AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680032004.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032004.01.T01 MTR_8g469790 43.005 193 109 1 353 545 76 267 7.91e-45 168
MsG0680032004.01.T01 MTR_1589s0010 35.870 184 117 1 386 569 79 261 1.50e-33 130
MsG0680032004.01.T01 MTR_2g461440 38.323 167 102 1 403 569 53 218 7.20e-32 124
MsG0680032004.01.T01 MTR_8g463500 33.659 205 106 2 353 557 238 412 1.80e-31 128
MsG0680032004.01.T01 MTR_0042s0100 47.541 122 64 0 372 493 9 130 1.41e-30 119
MsG0680032004.01.T01 MTR_1g053420 32.159 227 116 3 331 557 64 252 5.54e-30 120
MsG0680032004.01.T01 MTR_0002s0930 60.000 85 34 0 67 151 94 178 1.95e-29 118
MsG0680032004.01.T01 MTR_3g438210 40.964 166 91 4 331 492 150 312 9.88e-29 118
MsG0680032004.01.T01 MTR_3g012210 28.033 239 154 2 381 619 119 339 1.88e-22 101
MsG0680032004.01.T01 MTR_0035s0100 51.648 91 40 2 326 415 121 208 1.38e-20 90.9
MsG0680032004.01.T01 MTR_2g054450 44.330 97 54 0 431 527 200 296 1.50e-20 93.6
MsG0680032004.01.T01 MTR_3g040820 35.345 116 75 0 420 535 30 145 1.94e-19 86.7
MsG0680032004.01.T01 MTR_1058s0010 27.100 369 205 15 91 422 60 401 2.46e-19 91.3
MsG0680032004.01.T01 MTR_6g465880 41.880 117 55 1 441 557 16 119 4.79e-19 84.7
MsG0680032004.01.T01 MTR_3g010640 53.846 78 32 1 94 171 1 74 1.32e-18 80.9
MsG0680032004.01.T01 MTR_1g050895 35.246 122 79 0 448 569 84 205 1.64e-18 85.1
MsG0680032004.01.T01 MTR_1g050895 36.782 87 55 0 473 559 1 87 3.78e-12 66.6
MsG0680032004.01.T01 MTR_1g050885 35.246 122 79 0 448 569 84 205 1.64e-18 85.1
MsG0680032004.01.T01 MTR_1g050885 36.782 87 55 0 473 559 1 87 3.78e-12 66.6
MsG0680032004.01.T01 MTR_1g050875 35.246 122 79 0 448 569 84 205 1.64e-18 85.1
MsG0680032004.01.T01 MTR_1g050875 36.782 87 55 0 473 559 1 87 3.78e-12 66.6
MsG0680032004.01.T01 MTR_0117s0100 37.870 169 96 3 331 494 96 260 2.38e-18 85.9
MsG0680032004.01.T01 MTR_6g471360 33.714 175 99 1 437 611 200 357 2.55e-18 89.0
MsG0680032004.01.T01 MTR_1g060170 35.878 131 72 2 326 448 25 151 7.86e-18 82.4
MsG0680032004.01.T01 MTR_0848s0010 31.707 123 65 1 344 466 25 128 2.76e-17 79.3
MsG0680032004.01.T01 MTR_8g106890 50.000 72 33 1 504 575 10 78 3.76e-17 77.4
MsG0680032004.01.T01 MTR_1g041215 43.750 80 45 0 92 171 1 80 9.83e-17 79.0
MsG0680032004.01.T01 MTR_2g043470 29.861 144 97 1 357 500 89 228 1.18e-16 80.5
MsG0680032004.01.T01 MTR_0321s0010 47.500 80 40 1 353 430 15 94 1.77e-16 75.5
