATCA+AGG 0.560426 6:-20965710 None:intergenic
TGGAGCATCACTTCCTGCAG+CGG 0.562803 6:-20966736 None:intergenic
CAAAGGGGTAAGATGAATTG+GGG 0.563040 6:-20963857 None:intergenic
CCACGAGCATCGTAGGAGGC+GGG 0.563419 6:+20965642 MsG0680031475.01.T01:CDS
TTGTGCTTGAACTATAGCAT+GGG 0.564247 6:-20964402 None:intergenic
GAACTACTCCCGGCTGATCA+GGG 0.569681 6:-20965000 None:intergenic
TATGGCACTATGTGAAGGCT+AGG 0.572101 6:+20965305 MsG0680031475.01.T01:CDS
TCGATGTCTACGCCTGGGAG+CGG 0.572497 6:+20964569 MsG0680031475.01.T01:CDS
TTCACTTCAAAACCTTCTTG+AGG 0.576166 6:-20965145 None:intergenic
AAGCTCATTTGCAAGCTCAA+GGG 0.576715 6:+20964489 MsG0680031475.01.T01:CDS
GGAAGATGAAGATGAAGATG+GGG 0.578296 6:-20963741 None:intergenic
CCCGCCTCCTACGATGCTCG+TGG 0.579778 6:-20965642 None:intergenic
AACTAACGCCTGCTGCTGCA+CGG 0.579865 6:+20964678 MsG0680031475.01.T01:CDS
GCAGCAGGCGTTAGTTCCAT+CGG 0.581426 6:-20964671 None:intergenic
ATTTCAGAATAAGGAGCACT+AGG 0.581923 6:-20966784 None:intergenic
TCTCGAGTTTGAGTCTCGTG+TGG 0.582039 6:+20964784 MsG0680031475.01.T01:CDS
TGCATTTCAATATAAATCAA+GGG 0.583096 6:+20966826 MsG0680031475.01.T01:three_prime_UTR
TTGTTCTCGGGATATAGCCT+CGG 0.583394 6:-20965088 None:intergenic
TAATCAATCATAGACCAAAA+GGG 0.587342 6:-20964097 None:intergenic
GCTGCAGGAAGTGATGCTCC+AGG 0.587547 6:+20966738 MsG0680031475.01.T01:CDS
TTTGTAGACATAGAATTAGA+GGG 0.588228 6:-20964287 None:intergenic
GCCTCTTCAGAAAGTATTTG+GGG 0.589482 6:+20965372 MsG0680031475.01.T01:CDS
AGTCTTAATCAGAATCAGGT+TGG 0.591722 6:+20964515 MsG0680031475.01.T01:CDS
GACGACTTCTGAACTACTCC+CGG 0.592418 6:-20965010 None:intergenic
GACTCTGAAGATAGTTGGGA+GGG 0.595717 6:+20964958 MsG0680031475.01.T01:CDS
GGCCTCATAGGTGGTTTCAA+AGG 0.597547 6:-20964608 None:intergenic
TAATCATTACTTTGGATCCG+AGG 0.599509 6:+20965071 MsG0680031475.01.T01:CDS
AAATCCACGAGCATCGTAGG+AGG 0.600190 6:+20965638 MsG0680031475.01.T01:CDS
GCTTCCTGAGAAACCAATGC+AGG 0.601644 6:+20964715 MsG0680031475.01.T01:CDS
CCGAGAACAACACTATTGTG+TGG 0.601969 6:+20965101 MsG0680031475.01.T01:CDS
GCCGAGAACTTTGGATACAT+CGG 0.603059 6:-20965034 None:intergenic
ACATGTGATGAAGCGATATG+TGG 0.611068 6:+20965604 MsG0680031475.01.T01:CDS
AAGCACCAATGCCTTTAGAA+GGG 0.611789 6:-20964235 None:intergenic
CGTTTCGCACTACCGCTCCC+AGG 0.612556 6:-20964581 None:intergenic
AATCCAACCGGCCTCATAGG+TGG 0.616407 6:-20964617 None:intergenic
CAGTATTCACAAATACGGCA+TGG 0.619475 6:-20966878 None:intergenic
CGAGAACAACACTATTGTGT+GGG 0.622889 6:+20965102 MsG0680031475.01.T01:CDS
AGATGGGGAAGCTTTAGCTA+GGG 0.623382 6:-20963726 None:intergenic
CTTGATTGAATCTCAAAGCA+GGG 0.625702 6:+20965711 MsG0680031475.01.T01:CDS
GTTGTAGTAGTCCACAATGG+TGG 0.625899 6:+20967009 MsG0680031475.01.T01:three_prime_UTR
GAGTGCTTGTTACGATGCAA+TGG 0.627382 6:+20965507 MsG0680031475.01.T01:CDS
GGTGGTGGAGGGAACAAATG+TGG 0.627777 6:-20965436 None:intergenic
AACCAAAGAATCCACCATTG+TGG 0.631777 6:-20967020 None:intergenic
ATCTTCAGAGTCCACGTCGG+AGG 0.634474 6:-20964947 None:intergenic
GTTAGTTCCATCGGTCTCAA+CGG 0.635089 6:-20964662 None:intergenic
TATCGGGAAATAGTCCAGCT+GGG 0.641484 6:+20965485 MsG0680031475.01.T01:CDS
GAAACCAATGCAGGAAAGGG+TGG 0.642837 6:+20964724 MsG0680031475.01.T01:CDS
TGCGATATGGCACTATGTGA+AGG 0.645164 6:+20965300 MsG0680031475.01.T01:CDS
ATGAAGAGAGAGAAACAAAG+GGG 0.652210 6:-20963872 None:intergenic
CCAGAACTATAGGTGGTGGA+GGG 0.655511 6:-20965447 None:intergenic
GGACTCTGAAGATAGTTGGG+AGG 0.655821 6:+20964957 MsG0680031475.01.T01:CDS
TGATGCTCCAGAACTATAGG+TGG 0.665812 6:-20965454 None:intergenic
GGGCATTCCAGCATTACCAA+AGG 0.666091 6:-20964267 None:intergenic
GGGAGCGGTAGTGCGAAACG+TGG 0.679453 6:+20964584 MsG0680031475.01.T01:CDS
AACGGCGAGAAATTATTCTG+AGG 0.687649 6:-20964644 None:intergenic
