AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680031638.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031638.01.T01 MTR_6g027680 67.303 419 77 8 1 369 1 409 1.17e-171 491
MsG0680031638.01.T01 MTR_6g027630 65.777 412 92 8 1 369 1 406 1.22e-167 481
MsG0680031638.01.T01 MTR_6g027630 65.777 412 92 8 1 369 1 406 9.60e-167 481
MsG0680031638.01.T01 MTR_6g027660 65.228 417 87 9 1 369 1 407 2.64e-162 469
MsG0680031638.01.T01 MTR_6g027650 62.621 412 98 10 1 369 1 399 2.47e-153 446
MsG0680031638.01.T01 MTR_7g086610 51.378 399 138 9 14 369 10 395 1.14e-113 345
MsG0680031638.01.T01 MTR_6g027630 60.550 327 82 7 84 369 1 321 6.61e-111 335
MsG0680031638.01.T01 MTR_7g086510 48.072 389 157 6 18 369 21 401 2.95e-100 310
MsG0680031638.01.T01 MTR_6g027670 79.464 112 16 2 262 369 32 140 1.38e-48 167
MsG0680031638.01.T01 MTR_7g007850 29.829 409 212 16 16 369 22 410 3.16e-27 113
MsG0680031638.01.T01 MTR_7g007850 29.829 409 212 16 16 369 22 410 3.66e-27 113
MsG0680031638.01.T01 MTR_7g007850 29.829 409 212 16 16 369 22 410 7.04e-27 112
MsG0680031638.01.T01 MTR_7g007850 29.829 409 212 16 16 369 22 410 8.99e-27 112
MsG0680031638.01.T01 MTR_8g089320 23.691 401 243 11 15 369 45 428 5.18e-25 107
MsG0680031638.01.T01 MTR_1g030660 25.063 399 238 12 16 369 41 423 6.25e-25 107
MsG0680031638.01.T01 MTR_1g111740 25.304 411 231 11 16 369 24 415 4.30e-24 104
MsG0680031638.01.T01 MTR_2g035430 25.505 396 249 10 12 369 41 428 9.28e-24 103
MsG0680031638.01.T01 MTR_8g089360 24.190 401 235 13 16 369 38 416 3.78e-21 95.5
MsG0680031638.01.T01 MTR_8g089360 24.190 401 235 13 16 369 55 433 4.69e-21 95.5
MsG0680031638.01.T01 MTR_8g461380 22.251 391 252 9 23 369 53 435 4.74e-19 89.4
MsG0680031638.01.T01 MTR_8g089342 39.583 96 57 1 15 109 46 141 2.98e-15 72.8
MsG0680031638.01.T01 MTR_4g099270 24.607 382 234 7 31 369 12 382 1.17e-13 72.8
MsG0680031638.01.T01 MTR_4g099270 24.931 361 217 7 31 348 33 382 2.42e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031638.01.T01 AT1G58030 51.449 414 145 10 1 369 1 403 1.34e-120 363
MsG0680031638.01.T01 AT5G36940 49.250 400 145 10 16 369 5 392 5.92e-113 343
MsG0680031638.01.T01 AT3G03720 49.746 394 146 8 18 369 4 387 3.53e-109 333
MsG0680031638.01.T01 AT1G05940 27.532 385 243 7 20 369 27 410 6.34e-32 126
MsG0680031638.01.T01 AT1G05940 27.532 385 243 7 20 369 27 410 1.15e-31 126
MsG0680031638.01.T01 AT1G05940 27.532 385 243 7 20 369 27 410 1.64e-31 125
MsG0680031638.01.T01 AT4G21120 25.558 403 231 16 16 369 44 426 2.00e-28 117
MsG0680031638.01.T01 AT2G34960 26.173 405 234 14 11 369 34 419 1.42e-26 111
MsG0680031638.01.T01 AT5G04770 27.073 410 236 12 11 369 26 423 2.16e-25 108
MsG0680031638.01.T01 AT3G10600 25.182 413 240 12 11 369 25 422 1.75e-21 96.7
MsG0680031638.01.T01 AT1G17120 23.691 401 237 12 16 369 59 437 1.06e-20 94.4
MsG0680031638.01.T01 AT5G04770 26.234 385 221 12 11 344 26 398 2.38e-20 92.4
MsG0680031638.01.T01 AT1G05940 24.038 208 130 4 190 369 85 292 8.83e-11 63.5

Find 103 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTTACCACTTTCATTTA+TGG 0.087114 6:-23783282 MsG0680031638.01.T01:CDS
CATAGTAGCTGGTGGTTATT+TGG 0.112345 6:-23781805 MsG0680031638.01.T01:CDS
TGTGATTAGGCTGCACTTAT+TGG 0.198881 6:-23782593 MsG0680031638.01.T01:intron
CCACTTTCATTTATGGTTGC+TGG 0.262547 6:-23783275 MsG0680031638.01.T01:CDS
AGACCCACTTTCAGCAATTA+TGG 0.269802 6:-23782508 MsG0680031638.01.T01:CDS
GCCATAGCCATCAAGATTCT+TGG 0.280764 6:+23779005 None:intergenic
TTAAAATGACTATACCAAAT+TGG 0.295829 6:+23782776 None:intergenic
TAAAATGACTATACCAAATT+GGG 0.317977 6:+23782777 None:intergenic
GTTAACTATTCCTCATCTTA+TGG 0.319574 6:-23783968 MsG0680031638.01.T01:CDS
GGATTCAACTGAAGTTTAAT+TGG 0.322206 6:-23778818 MsG0680031638.01.T01:CDS
TGGTCCTTAGTATTGGAATA+TGG 0.326272 6:-23782834 MsG0680031638.01.T01:CDS
ATGGATGTCTCTCAACTTGC+CGG 0.345790 6:-23778873 MsG0680031638.01.T01:CDS
CCAATTGCAGTTGGTTCAAC+CGG 0.348168 6:+23778788 None:intergenic
GTAACTATGGTACTCTTAAC+AGG 0.356512 6:+23778927 None:intergenic
GTTACTTGGATTCTGTGTAC+TGG 0.357570 6:-23782477 MsG0680031638.01.T01:CDS
TTTGCAGGGTTGTGGTTGAT+TGG 0.362513 6:-23782858 MsG0680031638.01.T01:intron
TGACAGCAATGCAGATGAAA+TGG 0.365215 6:+23780976 None:intergenic
ATAGTAGCTGGTGGTTATTT+GGG 0.375685 6:-23781804 MsG0680031638.01.T01:CDS
CTCTCAGCCAAGAATCTTGA+TGG 0.378171 6:-23779012 MsG0680031638.01.T01:intron
CCCAGTGGCAAATCTCTTTG+AGG 0.378470 6:+23781095 None:intergenic
TTCATCTGCATTGCTGTCAA+TGG 0.382765 6:-23780972 MsG0680031638.01.T01:CDS
CACAAGGTTCATCATGTTCA+TGG 0.387079 6:-23784077 MsG0680031638.01.T01:CDS
ATTCCTCATCTTATGGCAAT+TGG 0.393515 6:-23783961 MsG0680031638.01.T01:intron
TACAGATACATTATAAATGC+TGG 0.396993 6:-23780797 MsG0680031638.01.T01:intron
TGGTGCTGGTGTATATGTTT+TGG 0.399685 6:-23783336 MsG0680031638.01.T01:CDS
TAATCTATATTGCAGTTGTT+AGG 0.400583 6:-23778839 MsG0680031638.01.T01:CDS
AAGTTTAATTGGCGCTCAAC+CGG 0.401898 6:-23778807 MsG0680031638.01.T01:CDS
GGATTCAAAACTGCATGGAT+TGG 0.405899 6:-23781783 MsG0680031638.01.T01:CDS
AGCTCTTTGTTATGCTGAGT+TGG 0.406105 6:-23783234 MsG0680031638.01.T01:CDS
GGAGGTGTGGACAACTTGCC+AGG 0.415029 6:-23782572 MsG0680031638.01.T01:CDS
CAGGGTTGTGGTTGATTGGT+TGG 0.417474 6:-23782854 MsG0680031638.01.T01:CDS