MsG0680032004.01.T01 MTR_0034s0110 40.506 79 47 0 468 546 36 114 1.78e-16 76.3
MsG0680032004.01.T01 MTR_0467s0020 43.434 99 53 2 331 427 64 161 6.78e-16 76.6
MsG0680032004.01.T01 MTR_0150s0040 39.560 91 52 1 468 555 6 96 1.23e-15 77.4
MsG0680032004.01.T01 MTR_0075s0050 39.450 109 65 1 394 502 269 376 5.17e-15 77.8
MsG0680032004.01.T01 MTR_2g460920 38.824 85 52 0 473 557 1 85 5.95e-15 73.2
MsG0680032004.01.T01 MTR_3g435760 55.357 56 25 0 371 426 81 136 8.93e-15 72.4
MsG0680032004.01.T01 MTR_3g040130 34.737 95 60 1 463 557 3 95 3.83e-14 72.8
MsG0680032004.01.T01 MTR_5g464510 33.645 107 65 2 468 568 4 110 4.64e-14 71.2
MsG0680032004.01.T01 MTR_2g461860 39.130 92 43 1 445 536 1 79 3.36e-13 68.6
MsG0680032004.01.T01 MTR_5g053815 28.431 102 73 0 518 619 105 206 3.00e-12 68.2
MsG0680032004.01.T01 MTR_3g081370 45.000 60 33 0 131 190 1 60 3.39e-12 63.5
MsG0680032004.01.T01 MTR_2g069520 25.153 163 106 2 403 564 248 395 6.63e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 172 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTTCTTTGATGGAAAAT+TGG 0.088167 6:+31781429 MsG0680032004.01.T01:CDS
TTGGCCATTGTTAGATATTT+AGG 0.161335 6:+31779767 MsG0680032004.01.T01:CDS
TTCTTTCAAATCTTCAAGTA+TGG 0.255349 6:-31783187 None:intergenic
TGATCAACCAACTTCTTTGA+TGG 0.278829 6:+31781421 MsG0680032004.01.T01:CDS
CGACTTCAGCTCAATTGATT+TGG 0.279616 6:-31781216 None:intergenic
TGAGGATGTGCCTATCTTAA+TGG 0.279893 6:+31782852 MsG0680032004.01.T01:CDS
TCATTAGCCATGTCTACTTC+TGG 0.293030 6:-31781128 None:intergenic
AACTTCTTTGATGGAAAATT+GGG 0.297084 6:+31781430 MsG0680032004.01.T01:CDS
ATCAACTTTGGCTTCTTCCT+TGG 0.301291 6:-31783214 None:intergenic
ACAAAGGTCACCAACTCTTT+TGG 0.313876 6:-31782692 None:intergenic
CTCTTCCCCTTCAAAAGAAC+CGG 0.316683 6:-31781573 None:intergenic
CCCTTCAAAAGAACCGGGTT+CGG 0.322278 6:-31781567 None:intergenic
AATTACTTGTGGACTTTGTA+CGG 0.330353 6:+31781520 MsG0680032004.01.T01:CDS
AAAGATGTGGGGAAAGATAA+AGG 0.330920 6:+31782283 MsG0680032004.01.T01:CDS
CACTACAATTGGCATCGATT+TGG 0.335229 6:-31782531 None:intergenic
CCCGGATCTTGCTCTTTCTT+AGG 0.340564 6:-31782574 None:intergenic
TCTTCAAGTATGGCTTGATT+AGG 0.347714 6:-31783177 None:intergenic
CAAGGGTGCATGTTTCAAAA+TGG 0.368048 6:+31782996 MsG0680032004.01.T01:CDS
CCGGCTTGTTGTTGTTGGTT+AGG 0.371441 6:-31781623 None:intergenic
CGCTCTTTGTCTTTCTTCGA+TGG 0.373717 6:-31782364 None:intergenic
TTGAATAATAGCACTACAAT+TGG 0.377960 6:-31782542 None:intergenic