ATCTTCCTGAATCCAGATCG+AGG 0.697371 6:+20963965 MsG0680031475.01.T01:five_prime_UTR
CAAATGCCGAGCCTCCGACG+TGG 0.704392 6:+20964936 MsG0680031475.01.T01:CDS
TCTTGTTTGTGACACAACAC+AGG 0.710453 6:+20967105 MsG0680031475.01.T01:three_prime_UTR
TAACGCCTGCTGCTGCACGG+AGG 0.741030 6:+20964681 MsG0680031475.01.T01:CDS
GTTGTTGTAGTAGTCCACAA+TGG 0.744781 6:+20967006 MsG0680031475.01.T01:three_prime_UTR
ACTATCTTCAGAGTCCACGT+CGG 0.774690 6:-20964950 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAATAAAACAATGG+AGG - Chr6:20965848-20965867 None:intergenic 15.0%
!! TAAAAAAGTAATCATTACTT+TGG + Chr6:20965063-20965082 MsG0680031475.01.T01:CDS 15.0%
!! AACTTAGTATATATGTTAGT+TGG + Chr6:20966267-20966286 MsG0680031475.01.T01:intron 20.0%
!! ATGAAAAATTTGTATTAGGA+AGG + Chr6:20967054-20967073 MsG0680031475.01.T01:three_prime_UTR 20.0%
!! ATGCATTTCAATATAAATCA+AGG + Chr6:20966825-20966844 MsG0680031475.01.T01:three_prime_UTR 20.0%
!! CATCATGAAAAATTTGTATT+AGG + Chr6:20967050-20967069 MsG0680031475.01.T01:three_prime_UTR 20.0%
!! TAAAAATTCTGTTACCAAAA+TGG - Chr6:20964037-20964056 None:intergenic 20.0%
!! TGATAATTTATCAGATTGTT+AGG + Chr6:20966947-20966966 MsG0680031475.01.T01:three_prime_UTR 20.0%
!! TGCATTTCAATATAAATCAA+GGG + Chr6:20966826-20966845 MsG0680031475.01.T01:three_prime_UTR 20.0%
!! TGTCAAAAAGTTGTTAAAAA+AGG - Chr6:20966004-20966023 None:intergenic 20.0%
!!! AAAGTTAAGATTTTTTCATC+TGG + Chr6:20964128-20964147 MsG0680031475.01.T01:five_prime_UTR 20.0%
!!! AAGTTAAGATTTTTTCATCT+GGG + Chr6:20964129-20964148 MsG0680031475.01.T01:five_prime_UTR 20.0%
!!! AATTAATTTGCAATCAAAGA+TGG - Chr6:20965906-20965925 None:intergenic 20.0%
!!! ACTTGAATTTGTTATGATTT+AGG + Chr6:20964072-20964091 MsG0680031475.01.T01:intron 20.0%
!!! TAATTTGTGTACAATATCTT+GGG + Chr6:20967079-20967098 MsG0680031475.01.T01:three_prime_UTR 20.0%
!!! TACAACTTTTATGACAATTT+TGG - Chr6:20966115-20966134 None:intergenic 20.0%
!!! TATTATTTTTGACCAATCAA+AGG + Chr6:20966081-20966100 MsG0680031475.01.T01:intron 20.0%
!!! TCTGTATTTTCTATGTTTTA+TGG + Chr6:20966598-20966617 MsG0680031475.01.T01:intron 20.0%
!!! TCTTGAAGATTTGAATTTTA+GGG + Chr6:20964152-20964171 MsG0680031475.01.T01:five_prime_UTR 20.0%
!!! TTAATTTGTGTACAATATCT+TGG + Chr6:20967078-20967097 MsG0680031475.01.T01:three_prime_UTR 20.0%
!!! TTCAAATGTTTTAAAATGCA+TGG + Chr6:20966525-20966544 MsG0680031475.01.T01:intron 20.0%
! AACTAAGACAATATATGGAA+GGG - Chr6:20966229-20966248 None:intergenic 25.0%
! AGCATAATTTGAACAAATCA+TGG + Chr6:20966366-20966385 MsG0680031475.01.T01:intron 25.0%
! ATAATCAATCATAGACCAAA+AGG - Chr6:20964101-20964120 None:intergenic 25.0%
! ATATATTGTCTTAGTTGTTG+AGG + Chr6:20966233-20966252 MsG0680031475.01.T01:intron 25.0%
! ATCCAAATCTAATCAACAAA+AGG - Chr6:20964185-20964204 None:intergenic 25.0%
! ATTGAAATGCATAGCATAAA+AGG - Chr6:20966817-20966836 None:intergenic 25.0%
! TAATCAATCATAGACCAAAA+GGG - Chr6:20964100-20964119 None:intergenic 25.0%
! TATAGTTCAAGCACAAAATA+AGG + Chr6:20964409-20964428 MsG0680031475.01.T01:CDS 25.0%
! TCAACAACTAAGACAATATA+TGG - Chr6:20966234-20966253 None:intergenic 25.0%
! TCCAAATCTAATCAACAAAA+GGG - Chr6:20964184-20964203 None:intergenic 25.0%
! TTATTCTGCTATATGCTATT+TGG + Chr6:20966389-20966408 MsG0680031475.01.T01:intron 25.0%
! TTTGTAGACATAGAATTAGA+GGG - Chr6:20964290-20964309 None:intergenic 25.0%
!! AAGGCATTAATAAATTCTAC+TGG - Chr6:20965694-20965713 None:intergenic 25.0%
!! ATATTCCTTTTCCTATTCAA+AGG + Chr6:20965533-20965552 MsG0680031475.01.T01:CDS 25.0%
!! GTCTTGAAGATTTGAATTTT+AGG + Chr6:20964151-20964170 MsG0680031475.01.T01:five_prime_UTR 25.0%
!! TATTCCTTTTCCTATTCAAA+GGG + Chr6:20965534-20965553 MsG0680031475.01.T01:CDS 25.0%