TTATCCAATCAACACATTCC+TGG 0.418229 6:-23782546 MsG0680031638.01.T01:CDS
GATTGGTTGGTCCTTAGTAT+TGG 0.420124 6:-23782841 MsG0680031638.01.T01:CDS
TTATGGTATTCATTGTTACT+TGG 0.420224 6:-23782491 MsG0680031638.01.T01:CDS
TGCAGATGAAATGGGGTGTT+AGG 0.420318 6:+23780985 None:intergenic
GATTGGATATAAACTCCTAC+AGG 0.423575 6:-23781766 MsG0680031638.01.T01:CDS
AGCAACAAGGCCGGTAACTA+TGG 0.428211 6:+23778914 None:intergenic
AATCCCAGGAATGTGTTGAT+TGG 0.428696 6:+23782542 None:intergenic
GTTAAGAGTACCATAGTTAC+CGG 0.433321 6:-23778924 MsG0680031638.01.T01:CDS
CACTATGCTTATATATGTCT+TGG 0.434864 6:-23783179 MsG0680031638.01.T01:CDS
ATCATAGTGGAGTGTGATAA+GGG 0.435840 6:+23784231 None:intergenic
TTGATATTTATCATAGTAGC+TGG 0.438493 6:-23781816 MsG0680031638.01.T01:CDS
TATCCAATCAACACATTCCT+GGG 0.458013 6:-23782545 MsG0680031638.01.T01:CDS
AATCATAGTGGAGTGTGATA+AGG 0.463978 6:+23784230 None:intergenic
GCACTTTGTTCATCATTGCT+TGG 0.464197 6:-23780765 MsG0680031638.01.T01:CDS
GACAGCAATGCAGATGAAAT+GGG 0.470427 6:+23780977 None:intergenic
GTACAATGTTTGCAGGGTTG+TGG 0.479358 6:-23782866 MsG0680031638.01.T01:intron
TTACTTGGATTCTGTGTACT+GGG 0.485333 6:-23782476 MsG0680031638.01.T01:CDS
TGCTGTCAATGGAATGCAAT+GGG 0.485914 6:-23780961 MsG0680031638.01.T01:CDS
TATGATAGTATCATTGTTGT+TGG 0.489667 6:-23781036 MsG0680031638.01.T01:CDS
TCAGGTGTCGGTGCAACAAT+TGG 0.490497 6:-23783356 MsG0680031638.01.T01:intron
GATTAGGCTGCACTTATTGG+AGG 0.490829 6:-23782590 MsG0680031638.01.T01:intron
ACAGATACATTATAAATGCT+GGG 0.491980 6:-23780796 MsG0680031638.01.T01:intron
GCCAAGAATCTTGATGGCTA+TGG 0.495624 6:-23779006 MsG0680031638.01.T01:CDS
CTTTGTTCATCATTGCTTGG+TGG 0.496988 6:-23780762 MsG0680031638.01.T01:CDS
AATACCATAATTGCTGAAAG+TGG 0.498101 6:+23782504 None:intergenic
AATAGCAATAATTCTCATCA+TGG 0.515357 6:-23784009 MsG0680031638.01.T01:CDS
ATAAATGAAAGTGGTAAAGC+AGG 0.516397 6:+23783284 None:intergenic
CTTATATATGTCTTGGTGAA+GGG 0.521650 6:-23783172 MsG0680031638.01.T01:intron
GCTTATATATGTCTTGGTGA+AGG 0.523660 6:-23783173 MsG0680031638.01.T01:CDS
GATACCATATTCCAATACTA+AGG 0.525955 6:+23782830 None:intergenic
GATAGTATCATTGTTGTTGG+TGG 0.534311 6:-23781033 MsG0680031638.01.T01:CDS
CCAGCAACCATAAATGAAAG+TGG 0.535430 6:+23783275 None:intergenic
TTAGGATTGATATCATAGTA+AGG 0.543517 6:+23781003 None:intergenic
CCTCAAAGAGATTTGCCACT+GGG 0.544631 6:-23781095 MsG0680031638.01.T01:CDS
TGTCTCTCAACTTGCCGGCA+TGG 0.545958 6:-23778868 MsG0680031638.01.T01:CDS
GGCTGCACTTATTGGAGGTG+TGG 0.547561 6:-23782585 MsG0680031638.01.T01:CDS
GCATCATTGTCTCTATGTTG+TGG 0.548129 6:-23781065 MsG0680031638.01.T01:CDS
GTCGGTGCAACAATTGGTGC+TGG 0.550230 6:-23783350 MsG0680031638.01.T01:CDS
GTGTTGATTGGATAAAATCC+TGG 0.551406 6:+23782554 None:intergenic
TCCTCAAAGAGATTTGCCAC+TGG 0.553096 6:-23781096 MsG0680031638.01.T01:CDS
GCAAGAATAATCAATCATAG+TGG 0.553846 6:+23784218 None:intergenic
TCATGGAGTGCAACTTGTCA+AGG 0.553943 6:-23783992 MsG0680031638.01.T01:CDS
TAAGGCTGCAGCAACAAGGC+CGG 0.554127 6:+23778905 None:intergenic
TTTGGTTGGAACAGTGGCAA+GGG 0.555676 6:-23783318 MsG0680031638.01.T01:CDS
GCTTGGTGGAATGTTGCCTC+AGG 0.563622 6:-23780748 MsG0680031638.01.T01:intron
AAAATGACTATACCAAATTG+GGG 0.564150 6:+23782778 None:intergenic
ATTTGGGATTCAAAACTGCA+TGG 0.573591 6:-23781788 MsG0680031638.01.T01:CDS
GAATCTTGATGGCTATGGCA+AGG 0.575725 6:-23779001 MsG0680031638.01.T01:CDS
TGATAAGCACTTCCAGCAGA+AGG 0.576548 6:+23783200 None:intergenic
TTAGTATTGGAATATGGTAT+CGG 0.578654 6:-23782828 MsG0680031638.01.T01:CDS
AATCTTGATGGCTATGGCAA+GGG 0.587345 6:-23779000 MsG0680031638.01.T01:CDS
TCTACAACAATATCAATCCC+AGG 0.604451 6:+23782528 None:intergenic
ATACCATAATTGCTGAAAGT+GGG 0.608255 6:+23782505 None:intergenic
TTACCAATTGCCATAAGATG+AGG 0.614829 6:+23783958 None:intergenic
TTTGTTGGTGATGATTCACA+AGG 0.622834 6:-23784093 MsG0680031638.01.T01:CDS
ATATTTATCATAGTAGCTGG+TGG 0.623382 6:-23781813 MsG0680031638.01.T01:CDS
ATGCTAAGGCTGCAGCAACA+AGG 0.627465 6:+23778901 None:intergenic
GGTGGAGCTGCTGTTGCTCG+TGG 0.633220 6:-23782807 MsG0680031638.01.T01:CDS
GTATTGGAATATGGTATCGG+TGG 0.636906 6:-23782825 MsG0680031638.01.T01:CDS
TTGATGGCTATGGCAAGGGA+CGG 0.638975 6:-23778996 MsG0680031638.01.T01:CDS
CAGATACATTATAAATGCTG+GGG 0.645816 6:-23780795 MsG0680031638.01.T01:CDS
CCAAAGGGAAAATACCCTGT+AGG 0.649178 6:+23781751 None:intergenic
TTGCTGTCAATGGAATGCAA+TGG 0.654707 6:-23780962 MsG0680031638.01.T01:CDS
TGGTACTCTTAACAGGAACA+TGG 0.657797 6:+23778934 None:intergenic
ATAGATTAGACTTACCATGC+CGG 0.667015 6:+23778854 None:intergenic
AAGGTTCATCATGTTCATGG+AGG 0.674401 6:-23784074 MsG0680031638.01.T01:CDS
ACAGTGGCAAGGGAACATGC+TGG 0.685380 6:-23783308 MsG0680031638.01.T01:CDS
AAATGACTATACCAAATTGG+GGG 0.695097 6:+23782779 None:intergenic
ATTGGATATAAACTCCTACA+GGG 0.696475 6:-23781765 MsG0680031638.01.T01:intron
ACAGCAATGCAGATGAAATG+GGG 0.729300 6:+23780978 None:intergenic
TCTGTGTACTGGGATCAAAG+AGG 0.747864 6:-23782466 MsG0680031638.01.T01:intron
AATGATGCTGCAATTCCCAG+TGG 0.748958 6:+23781080 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTATATCAGAAAAAAA+TGG + Chr6:23784094-23784113 None:intergenic 10.0%
!!! TTTTTTTCTTTTCATTTTTA+CGG - Chr6:23779959-23779978 MsG0680031638.01.T01:intron 10.0%