ATAACTCATAACCAGTTTAC+CGG 0.379809 6:+31781254 MsG0680032004.01.T01:CDS
ATTTCAAGAAAGGTTCTTTC+CGG 0.382081 6:+31781469 MsG0680032004.01.T01:CDS
TCGAGTACTTCAAAGCTTCT+CGG 0.383479 6:-31782969 None:intergenic
CCTTCAAAAGAACCGGGTTC+GGG 0.384478 6:-31781566 None:intergenic
ACCGGTAGAGTGACTCTTCC+CGG 0.385238 6:-31782592 None:intergenic
CATGATCCATACCGGTAAAC+TGG 0.389712 6:-31781265 None:intergenic
CGGAACCTCACAACAAAATC+CGG 0.395215 6:+31781643 MsG0680032004.01.T01:CDS
AAATTCCTTCCCATTAAGAT+AGG 0.398895 6:-31782862 None:intergenic
TGCTCCAAGGCTTCTGAGAA+TGG 0.401809 6:-31782436 None:intergenic
GTGGGAGAGTAGTAGGTAAA+GGG 0.407446 6:+31782071 MsG0680032004.01.T01:CDS
AAAACATACTTCAAATTAGA+TGG 0.409829 6:-31783263 None:intergenic
TACCTTGGTGTCATCAACTT+TGG 0.415811 6:-31783226 None:intergenic
TAGAGAAAGCATTTCAAGAA+AGG 0.415921 6:+31781459 MsG0680032004.01.T01:CDS
TTTAGTGGTACAAGAGGAGA+TGG 0.418919 6:+31782249 MsG0680032004.01.T01:CDS
GAGGATGTGCCTATCTTAAT+GGG 0.421637 6:+31782853 MsG0680032004.01.T01:CDS
GGTAAAGCACTACTTGATCT+TGG 0.425272 6:+31782637 MsG0680032004.01.T01:CDS
AAATCAATTGAGCTGAAGTC+GGG 0.426874 6:+31781218 MsG0680032004.01.T01:CDS
ACAAGGAGTGGGAGAGTAGT+AGG 0.435510 6:+31782064 MsG0680032004.01.T01:CDS
GGAGGATAGTGTAGAGATAG+AGG 0.441077 6:+31782165 MsG0680032004.01.T01:CDS
GTTGTTGGTTAGGCCTTTGT+TGG 0.441842 6:-31781613 None:intergenic
TGTTTCCTCATTCTTTGATC+GGG 0.445835 6:+31781378 MsG0680032004.01.T01:CDS
GTCACTCTACCGGTAGCTAT+TGG 0.447624 6:+31782601 MsG0680032004.01.T01:CDS
CAAAGCTTCTCGGATGTTGA+AGG 0.451043 6:-31782959 None:intergenic
AAGTTGGTAAGATGTCTATA+TGG 0.454384 6:-31781293 None:intergenic
ATTAGGAAGAACCTCCTTCA+AGG 0.456627 6:-31783160 None:intergenic
TTGTTTCCTCATTCTTTGAT+CGG 0.457081 6:+31781377 MsG0680032004.01.T01:CDS
ACCCCTTGAGAGTGCTTTGG+TGG 0.459918 6:+31783071 MsG0680032004.01.T01:CDS
TGCCATTGAAGAGTGTTTGA+AGG 0.459925 6:+31783128 MsG0680032004.01.T01:CDS
TTCGATGGAGCATGTGGGTA+TGG 0.464646 6:-31782349 None:intergenic
GACTAGGATGATGTTGCAAT+TGG 0.465665 6:+31782723 MsG0680032004.01.T01:CDS
CGCCGGTACACTTGGTATGA+AGG 0.467639 6:+31781325 MsG0680032004.01.T01:CDS
CCGAGGAGGCTAGCTAATCT+TGG 0.467795 6:+31781182 MsG0680032004.01.T01:CDS
GCCTAAGAAAGAGCAAGATC+CGG 0.469940 6:+31782573 MsG0680032004.01.T01:CDS
ATTACTTGTGGACTTTGTAC+GGG 0.474389 6:+31781521 MsG0680032004.01.T01:CDS
GAAGGAGCTAGATTCCTTGA+AGG 0.474458 6:+31783146 MsG0680032004.01.T01:CDS
