AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680031783.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031783.01.T01 MTR_5g098850 85.149 404 53 3 27 426 151 551 0.0 712
MsG0680031783.01.T01 MTR_6g036640 85.135 74 11 0 27 100 74 147 2.31e-35 128
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031783.01.T01 AT1G24290 70.380 395 94 4 27 418 138 512 0.0 580

Find 117 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCAAGTTAATGAAGGAAAT+TGG 0.159046 6:-26649360 MsG0680031783.01.T01:CDS
TACCAATATTGTCACTTTAT+AGG 0.250309 6:-26649543 MsG0680031783.01.T01:CDS
AGAGACAAAGCTATAGAAAT+TGG 0.252863 6:+26650337 None:intergenic
TGCACAATGTGTTGCTTACT+TGG 0.255670 6:-26649496 MsG0680031783.01.T01:CDS
CTATAAACAACTATGGATTT+AGG 0.288030 6:+26649465 None:intergenic
TACCCGAGCAGCAGCATTTA+CGG 0.294583 6:+26649866 None:intergenic
CCCAATTTCCTTCATTAACT+TGG 0.345844 6:+26649359 None:intergenic
AAGGGTTCAAATTCCTCAAT+TGG 0.368296 6:-26649266 MsG0680031783.01.T01:CDS
AATCGCTCTATAAACAACTA+TGG 0.374567 6:+26649458 None:intergenic
TAGGTTTAATAAATCTCAAC+AGG 0.385119 6:-26650204 MsG0680031783.01.T01:CDS
ATGTGTTGCTTACTTGGCTT+TGG 0.387237 6:-26649490 MsG0680031783.01.T01:CDS
TTCCTATAAAGTGACAATAT+TGG 0.387242 6:+26649541 None:intergenic
TGCAAGTGAGGATGTTGGTT+TGG 0.392632 6:-26649601 MsG0680031783.01.T01:CDS
TCTTTGTTGATGAAGTTCAT+AGG 0.400578 6:-26650223 MsG0680031783.01.T01:CDS
GGGTGGAACCCACAGGATAA+TGG 0.403410 6:+26650409 None:intergenic
CCAAGTTAATGAAGGAAATT+GGG 0.404482 6:-26649359 MsG0680031783.01.T01:CDS
TTAGTTCAAAGCCTTGGTTT+TGG 0.406250 6:-26649999 MsG0680031783.01.T01:CDS
ATCTGGTTGAAGAGGGTTAA+GGG 0.415229 6:+26650070 None:intergenic
GGCACTGGTAAGACAACTAT+TGG 0.425302 6:-26650386 MsG0680031783.01.T01:CDS
TCGGGTACAGCAGGATAATC+AGG 0.426550 6:-26649850 MsG0680031783.01.T01:CDS
TACTTGCCACCCTCCCTTCA+AGG 0.428941 6:-26649285 MsG0680031783.01.T01:CDS
ATTTCCTTCATTAACTTGGT+TGG 0.432397 6:+26649363 None:intergenic
ATGCCGATGCAGCGATATAT+TGG 0.432539 6:-26649686 MsG0680031783.01.T01:CDS
ATCGATGGAGATGGAACAAC+TGG 0.438887 6:-26650827 None:intergenic
GATTCAGAAGGATTCTTGTC+AGG 0.442394 6:+26649243 None:intergenic
TTCTTACCCGTCATTGAAGA+TGG 0.442501 6:-26650176 MsG0680031783.01.T01:CDS
TGAGGAATTTGAACCCTTGA+AGG 0.447413 6:+26649271 None:intergenic
TGCTGCTGCTCGGGTACAGC+AGG 0.450131 6:-26649859 MsG0680031783.01.T01:CDS
ATAGTTGTTTATAGAGCGAT+TGG 0.452433 6:-26649456 MsG0680031783.01.T01:CDS
AGAAGCAAAACGAGGTGATC+TGG 0.455675 6:+26650053 None:intergenic
TGACTCGCTCACTACCTTCT+CGG 0.458184 6:+26649428 None:intergenic
TTCCGTAAATGCTGCTGCTC+GGG 0.461633 6:-26649868 MsG0680031783.01.T01:CDS
ATGGAAGGAGACGTTTGTGT+TGG 0.466962 6:+26650428 None:intergenic
ACCAACGCTAACATCAACTT+TGG 0.469085 6:+26649965 None:intergenic
TTCATCAACAAAGAGAATAG+TGG 0.469671 6:+26650232 None:intergenic