!! AATATATTTGACTATTTGAA+TGG + Chr6:23781137-23781156 None:intergenic 15.0%
!! ACACTAATAAAAAAAACAAA+GGG - Chr6:23783858-23783877 MsG0680031638.01.T01:intron 15.0%
!! ACATATTAATATTAATGTTC+CGG + Chr6:23781080-23781099 None:intergenic 15.0%
!! ATAAAACATGATAATATATC+AGG - Chr6:23781409-23781428 MsG0680031638.01.T01:intron 15.0%
!! TACACTAATAAAAAAAACAA+AGG - Chr6:23783857-23783876 MsG0680031638.01.T01:intron 15.0%
!! TTACTATATATACTTATAGT+AGG + Chr6:23783978-23783997 None:intergenic 15.0%
!!! AAAAAGAGAATTATTTTTGA+TGG - Chr6:23778936-23778955 MsG0680031638.01.T01:CDS 15.0%
!!! AAAAGAGAATTATTTTTGAT+GGG - Chr6:23778937-23778956 MsG0680031638.01.T01:CDS 15.0%
!!! CAACTATAAAAAATTTTAGA+GGG + Chr6:23782354-23782373 None:intergenic 15.0%
!!! CGGATTATTATTTTATTTTT+TGG - Chr6:23782490-23782509 MsG0680031638.01.T01:CDS 15.0%
!!! TCAACTATAAAAAATTTTAG+AGG + Chr6:23782355-23782374 None:intergenic 15.0%
!!! TGATTTTCTTAAATTATTAG+CGG - Chr6:23779402-23779421 MsG0680031638.01.T01:intron 15.0%
!!! TTTTTATAATGTCTAATGTT+TGG + Chr6:23783028-23783047 None:intergenic 15.0%
!! AAATCATAAGAATCTAAAGA+AGG + Chr6:23779922-23779941 None:intergenic 20.0%
!! AATCAAAACTCAAATAAGAT+AGG + Chr6:23779546-23779565 None:intergenic 20.0%
!! AATTCAATAATTCAAGTCAA+AGG + Chr6:23779599-23779618 None:intergenic 20.0%
!! ACAAGTAATATACCAAAAAA+TGG + Chr6:23778900-23778919 None:intergenic 20.0%
!! ATTCAATAATTCAAGTCAAA+GGG + Chr6:23779598-23779617 None:intergenic 20.0%
!! CTCTTAAGGTTTAAAAAAAA+CGG + Chr6:23781888-23781907 None:intergenic 20.0%
!! TAAAATGACTATACCAAATT+GGG + Chr6:23780280-23780299 None:intergenic 20.0%
!! TGAAAATGATCTAATAAAGA+AGG + Chr6:23783931-23783950 None:intergenic 20.0%
!! TTAAAATGACTATACCAAAT+TGG + Chr6:23780281-23780300 None:intergenic 20.0%
!! TTTATATCAGAAAAAAATGG+TGG + Chr6:23784091-23784110 None:intergenic 20.0%
!! TTTGTAAATAATCATAGCTT+AGG + Chr6:23783296-23783315 None:intergenic 20.0%
!!! AAGTTAAATCTTTTCATTCT+AGG + Chr6:23783822-23783841 None:intergenic 20.0%
!!! ACTTTTGTTTTTGATGTTTA+AGG - Chr6:23779190-23779209 MsG0680031638.01.T01:intron 20.0%
!!! TAAGAATTTTATACACAAAG+TGG + Chr6:23782181-23782200 None:intergenic 20.0%
!!! TTATTTTTTGGATTACAAGA+GGG - Chr6:23782502-23782521 MsG0680031638.01.T01:CDS 20.0%
!!! TTTATTTTTAGCAGATGTTA+TGG + Chr6:23782577-23782596 None:intergenic 20.0%
!!! TTTATTTTTTGGATTACAAG+AGG - Chr6:23782501-23782520 MsG0680031638.01.T01:CDS 20.0%
!!! TTTTAATGATGTTATTGAAC+TGG - Chr6:23779511-23779530 MsG0680031638.01.T01:intron 20.0%
!!! TTTTTTTAAACCTTAAGAGT+AGG - Chr6:23781889-23781908 MsG0680031638.01.T01:intron 20.0%
! AAAATGACTATACCAAATTG+GGG + Chr6:23780279-23780298 None:intergenic 25.0%
! AATAGCAATAATTCTCATCA+TGG - Chr6:23779045-23779064 MsG0680031638.01.T01:intron 25.0%
! AATGATTATGATATGAAGCA+CGG - Chr6:23779333-23779352 MsG0680031638.01.T01:intron 25.0%
! AATGTTGATACATTTGATAG+TGG - Chr6:23780108-23780127 MsG0680031638.01.T01:intron 25.0%
! ACAGATACATTATAAATGCT+GGG - Chr6:23782258-23782277 MsG0680031638.01.T01:intron 25.0%
! ACTAATGCATACTTAGAAAA+TGG + Chr6:23782209-23782228 None:intergenic 25.0%
! AGAAATTGCAAAACAACTTT+GGG + Chr6:23782387-23782406 None:intergenic 25.0%
! ATATAGAAGTAAGTAGCTTA+GGG - Chr6:23783270-23783289 MsG0680031638.01.T01:CDS 25.0%
! ATTACTTGTTCAGTAAGAAA+AGG - Chr6:23778911-23778930 MsG0680031638.01.T01:CDS 25.0%
! CCGATTAAAAAAAAATGGTT+CGG + Chr6:23780043-23780062 None:intergenic 25.0%
! TAATCTATATTGCAGTTGTT+AGG - Chr6:23784215-23784234 MsG0680031638.01.T01:five_prime_UTR 25.0%
! TACAGATACATTATAAATGC+TGG - Chr6:23782257-23782276 MsG0680031638.01.T01:intron 25.0%
! TATATAGAAGTAAGTAGCTT+AGG - Chr6:23783269-23783288 MsG0680031638.01.T01:CDS 25.0%
! TATGATAGTATCATTGTTGT+TGG - Chr6:23782018-23782037 MsG0680031638.01.T01:intron 25.0%
! TCAATACAAATTTCTCGAAA+CGG - Chr6:23782470-23782489 MsG0680031638.01.T01:CDS 25.0%
! TGAAATGATATTCTGTGATT+AGG - Chr6:23780448-23780467 MsG0680031638.01.T01:intron 25.0%
! TTAGGATTGATATCATAGTA+AGG + Chr6:23782054-23782073 None:intergenic 25.0%
! TTATGGTATTCATTGTTACT+TGG - Chr6:23780563-23780582 MsG0680031638.01.T01:intron 25.0%
! TTGATATTTATCATAGTAGC+TGG - Chr6:23781238-23781257 MsG0680031638.01.T01:intron 25.0%
!! ACATGTTTTTCATCTTGTTA+AGG - Chr6:23779156-23779175 MsG0680031638.01.T01:intron 25.0%
!! ATTAAAAAAAAATGGTTCGG+AGG + Chr6:23780040-23780059 None:intergenic 25.0%
!! TAAATCTTTTCATTCTAGGT+TGG + Chr6:23783818-23783837 None:intergenic 25.0%
!! TTAAAAAAAAATGGTTCGGA+GGG + Chr6:23780039-23780058 None:intergenic 25.0%
!! TTAGTATTGGAATATGGTAT+CGG - Chr6:23780226-23780245 MsG0680031638.01.T01:intron 25.0%
!! TTCATGTAACTTACACTTTT+GGG - Chr6:23781433-23781452 MsG0680031638.01.T01:intron 25.0%
!! TTTCATGTAACTTACACTTT+TGG - Chr6:23781432-23781451 MsG0680031638.01.T01:intron 25.0%
!!! AAGTCTGAAAAACCATTTTT+TGG - Chr6:23778885-23778904 MsG0680031638.01.T01:CDS 25.0%
!!! CCGAACCATTTTTTTTTAAT+CGG - Chr6:23780040-23780059 MsG0680031638.01.T01:intron 25.0%
!!! CTGATCAATGTTTTTAAAAC+TGG - Chr6:23781570-23781589 MsG0680031638.01.T01:intron 25.0%
!!! GTGTTTTACTTTGATTTAAC+AGG - Chr6:23781928-23781947 MsG0680031638.01.T01:intron 25.0%
!!! TAAAAAATTTTAGAGGGTAG+AGG + Chr6:23782348-23782367 None:intergenic 25.0%