!!! GATTCTAGTCTTATTTTAAC+TGG - Chr6:20966572-20966591 None:intergenic 25.0%
!!! GATTTTTTTTGTGTGAATCA+GGG - Chr6:20963905-20963924 None:intergenic 25.0%
!!! TGATTTTTTTTGTGTGAATC+AGG - Chr6:20963906-20963925 None:intergenic 25.0%
AATAACAACAACCCTTCTAA+AGG + Chr6:20964224-20964243 MsG0680031475.01.T01:CDS 30.0%
AATGAAATCCTATCATACCA+TGG - Chr6:20966506-20966525 None:intergenic 30.0%
ACTAAGACAATATATGGAAG+GGG - Chr6:20966228-20966247 None:intergenic 30.0%
ATATATGTTAGTTGGACTGT+TGG + Chr6:20966275-20966294 MsG0680031475.01.T01:intron 30.0%
CAACTAAGACAATATATGGA+AGG - Chr6:20966230-20966249 None:intergenic 30.0%
GATCACAGTGAAAAAAAGAA+GGG - Chr6:20965351-20965370 None:intergenic 30.0%
GGATGAATGATTTCAGAATA+AGG - Chr6:20966796-20966815 None:intergenic 30.0%
GTGATATTTGTACAACTCTT+TGG - Chr6:20966138-20966157 None:intergenic 30.0%
GTTTGTAGACATAGAATTAG+AGG - Chr6:20964291-20964310 None:intergenic 30.0%
TCAAAGATGGTAGCAAATAA+AGG - Chr6:20965893-20965912 None:intergenic 30.0%
TGAAAATTGAGAAGAGAAAG+TGG - Chr6:20963828-20963847 None:intergenic 30.0%
TGATCACAGTGAAAAAAAGA+AGG - Chr6:20965352-20965371 None:intergenic 30.0%
! GATTTTCGTTCTTTCCATTT+TGG + Chr6:20964020-20964039 MsG0680031475.01.T01:intron 30.0%
! TCACATTTTTCACTTCTTCA+TGG + Chr6:20963923-20963942 MsG0680031475.01.T01:five_prime_UTR 30.0%
! TTATGATTTAGGTACCCTTT+TGG + Chr6:20964083-20964102 MsG0680031475.01.T01:intron 30.0%
!! ACCCTTTTGTTGATTAGATT+TGG + Chr6:20964180-20964199 MsG0680031475.01.T01:five_prime_UTR 30.0%
!! CACAAAGTATTGGCAAATAT+CGG + Chr6:20966412-20966431 MsG0680031475.01.T01:intron 30.0%
!! TAGAAAGAAGGTTGATATTC+AGG + Chr6:20964820-20964839 MsG0680031475.01.T01:CDS 30.0%
!!! TGAATGGTTTGGTTTTGAAA+CGG - Chr6:20963657-20963676 None:intergenic 30.0%
!!! TTCTTTTTTGAAATGGGGAA+GGG - Chr6:20966203-20966222 None:intergenic 30.0%
AACAAAGGGGTAAGATGAAT+TGG - Chr6:20963862-20963881 None:intergenic 35.0%
AACTCCCTTTGAATAGGAAA+AGG - Chr6:20965541-20965560 None:intergenic 35.0%
AAGTAATGTTTACCTCGATC+TGG - Chr6:20963980-20963999 None:intergenic 35.0%
ACAAAGGGGTAAGATGAATT+GGG - Chr6:20963861-20963880 None:intergenic 35.0%
AGAGAAAGAGATGAATTTGG+AGG - Chr6:20963765-20963784 None:intergenic 35.0%
AGGAAGATGAAGATGAAGAT+GGG - Chr6:20963745-20963764 None:intergenic 35.0%
AGTCTTAATCAGAATCAGGT+TGG + Chr6:20964515-20964534 MsG0680031475.01.T01:CDS 35.0%
ATGAAGAGAGAGAAACAAAG+GGG - Chr6:20963875-20963894 None:intergenic 35.0%
ATTGTTTGACAACATGAGCA+GGG + Chr6:20966677-20966696 MsG0680031475.01.T01:intron 35.0%
CAAGAATTATTGCTGCGATA+TGG + Chr6:20965287-20965306 MsG0680031475.01.T01:CDS 35.0%
CATATCGCAGCAATAATTCT+TGG - Chr6:20965289-20965308 None:intergenic 35.0%
CTTGATTGAATCTCAAAGCA+GGG + Chr6:20965711-20965730 MsG0680031475.01.T01:CDS 35.0%
GAAAAAAAGAAGGGTCGTTA+GGG - Chr6:20965342-20965361 None:intergenic 35.0%
GAGAGAGAAAGAGATGAATT+TGG - Chr6:20963768-20963787 None:intergenic 35.0%
GAGTCAATCACAATCAATTC+CGG - Chr6:20965941-20965960 None:intergenic 35.0%
GATGAAGAGAGAGAAACAAA+GGG - Chr6:20963876-20963895 None:intergenic 35.0%
GTTGAGTCTTAATCAGAATC+AGG + Chr6:20964511-20964530 MsG0680031475.01.T01:CDS 35.0%
GTTTGATTGCAACACAATCA+TGG - Chr6:20967156-20967175 None:intergenic 35.0%
TAATCATTACTTTGGATCCG+AGG + Chr6:20965071-20965090 MsG0680031475.01.T01:CDS 35.0%
TATCATACCATGGTCATACA+GGG - Chr6:20966496-20966515 None:intergenic 35.0%
TATTGTTTGACAACATGAGC+AGG + Chr6:20966676-20966695 MsG0680031475.01.T01:intron 35.0%
TCAGATTGTTAGGAGAAAGA+TGG + Chr6:20966957-20966976 MsG0680031475.01.T01:three_prime_UTR 35.0%
TGAAAAAAAGAAGGGTCGTT+AGG - Chr6:20965343-20965362 None:intergenic 35.0%
TGATGAAGAGAGAGAAACAA+AGG - Chr6:20963877-20963896 None:intergenic 35.0%