CTTCCGTAAATGCTGCTGCT+CGG 0.472071 6:-26649869 MsG0680031783.01.T01:CDS
GATGGAAGCATTGTCTTCGT+TGG 0.474789 6:-26650158 MsG0680031783.01.T01:CDS
ATGAAGAAGGGTTGTCAGGC+GGG 0.475333 6:+26649316 None:intergenic
TTAATGAAGGAAATTGGGTA+TGG 0.476908 6:-26649354 MsG0680031783.01.T01:CDS
GATCTGGTTGAAGAGGGTTA+AGG 0.481458 6:+26650069 None:intergenic
AATAGTTGTCTTACCAGTGC+CGG 0.486207 6:+26650388 None:intergenic
AAGGGGTGCCTCTTCATCTC+AGG 0.488456 6:-26649392 MsG0680031783.01.T01:CDS
AAAGGCTTAGTTCAAAGCCT+TGG 0.488924 6:-26650005 MsG0680031783.01.T01:CDS
TCGTGTTGCTTTGAATGTAT+TGG 0.494943 6:-26649898 MsG0680031783.01.T01:CDS
TTGGATTGTAGAACAAAGAA+TGG 0.497482 6:+26650447 None:intergenic
GGTGTGATCAAATGAAAAGA+AGG 0.499418 6:+26650119 None:intergenic
GATTCTTGTCAGGCCAATTG+AGG 0.501017 6:+26649253 None:intergenic
ACAGCTTGATTAAGAGCTAA+AGG 0.502282 6:+26649573 None:intergenic
TGTGATGAAGAAGGGTTGTC+AGG 0.505136 6:+26649312 None:intergenic
AAGGTAGTGAGCGAGTCAAT+TGG 0.508452 6:-26649423 MsG0680031783.01.T01:CDS
CATCTTGCTTATGACAAAGC+TGG 0.508953 6:-26649762 MsG0680031783.01.T01:CDS
ATATTGCACGTAGGCTTGTA+CGG 0.510285 6:-26649626 MsG0680031783.01.T01:CDS
ATCGGCATCACTTCCCCTCA+TGG 0.510602 6:+26649701 None:intergenic
AAGTAGTTATGTGATGAAGA+AGG 0.511138 6:+26649303 None:intergenic
TTCATAGCTAACAATTGTGA+TGG 0.512312 6:-26649927 MsG0680031783.01.T01:CDS
CTGTGGGTTCCACCCGGCAC+TGG 0.518832 6:-26650401 MsG0680031783.01.T01:CDS
CGTCTCCTTCCATTATCCTG+TGG 0.519799 6:-26650418 MsG0680031783.01.T01:CDS
GTCTCCTTCCATTATCCTGT+GGG 0.519982 6:-26650417 MsG0680031783.01.T01:CDS
GCTTGTACGGTTTGCAAGTG+AGG 0.522716 6:-26649613 MsG0680031783.01.T01:CDS
AGTAGTTATGTGATGAAGAA+GGG 0.523087 6:+26649304 None:intergenic
GTTGAAGAGGGTTAAGGGTA+AGG 0.524244 6:+26650075 None:intergenic
AAGGAAATTGGGTATGGGAA+GGG 0.524375 6:-26649348 MsG0680031783.01.T01:CDS
AAGAATCCTTCTGAATCTGA+TGG 0.526116 6:-26649237 MsG0680031783.01.T01:CDS
TGGAATTGTTTGCAAGGAGA+TGG 0.530959 6:+26650467 None:intergenic
GCAGGATAATCAGGAATTCA+AGG 0.536254 6:-26649841 MsG0680031783.01.T01:CDS
TCCAAAGTTGATGTTAGCGT+TGG 0.537198 6:-26649966 MsG0680031783.01.T01:CDS
ATCTTTAACGCCTCTAGTAA+CGG 0.538103 6:+26650307 None:intergenic
AGCGATTGGAGCTGCCGAGA+AGG 0.538361 6:-26649442 MsG0680031783.01.T01:CDS
TGCACCAACCAAGTTAATGA+AGG 0.543892 6:-26649367 MsG0680031783.01.T01:CDS
GAGTCAATTGGACAAAATGA+AGG 0.545427 6:-26649411 MsG0680031783.01.T01:CDS
CAGTGCCGGGTGGAACCCAC+AGG 0.548856 6:+26650402 None:intergenic
TGTTAGTGTGGAGGATGCTA+AGG 0.550008 6:-26649802 MsG0680031783.01.T01:CDS
ATAGTTGTCTTACCAGTGCC+GGG 0.552855 6:+26650389 None:intergenic
AAAGAATGGAATTGTTTGCA+AGG 0.553928 6:+26650461 None:intergenic
TCTTTATCTGCCGTTACTAG+AGG 0.554095 6:-26650317 MsG0680031783.01.T01:CDS
GAGGAATTTGAACCCTTGAA+GGG 0.555830 6:+26649272 None:intergenic