!!! TTATTTTTGATGGGTTTTGT+TGG - Chr6:23778946-23778965 MsG0680031638.01.T01:CDS 25.0%
AAAGAAACTAACGCCTAATT+AGG - Chr6:23782537-23782556 MsG0680031638.01.T01:CDS 30.0%
AAAGTTTGAACCTACTCTTA+AGG + Chr6:23781902-23781921 None:intergenic 30.0%
AAATGACTATACCAAATTGG+GGG + Chr6:23780278-23780297 None:intergenic 30.0%
AATACCATAATTGCTGAAAG+TGG + Chr6:23780553-23780572 None:intergenic 30.0%
ACACAAAATATATCACGTCT+CGG + Chr6:23780170-23780189 None:intergenic 30.0%
ACTGCATATATAATCTCTTG+AGG - Chr6:23780347-23780366 MsG0680031638.01.T01:intron 30.0%
ATAAATGAAAGTGGTAAAGC+AGG + Chr6:23779773-23779792 None:intergenic 30.0%
ATACCATAATTGCTGAAAGT+GGG + Chr6:23780552-23780571 None:intergenic 30.0%
ATATTTATCATAGTAGCTGG+TGG - Chr6:23781241-23781260 MsG0680031638.01.T01:intron 30.0%
ATGGTTATGGCAATTTGAAA+TGG + Chr6:23781499-23781518 None:intergenic 30.0%
ATTGGATATAAACTCCTACA+GGG - Chr6:23781289-23781308 MsG0680031638.01.T01:intron 30.0%
CACTATGCTTATATATGTCT+TGG - Chr6:23779875-23779894 MsG0680031638.01.T01:intron 30.0%
CAGAAATTGCAAAACAACTT+TGG + Chr6:23782388-23782407 None:intergenic 30.0%
CAGATACATTATAAATGCTG+GGG - Chr6:23782259-23782278 MsG0680031638.01.T01:intron 30.0%
CTAGATTGGAAATTGAAGAA+TGG + Chr6:23783752-23783771 None:intergenic 30.0%
CTTATATATGTCTTGGTGAA+GGG - Chr6:23779882-23779901 MsG0680031638.01.T01:intron 30.0%
GAAATTGCAAAACAACTTTG+GGG + Chr6:23782386-23782405 None:intergenic 30.0%
GATACCATATTCCAATACTA+AGG + Chr6:23780227-23780246 None:intergenic 30.0%
GCAAGAATAATCAATCATAG+TGG + Chr6:23778839-23778858 None:intergenic 30.0%
GCTTACTTTCTAAGTTACTT+AGG + Chr6:23783344-23783363 None:intergenic 30.0%
GGATTCAACTGAAGTTTAAT+TGG - Chr6:23784236-23784255 MsG0680031638.01.T01:five_prime_UTR 30.0%
GGTCTCCGATTAAAAAAAAA+TGG + Chr6:23780048-23780067 None:intergenic 30.0%
GTTAACTATTCCTCATCTTA+TGG - Chr6:23779086-23779105 MsG0680031638.01.T01:intron 30.0%
GTTGCAAAGAAAAGATACAT+AGG + Chr6:23780329-23780348 None:intergenic 30.0%
TAACAATGCTCCATAATGAT+AGG - Chr6:23782897-23782916 MsG0680031638.01.T01:intron 30.0%
TACACTTGTCATGAATTATG+TGG + Chr6:23783057-23783076 None:intergenic 30.0%
TCAAAGAATGCCTATCATTA+TGG + Chr6:23782910-23782929 None:intergenic 30.0%
TCTTAAATTATTAGCGGTGT+CGG - Chr6:23779408-23779427 MsG0680031638.01.T01:intron 30.0%
TGCTTTACCACTTTCATTTA+TGG - Chr6:23779772-23779791 MsG0680031638.01.T01:intron 30.0%
TTCAAGCAATGTAAGACATT+TGG - Chr6:23781050-23781069 MsG0680031638.01.T01:CDS 30.0%
! AAATTGCCATAACCATTTTG+TGG - Chr6:23781503-23781522 MsG0680031638.01.T01:intron 30.0%
! ATTTTGTGTACAATGTTTGC+AGG - Chr6:23780181-23780200 MsG0680031638.01.T01:intron 30.0%
! GATGTTATTGAACTGGTTTA+AGG - Chr6:23779518-23779537 MsG0680031638.01.T01:intron 30.0%
! GTTTAAAATGGCAGAGATAT+TGG + Chr6:23782775-23782794 None:intergenic 30.0%
! GTTTCTTTTGTAAACTCTCA+CGG - Chr6:23780687-23780706 MsG0680031638.01.T01:intron 30.0%
! TCTGATGTATTGTCTGTTTT+AGG - Chr6:23780935-23780954 MsG0680031638.01.T01:intron 30.0%
! TTAGTTTCTTTTCTGGACTT+CGG + Chr6:23782528-23782547 None:intergenic 30.0%
! TTTTGTGTACAATGTTTGCA+GGG - Chr6:23780182-23780201 MsG0680031638.01.T01:intron 30.0%
!! ATTTAAGGGGTGATTTTGAT+TGG - Chr6:23780382-23780401 MsG0680031638.01.T01:intron 30.0%
!! CTAGTAACAAAAGTATCACA+TGG + Chr6:23780783-23780802 None:intergenic 30.0%
!! TAAGTTTGTGAATTTTAGCC+TGG + Chr6:23783108-23783127 None:intergenic 30.0%
!! TTCACTTACTTTTCAACCTT+TGG - Chr6:23780004-23780023 MsG0680031638.01.T01:intron 30.0%
!! TTTCATTCTAGGTTGGTATT+AGG + Chr6:23783811-23783830 None:intergenic 30.0%
!!! AACAGCTTTTTTGCATACAT+TGG - Chr6:23781353-23781372 MsG0680031638.01.T01:intron 30.0%
!!! AACTCAACGTAGTTTTTTTG+CGG - Chr6:23780299-23780318 MsG0680031638.01.T01:intron 30.0%
!!! CAATGTTTTTAAAACTGGAC+CGG - Chr6:23781575-23781594 MsG0680031638.01.T01:intron 30.0%
!!! TTTCCAATTAGTTTTACCTG+AGG + Chr6:23782325-23782344 None:intergenic 30.0%
!!! TTTTTACGGCAACTTGTTAT+TGG - Chr6:23779973-23779992 MsG0680031638.01.T01:intron 30.0%
AAAGAGTTTGGGAGGATTTA+TGG + Chr6:23783568-23783587 None:intergenic 35.0%
AAATTCACAAACTTAGCTCC+AGG - Chr6:23783113-23783132 MsG0680031638.01.T01:intron 35.0%
AACCAAGTGATTCTAGTCTA+TGG + Chr6:23783653-23783672 None:intergenic 35.0%
AACTAAGGACTAAACTGTGA+GGG + Chr6:23780972-23780991 None:intergenic 35.0%
AAGAACATGTAAAGCTGCTT+CGG - Chr6:23782857-23782876 MsG0680031638.01.T01:intron 35.0%
AAGAGTTTGGGAGGATTTAT+GGG + Chr6:23783567-23783586 None:intergenic 35.0%
AATCAAGGCTAATAGGCAAA+AGG - Chr6:23780816-23780835 MsG0680031638.01.T01:intron 35.0%
AATCACATGTGTGACTTTAG+AGG - Chr6:23779276-23779295 MsG0680031638.01.T01:intron 35.0%
AATTCACTAAACTTAGCTCC+AGG - Chr6:23783087-23783106 MsG0680031638.01.T01:intron 35.0%
AGAACAATAGCCTTCAATCA+AGG - Chr6:23780801-23780820 MsG0680031638.01.T01:intron 35.0%
AGAATGGAGATAATGCACTT+TGG + Chr6:23783736-23783755 None:intergenic 35.0%
AGGTAATCGAGATGCATTTA+AGG - Chr6:23780367-23780386 MsG0680031638.01.T01:intron 35.0%
ATAGATTAGACTTACCATGC+CGG + Chr6:23784203-23784222 None:intergenic 35.0%
ATAGTAGCTGGTGGTTATTT+GGG - Chr6:23781250-23781269 MsG0680031638.01.T01:intron 35.0%
ATCAAGGCTAATAGGCAAAA+GGG - Chr6:23780817-23780836 MsG0680031638.01.T01:intron 35.0%
ATCCACCATATTTAAGCCAT+AGG - Chr6:23782811-23782830 MsG0680031638.01.T01:CDS 35.0%