AACACCCCTTGAGAGTGCTT+TGG 0.475411 6:+31783068 MsG0680032004.01.T01:CDS
ATGCAACTTCATCAAGGAGC+AGG 0.476220 6:+31779725 MsG0680032004.01.T01:CDS
TTCTTTGATCGGGAAGGCTA+AGG 0.477392 6:+31781388 MsG0680032004.01.T01:CDS
TTCATGAACTTCGCATAGAC+CGG 0.478112 6:-31782463 None:intergenic
TATACCATTCTCAGAAGCCT+TGG 0.483017 6:+31782432 MsG0680032004.01.T01:CDS
TGGTACAAGAGGAGATGGAG+AGG 0.483184 6:+31782254 MsG0680032004.01.T01:CDS
AGGTTCCGGCTTGTTGTTGT+TGG 0.486937 6:-31781628 None:intergenic
TATGAAGGAAGATGAGGAGG+AGG 0.488401 6:+31781340 MsG0680032004.01.T01:CDS
CCTAAGAAAGAGCAAGATCC+GGG 0.490537 6:+31782574 MsG0680032004.01.T01:CDS
AGTGGGAGAGTAGTAGGTAA+AGG 0.493539 6:+31782070 MsG0680032004.01.T01:CDS
ACCGGGTTCGGGACAATAGC+CGG 0.496456 6:-31781555 None:intergenic
TCTACTTCTGGTTCACTCCT+CGG 0.497757 6:-31781116 None:intergenic
AGTAGTCAAGATGACTTCTT+CGG 0.498098 6:-31783025 None:intergenic
AAGAGATTTAGTGGTACAAG+AGG 0.499356 6:+31782243 MsG0680032004.01.T01:CDS
AAAGGTTCTTTCCGGAGGAT+AGG 0.501105 6:+31781477 MsG0680032004.01.T01:CDS
AAGATGTGGGGAAAGATAAA+GGG 0.501824 6:+31782284 MsG0680032004.01.T01:CDS
GGGAAGGAATTTCATGCAAA+CGG 0.503463 6:+31782873 MsG0680032004.01.T01:CDS
GCTACGTGGCAAGACTTCAT+TGG 0.504901 6:+31779748 MsG0680032004.01.T01:CDS
TCCTCATTCTTTGATCGGGA+AGG 0.507562 6:+31781382 MsG0680032004.01.T01:CDS
GTAAACATTTAATTCTACCT+TGG 0.514400 6:-31783241 None:intergenic
TATGTTACCGCCGGTACACT+TGG 0.515317 6:+31781317 MsG0680032004.01.T01:CDS
CTCCTTCAAACACTCTTCAA+TGG 0.516742 6:-31783130 None:intergenic
TCATAACCAGTTTACCGGTA+TGG 0.521951 6:+31781259 MsG0680032004.01.T01:CDS
GCCTCAAGATGCCTATCCTC+CGG 0.525375 6:-31781488 None:intergenic
AGAAGCCTTGGAGCAAATGC+CGG 0.525897 6:+31782444 MsG0680032004.01.T01:CDS
GCTAAAACTTCAATTACTTG+TGG 0.526322 6:+31781509 MsG0680032004.01.T01:CDS
GAGAGGAAGAATAAAGATGT+GGG 0.527094 6:+31782271 MsG0680032004.01.T01:CDS
CCAAGATTAGCTAGCCTCCT+CGG 0.529306 6:-31781182 None:intergenic
CAGTCAAAGCTATAGCTACA+AGG 0.529766 6:+31782047 MsG0680032004.01.T01:CDS
TCTTTCTTCGATGGAGCATG+TGG 0.535605 6:-31782355 None:intergenic
GGATGATGAAGTTGTCAATG+AGG 0.537650 6:+31782123 MsG0680032004.01.T01:CDS
TTCCTTCATACCAAGTGTAC+CGG 0.538618 6:-31781327 None:intergenic
CGTCCACCAAAGCACTCTCA+AGG 0.539934 6:-31783074 None:intergenic
CTTTGCAAAACCACTAGGTA+TGG 0.540536 6:+31782756 MsG0680032004.01.T01:CDS
CGAAGATGTTCTTGTAAAAG+TGG 0.543302 6:+31782780 MsG0680032004.01.T01:CDS
CGCGAGATGCAACTTCATCA+AGG 0.543606 6:+31779719 None:intergenic