TGCAAGAATGACATTGCACT+CGG 0.556737 6:+26649515 None:intergenic
AATTTGAACCCTTGAAGGGA+GGG 0.557084 6:+26649276 None:intergenic
ATTATCCTGTGGGTTCCACC+CGG 0.557295 6:-26650407 MsG0680031783.01.T01:CDS
ATGCTTCCATCTTCAATGAC+GGG 0.558478 6:+26650170 None:intergenic
ACGAGGTGATCTGGTTGAAG+AGG 0.560590 6:+26650062 None:intergenic
CGATGCAGCGATATATTGGT+TGG 0.563823 6:-26649682 MsG0680031783.01.T01:CDS
ATAAGGAAGATCGATGGAGA+TGG 0.568907 6:-26650836 None:intergenic
GTGTGATCAAATGAAAAGAA+GGG 0.571183 6:+26650120 None:intergenic
ACTTGCCACCCTCCCTTCAA+GGG 0.572781 6:-26649284 MsG0680031783.01.T01:CDS
TACTGTCAGTGTTAGTGTGG+AGG 0.579624 6:-26649811 MsG0680031783.01.T01:CDS
CAACCAATATATCGCTGCAT+CGG 0.580346 6:+26649683 None:intergenic
CGAGGTGATCTGGTTGAAGA+GGG 0.583550 6:+26650063 None:intergenic
TAATGAAGGAAATTGGGTAT+GGG 0.583901 6:-26649353 MsG0680031783.01.T01:CDS
GAAGGAAATTGGGTATGGGA+AGG 0.584662 6:-26649349 MsG0680031783.01.T01:CDS
AGAATCCTTCTGAATCTGAT+GGG 0.586846 6:-26649236 MsG0680031783.01.T01:CDS
AATGCTTCCATCTTCAATGA+CGG 0.591472 6:+26650169 None:intergenic
GAATTTGAACCCTTGAAGGG+AGG 0.594352 6:+26649275 None:intergenic
GGTGCATTCCTGAGATGAAG+AGG 0.598885 6:+26649384 None:intergenic
AGTCAATTGGACAAAATGAA+GGG 0.599380 6:-26649410 MsG0680031783.01.T01:CDS
TGTTACTGTCAGTGTTAGTG+TGG 0.611778 6:-26649814 MsG0680031783.01.T01:CDS
ACACGACAACGAGACAAAAG+AGG 0.611814 6:+26650098 None:intergenic
TGCACTACACAAGTCCATGA+GGG 0.616466 6:-26649715 MsG0680031783.01.T01:CDS
TTGAACCCTTGAAGGGAGGG+TGG 0.616931 6:+26649279 None:intergenic
CGGTTTGCAAGTGAGGATGT+TGG 0.621056 6:-26649606 MsG0680031783.01.T01:CDS
TAGTGTGGAGGATGCTAAGG+AGG 0.621804 6:-26649799 MsG0680031783.01.T01:CDS
GATGAAGAAGGGTTGTCAGG+CGG 0.641855 6:+26649315 None:intergenic
AGCCTACGTGCAATATAAAG+CGG 0.642004 6:+26649633 None:intergenic
TGTCTGTATCAGCAACAGCA+CGG 0.645551 6:+26650027 None:intergenic
GCAAGAATGACATTGCACTC+GGG 0.647939 6:+26649516 None:intergenic
GGAACCCACAGGATAATGGA+AGG 0.654742 6:+26650413 None:intergenic
GTCAATTGGACAAAATGAAG+GGG 0.660344 6:-26649409 MsG0680031783.01.T01:CDS
GTGCACTACACAAGTCCATG+AGG 0.672259 6:-26649716 MsG0680031783.01.T01:CDS
TGGTTGGCAAGAATGCTACA+AGG 0.677604 6:-26649666 MsG0680031783.01.T01:CDS
GCACTACACAAGTCCATGAG+GGG 0.678335 6:-26649714 MsG0680031783.01.T01:CDS
GCTGTTGCTGATACAGACAA+AGG 0.680111 6:-26650023 MsG0680031783.01.T01:CDS
CACGGTTGAGAAGCAAAACG+AGG 0.699094 6:+26650045 None:intergenic
AAGAACCAGAACCAAAACCA+AGG 0.713685 6:+26649988 None:intergenic
AGCCGCTTTATATTGCACGT+AGG 0.726891 6:-26649635 MsG0680031783.01.T01:CDS
GTTGTCTTACCAGTGCCGGG+TGG 0.729122 6:+26650392 None:intergenic
TGTTAGCGTTGGTAACAATG+TGG 0.730235 6:-26649955 MsG0680031783.01.T01:CDS