ATGAGCCTATGGCTTAAATA+TGG + Chr6:23782819-23782838 None:intergenic 35.0%
ATGGAAACTTGGTTCATTTG+TGG + Chr6:23783634-23783653 None:intergenic 35.0%
ATTCCTCATCTTATGGCAAT+TGG - Chr6:23779093-23779112 MsG0680031638.01.T01:intron 35.0%
CAGACAATACATCAGAAAAG+CGG + Chr6:23780931-23780950 None:intergenic 35.0%
CTACAGCTTGTCATACATTA+TGG + Chr6:23782752-23782771 None:intergenic 35.0%
GACATCCATGAAAAATGCTA+AGG + Chr6:23784170-23784189 None:intergenic 35.0%
GATTCTAGTCTATGGAAACT+TGG + Chr6:23783645-23783664 None:intergenic 35.0%
GATTGGATATAAACTCCTAC+AGG - Chr6:23781288-23781307 MsG0680031638.01.T01:intron 35.0%
GCTTATATATGTCTTGGTGA+AGG - Chr6:23779881-23779900 MsG0680031638.01.T01:intron 35.0%
GGTAATCGAGATGCATTTAA+GGG - Chr6:23780368-23780387 MsG0680031638.01.T01:intron 35.0%
GTAACTATGGTACTCTTAAC+AGG + Chr6:23784130-23784149 None:intergenic 35.0%
GTAATCGAGATGCATTTAAG+GGG - Chr6:23780369-23780388 MsG0680031638.01.T01:intron 35.0%
TACGTCAGTTTGAGTGAAAT+TGG + Chr6:23780089-23780108 None:intergenic 35.0%
TATCCAATCAACACATTCCT+GGG - Chr6:23780509-23780528 MsG0680031638.01.T01:intron 35.0%
TCAATGATGAAGCACAGATA+TGG + Chr6:23779445-23779464 None:intergenic 35.0%
TCGAAATGGTGAAAGAGTTT+GGG + Chr6:23783579-23783598 None:intergenic 35.0%
TCTACAACAATATCAATCCC+AGG + Chr6:23780529-23780548 None:intergenic 35.0%
TGGACTTAGACTCTTTAGTA+AGG + Chr6:23780069-23780088 None:intergenic 35.0%
TGGAGTTGAATTGGGATATT+CGG + Chr6:23782713-23782732 None:intergenic 35.0%
TTACCAATTGCCATAAGATG+AGG + Chr6:23779099-23779118 None:intergenic 35.0%
TTACTTGGATTCTGTGTACT+GGG - Chr6:23780578-23780597 MsG0680031638.01.T01:intron 35.0%
TTAGACTTTGTCGACATTGA+TGG + Chr6:23783473-23783492 None:intergenic 35.0%
TTATCCAATCAACACATTCC+TGG - Chr6:23780508-23780527 MsG0680031638.01.T01:intron 35.0%
TTCCATAGACTAGAATCACT+TGG - Chr6:23783648-23783667 MsG0680031638.01.T01:intron 35.0%
TTCGAAATGGTGAAAGAGTT+TGG + Chr6:23783580-23783599 None:intergenic 35.0%
TTGCCTCAGGTAAAACTAAT+TGG - Chr6:23782319-23782338 MsG0680031638.01.T01:intron 35.0%
TTGCTTGAAAAACGAGACTA+AGG + Chr6:23781039-23781058 None:intergenic 35.0%
! AATCATAGTGGAGTGTGATA+AGG + Chr6:23778827-23778846 None:intergenic 35.0%
! ATCATAGTGGAGTGTGATAA+GGG + Chr6:23778826-23778845 None:intergenic 35.0%
! ATGGTTGCAAATTTTCGCAA+TGG + Chr6:23781480-23781499 None:intergenic 35.0%
! ATTTGGGATTCAAAACTGCA+TGG - Chr6:23781266-23781285 MsG0680031638.01.T01:intron 35.0%
! GATAGTATCATTGTTGTTGG+TGG - Chr6:23782021-23782040 MsG0680031638.01.T01:intron 35.0%
! GTTTTTGACAAGAAGGAAGA+AGG - Chr6:23779002-23779021 MsG0680031638.01.T01:CDS 35.0%
! TGGTCCTTAGTATTGGAATA+TGG - Chr6:23780220-23780239 MsG0680031638.01.T01:intron 35.0%
!! ACTTACTTTTCAACCTTTGG+TGG - Chr6:23780007-23780026 MsG0680031638.01.T01:intron 35.0%
!! ATGGAGCATTGTTATCATTG+TGG + Chr6:23782891-23782910 None:intergenic 35.0%
!! ATGTAAGACATTTGGTGTAC+CGG - Chr6:23781058-23781077 MsG0680031638.01.T01:CDS 35.0%
!! CTTACTTTTCAACCTTTGGT+GGG - Chr6:23780008-23780027 MsG0680031638.01.T01:intron 35.0%
!! GGTCACTTGACTTTTTCTTA+GGG + Chr6:23779577-23779596 None:intergenic 35.0%
!! GTCACTTGACTTTTTCTTAG+GGG + Chr6:23779576-23779595 None:intergenic 35.0%
!! GTGTTGATTGGATAAAATCC+TGG + Chr6:23780503-23780522 None:intergenic 35.0%
!! GTTAAGAGTACCATAGTTAC+CGG - Chr6:23784130-23784149 MsG0680031638.01.T01:intron 35.0%
!! TTACTTTTCAACCTTTGGTG+GGG - Chr6:23780009-23780028 MsG0680031638.01.T01:intron 35.0%
!! TTAGGCGTTAGTTTCTTTTC+TGG + Chr6:23782535-23782554 None:intergenic 35.0%
!! TTTGTTGGTGATGATTCACA+AGG - Chr6:23778961-23778980 MsG0680031638.01.T01:CDS 35.0%
!! TTTTGGGAGTGATTTGATTC+AGG - Chr6:23779680-23779699 MsG0680031638.01.T01:intron 35.0%
!!! ATATGTTTTGGTTGGAACAG+TGG - Chr6:23779730-23779749 MsG0680031638.01.T01:intron 35.0%
AAACACTGATCCGAATGATG+TGG - Chr6:23781806-23781825 MsG0680031638.01.T01:CDS 40.0%
AAACTAACGCCTAATTAGGC+AGG - Chr6:23782541-23782560 MsG0680031638.01.T01:CDS 40.0%
AAATGGTGAAAGAGTTTGGG+AGG + Chr6:23783576-23783595 None:intergenic 40.0%
AACTCTCACGGATTTGTCTA+AGG - Chr6:23780699-23780718 MsG0680031638.01.T01:intron 40.0%
AAGGTTCATCATGTTCATGG+AGG - Chr6:23778980-23778999 MsG0680031638.01.T01:CDS 40.0%
AAGTTTAATTGGCGCTCAAC+CGG - Chr6:23784247-23784266 MsG0680031638.01.T01:five_prime_UTR 40.0%
AATCATTCCATCTACCCCAA+AGG + Chr6:23781322-23781341 None:intergenic 40.0%
ACAAAACATCGAATCCTCTC+TGG - Chr6:23782977-23782996 MsG0680031638.01.T01:intron 40.0%
ACAGCAATGCAGATGAAATG+GGG + Chr6:23782079-23782098 None:intergenic 40.0%
AGACCCACTTTCAGCAATTA+TGG - Chr6:23780546-23780565 MsG0680031638.01.T01:intron 40.0%
AGCCTATGGCTTAAATATGG+TGG + Chr6:23782816-23782835 None:intergenic 40.0%
AGCCTTCAATCAAGGCTAAT+AGG - Chr6:23780809-23780828 MsG0680031638.01.T01:intron 40.0%
AGTCCTTAGTTCAAACACAC+CGG - Chr6:23780981-23781000 MsG0680031638.01.T01:CDS 40.0%
ATAATTCAGTGTCTGACACC+GGG + Chr6:23779381-23779400 None:intergenic 40.0%
ATCATTCCATCTACCCCAAA+GGG + Chr6:23781321-23781340 None:intergenic 40.0%
ATGAAGCACAGATATGGACA+CGG + Chr6:23779439-23779458 None:intergenic 40.0%
ATGGTATACTAGTCGTCTGT+TGG + Chr6:23782733-23782752 None:intergenic 40.0%
CAACATCAATGATTGCGATG+CGG + Chr6:23781529-23781548 None:intergenic 40.0%