TGGAGCAGTATTCACAAATA+CGG - Chr6:20966886-20966905 None:intergenic 35.0%
TGTGTATAAAGAGCAGATTC+CGG - Chr6:20964761-20964780 None:intergenic 35.0%
TTAAAGAAAGCCGAGAACTT+TGG - Chr6:20965046-20965065 None:intergenic 35.0%
TTCACTTCAAAACCTTCTTG+AGG - Chr6:20965148-20965167 None:intergenic 35.0%
TTGCAGGTCTTAGAAAATGA+TGG - Chr6:20966466-20966485 None:intergenic 35.0%
TTGTGCTTGAACTATAGCAT+GGG - Chr6:20964405-20964424 None:intergenic 35.0%
TTTAGCTAGGGTTTGGAAAA+GGG - Chr6:20963717-20963736 None:intergenic 35.0%
TTTGTGCTTGAACTATAGCA+TGG - Chr6:20964406-20964425 None:intergenic 35.0%
! AGAGTTTTCTGAATACAAGG+CGG - Chr6:20964860-20964879 None:intergenic 35.0%
! CGAAGAGTTTTCTGAATACA+AGG - Chr6:20964863-20964882 None:intergenic 35.0%
! GAAAGGGGATAAAGAGTTTT+CGG + Chr6:20965171-20965190 MsG0680031475.01.T01:CDS 35.0%
! TGCTATTTGGCACAAAGTAT+TGG + Chr6:20966402-20966421 MsG0680031475.01.T01:intron 35.0%
! TTTTTGTGTGAATCAGGGTT+TGG - Chr6:20963900-20963919 None:intergenic 35.0%
!! AGCCTCTTCAGAAAGTATTT+GGG + Chr6:20965371-20965390 MsG0680031475.01.T01:CDS 35.0%
!! ATTTCAGAATAAGGAGCACT+AGG - Chr6:20966787-20966806 None:intergenic 35.0%
!! GAAAGTATTTGGGGAAGAAA+AGG + Chr6:20965381-20965400 MsG0680031475.01.T01:CDS 35.0%
!! TTGGTTTTCTCTCCTTTGAT+TGG - Chr6:20966096-20966115 None:intergenic 35.0%
!!! AAGAAGGTTTTGAAGTGAAG+AGG + Chr6:20965149-20965168 MsG0680031475.01.T01:CDS 35.0%
!!! AGGGGACTTCTTTTTTGAAA+TGG - Chr6:20966210-20966229 None:intergenic 35.0%
!!! CAGATTTTTTCAACCAACCA+TGG + Chr6:20965788-20965807 MsG0680031475.01.T01:CDS 35.0%
!!! CTTCTTTTTTGAAATGGGGA+AGG - Chr6:20966204-20966223 None:intergenic 35.0%
!!! GGGACTTCTTTTTTGAAATG+GGG - Chr6:20966208-20966227 None:intergenic 35.0%
!!! GGGGACTTCTTTTTTGAAAT+GGG - Chr6:20966209-20966228 None:intergenic 35.0%
!!! GTTTTGAAGTGAAGAGGAAA+GGG + Chr6:20965155-20965174 MsG0680031475.01.T01:CDS 35.0%
!!! TTTTGAAGTGAAGAGGAAAG+GGG + Chr6:20965156-20965175 MsG0680031475.01.T01:CDS 35.0%
AACCAAAGAATCCACCATTG+TGG - Chr6:20967023-20967042 None:intergenic 40.0%
AACGGCGAGAAATTATTCTG+AGG - Chr6:20964647-20964666 None:intergenic 40.0%
AAGCTCATTTGCAAGCTCAA+GGG + Chr6:20964489-20964508 MsG0680031475.01.T01:CDS 40.0%
ACATGTGATGAAGCGATATG+TGG + Chr6:20965604-20965623 MsG0680031475.01.T01:CDS 40.0%
ACCGATGTATCCAAAGTTCT+CGG + Chr6:20965033-20965052 MsG0680031475.01.T01:CDS 40.0%
ATAGTGCTCAAAGCTTACCA+TGG - Chr6:20965808-20965827 None:intergenic 40.0%
ATCTGATGCTCCAGAACTAT+AGG - Chr6:20965460-20965479 None:intergenic 40.0%
ATGGCTTCTTCTTCAATCAG+TGG + Chr6:20963942-20963961 MsG0680031475.01.T01:five_prime_UTR 40.0%
ATTAATTCACCATCGTCTGC+CGG + Chr6:20965919-20965938 MsG0680031475.01.T01:intron 40.0%
CAAAGGGGTAAGATGAATTG+GGG - Chr6:20963860-20963879 None:intergenic 40.0%
CAGTATTCACAAATACGGCA+TGG - Chr6:20966881-20966900 None:intergenic 40.0%
CCTTGATTGAATCTCAAAGC+AGG + Chr6:20965710-20965729 MsG0680031475.01.T01:CDS 40.0%
CGAGAACAACACTATTGTGT+GGG + Chr6:20965102-20965121 MsG0680031475.01.T01:CDS 40.0%
CTATCATACCATGGTCATAC+AGG - Chr6:20966497-20966516 None:intergenic 40.0%
CTGTATGACCATGGTATGAT+AGG + Chr6:20966495-20966514 MsG0680031475.01.T01:intron 40.0%
CTTGGGCTTGTGAAAAAACA+GGG - Chr6:20964313-20964332 None:intergenic 40.0%
CTTTAGCTAGGGTTTGGAAA+AGG - Chr6:20963718-20963737 None:intergenic 40.0%
GAAGAGAAAGTGGTGAATTG+AGG - Chr6:20963818-20963837 None:intergenic 40.0%
GAATACTGCTCCATAGCATA+TGG + Chr6:20966893-20966912 MsG0680031475.01.T01:three_prime_UTR 40.0%
GAGCATCAGATCAAACTATC+GGG + Chr6:20965469-20965488 MsG0680031475.01.T01:CDS 40.0%
GAGGAAGATGAAGATGAAGA+TGG - Chr6:20963746-20963765 None:intergenic 40.0%
GCGCCATATGAGATGAAAAT+AGG - Chr6:20966310-20966329 None:intergenic 40.0%