TTGGCAAGAATGCTACAAGG+AGG 0.761164 6:-26649663 MsG0680031783.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! CTATAAACAACTATGGATTT+AGG + Chr6:26650594-26650613 None:intergenic 25.0%
! TAGGTTTAATAAATCTCAAC+AGG - Chr6:26649852-26649871 MsG0680031783.01.T01:CDS 25.0%
! TTCCTATAAAGTGACAATAT+TGG + Chr6:26650518-26650537 None:intergenic 25.0%
!!! TACCAATATTGTCACTTTAT+AGG - Chr6:26650513-26650532 MsG0680031783.01.T01:intron 25.0%
AAAGAATGGAATTGTTTGCA+AGG + Chr6:26649598-26649617 None:intergenic 30.0%
AAGTAGTTATGTGATGAAGA+AGG + Chr6:26650756-26650775 None:intergenic 30.0%
AATCGCTCTATAAACAACTA+TGG + Chr6:26650601-26650620 None:intergenic 30.0%
ACCAAGTTAATGAAGGAAAT+TGG - Chr6:26650696-26650715 MsG0680031783.01.T01:intron 30.0%
AGAAATGATTGAGTTTAGGT+TGG + Chr6:26649400-26649419 None:intergenic 30.0%
AGAGACAAAGCTATAGAAAT+TGG + Chr6:26649722-26649741 None:intergenic 30.0%
AGTAGTTATGTGATGAAGAA+GGG + Chr6:26650755-26650774 None:intergenic 30.0%
AGTCAATTGGACAAAATGAA+GGG - Chr6:26650646-26650665 MsG0680031783.01.T01:intron 30.0%
ATAGTTGTTTATAGAGCGAT+TGG - Chr6:26650600-26650619 MsG0680031783.01.T01:intron 30.0%
CCAAGTTAATGAAGGAAATT+GGG - Chr6:26650697-26650716 MsG0680031783.01.T01:intron 30.0%
GGAAAGCAAAAAATGATGAA+CGG + Chr6:26649379-26649398 None:intergenic 30.0%
GTGTGATCAAATGAAAAGAA+GGG + Chr6:26649939-26649958 None:intergenic 30.0%
TAATGAAGGAAATTGGGTAT+GGG - Chr6:26650703-26650722 MsG0680031783.01.T01:intron 30.0%
TGGAAGAAATGATTGAGTTT+AGG + Chr6:26649404-26649423 None:intergenic 30.0%
TTAATGAAGGAAATTGGGTA+TGG - Chr6:26650702-26650721 MsG0680031783.01.T01:intron 30.0%
TTCATAGCTAACAATTGTGA+TGG - Chr6:26650129-26650148 MsG0680031783.01.T01:CDS 30.0%
TTCATCAACAAAGAGAATAG+TGG + Chr6:26649827-26649846 None:intergenic 30.0%
TTGGATTGTAGAACAAAGAA+TGG + Chr6:26649612-26649631 None:intergenic 30.0%
! ATTTCCTTCATTAACTTGGT+TGG + Chr6:26650696-26650715 None:intergenic 30.0%
! TCTTTGTTGATGAAGTTCAT+AGG - Chr6:26649833-26649852 MsG0680031783.01.T01:CDS 30.0%
AAGAATCCTTCTGAATCTGA+TGG - Chr6:26650819-26650838 MsG0680031783.01.T01:intron 35.0%
AAGGGTTCAAATTCCTCAAT+TGG - Chr6:26650790-26650809 MsG0680031783.01.T01:intron 35.0%
AATGCTTCCATCTTCAATGA+CGG + Chr6:26649890-26649909 None:intergenic 35.0%
ACAACTTCGTCCAAATTTCT+TGG + Chr6:26649560-26649579 None:intergenic 35.0%
ACAGCTTGATTAAGAGCTAA+AGG + Chr6:26650486-26650505 None:intergenic 35.0%
AGAATCCTTCTGAATCTGAT+GGG - Chr6:26650820-26650839 MsG0680031783.01.T01:intron 35.0%
AGGTGATTCTTTAATGCGTT+TGG + Chr6:26649438-26649457 None:intergenic 35.0%
ATCTTTAACGCCTCTAGTAA+CGG + Chr6:26649752-26649771 None:intergenic 35.0%
CAGTAGAGTTACCTTTGTTA+GGG + Chr6:26649352-26649371 None:intergenic 35.0%
CCCAATTTCCTTCATTAACT+TGG + Chr6:26650700-26650719 None:intergenic 35.0%
GAGTCAATTGGACAAAATGA+AGG - Chr6:26650645-26650664 MsG0680031783.01.T01:intron 35.0%