CACAAGGTTCATCATGTTCA+TGG - Chr6:23778977-23778996 MsG0680031638.01.T01:CDS 40.0%
CATAATTCAGTGTCTGACAC+CGG + Chr6:23779382-23779401 None:intergenic 40.0%
CATAGTAGCTGGTGGTTATT+TGG - Chr6:23781249-23781268 MsG0680031638.01.T01:intron 40.0%
CCACTTTCATTTATGGTTGC+TGG - Chr6:23779779-23779798 MsG0680031638.01.T01:intron 40.0%
CCAGCAACCATAAATGAAAG+TGG + Chr6:23779782-23779801 None:intergenic 40.0%
CCGATTCAACTATGGTTCAA+CGG + Chr6:23781620-23781639 None:intergenic 40.0%
CCGTTGAACCATAGTTGAAT+CGG - Chr6:23781617-23781636 MsG0680031638.01.T01:intron 40.0%
CTTGTCTGATCAAGCTAGAT+TGG + Chr6:23783766-23783785 None:intergenic 40.0%
CTTTGTTCATCATTGCTTGG+TGG - Chr6:23782292-23782311 MsG0680031638.01.T01:intron 40.0%
GAACTAAGGACTAAACTGTG+AGG + Chr6:23780973-23780992 None:intergenic 40.0%
GACAGCAATGCAGATGAAAT+GGG + Chr6:23782080-23782099 None:intergenic 40.0%
GAGTGATTTGATTCAGGTGT+CGG - Chr6:23779686-23779705 MsG0680031638.01.T01:intron 40.0%
GCACTTTGTTCATCATTGCT+TGG - Chr6:23782289-23782308 MsG0680031638.01.T01:intron 40.0%
GCATCATTGTCTCTATGTTG+TGG - Chr6:23781989-23782008 MsG0680031638.01.T01:intron 40.0%
GGAAATTGAAAGTTCCAGAG+AGG + Chr6:23782994-23783013 None:intergenic 40.0%
GGATTCAAAACTGCATGGAT+TGG - Chr6:23781271-23781290 MsG0680031638.01.T01:intron 40.0%
GTTACTTGGATTCTGTGTAC+TGG - Chr6:23780577-23780596 MsG0680031638.01.T01:intron 40.0%
TCACACTCACACATATCAGA+TGG - Chr6:23783503-23783522 MsG0680031638.01.T01:intron 40.0%
TCAGTCATCCGATTCAACTA+TGG + Chr6:23781628-23781647 None:intergenic 40.0%
TCGTCTGTTGGAGTTGAATT+GGG + Chr6:23782721-23782740 None:intergenic 40.0%
TGAACCAGTTGAACCATTAG+CGG - Chr6:23781693-23781712 MsG0680031638.01.T01:intron 40.0%
TGACAGCAATGCAGATGAAA+TGG + Chr6:23782081-23782100 None:intergenic 40.0%
TGCTGTCAATGGAATGCAAT+GGG - Chr6:23782093-23782112 MsG0680031638.01.T01:intron 40.0%
TGGTACTCTTAACAGGAACA+TGG + Chr6:23784123-23784142 None:intergenic 40.0%
TGTGATTAGGCTGCACTTAT+TGG - Chr6:23780461-23780480 MsG0680031638.01.T01:intron 40.0%
TTCATCTGCATTGCTGTCAA+TGG - Chr6:23782082-23782101 MsG0680031638.01.T01:intron 40.0%
TTGCTGTCAATGGAATGCAA+TGG - Chr6:23782092-23782111 MsG0680031638.01.T01:intron 40.0%
TTGGTCCGGATAATTCTAAG+TGG + Chr6:23783139-23783158 None:intergenic 40.0%
! AATCCCAGGAATGTGTTGAT+TGG + Chr6:23780515-23780534 None:intergenic 40.0%
! AATCTTGATGGCTATGGCAA+GGG - Chr6:23784054-23784073 MsG0680031638.01.T01:CDS 40.0%
! AGAGGATTCGATGTTTTGTG+TGG + Chr6:23782976-23782995 None:intergenic 40.0%
! AGCTCTTTGTTATGCTGAGT+TGG - Chr6:23779820-23779839 MsG0680031638.01.T01:intron 40.0%
! ATTGCAAAACAACTTTGGGG+AGG + Chr6:23782383-23782402 None:intergenic 40.0%
! CATGGAGGTTTTTGACAAGA+AGG - Chr6:23778995-23779014 MsG0680031638.01.T01:CDS 40.0%
! CTTTGGTGTAGTGTGCTAAA+AGG + Chr6:23783719-23783738 None:intergenic 40.0%
! GATTGGTTGGTCCTTAGTAT+TGG - Chr6:23780213-23780232 MsG0680031638.01.T01:intron 40.0%
! GTATTGGAATATGGTATCGG+TGG - Chr6:23780229-23780248 MsG0680031638.01.T01:intron 40.0%
! TGCAGCCTTAGCATTTTTCA+TGG - Chr6:23784162-23784181 MsG0680031638.01.T01:intron 40.0%
!! CATTCTAGGTTGGTATTAGG+AGG + Chr6:23783808-23783827 None:intergenic 40.0%
!! CTACAGGGTATTTTCCCTTT+GGG - Chr6:23781304-23781323 MsG0680031638.01.T01:intron 40.0%
!! GAACTGATTTGAACCGCTAA+TGG + Chr6:23781709-23781728 None:intergenic 40.0%
!! GGGTCACTTGACTTTTTCTT+AGG + Chr6:23779578-23779597 None:intergenic 40.0%
!! TACAGGGTATTTTCCCTTTG+GGG - Chr6:23781305-23781324 MsG0680031638.01.T01:intron 40.0%
!! TGCCTATTAGCCTTGATTGA+AGG + Chr6:23780814-23780833 None:intergenic 40.0%
!!! GCTGGTGTATATGTTTTGGT+TGG - Chr6:23779722-23779741 MsG0680031638.01.T01:intron 40.0%
!!! TATTTTCCCTTTGGGGTAGA+TGG - Chr6:23781312-23781331 MsG0680031638.01.T01:intron 40.0%
!!! TGGTGCTGGTGTATATGTTT+TGG - Chr6:23779718-23779737 MsG0680031638.01.T01:intron 40.0%
AATGATGCTGCAATTCCCAG+TGG + Chr6:23781977-23781996 None:intergenic 45.0%
ACTCCGGTGTGTTTGAACTA+AGG + Chr6:23780987-23781006 None:intergenic 45.0%
ACTTTCAATTTCCACACGCG+AGG - Chr6:23783001-23783020 MsG0680031638.01.T01:intron 45.0%
AGTTTGGGAGGATTTATGGG+TGG + Chr6:23783564-23783583 None:intergenic 45.0%
ATGCGGCCACAAAATGGTTA+TGG + Chr6:23781512-23781531 None:intergenic 45.0%
ATGGATGTCTCTCAACTTGC+CGG - Chr6:23784181-23784200 MsG0680031638.01.T01:five_prime_UTR 45.0%
ATGTGACAGTGCTAGAACGA+GGG + Chr6:23780870-23780889 None:intergenic 45.0%
ATTGAACCATGACCTGTCTC+CGG + Chr6:23781597-23781616 None:intergenic 45.0%
CACTTCACAGCCACATCATT+CGG + Chr6:23781819-23781838 None:intergenic 45.0%
CCAAAGGGAAAATACCCTGT+AGG + Chr6:23781306-23781325 None:intergenic 45.0%
CCAGGCCACTTAGAATTATC+CGG - Chr6:23783131-23783150 MsG0680031638.01.T01:intron 45.0%
CCTCAAAGAGATTTGCCACT+GGG - Chr6:23781959-23781978 MsG0680031638.01.T01:intron 45.0%
CGTGTGTCTGAATAGCACAA+CGG - Chr6:23783237-23783256 MsG0680031638.01.T01:CDS 45.0%
CTAATTCTCTCAACCCACTC+CGG + Chr6:23781003-23781022 None:intergenic 45.0%
CTCTCAGCCAAGAATCTTGA+TGG - Chr6:23784042-23784061 MsG0680031638.01.T01:CDS 45.0%
CTGACAGAATGACCAGTTCA+TGG - Chr6:23781751-23781770 MsG0680031638.01.T01:intron 45.0%
GAACTGGTCATTCTGTCAGT+TGG + Chr6:23781750-23781769 None:intergenic 45.0%
GACTTTGTCGACATTGATGG+AGG + Chr6:23783470-23783489 None:intergenic 45.0%