GGAAGATGAAGATGAAGATG+GGG - Chr6:20963744-20963763 None:intergenic 40.0%
GGTGAAAGCTTAAACTTCTC+AGG - Chr6:20965226-20965245 None:intergenic 40.0%
GTTGTTGTAGTAGTCCACAA+TGG + Chr6:20967006-20967025 MsG0680031475.01.T01:three_prime_UTR 40.0%
TCAAGCACAAAATAAGGCTC+AGG + Chr6:20964415-20964434 MsG0680031475.01.T01:CDS 40.0%
TGAGAAACCAATGCAGGAAA+GGG + Chr6:20964721-20964740 MsG0680031475.01.T01:CDS 40.0%
TTAGCTAGGGTTTGGAAAAG+GGG - Chr6:20963716-20963735 None:intergenic 40.0%
TTGAAAACCAGCAGCCATTT+GGG - Chr6:20964360-20964379 None:intergenic 40.0%
! AACAACCCTTCTAAAGGCAT+TGG + Chr6:20964230-20964249 MsG0680031475.01.T01:CDS 40.0%
! AAGCACCAATGCCTTTAGAA+GGG - Chr6:20964238-20964257 None:intergenic 40.0%
! CACACAATAGTGTTGTTCTC+GGG - Chr6:20965103-20965122 None:intergenic 40.0%
! CCACACAATAGTGTTGTTCT+CGG - Chr6:20965104-20965123 None:intergenic 40.0%
! GCGCCTATTTTCATCTCATA+TGG + Chr6:20966304-20966323 MsG0680031475.01.T01:intron 40.0%
! GGAGCATCAGATCAAACTAT+CGG + Chr6:20965468-20965487 MsG0680031475.01.T01:CDS 40.0%
! TAAGCTTTCACCAGCATTGA+CGG + Chr6:20965234-20965253 MsG0680031475.01.T01:CDS 40.0%
! TCCCCAAATACTTTCTGAAG+AGG - Chr6:20965376-20965395 None:intergenic 40.0%
! TCTTAGGTATCGTGCGAATT+TGG - Chr6:20964913-20964932 None:intergenic 40.0%
! TCTTGTTTGTGACACAACAC+AGG + Chr6:20967105-20967124 MsG0680031475.01.T01:three_prime_UTR 40.0%
! TGCTGCACTTTCTAGAAAGA+AGG + Chr6:20964808-20964827 MsG0680031475.01.T01:CDS 40.0%
!! AGAATCAGGTTGGTGGTTTA+GGG + Chr6:20964525-20964544 MsG0680031475.01.T01:CDS 40.0%
!! CAGCCTCTTCAGAAAGTATT+TGG + Chr6:20965370-20965389 MsG0680031475.01.T01:CDS 40.0%
!! CCTGCTTTGAGATTCAATCA+AGG - Chr6:20965713-20965732 None:intergenic 40.0%
!! CTTAATCAGAATCAGGTTGG+TGG + Chr6:20964518-20964537 MsG0680031475.01.T01:CDS 40.0%
!! GCCTCTTCAGAAAGTATTTG+GGG + Chr6:20965372-20965391 MsG0680031475.01.T01:CDS 40.0%
!! GCGTTTAGTTCTGAATGGTT+TGG - Chr6:20963668-20963687 None:intergenic 40.0%
!! GTGAAGCGTTTAGTTCTGAA+TGG - Chr6:20963673-20963692 None:intergenic 40.0%
!! GTTGGTGGTTTAGGGAATTT+AGG + Chr6:20964533-20964552 MsG0680031475.01.T01:CDS 40.0%
!! TCATCATCCTTTGGTAATGC+TGG + Chr6:20964260-20964279 MsG0680031475.01.T01:CDS 40.0%
!!! AAATGGCTGCTGGTTTTCAA+GGG + Chr6:20964360-20964379 MsG0680031475.01.T01:CDS 40.0%
!!! CATTTTCTAAGACCTGCAAC+TGG + Chr6:20966467-20966486 MsG0680031475.01.T01:intron 40.0%
!!! GGTTTTGAAGTGAAGAGGAA+AGG + Chr6:20965154-20965173 MsG0680031475.01.T01:CDS 40.0%
AAGGGAGTTGTCTGCACTAT+TGG + Chr6:20965552-20965571 MsG0680031475.01.T01:CDS 45.0%
ACTATCTTCAGAGTCCACGT+CGG - Chr6:20964953-20964972 None:intergenic 45.0%
ATCTTCCTGAATCCAGATCG+AGG + Chr6:20963965-20963984 MsG0680031475.01.T01:five_prime_UTR 45.0%
CAAGCTCATTTGCAAGCTCA+AGG + Chr6:20964488-20964507 MsG0680031475.01.T01:CDS 45.0%
CACAAATACGGCATGGAAGA+TGG - Chr6:20966874-20966893 None:intergenic 45.0%
CCGAGAACAACACTATTGTG+TGG + Chr6:20965101-20965120 MsG0680031475.01.T01:CDS 45.0%
CTGAGAAACCAATGCAGGAA+AGG + Chr6:20964720-20964739 MsG0680031475.01.T01:CDS 45.0%
CTTGAAAACCAGCAGCCATT+TGG - Chr6:20964361-20964380 None:intergenic 45.0%
GCAGACAACTCCCTTTGAAT+AGG - Chr6:20965547-20965566 None:intergenic 45.0%
GCCGAGAACTTTGGATACAT+CGG - Chr6:20965037-20965056 None:intergenic 45.0%
GCTTGGGCTTGTGAAAAAAC+AGG - Chr6:20964314-20964333 None:intergenic 45.0%
GGTGCTTCTTCATCATCCTT+TGG + Chr6:20964251-20964270 MsG0680031475.01.T01:CDS 45.0%
GTTAGTTCCATCGGTCTCAA+CGG - Chr6:20964665-20964684 None:intergenic 45.0%
GTTGTAGTAGTCCACAATGG+TGG + Chr6:20967009-20967028 MsG0680031475.01.T01:three_prime_UTR 45.0%
GTTTACCTCGATCTGGATTC+AGG - Chr6:20963973-20963992 None:intergenic 45.0%