GGTGTGATCAAATGAAAAGA+AGG + Chr6:26649940-26649959 None:intergenic 35.0%
GTCAATTGGACAAAATGAAG+GGG - Chr6:26650647-26650666 MsG0680031783.01.T01:intron 35.0%
TCAGTAGAGTTACCTTTGTT+AGG + Chr6:26649353-26649372 None:intergenic 35.0%
! AAAAGAAGGGTTTTCAGTAG+TGG + Chr6:26649926-26649945 None:intergenic 35.0%
! GTTTGAGTTTGTGATTGTGA+AGG + Chr6:26649458-26649477 None:intergenic 35.0%
! TTAGTTCAAAGCCTTGGTTT+TGG - Chr6:26650057-26650076 MsG0680031783.01.T01:CDS 35.0%
!! TATAACGGTTGATGAGTGTA+GGG + Chr6:26649524-26649543 None:intergenic 35.0%
!! TCGTGTTGCTTTGAATGTAT+TGG - Chr6:26650158-26650177 MsG0680031783.01.T01:CDS 35.0%
!!! TGCGTTTGGTTTGTTTTTGT+TGG + Chr6:26649424-26649443 None:intergenic 35.0%
AAAGGCTTAGTTCAAAGCCT+TGG - Chr6:26650051-26650070 MsG0680031783.01.T01:CDS 40.0%
AAGAACCAGAACCAAAACCA+AGG + Chr6:26650071-26650090 None:intergenic 40.0%
AAGGAAATTGGGTATGGGAA+GGG - Chr6:26650708-26650727 MsG0680031783.01.T01:intron 40.0%
AATAGTTGTCTTACCAGTGC+CGG + Chr6:26649671-26649690 None:intergenic 40.0%
AATTTGAACCCTTGAAGGGA+GGG + Chr6:26650783-26650802 None:intergenic 40.0%
ACCAACGCTAACATCAACTT+TGG + Chr6:26650094-26650113 None:intergenic 40.0%
AGCCTACGTGCAATATAAAG+CGG + Chr6:26650426-26650445 None:intergenic 40.0%
ATATTGCACGTAGGCTTGTA+CGG - Chr6:26650430-26650449 MsG0680031783.01.T01:CDS 40.0%
ATCTGGTTGAAGAGGGTTAA+GGG + Chr6:26649989-26650008 None:intergenic 40.0%
ATGCTTCCATCTTCAATGAC+GGG + Chr6:26649889-26649908 None:intergenic 40.0%
CAACCAATATATCGCTGCAT+CGG + Chr6:26650376-26650395 None:intergenic 40.0%
CATCTTGCTTATGACAAAGC+TGG - Chr6:26650294-26650313 MsG0680031783.01.T01:CDS 40.0%
CTCACACAAAACCCTAACAA+AGG - Chr6:26649338-26649357 MsG0680031783.01.T01:CDS 40.0%
GAGGAATTTGAACCCTTGAA+GGG + Chr6:26650787-26650806 None:intergenic 40.0%
GATTCAGAAGGATTCTTGTC+AGG + Chr6:26650816-26650835 None:intergenic 40.0%
GCAGGATAATCAGGAATTCA+AGG - Chr6:26650215-26650234 MsG0680031783.01.T01:CDS 40.0%
TCTTTATCTGCCGTTACTAG+AGG - Chr6:26649739-26649758 MsG0680031783.01.T01:CDS 40.0%
TGAGGAATTTGAACCCTTGA+AGG + Chr6:26650788-26650807 None:intergenic 40.0%
TGCAAGAATGACATTGCACT+CGG + Chr6:26650544-26650563 None:intergenic 40.0%
TGCACCAACCAAGTTAATGA+AGG - Chr6:26650689-26650708 MsG0680031783.01.T01:intron 40.0%
TGGAATTGTTTGCAAGGAGA+TGG + Chr6:26649592-26649611 None:intergenic 40.0%
TGTTACTGTCAGTGTTAGTG+TGG - Chr6:26650242-26650261 MsG0680031783.01.T01:CDS 40.0%
TTCTTACCCGTCATTGAAGA+TGG - Chr6:26649880-26649899 MsG0680031783.01.T01:CDS 40.0%
TTGTGTGAGAATCCATTCTG+TGG + Chr6:26649327-26649346 None:intergenic 40.0%
! TGTTCTGTGTCTGAGTTTTC+TGG + Chr6:26649797-26649816 None:intergenic 40.0%
!! ATGTGTTGCTTACTTGGCTT+TGG - Chr6:26650566-26650585 MsG0680031783.01.T01:intron 40.0%
!! GTATAACGGTTGATGAGTGT+AGG + Chr6:26649525-26649544 None:intergenic 40.0%