GAGGATTTATGGGTGGATCA+AGG + Chr6:23783557-23783576 None:intergenic 45.0%
GATTAGGCTGCACTTATTGG+AGG - Chr6:23780464-23780483 MsG0680031638.01.T01:intron 45.0%
GCCATAGCCATCAAGATTCT+TGG + Chr6:23784052-23784071 None:intergenic 45.0%
GTACAATGTTTGCAGGGTTG+TGG - Chr6:23780188-23780207 MsG0680031638.01.T01:intron 45.0%
GTCGTCTGTTGGAGTTGAAT+TGG + Chr6:23782722-23782741 None:intergenic 45.0%
GTTGCTACACCTGCCTAATT+AGG + Chr6:23782553-23782572 None:intergenic 45.0%
TAGTTCAAACACACCGGAGT+GGG - Chr6:23780987-23781006 MsG0680031638.01.T01:CDS 45.0%
TATGTGTTCTATGGTGCGCT+AGG + Chr6:23783606-23783625 None:intergenic 45.0%
TCATGGAGTGCAACTTGTCA+AGG - Chr6:23779062-23779081 MsG0680031638.01.T01:intron 45.0%
TCCTCAAAGAGATTTGCCAC+TGG - Chr6:23781958-23781977 MsG0680031638.01.T01:intron 45.0%
TCTGTGTACTGGGATCAAAG+AGG - Chr6:23780588-23780607 MsG0680031638.01.T01:intron 45.0%
TGAACCGCTAATGGTTCAAC+TGG + Chr6:23781700-23781719 None:intergenic 45.0%
TGACCAGTTCATGGTTCAAC+CGG - Chr6:23781760-23781779 MsG0680031638.01.T01:intron 45.0%
TGATAAGCACTTCCAGCAGA+AGG + Chr6:23779857-23779876 None:intergenic 45.0%
TTAGTTCAAACACACCGGAG+TGG - Chr6:23780986-23781005 MsG0680031638.01.T01:CDS 45.0%
TTATACCTCTTCAGCAGTGC+TGG + Chr6:23781393-23781412 None:intergenic 45.0%
TTGTCGACATTGATGGAGGT+TGG + Chr6:23783466-23783485 None:intergenic 45.0%
TTTGCAGGGTTGTGGTTGAT+TGG - Chr6:23780196-23780215 MsG0680031638.01.T01:intron 45.0%
TTTGGTTGGAACAGTGGCAA+GGG - Chr6:23779736-23779755 MsG0680031638.01.T01:intron 45.0%
! CGTTGTGCTATTCAGACACA+CGG + Chr6:23783239-23783258 None:intergenic 45.0%
! GAATCTTGATGGCTATGGCA+AGG - Chr6:23784053-23784072 MsG0680031638.01.T01:CDS 45.0%
! GCCAAGAATCTTGATGGCTA+TGG - Chr6:23784048-23784067 MsG0680031638.01.T01:CDS 45.0%
! TGCAGATGAAATGGGGTGTT+AGG + Chr6:23782072-23782091 None:intergenic 45.0%
! TTTAAAACTGGACCGGAGAC+AGG - Chr6:23781582-23781601 MsG0680031638.01.T01:intron 45.0%
!! CCTACAGGGTATTTTCCCTT+TGG - Chr6:23781303-23781322 MsG0680031638.01.T01:intron 45.0%
!! CTAGGTTGGTATTAGGAGGT+TGG + Chr6:23783804-23783823 None:intergenic 45.0%
!! TTTTGGTTGGAACAGTGGCA+AGG - Chr6:23779735-23779754 MsG0680031638.01.T01:intron 45.0%
!!! TAATTTATTCTTTTTATAAA+TGG - Chr6:23781099-23781118 MsG0680031638.01.T01:CDS 5.0%
!!! TATTTAACTATTTAAATTTT+GGG - Chr6:23779664-23779683 MsG0680031638.01.T01:intron 5.0%
!!! TTATTTAACTATTTAAATTT+TGG - Chr6:23779663-23779682 MsG0680031638.01.T01:intron 5.0%
ACCTAACCGAACAGTGCAAC+CGG + Chr6:23781782-23781801 None:intergenic 50.0%
AGCAAACTATGCGTGCGAAG+AGG + Chr6:23782646-23782665 None:intergenic 50.0%
AGCAACAAGGCCGGTAACTA+TGG + Chr6:23784143-23784162 None:intergenic 50.0%
ATGCTAAGGCTGCAGCAACA+AGG + Chr6:23784156-23784175 None:intergenic 50.0%
ATGTGGCTGTGAAGTGGTTG+CGG - Chr6:23781823-23781842 MsG0680031638.01.T01:CDS 50.0%
ATTGCGATGCGGCCACAAAA+TGG + Chr6:23781518-23781537 None:intergenic 50.0%
CAACCGGTTGAACCATGAAC+TGG + Chr6:23781766-23781785 None:intergenic 50.0%
CAGGGTTGTGGTTGATTGGT+TGG - Chr6:23780200-23780219 MsG0680031638.01.T01:intron 50.0%
CCCAGTGGCAAATCTCTTTG+AGG + Chr6:23781962-23781981 None:intergenic 50.0%
CCGGATAATTCTAAGTGGCC+TGG + Chr6:23783134-23783153 None:intergenic 50.0%
CGAATGATGTGGCTGTGAAG+TGG - Chr6:23781817-23781836 MsG0680031638.01.T01:CDS 50.0%
CGCACCATAGAACACATAGC+TGG - Chr6:23783608-23783627 MsG0680031638.01.T01:intron 50.0%
GATGTGACAGTGCTAGAACG+AGG + Chr6:23780871-23780890 None:intergenic 50.0%
GCAAACTATGCGTGCGAAGA+GGG + Chr6:23782645-23782664 None:intergenic 50.0%
GGGGTAGATGGAATGATTGC+TGG - Chr6:23781324-23781343 MsG0680031638.01.T01:intron 50.0%
GTGCGCTAGGTTGTTCGAAA+TGG + Chr6:23783593-23783612 None:intergenic 50.0%
GTGGCCAGCTATGTGTTCTA+TGG + Chr6:23783615-23783634 None:intergenic 50.0%
GTTCAACCGGTTGCACTGTT+CGG - Chr6:23781773-23781792 MsG0680031638.01.T01:CDS 50.0%
TAATGTTTGGACCTCGCGTG+TGG + Chr6:23783015-23783034 None:intergenic 50.0%
TATGAAGCACGGACACTCCT+TGG - Chr6:23779344-23779363 MsG0680031638.01.T01:intron 50.0%
TCGACATTGATGGAGGTTGG+CGG + Chr6:23783463-23783482 None:intergenic 50.0%
TCGTGGCATAACCCCCAATT+TGG - Chr6:23780264-23780283 MsG0680031638.01.T01:intron 50.0%
! CTCGGAATCGAGCATTGTCT+CGG + Chr6:23780152-23780171 None:intergenic 50.0%
! TAAGGCGTCTCAGTGAGTTG+AGG - Chr6:23780717-23780736 MsG0680031638.01.T01:intron 50.0%
! TTGATGGCTATGGCAAGGGA+CGG - Chr6:23784058-23784077 MsG0680031638.01.T01:CDS 50.0%
!! GCTAGTCGTTTTCCTTCTGC+TGG - Chr6:23779842-23779861 MsG0680031638.01.T01:intron 50.0%
!! TCAGGTGTCGGTGCAACAAT+TGG - Chr6:23779698-23779717 MsG0680031638.01.T01:intron 50.0%
ACAGTGGCAAGGGAACATGC+TGG - Chr6:23779746-23779765 MsG0680031638.01.T01:intron 55.0%
ACCGGTTGCACTGTTCGGTT+AGG - Chr6:23781778-23781797 MsG0680031638.01.T01:CDS 55.0%
AGCCATAGGCTCATCGCAGT+TGG - Chr6:23782825-23782844 MsG0680031638.01.T01:CDS 55.0%
AGTTGCCAGCACTGCTGAAG+AGG - Chr6:23781385-23781404 MsG0680031638.01.T01:intron 55.0%
CCCTCATGAAGAGCTTGGTC+CGG + Chr6:23783153-23783172 None:intergenic 55.0%
CCGGACCAAGCTCTTCATGA+GGG - Chr6:23783150-23783169 MsG0680031638.01.T01:intron 55.0%
CGGACCAAGCTCTTCATGAG+GGG - Chr6:23783151-23783170 MsG0680031638.01.T01:intron 55.0%
GACACCACGATCACAGTTGC+AGG - Chr6:23781862-23781881 MsG0680031638.01.T01:CDS 55.0%