GGAGAGGAAGAATAAAGATG+TGG 0.546260 6:+31782270 MsG0680032004.01.T01:CDS
ACCGGCTATTGTCCCGAACC+CGG 0.546341 6:+31781554 MsG0680032004.01.T01:CDS
TTGTCCGTTGCCAAAAGAGT+TGG 0.550528 6:+31782682 MsG0680032004.01.T01:CDS
ATGAGAATGCTCTACCTATG+TGG 0.557247 6:+31781153 MsG0680032004.01.T01:CDS
ATAGACCGGCATTTGCTCCA+AGG 0.557385 6:-31782449 None:intergenic
TGGGAGAGTAGTAGGTAAAG+GGG 0.559448 6:+31782072 MsG0680032004.01.T01:CDS
ATGAAGGAAGATGAGGAGGA+GGG 0.560625 6:+31781341 MsG0680032004.01.T01:CDS
AAAGCTATAGCTACAAGGAG+TGG 0.562148 6:+31782052 MsG0680032004.01.T01:CDS
ACCAACTTCTATGTTACCGC+CGG 0.563000 6:+31781308 MsG0680032004.01.T01:CDS
AGAGTAGTAGGTAAAGGGGT+AGG 0.563212 6:+31782076 MsG0680032004.01.T01:CDS
ACCTTTGTATAAAGCGGACT+AGG 0.566559 6:+31782707 MsG0680032004.01.T01:CDS
CAAATCAATTGAGCTGAAGT+CGG 0.566821 6:+31781217 MsG0680032004.01.T01:CDS
AAGCTATAGCTACAAGGAGT+GGG 0.567481 6:+31782053 MsG0680032004.01.T01:CDS
GGATAGTGTAGAGATAGAGG+AGG 0.568435 6:+31782168 MsG0680032004.01.T01:CDS
TCCATAACCACAAAATCAGC+CGG 0.569882 6:-31782817 None:intergenic
AGATTTGAAAGAAGAATCCA+AGG 0.573153 6:+31783197 MsG0680032004.01.T01:CDS
GGTCAAGGTAAATGATGAAG+AGG 0.574516 6:+31782933 MsG0680032004.01.T01:CDS
TCCTAGTCCGCTTTATACAA+AGG 0.576994 6:-31782708 None:intergenic
AGGGGAAGAGGTCAACTATG+TGG 0.578340 6:+31781586 MsG0680032004.01.T01:CDS
AAATCCTTTGCAAAACCACT+AGG 0.580723 6:+31782751 MsG0680032004.01.T01:CDS
GGAGGACAAAGAGAAGTTCG+AGG 0.580841 6:+31782144 MsG0680032004.01.T01:CDS
TGAGAATGCTCTACCTATGT+GGG 0.584455 6:+31781154 MsG0680032004.01.T01:CDS
TGGATCCTCATGATCCATAC+CGG 0.585303 6:-31781273 None:intergenic
TTACTTGTGGACTTTGTACG+GGG 0.585964 6:+31781522 MsG0680032004.01.T01:CDS
TCTTCCCCTTCAAAAGAACC+GGG 0.592361 6:-31781572 None:intergenic
ACTTGGTATGAAGGAAGATG+AGG 0.593036 6:+31781334 MsG0680032004.01.T01:CDS
AAGAAGTCATCTTGACTACT+CGG 0.593049 6:+31783028 MsG0680032004.01.T01:CDS
TCCGGAGGATAGGCATCTTG+AGG 0.593363 6:+31781487 MsG0680032004.01.T01:CDS
TGATATTGTTGTTGAAGAGA+AGG 0.596561 6:+31782102 MsG0680032004.01.T01:CDS
GCCTTCCCGATCAAAGAATG+AGG 0.597293 6:-31781383 None:intergenic
GGAATTTCATGCAAACGGCT+CGG 0.597894 6:+31782878 MsG0680032004.01.T01:CDS
CTTTCTTCGATGGAGCATGT+GGG 0.605502 6:-31782354 None:intergenic
GCTTTGACTGCTATGCCTTG+TGG 0.606016 6:-31782034 None:intergenic
GGGGAAGAGGTCAACTATGT+GGG 0.606136 6:+31781587 MsG0680032004.01.T01:CDS
TCCGGGAAGAGTCACTCTAC+CGG 0.608020 6:+31782591 MsG0680032004.01.T01:CDS