TATCGGGAAATAGTCCAGCT+GGG + Chr6:20965485-20965504 MsG0680031475.01.T01:CDS 45.0%
TATGGCACTATGTGAAGGCT+AGG + Chr6:20965305-20965324 MsG0680031475.01.T01:CDS 45.0%
TCAAAACCTTCTTGAGGAGC+AGG - Chr6:20965142-20965161 None:intergenic 45.0%
TGATGCTCCAGAACTATAGG+TGG - Chr6:20965457-20965476 None:intergenic 45.0%
TGCGATATGGCACTATGTGA+AGG + Chr6:20965300-20965319 MsG0680031475.01.T01:CDS 45.0%
TGCTCAAAGCTTACCATGGT+TGG - Chr6:20965804-20965823 None:intergenic 45.0%
TTGTTCTCGGGATATAGCCT+CGG - Chr6:20965091-20965110 None:intergenic 45.0%
! AAGATGGGGAAGCTTTAGCT+AGG - Chr6:20963730-20963749 None:intergenic 45.0%
! ACGTGGACTCTGAAGATAGT+TGG + Chr6:20964953-20964972 MsG0680031475.01.T01:CDS 45.0%
! AGATGGGGAAGCTTTAGCTA+GGG - Chr6:20963729-20963748 None:intergenic 45.0%
! CGTGGACTCTGAAGATAGTT+GGG + Chr6:20964954-20964973 MsG0680031475.01.T01:CDS 45.0%
! GAAAAATCCACGAGCATCGT+AGG + Chr6:20965635-20965654 MsG0680031475.01.T01:CDS 45.0%
! GAAGATAGTTGGGAGGGTAT+TGG + Chr6:20964964-20964983 MsG0680031475.01.T01:CDS 45.0%
! GAAGCACCAATGCCTTTAGA+AGG - Chr6:20964239-20964258 None:intergenic 45.0%
! GACTCTGAAGATAGTTGGGA+GGG + Chr6:20964958-20964977 MsG0680031475.01.T01:CDS 45.0%
! GAGTGCTTGTTACGATGCAA+TGG + Chr6:20965507-20965526 MsG0680031475.01.T01:CDS 45.0%
! TTTGAAACCACCTATGAGGC+CGG + Chr6:20964610-20964629 MsG0680031475.01.T01:CDS 45.0%
!! CAGAATCAGGTTGGTGGTTT+AGG + Chr6:20964524-20964543 MsG0680031475.01.T01:CDS 45.0%
!! CTTTCCTGCATTGGTTTCTC+AGG - Chr6:20964722-20964741 None:intergenic 45.0%
!! GTCCACAATGGTGGATTCTT+TGG + Chr6:20967018-20967037 MsG0680031475.01.T01:three_prime_UTR 45.0%
!! GTCCTTTGAAACCACCTATG+AGG + Chr6:20964606-20964625 MsG0680031475.01.T01:CDS 45.0%
!! TTCTGAGGCGAAAATCCAAC+CGG - Chr6:20964632-20964651 None:intergenic 45.0%
!!! CAAATGGCTGCTGGTTTTCA+AGG + Chr6:20964359-20964378 MsG0680031475.01.T01:CDS 45.0%
!!! TCTTTTTCAGCACTGCGACT+AGG - Chr6:20965760-20965779 None:intergenic 45.0%
!! TATAAAATAAAATAAAACAA+TGG - Chr6:20965851-20965870 None:intergenic 5.0%
AGCTCAAGCTCAAGCCCAAA+TGG + Chr6:20964343-20964362 MsG0680031475.01.T01:CDS 50.0%
CAATCAATTCCGGCAGACGA+TGG - Chr6:20965931-20965950 None:intergenic 50.0%
CTATCGGGAAATAGTCCAGC+TGG + Chr6:20965484-20965503 MsG0680031475.01.T01:CDS 50.0%
CTCGCAGGATCCATATGCTA+TGG - Chr6:20966906-20966925 None:intergenic 50.0%
GAAAATCCAACCGGCCTCAT+AGG - Chr6:20964623-20964642 None:intergenic 50.0%
GAAACCAATGCAGGAAAGGG+TGG + Chr6:20964724-20964743 MsG0680031475.01.T01:CDS 50.0%
GACGACTTCTGAACTACTCC+CGG - Chr6:20965013-20965032 None:intergenic 50.0%
GCAAGAACTTCCGTCAATGC+TGG - Chr6:20965247-20965266 None:intergenic 50.0%
GCTTCCTGAGAAACCAATGC+AGG + Chr6:20964715-20964734 MsG0680031475.01.T01:CDS 50.0%
GGCCTCATAGGTGGTTTCAA+AGG - Chr6:20964611-20964630 None:intergenic 50.0%
GGGCATTCCAGCATTACCAA+AGG - Chr6:20964270-20964289 None:intergenic 50.0%
TCTAGGTATCACGTGCTTCC+TGG - Chr6:20966759-20966778 None:intergenic 50.0%
TCTCGAGTTTGAGTCTCGTG+TGG + Chr6:20964784-20964803 MsG0680031475.01.T01:CDS 50.0%
TGCTCCAGAACTATAGGTGG+TGG - Chr6:20965454-20965473 None:intergenic 50.0%
TTGAGCTTGAGCTTGAGCCT+GGG - Chr6:20964336-20964355 None:intergenic 50.0%
! AAATCCACGAGCATCGTAGG+AGG + Chr6:20965638-20965657 MsG0680031475.01.T01:CDS 50.0%
! GGACTCTGAAGATAGTTGGG+AGG + Chr6:20964957-20964976 MsG0680031475.01.T01:CDS 50.0%
! GGGAAGCTTTAGCTAGGGTT+TGG - Chr6:20963724-20963743 None:intergenic 50.0%
! TCCAGAACTATAGGTGGTGG+AGG - Chr6:20965451-20965470 None:intergenic 50.0%
! TTTTTCACAAGCCCAAGCCC+AGG + Chr6:20964316-20964335 MsG0680031475.01.T01:CDS 50.0%
!! AGGAGCACTAGGACTTCTCT+AGG - Chr6:20966776-20966795 None:intergenic 50.0%
!! CCAGAACTATAGGTGGTGGA+GGG - Chr6:20965450-20965469 None:intergenic 50.0%