GCACGGACACTCCTTGGATT+AGG - Chr6:23779350-23779369 MsG0680031638.01.T01:intron 55.0%
GGCTGCACTTATTGGAGGTG+TGG - Chr6:23780469-23780488 MsG0680031638.01.T01:intron 55.0%
GTCCAACTGCGATGAGCCTA+TGG + Chr6:23782830-23782849 None:intergenic 55.0%
GTCGGTGCAACAATTGGTGC+TGG - Chr6:23779704-23779723 MsG0680031638.01.T01:intron 55.0%
TAAGGCTGCAGCAACAAGGC+CGG + Chr6:23784152-23784171 None:intergenic 55.0%
TCCGGACCAAGCTCTTCATG+AGG - Chr6:23783149-23783168 MsG0680031638.01.T01:intron 55.0%
TGTCTCTCAACTTGCCGGCA+TGG - Chr6:23784186-23784205 MsG0680031638.01.T01:five_prime_UTR 55.0%
! GCTTGGTGGAATGTTGCCTC+AGG - Chr6:23782306-23782325 MsG0680031638.01.T01:intron 55.0%
! TCCTTGGATTAGGCGTGTCC+CGG - Chr6:23779360-23779379 MsG0680031638.01.T01:intron 55.0%
ACCGGGACACGCCTAATCCA+AGG + Chr6:23779364-23779383 None:intergenic 60.0%
ACGGCCTGCAACTGTGATCG+TGG + Chr6:23781869-23781888 None:intergenic 60.0%
ACTGGACCGGAGACAGGTCA+TGG - Chr6:23781588-23781607 MsG0680031638.01.T01:intron 60.0%
CCAAGCTCTTCATGAGGGGC+TGG - Chr6:23783155-23783174 MsG0680031638.01.T01:intron 60.0%
CCAGCCCCTCATGAAGAGCT+TGG + Chr6:23783158-23783177 None:intergenic 60.0%
! GGAGGTGTGGACAACTTGCC+AGG - Chr6:23780482-23780501 MsG0680031638.01.T01:intron 60.0%
GGTGGAGCTGCTGTTGCTCG+TGG - Chr6:23780247-23780266 MsG0680031638.01.T01:intron 65.0%
CGGAGGGCTGACCCCACCAA+AGG + Chr6:23780023-23780042 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 23778803 23784273 23778803 ID=MsG0680031638.01;Name=MsG0680031638.01
Chr6 mRNA 23778803 23784273 23778803 ID=MsG0680031638.01.T01;Parent=MsG0680031638.01;Name=MsG0680031638.01.T01;_AED=0.49;_eAED=0.51;_QI=131|0.87|0.77|1|0.87|0.77|9|0|387
Chr6 exon 23778803 23779027 23778803 ID=MsG0680031638.01.T01:exon:14759;Parent=MsG0680031638.01.T01
Chr6 exon 23780749 23780814 23780749 ID=MsG0680031638.01.T01:exon:14758;Parent=MsG0680031638.01.T01
Chr6 exon 23780957 23781126 23780957 ID=MsG0680031638.01.T01:exon:14757;Parent=MsG0680031638.01.T01
Chr6 exon 23781766 23781883 23781766 ID=MsG0680031638.01.T01:exon:14756;Parent=MsG0680031638.01.T01
Chr6 exon 23782467 23782606 23782467 ID=MsG0680031638.01.T01:exon:14755;Parent=MsG0680031638.01.T01
Chr6 exon 23782791 23782873 23782791 ID=MsG0680031638.01.T01:exon:14754;Parent=MsG0680031638.01.T01
Chr6 exon 23783173 23783374 23783173 ID=MsG0680031638.01.T01:exon:14753;Parent=MsG0680031638.01.T01
Chr6 exon 23783962 23784148 23783962 ID=MsG0680031638.01.T01:exon:14752;Parent=MsG0680031638.01.T01
Chr6 exon 23784170 23784273 23784170 ID=MsG0680031638.01.T01:exon:14751;Parent=MsG0680031638.01.T01
Chr6 five_prime_UTR 23784170 23784273 23784170 ID=MsG0680031638.01.T01:five_prime_utr;Parent=MsG0680031638.01.T01
Chr6 five_prime_UTR 23784122 23784148 23784122 ID=MsG0680031638.01.T01:five_prime_utr;Parent=MsG0680031638.01.T01
Chr6 CDS 23783962 23784121 23783962 ID=MsG0680031638.01.T01:cds;Parent=MsG0680031638.01.T01
Chr6 CDS 23783173 23783374 23783173 ID=MsG0680031638.01.T01:cds;Parent=MsG0680031638.01.T01
Chr6 CDS 23782791 23782873 23782791 ID=MsG0680031638.01.T01:cds;Parent=MsG0680031638.01.T01
Chr6 CDS 23782467 23782606 23782467 ID=MsG0680031638.01.T01:cds;Parent=MsG0680031638.01.T01
Chr6 CDS 23781766 23781883 23781766 ID=MsG0680031638.01.T01:cds;Parent=MsG0680031638.01.T01
Chr6 CDS 23780957 23781126 23780957 ID=MsG0680031638.01.T01:cds;Parent=MsG0680031638.01.T01
Chr6 CDS 23780749 23780814 23780749 ID=MsG0680031638.01.T01:cds;Parent=MsG0680031638.01.T01
Chr6 CDS 23778803 23779027 23778803 ID=MsG0680031638.01.T01:cds;Parent=MsG0680031638.01.T01
Gene Sequence

>MsG0680031638.01.T01

ATGGGTTTTGTTGGTGATGATTCACAAGGTTCATCATGTTCATGGAGGTTTTTGACAAGAAGGAAGAAGGTTGATAATTCTCATGTTGAGAATAGCAATAATTCTCATCATGGAGTGCAACTTGTCAAGGAGTTAACTATTCCTCATCTTATGGCAATTGGTGTCGGTGCAACAATTGGTGCTGGTGTATATGTTTTGGTTGGAACAGTGGCAAGGGAACATGCTGGACCTGCTTTACCACTTTCATTTATGGTTGCTGGAATAGCAGCAGCACTTTCAGCTCTTTGTTATGCTGAGTTGGCTAGTCGTTTTCCTTCTGCTGGAAGTGCTTATCACTATGCTTATATATGTCTTGGTGAAGGGGTTGTGGTTGATTGGTTGGTCCTTAGTATTGGAATATGGTATCGGTGGAGCTGCTGTTGCTCGTGGCATAACCCCCAATTTGGCTGCACTTATTGGAGGTGTGGACAACTTGCCAGGATTTTATCCAATCAACACATTCCTGGGATTGATATTGTTGTAGACCCACTTTCAGCAATTATGGTATTCATTGTTACTTGGATTCTGTGTACTGGGATCAAAGAGAGTACAATGATACAAAGTATAGTGACATCAGTGAATATATGTGCTTTGATATTTATCATAGTAGCTGGTGGTTATTTGGGATTCAAAACTGCATGGATTGGATATAAACTCCTACAGGGTGAAAAATCCTCAAAGAGATTTGCCACTGGGAATTGCAGCATCATTGTCTCTATGTTGTGGATTGTATATGATAGTATCATTGTTGTTGGTGGTTTAGTTCCTTACTATGATATCAATCCTAACACCCCATTTCATCTGCATTGCTGTCAATGGAATGCAATGGGCAGCATACATTATAAATGCTGGGGCTATACAGCACTTTGTTCATCATTGCTTGGTGGAATGTTGCCTCAGCCAAGAATCTTGATGGCTATGGCAAGGGACGGATTGCTGCCACCATTTTTTTCTGATATAAATAAGCACAGCCATGTTCCTGTTAAGAGTACCATAGTTACCGGCCTTGTTGCTGCAGCCTTAGCATTTTTCATGGATGTCTCTCAACTTGCCGGCATGGTAAGTCTAATCTATATTGCAGTTGTTAGGATTCAACTGAAGTTTAATTGGCGCTCAACCGGTTGA
Protein sequence

>MsG0680031638.01.T01

MGFVGDDSQGSSCSWRFLTRRKKVDNSHVENSNNSHHGVQLVKELTIPHLMAIGVGATIGAGVYVLVGTVAREHAGPALPLSFMVAGIAAALSALCYAELASRFPSAGSAYHYAYICLGEGVVVDWLVLSIGIWYRWSCCCSWHNPQFGCTYWRCGQLARILSNQHIPGIDIVVDPLSAIMVFIVTWILCTGIKESTMIQSIVTSVNICALIFIIVAGGYLGFKTAWIGYKLLQGEKSSKRFATGNCSIIVSMLWIVYDSIIVVGGLVPYYDINPNTPFHLHCCQWNAMGSIHYKCWGYTALCSSLLGGMLPQPRILMAMARDGLLPPFFSDINKHSHVPVKSTIVTGLVAAALAFFMDVSQLAGMVSLIYIAVVRIQLKFNWRSTG*