GCTATTGGCACAACACATGT+AGG 0.609466 6:+31782616 MsG0680032004.01.T01:CDS
ACAAAGAGCGGCAATACGCA+AGG 0.610230 6:+31782377 MsG0680032004.01.T01:CDS
ACCGGCGGTAACATAGAAGT+TGG 0.611057 6:-31781309 None:intergenic
TTGGTGACCTTTGTATAAAG+CGG 0.612448 6:+31782701 MsG0680032004.01.T01:CDS
TCTTGATGATAATATCATGA+AGG 0.612997 6:+31782912 MsG0680032004.01.T01:CDS
ATGTGCCTATCTTAATGGGA+AGG 0.614065 6:+31782857 MsG0680032004.01.T01:CDS
TGTGTTGTGCCAATAGCTAC+CGG 0.614202 6:-31782610 None:intergenic
TGATAATATCATGAAGGTCA+AGG 0.615829 6:+31782918 MsG0680032004.01.T01:CDS
GGAACCTCACAACAAAATCC+GGG 0.617512 6:+31781644 MsG0680032004.01.T01:CDS
GGAGCTAGATTCCTTGAAGG+AGG 0.618391 6:+31783149 MsG0680032004.01.T01:CDS
TCAAGAAAGGTTCTTTCCGG+AGG 0.623464 6:+31781472 MsG0680032004.01.T01:CDS
CCTAACCAACAACAACAAGC+CGG 0.624251 6:+31781623 MsG0680032004.01.T01:CDS
TGCAACTTCATCAAGGAGCA+GGG 0.626055 6:+31779726 MsG0680032004.01.T01:CDS
TGGTATGAAGGAAGATGAGG+AGG 0.629221 6:+31781337 MsG0680032004.01.T01:CDS
TACCTATGTGGGTTAGTCCG+AGG 0.630124 6:+31781165 MsG0680032004.01.T01:CDS
GTCCACCAAAGCACTCTCAA+GGG 0.634896 6:-31783073 None:intergenic
TATGGATGTCGAAGAAGATG+AGG 0.636377 6:+31782834 MsG0680032004.01.T01:CDS
ACTTCTTTGATGGAAAATTG+GGG 0.636542 6:+31781431 MsG0680032004.01.T01:CDS
TGATGAAGTTGTCAATGAGG+AGG 0.638545 6:+31782126 MsG0680032004.01.T01:CDS
CATCGAAGAAAGACAAAGAG+CGG 0.640730 6:+31782365 MsG0680032004.01.T01:CDS
ACATCTTCGGCCATACCTAG+TGG 0.642657 6:-31782766 None:intergenic
GAAGCCTAAATATCTAACAA+TGG 0.643272 6:-31779771 None:intergenic
TCGGTGCATACTATATCACT+AGG 0.643739 6:+31781062 MsG0680032004.01.T01:CDS
TTTGAAGTACTCGAAAGACA+AGG 0.645454 6:+31782978 MsG0680032004.01.T01:CDS
GTTTACCGGTATGGATCATG+AGG 0.653289 6:+31781268 MsG0680032004.01.T01:CDS
TCCACCAAAGCACTCTCAAG+GGG 0.656909 6:-31783072 None:intergenic
AATCAATTGAGCTGAAGTCG+GGG 0.657107 6:+31781219 MsG0680032004.01.T01:CDS
GAGTGAACCAGAAGTAGACA+TGG 0.659086 6:+31781121 MsG0680032004.01.T01:CDS
GGGTTCGGGACAATAGCCGG+TGG 0.662534 6:-31781552 None:intergenic
CTATGTGGGTTAGTCCGAGG+AGG 0.666965 6:+31781168 MsG0680032004.01.T01:CDS
CATCAAGGAGCAGGGCTACG+TGG 0.667343 6:+31779734 MsG0680032004.01.T01:CDS
TTGAAGTACTCGAAAGACAA+GGG 0.670407 6:+31782979 MsG0680032004.01.T01:CDS
CTCCTCGGACTAACCCACAT+AGG 0.671295 6:-31781167 None:intergenic
AAATCCTAAGGAGCACCACA+AGG 0.672841 6:+31782019 MsG0680032004.01.T01:intron