!! TCCAAAGTTGATGTTAGCGT+TGG - Chr6:26650090-26650109 MsG0680031783.01.T01:CDS 40.0%
!! TGCACAATGTGTTGCTTACT+TGG - Chr6:26650560-26650579 MsG0680031783.01.T01:intron 40.0%
!! TGTTAGCGTTGGTAACAATG+TGG - Chr6:26650101-26650120 MsG0680031783.01.T01:CDS 40.0%
AAGGTAGTGAGCGAGTCAAT+TGG - Chr6:26650633-26650652 MsG0680031783.01.T01:intron 45.0%
ACACGACAACGAGACAAAAG+AGG + Chr6:26649961-26649980 None:intergenic 45.0%
ACGTCTGCGTCCAAGAAATT+TGG - Chr6:26649547-26649566 MsG0680031783.01.T01:CDS 45.0%
AGAAGCAAAACGAGGTGATC+TGG + Chr6:26650006-26650025 None:intergenic 45.0%
ATAGTTGTCTTACCAGTGCC+GGG + Chr6:26649670-26649689 None:intergenic 45.0%
ATGCCGATGCAGCGATATAT+TGG - Chr6:26650370-26650389 MsG0680031783.01.T01:CDS 45.0%
ATGGAACAACTGGTGAGCAT+GGG - Chr6:26649239-26649258 MsG0680031783.01.T01:CDS 45.0%
ATGGAAGGAGACGTTTGTGT+TGG + Chr6:26649631-26649650 None:intergenic 45.0%
CGATGCAGCGATATATTGGT+TGG - Chr6:26650374-26650393 MsG0680031783.01.T01:CDS 45.0%
GAAGGAAATTGGGTATGGGA+AGG - Chr6:26650707-26650726 MsG0680031783.01.T01:intron 45.0%
GAATTTGAACCCTTGAAGGG+AGG + Chr6:26650784-26650803 None:intergenic 45.0%
GATCTGGTTGAAGAGGGTTA+AGG + Chr6:26649990-26650009 None:intergenic 45.0%
GATTCTTGTCAGGCCAATTG+AGG + Chr6:26650806-26650825 None:intergenic 45.0%
GCAAGAATGACATTGCACTC+GGG + Chr6:26650543-26650562 None:intergenic 45.0%
GCTGTTGCTGATACAGACAA+AGG - Chr6:26650033-26650052 MsG0680031783.01.T01:CDS 45.0%
GTCTCCTTCCATTATCCTGT+GGG - Chr6:26649639-26649658 MsG0680031783.01.T01:CDS 45.0%
GTTGAAGAGGGTTAAGGGTA+AGG + Chr6:26649984-26650003 None:intergenic 45.0%
TACTGTCAGTGTTAGTGTGG+AGG - Chr6:26650245-26650264 MsG0680031783.01.T01:CDS 45.0%
TGCACTACACAAGTCCATGA+GGG - Chr6:26650341-26650360 MsG0680031783.01.T01:CDS 45.0%
TGGTTGGCAAGAATGCTACA+AGG - Chr6:26650390-26650409 MsG0680031783.01.T01:CDS 45.0%
TGTCTGTATCAGCAACAGCA+CGG + Chr6:26650032-26650051 None:intergenic 45.0%
TGTGATGAAGAAGGGTTGTC+AGG + Chr6:26650747-26650766 None:intergenic 45.0%
TGTTAGTGTGGAGGATGCTA+AGG - Chr6:26650254-26650273 MsG0680031783.01.T01:CDS 45.0%
TTGGCAAGAATGCTACAAGG+AGG - Chr6:26650393-26650412 MsG0680031783.01.T01:CDS 45.0%
! AGCCGCTTTATATTGCACGT+AGG - Chr6:26650421-26650440 MsG0680031783.01.T01:CDS 45.0%
! TGCAAGTGAGGATGTTGGTT+TGG - Chr6:26650455-26650474 MsG0680031783.01.T01:CDS 45.0%
!! GATGGAAGCATTGTCTTCGT+TGG - Chr6:26649898-26649917 MsG0680031783.01.T01:CDS 45.0%
!! GGCACTGGTAAGACAACTAT+TGG - Chr6:26649670-26649689 MsG0680031783.01.T01:CDS 45.0%
!!! CAAAGCCTTGGTTTTGGTTC+TGG - Chr6:26650063-26650082 MsG0680031783.01.T01:CDS 45.0%
ACGAGGTGATCTGGTTGAAG+AGG + Chr6:26649997-26650016 None:intergenic 50.0%
ATGAAGAAGGGTTGTCAGGC+GGG + Chr6:26650743-26650762 None:intergenic 50.0%
ATTATCCTGTGGGTTCCACC+CGG - Chr6:26649649-26649668 MsG0680031783.01.T01:CDS 50.0%