!! GTTGGGAGGGTATTGGAAGA+TGG + Chr6:20964971-20964990 MsG0680031475.01.T01:CDS 50.0%
!!! AAGGGTGGCTGCTATTTTGC+CGG + Chr6:20964739-20964758 MsG0680031475.01.T01:CDS 50.0%
AAACCACCTATGAGGCCGGT+TGG + Chr6:20964614-20964633 MsG0680031475.01.T01:CDS 55.0%
AACTAACGCCTGCTGCTGCA+CGG + Chr6:20964678-20964697 MsG0680031475.01.T01:CDS 55.0%
AATCCAACCGGCCTCATAGG+TGG - Chr6:20964620-20964639 None:intergenic 55.0%
AGGAGGCGGGCATTCTTTCT+TGG + Chr6:20965655-20965674 MsG0680031475.01.T01:CDS 55.0%
AGGGATCTGAAAGCTGCAGC+TGG + Chr6:20965730-20965749 MsG0680031475.01.T01:CDS 55.0%
AGGGCAGTTTCCACAGTCAC+AGG + Chr6:20964379-20964398 MsG0680031475.01.T01:CDS 55.0%
ATAGCATGGGCCTGTGACTG+TGG - Chr6:20964392-20964411 None:intergenic 55.0%
ATCTTCAGAGTCCACGTCGG+AGG - Chr6:20964950-20964969 None:intergenic 55.0%
CAACTAGTTGCAGTGCTCGC+AGG - Chr6:20966921-20966940 None:intergenic 55.0%
CATACAGGGTTGCCAGTTGC+AGG - Chr6:20966482-20966501 None:intergenic 55.0%
CCCTCCACCACCTATAGTTC+TGG + Chr6:20965447-20965466 MsG0680031475.01.T01:CDS 55.0%
CGATCACCTGCTCCTCAAGA+AGG + Chr6:20965133-20965152 MsG0680031475.01.T01:CDS 55.0%
CTGGCAACCCTGTATGACCA+TGG + Chr6:20966486-20966505 MsG0680031475.01.T01:intron 55.0%
CTTGAGCTTGAGCTTGAGCC+TGG - Chr6:20964337-20964356 None:intergenic 55.0%
GAACTACTCCCGGCTGATCA+GGG - Chr6:20965003-20965022 None:intergenic 55.0%
GCAGCAGGCGTTAGTTCCAT+CGG - Chr6:20964674-20964693 None:intergenic 55.0%
TCGTAACAAGCACTCCCAGC+TGG - Chr6:20965502-20965521 None:intergenic 55.0%
TGAACTACTCCCGGCTGATC+AGG - Chr6:20965004-20965023 None:intergenic 55.0%
TGCAGCTTGTGCATGAGCCT+GGG - Chr6:20964447-20964466 None:intergenic 55.0%
TTGAATCGCAAACCCGCTGC+AGG + Chr6:20966723-20966742 MsG0680031475.01.T01:CDS 55.0%
TTGAGCTTGAGCCTGGGCTT+GGG - Chr6:20964330-20964349 None:intergenic 55.0%
TTTCTCGCCGTTGAGACCGA+TGG + Chr6:20964655-20964674 MsG0680031475.01.T01:CDS 55.0%
! GGCTCGGCATTTGGCTTCTT+AGG - Chr6:20964929-20964948 None:intergenic 55.0%
! TGGAGCATCACTTCCTGCAG+CGG - Chr6:20966739-20966758 None:intergenic 55.0%
!! GGTGGTGGAGGGAACAAATG+TGG - Chr6:20965439-20965458 None:intergenic 55.0%
CGTCGTCGATGTCTACGCCT+GGG + Chr6:20964564-20964583 MsG0680031475.01.T01:CDS 60.0%
CTGCAGCTTGTGCATGAGCC+TGG - Chr6:20964448-20964467 None:intergenic 60.0%
CTTGAGCTTGAGCCTGGGCT+TGG - Chr6:20964331-20964350 None:intergenic 60.0%
GCAGCCACCCTTTCCTGCAT+TGG - Chr6:20964731-20964750 None:intergenic 60.0%
GCTCAAGCCCAAATGGCTGC+TGG + Chr6:20964350-20964369 MsG0680031475.01.T01:CDS 60.0%
GCTGCAGGAAGTGATGCTCC+AGG + Chr6:20966738-20966757 MsG0680031475.01.T01:CDS 60.0%
TAAGGCTCAGGCTCAAGCCC+AGG + Chr6:20964427-20964446 MsG0680031475.01.T01:CDS 60.0%
TCGATGTCTACGCCTGGGAG+CGG + Chr6:20964569-20964588 MsG0680031475.01.T01:CDS 60.0%
TCGTCGTCGATGTCTACGCC+TGG + Chr6:20964563-20964582 MsG0680031475.01.T01:CDS 60.0%
TTCTTCCTCCGTGCAGCAGC+AGG - Chr6:20964689-20964708 None:intergenic 60.0%
! GGAGCATCACTTCCTGCAGC+GGG - Chr6:20966738-20966757 None:intergenic 60.0%
! TCCACGAGCATCGTAGGAGG+CGG + Chr6:20965641-20965660 MsG0680031475.01.T01:CDS 60.0%
!! TGGCGTTGACCCTGATCAGC+CGG + Chr6:20964991-20965010 MsG0680031475.01.T01:CDS 60.0%
CAAATGCCGAGCCTCCGACG+TGG + Chr6:20964936-20964955 MsG0680031475.01.T01:CDS 65.0%
CACGTCGGAGGCTCGGCATT+TGG - Chr6:20964938-20964957 None:intergenic 65.0%
CAGAGTCCACGTCGGAGGCT+CGG - Chr6:20964945-20964964 None:intergenic 65.0%
CGTTTCGCACTACCGCTCCC+AGG - Chr6:20964584-20964603 None:intergenic 65.0%
GGGAGCGGTAGTGCGAAACG+TGG + Chr6:20964584-20964603 MsG0680031475.01.T01:CDS 65.0%
TAACGCCTGCTGCTGCACGG+AGG + Chr6:20964681-20964700 MsG0680031475.01.T01:CDS 65.0%
! CCACGAGCATCGTAGGAGGC+GGG + Chr6:20965642-20965661 MsG0680031475.01.T01:CDS 65.0%