AGCCAAAGTTGATGACACCA+AGG 0.680038 6:+31783224 MsG0680032004.01.T01:CDS
CTTCTGCACATTCATCTCCG+AGG 0.680158 6:+31781099 MsG0680032004.01.T01:CDS
AGAGGAAGAATAAAGATGTG+GGG 0.686042 6:+31782272 MsG0680032004.01.T01:CDS
CTTCATACCAAGTGTACCGG+CGG 0.686464 6:-31781324 None:intergenic
ACAAGTAGTTGAGAAGCAAG+TGG 0.687360 6:+31782312 MsG0680032004.01.T01:CDS
ACTATGTGGGAAACCAACAA+AGG 0.689249 6:+31781600 MsG0680032004.01.T01:CDS
TGATCGGGAAGGCTAAGGAG+TGG 0.690858 6:+31781393 MsG0680032004.01.T01:CDS
GGTTCGGGACAATAGCCGGT+GGG 0.690970 6:-31781551 None:intergenic
AGTAGTTGAGAAGCAAGTGG+TGG 0.696586 6:+31782315 MsG0680032004.01.T01:CDS
TACTTGTGGACTTTGTACGG+GGG 0.706478 6:+31781523 MsG0680032004.01.T01:CDS
GGACAAAGAGAAGTTCGAGG+AGG 0.710501 6:+31782147 MsG0680032004.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGATCTTTTAATATATA+AGG + Chr6:31780114-31780133 MsG0680032004.01.T01:intron 10.0%
!! AAATGTATAAAATGTTTCAA+TGG - Chr6:31779890-31779909 None:intergenic 15.0%
!! AGAAATGATTGTAATAATAT+TGG + Chr6:31780453-31780472 MsG0680032004.01.T01:intron 15.0%
!! TGATTAAAAGTAATTATCAA+AGG - Chr6:31780284-31780303 None:intergenic 15.0%
!! AAATCAAAAAAGAGATTTAG+TGG + Chr6:31782234-31782253 MsG0680032004.01.T01:CDS 20.0%
!!! AATCAAGATTTTAATGCTTT+CGG + Chr6:31780299-31780318 MsG0680032004.01.T01:intron 20.0%
!!! ATTTGGTATTGATTATTGAA+TGG - Chr6:31781800-31781819 None:intergenic 20.0%
!!! TATTGATAGTTATTGTTGTA+CGG - Chr6:31781731-31781750 None:intergenic 20.0%
!!! TTTTACTTTAGTGTCAAATA+TGG + Chr6:31780573-31780592 MsG0680032004.01.T01:intron 20.0%
! AACTTCTTTGATGGAAAATT+GGG + Chr6:31781430-31781449 MsG0680032004.01.T01:CDS 25.0%
! AGGGAAAACTTGTATTTAAA+TGG - Chr6:31779846-31779865 None:intergenic 25.0%
! ATTGATTATTGAATGGTTGT+TGG - Chr6:31781793-31781812 None:intergenic 25.0%
! GGAAAAATCTTACATCAAAA+TGG + Chr6:31780729-31780748 MsG0680032004.01.T01:intron 25.0%
! GGAATAAAAAGTAAAGATTC+CGG - Chr6:31781029-31781048 None:intergenic 25.0%
! GGGAAAACTTGTATTTAAAT+GGG - Chr6:31779845-31779864 None:intergenic 25.0%
! GTAAACATTTAATTCTACCT+TGG - Chr6:31783244-31783263 None:intergenic 25.0%
! TACATAGTTATATGACATGT+AGG + Chr6:31780708-31780727 MsG0680032004.01.T01:intron 25.0%
! TTCTTTCAAATCTTCAAGTA+TGG - Chr6:31783190-31783209 None:intergenic 25.0%
! TTGAATAATAGCACTACAAT+TGG - Chr6:31782545-31782564 None:intergenic 25.0%
! TTGTTATCGTTTAAGGAATT+TGG + Chr6:31780368-31780387 MsG0680032004.01.T01:intron 25.0%