CACGGTTGAGAAGCAAAACG+AGG + Chr6:26650014-26650033 None:intergenic 50.0%
CGAGGTGATCTGGTTGAAGA+GGG + Chr6:26649996-26650015 None:intergenic 50.0%
CGGTTTGCAAGTGAGGATGT+TGG - Chr6:26650450-26650469 MsG0680031783.01.T01:CDS 50.0%
CGTCTCCTTCCATTATCCTG+TGG - Chr6:26649638-26649657 MsG0680031783.01.T01:CDS 50.0%
CTTCCGTAAATGCTGCTGCT+CGG - Chr6:26650187-26650206 MsG0680031783.01.T01:CDS 50.0%
GATGAAGAAGGGTTGTCAGG+CGG + Chr6:26650744-26650763 None:intergenic 50.0%
GATGGAACAACTGGTGAGCA+TGG - Chr6:26649238-26649257 MsG0680031783.01.T01:CDS 50.0%
GCACTACACAAGTCCATGAG+GGG - Chr6:26650342-26650361 MsG0680031783.01.T01:CDS 50.0%
GCTTGTACGGTTTGCAAGTG+AGG - Chr6:26650443-26650462 MsG0680031783.01.T01:CDS 50.0%
GGACGCAGACGTTCGTATAA+CGG + Chr6:26649539-26649558 None:intergenic 50.0%
GGTGCATTCCTGAGATGAAG+AGG + Chr6:26650675-26650694 None:intergenic 50.0%
GTGCACTACACAAGTCCATG+AGG - Chr6:26650340-26650359 MsG0680031783.01.T01:CDS 50.0%
TACCCGAGCAGCAGCATTTA+CGG + Chr6:26650193-26650212 None:intergenic 50.0%
TAGTGTGGAGGATGCTAAGG+AGG - Chr6:26650257-26650276 MsG0680031783.01.T01:CDS 50.0%
TCGGGTACAGCAGGATAATC+AGG - Chr6:26650206-26650225 MsG0680031783.01.T01:CDS 50.0%
TGACTCGCTCACTACCTTCT+CGG + Chr6:26650631-26650650 None:intergenic 50.0%
TTCCGTAAATGCTGCTGCTC+GGG - Chr6:26650188-26650207 MsG0680031783.01.T01:CDS 50.0%
! GGTGAGCATGGGTTTTTCTG+AGG - Chr6:26649250-26649269 MsG0680031783.01.T01:CDS 50.0%
!! GGAACCCACAGGATAATGGA+AGG + Chr6:26649646-26649665 None:intergenic 50.0%
ACTTGCCACCCTCCCTTCAA+GGG - Chr6:26650772-26650791 MsG0680031783.01.T01:intron 55.0%
ATCGGCATCACTTCCCCTCA+TGG + Chr6:26650358-26650377 None:intergenic 55.0%
CCATCGTCGAAGCCACAGAA+TGG - Chr6:26649312-26649331 MsG0680031783.01.T01:CDS 55.0%
CCATTCTGTGGCTTCGACGA+TGG + Chr6:26649315-26649334 None:intergenic 55.0%
GGGTGGAACCCACAGGATAA+TGG + Chr6:26649650-26649669 None:intergenic 55.0%
TACTTGCCACCCTCCCTTCA+AGG - Chr6:26650771-26650790 MsG0680031783.01.T01:intron 55.0%
TTGAACCCTTGAAGGGAGGG+TGG + Chr6:26650780-26650799 None:intergenic 55.0%
!! AAGGGGTGCCTCTTCATCTC+AGG - Chr6:26650664-26650683 MsG0680031783.01.T01:intron 55.0%
!! GACGATGGATTTGCTGCCAG+TGG + Chr6:26649300-26649319 None:intergenic 55.0%
!! GATGGATTTGCTGCCAGTGG+CGG + Chr6:26649297-26649316 None:intergenic 55.0%
AGCGATTGGAGCTGCCGAGA+AGG - Chr6:26650614-26650633 MsG0680031783.01.T01:intron 60.0%
GGAGTTAGCCGCCCAAGCTT+TGG - Chr6:26649271-26649290 MsG0680031783.01.T01:CDS 60.0%
! GTTGTCTTACCAGTGCCGGG+TGG + Chr6:26649667-26649686 None:intergenic 60.0%
AGTGGCGGCCAAAGCTTGGG+CGG + Chr6:26649282-26649301 None:intergenic 65.0%
GCCAGTGGCGGCCAAAGCTT+GGG + Chr6:26649285-26649304 None:intergenic 65.0%
TGCCAGTGGCGGCCAAAGCT+TGG + Chr6:26649286-26649305 None:intergenic 65.0%