!! GGCGTTGACCCTGATCAGCC+GGG + Chr6:20964992-20965011 MsG0680031475.01.T01:CDS 65.0%
CCCGCCTCCTACGATGCTCG+TGG - Chr6:20965645-20965664 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 20963628 20967239 20963628 ID=MsG0680031475.01;Name=MsG0680031475.01
Chr6 mRNA 20963628 20967239 20963628 ID=MsG0680031475.01.T01;Parent=MsG0680031475.01;Name=MsG0680031475.01.T01;_AED=0.41;_eAED=0.41;_QI=474|1|1|1|0.5|0.33|3|469|557
Chr6 exon 20963628 20963986 20963628 ID=MsG0680031475.01.T01:exon:13266;Parent=MsG0680031475.01.T01
Chr6 exon 20964094 20965809 20964094 ID=MsG0680031475.01.T01:exon:13267;Parent=MsG0680031475.01.T01
Chr6 exon 20966698 20967239 20966698 ID=MsG0680031475.01.T01:exon:13268;Parent=MsG0680031475.01.T01
Chr6 five_prime_UTR 20963628 20963986 20963628 ID=MsG0680031475.01.T01:five_prime_utr;Parent=MsG0680031475.01.T01
Chr6 five_prime_UTR 20964094 20964208 20964094 ID=MsG0680031475.01.T01:five_prime_utr;Parent=MsG0680031475.01.T01
Chr6 CDS 20964209 20965809 20964209 ID=MsG0680031475.01.T01:cds;Parent=MsG0680031475.01.T01
Chr6 CDS 20966698 20966770 20966698 ID=MsG0680031475.01.T01:cds;Parent=MsG0680031475.01.T01
Chr6 three_prime_UTR 20966771 20967239 20966771 ID=MsG0680031475.01.T01:three_prime_utr;Parent=MsG0680031475.01.T01
Gene Sequence

>MsG0680031475.01.T01

ATGTCTGTGAACAATAATAACAACAACCCTTCTAAAGGCATTGGTGCTTCTTCATCATCCTTTGGTAATGCTGGAATGCCCTCTAATTCTATGTCTACAAACCCTGTTTTTTCACAAGCCCAAGCCCAGGCTCAAGCTCAAGCTCAAGCCCAAATGGCTGCTGGTTTTCAAGGGCAGTTTCCACAGTCACAGGCCCATGCTATAGTTCAAGCACAAAATAAGGCTCAGGCTCAAGCCCAGGCTCATGCACAAGCTGCAGCAGTAGCTCATGCTCAGCTTCAAGCTCATTTGCAAGCTCAAGGGTTGAGTCTTAATCAGAATCAGGTTGGTGGTTTAGGGAATTTAGGAGTTTCGTCGTCGTCGATGTCTACGCCTGGGAGCGGTAGTGCGAAACGTGGTCCTTTGAAACCACCTATGAGGCCGGTTGGATTTTCGCCTCAGAATAATTTCTCGCCGTTGAGACCGATGGAACTAACGCCTGCTGCTGCACGGAGGAAGAAGCAGAAGCTTCCTGAGAAACCAATGCAGGAAAGGGTGGCTGCTATTTTGCCGGAATCTGCTCTTTATACACAGCTTCTCGAGTTTGAGTCTCGTGTGGATGCTGCACTTTCTAGAAAGAAGGTTGATATTCAGGAAGCGCTGAAAAATCCGCCTTGTATTCAGAAAACTCTTCGTATTTATGTATTTAACACTTTTGCAAACCAAATTCGCACGATACCTAAGAAGCCAAATGCCGAGCCTCCGACGTGGACTCTGAAGATAGTTGGGAGGGTATTGGAAGATGGCGTTGACCCTGATCAGCCGGGAGTAGTTCAGAAGTCGTCACCGATGTATCCAAAGTTCTCGGCTTTCTTTAAAAAAGTAATCATTACTTTGGATCCGAGGCTATATCCCGAGAACAACACTATTGTGTGGGATAGTTATCGATCACCTGCTCCTCAAGAAGGTTTTGAAGTGAAGAGGAAAGGGGATAAAGAGTTTTCGGTGAATATACAGTTTTATATGAATTATGCACCTGAGAAGTTTAAGCTTTCACCAGCATTGACGGAAGTTCTTGCTATCGACGTTGATACTCGTCCAAGAATTATTGCTGCGATATGGCACTATGTGAAGGCTAGGAAACTACAGAACCCTAACGACCCTTCTTTTTTTCACTGTGATCAGCCTCTTCAGAAAGTATTTGGGGAAGAAAAGGTGAAGTTCACAACAGTTTCGCAGAAAATATCGCCACATTTGTTCCCTCCACCACCTATAGTTCTGGAGCATCAGATCAAACTATCGGGAAATAGTCCAGCTGGGAGTGCTTGTTACGATGCAATGGTTGATATTCCTTTTCCTATTCAAAGGGAGTTGTCTGCACTATTGGCAAATGTCGAGAAGAACAAAGAGATTGAAACATGTGATGAAGCGATATGTGGAATCATTAGAAAAATCCACGAGCATCGTAGGAGGCGGGCATTCTTTCTTGGTTTCAGTCAATCTCCAGTAGAATTTATTAATGCCTTGATTGAATCTCAAAGCAGGGATCTGAAAGCTGCAGCTGGAGAACCTAGTCGCAGTGCTGAAAAAGAGCGTCGAGCAGATTTTTTCAACCAACCATGGGTTGAAGATGCTGTTATTCGATACTTGAATCGCAAACCCGCTGCAGGAAGTGATGCTCCAGGAAGCACGTGA
Protein sequence

>MsG0680031475.01.T01

MSVNNNNNNPSKGIGASSSSFGNAGMPSNSMSTNPVFSQAQAQAQAQAQAQMAAGFQGQFPQSQAHAIVQAQNKAQAQAQAHAQAAAVAHAQLQAHLQAQGLSLNQNQVGGLGNLGVSSSSMSTPGSGSAKRGPLKPPMRPVGFSPQNNFSPLRPMELTPAAARRKKQKLPEKPMQERVAAILPESALYTQLLEFESRVDAALSRKKVDIQEALKNPPCIQKTLRIYVFNTFANQIRTIPKKPNAEPPTWTLKIVGRVLEDGVDPDQPGVVQKSSPMYPKFSAFFKKVIITLDPRLYPENNTIVWDSYRSPAPQEGFEVKRKGDKEFSVNIQFYMNYAPEKFKLSPALTEVLAIDVDTRPRIIAAIWHYVKARKLQNPNDPSFFHCDQPLQKVFGEEKVKFTTVSQKISPHLFPPPPIVLEHQIKLSGNSPAGSACYDAMVDIPFPIQRELSALLANVEKNKEIETCDEAICGIIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSRDLKAAAGEPSRSAEKERRADFFNQPWVEDAVIRYLNRKPAAGSDAPGST*