TGCTGCTGCTCGGGTACAGC+AGG - Chr6:26650197-26650216 MsG0680031783.01.T01:CDS 65.0%
CTGTGGGTTCCACCCGGCAC+TGG - Chr6:26649655-26649674 MsG0680031783.01.T01:CDS 70.0%
! CAGTGCCGGGTGGAACCCAC+AGG + Chr6:26649657-26649676 None:intergenic 70.0%
! GCCCAAGCTTTGGCCGCCAC+TGG - Chr6:26649281-26649300 MsG0680031783.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 26649233 26650845 26649233 ID=MsG0680031783.01;Name=MsG0680031783.01
Chr6 mRNA 26649233 26650845 26649233 ID=MsG0680031783.01.T01;Parent=MsG0680031783.01;Name=MsG0680031783.01.T01;_AED=0.27;_eAED=0.27;_QI=0|0|0|1|1|1|2|0|426
Chr6 exon 26650828 26650845 26650828 ID=MsG0680031783.01.T01:exon:8375;Parent=MsG0680031783.01.T01
Chr6 exon 26649233 26650495 26649233 ID=MsG0680031783.01.T01:exon:8374;Parent=MsG0680031783.01.T01
Chr6 CDS 26650828 26650845 26650828 ID=MsG0680031783.01.T01:cds;Parent=MsG0680031783.01.T01
Chr6 CDS 26649233 26650495 26649233 ID=MsG0680031783.01.T01:cds;Parent=MsG0680031783.01.T01
Gene Sequence

>MsG0680031783.01.T01

ATGGAGATGGAACAACTGACAAGACCATCTCCTTGCAAACAATTCCATTCTTTGTTCTACAATCCAACACAAACGTCTCCTTCCATTATCCTGTGGGTTCCACCCGGCACTGGTAAGACAACTATTGGCAAAGCTATTGTTAACTCAACAAATTCCAATTTCTATAGCTTTGTCTCTTTATCTGCCGTTACTAGAGGCGTTAAAGATGTTCGAGATGTTGTTGAAGACGCCAGAAAACTCAGACACAGAACAAATCAAACCACTATTCTCTTTGTTGATGAAGTTCATAGGTTTAATAAATCTCAACAGGATTCTTTCTTACCCGTCATTGAAGATGGAAGCATTGTCTTCGTTGGCGCCACTACTGAAAACCCTTCTTTTCATTTGATCACACCTCTTTTGTCTCGTTGTCGTGTCCTTACCCTTAACCCTCTTCAACCAGATCACCTCGTTTTGCTTCTCAACCGTGCTGTTGCTGATACAGACAAAGGCTTAGTTCAAAGCCTTGGTTTTGGTTCTGGTTCTTCCAAAGTTGATGTTAGCGTTGGTAACAATGTGGTTGATTTCATAGCTAACAATTGTGATGGAGATGCTCGTGTTGCTTTGAATGTATTGGAGATTGCTTCCGTAAATGCTGCTGCTCGGGTACAGCAGGATAATCAGGAATTCAAGGATGTTGTTACTGTCAGTGTTAGTGTGGAGGATGCTAAGGAGGCACTTCAATGCAAGCATCTTGCTTATGACAAAGCTGGAGAAGAACACTATAATTTAATCAGTGCACTACACAAGTCCATGAGGGGAAGTGATGCCGATGCAGCGATATATTGGTTGGCAAGAATGCTACAAGGAGGTGAAGAGCCGCTTTATATTGCACGTAGGCTTGTACGGTTTGCAAGTGAGGATGTTGGTTTGGCTGATCCTTTAGCTCTTAATCAAGCTGTTTCATGTTACCAATATTGTCACTTTATAGGAATGCCCGAGTGCAATGTCATTCTTGCACAATGTGTTGCTTACTTGGCTTTGGCACCTAAATCCATAGTTGTTTATAGAGCGATTGGAGCTGCCGAGAAGGTAGTGAGCGAGTCAATTGGACAAAATGAAGGGGTGCCTCTTCATCTCAGGAATGCACCAACCAAGTTAATGAAGGAAATTGGGTATGGGAAGGGATACATATACCCGCCTGACAACCCTTCTTCATCACATAACTACTTGCCACCCTCCCTTCAAGGGTTCAAATTCCTCAATTGGCCTGACAAGAATCCTTCTGAATCTGATGGGTAA
Protein sequence

>MsG0680031783.01.T01

MEMEQLTRPSPCKQFHSLFYNPTQTSPSIILWVPPGTGKTTIGKAIVNSTNSNFYSFVSLSAVTRGVKDVRDVVEDARKLRHRTNQTTILFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLQPDHLVLLLNRAVADTDKGLVQSLGFGSGSSKVDVSVGNNVVDFIANNCDGDARVALNVLEIASVNAAARVQQDNQEFKDVVTVSVSVEDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDADAAIYWLARMLQGGEEPLYIARRLVRFASEDVGLADPLALNQAVSCYQYCHFIGMPECNVILAQCVAYLALAPKSIVVYRAIGAAEKVVSESIGQNEGVPLHLRNAPTKLMKEIGYGKGYIYPPDNPSSSHNYLPPSLQGFKFLNWPDKNPSESDG*