!! TCTTGATGATAATATCATGA+AGG + Chr6:31782912-31782931 MsG0680032004.01.T01:CDS 25.0%
!!! AGTGGACAAATTTATTTTTC+CGG + Chr6:31782798-31782817 MsG0680032004.01.T01:CDS 25.0%
!!! TATTTTTTATGCTAACCACT+TGG + Chr6:31780867-31780886 MsG0680032004.01.T01:intron 25.0%
!!! TTTTATACATTTCTAGAGAG+AGG + Chr6:31779898-31779917 MsG0680032004.01.T01:intron 25.0%
AAACACAAAGCAAGTGATTA+AGG + Chr6:31779942-31779961 MsG0680032004.01.T01:intron 30.0%
AAATTCCTTCCCATTAAGAT+AGG - Chr6:31782865-31782884 None:intergenic 30.0%
AATTACTTGTGGACTTTGTA+CGG + Chr6:31781520-31781539 MsG0680032004.01.T01:CDS 30.0%
ACACTAAAGTAAAAACGAGA+GGG - Chr6:31780567-31780586 None:intergenic 30.0%
ACTTCTTTGATGGAAAATTG+GGG + Chr6:31781431-31781450 MsG0680032004.01.T01:CDS 30.0%
AGATTTGAAAGAAGAATCCA+AGG + Chr6:31783197-31783216 MsG0680032004.01.T01:CDS 30.0%
ATAACTCATAACCAGTTTAC+CGG + Chr6:31781254-31781273 MsG0680032004.01.T01:CDS 30.0%
ATGTACACGTGAGTATATAT+AGG - Chr6:31780693-31780712 None:intergenic 30.0%
ATTTCAAGAAAGGTTCTTTC+CGG + Chr6:31781469-31781488 MsG0680032004.01.T01:CDS 30.0%
CAAAGAGATTCAAGATGATT+TGG + Chr6:31780186-31780205 MsG0680032004.01.T01:intron 30.0%
CAACTTCTTTGATGGAAAAT+TGG + Chr6:31781429-31781448 MsG0680032004.01.T01:CDS 30.0%
CGAATGTTTAAACTCTAACT+TGG + Chr6:31780394-31780413 MsG0680032004.01.T01:intron 30.0%
GAAGCCTAAATATCTAACAA+TGG - Chr6:31779774-31779793 None:intergenic 30.0%
GCTAAAACTTCAATTACTTG+TGG + Chr6:31781509-31781528 MsG0680032004.01.T01:CDS 30.0%
TAAACTAATGCAAGGAATGA+AGG - Chr6:31780029-31780048 None:intergenic 30.0%
TACACAATCGTTCACATTAA+GGG - Chr6:31780633-31780652 None:intergenic 30.0%
TAGACATGTAAACTAATGCA+AGG - Chr6:31780037-31780056 None:intergenic 30.0%
TGATAATATCATGAAGGTCA+AGG + Chr6:31782918-31782937 MsG0680032004.01.T01:CDS 30.0%
TTACACAATCGTTCACATTA+AGG - Chr6:31780634-31780653 None:intergenic 30.0%
TTACCTCAATACTACAAAGA+AGG - Chr6:31780073-31780092 None:intergenic 30.0%
TTGATGTCTCAATGAATCTA+GGG - Chr6:31779979-31779998 None:intergenic 30.0%
TTGGCCATTGTTAGATATTT+AGG + Chr6:31779767-31779786 MsG0680032004.01.T01:CDS 30.0%
TTGTTTCCTCATTCTTTGAT+CGG + Chr6:31781377-31781396 MsG0680032004.01.T01:CDS 30.0%
! ATCGACTTTGTTATCGTTTA+AGG + Chr6:31780361-31780380 MsG0680032004.01.T01:intron 30.0%
! CAATTTTCCATCAAAGAAGT+TGG - Chr6:31781431-31781450 None:intergenic 30.0%
! CACTTTTACAAGAACATCTT+CGG - Chr6:31782782-31782801 None:intergenic 30.0%
! TGATATTGTTGTTGAAGAGA+AGG + Chr6:31782102-31782121 MsG0680032004.01.T01:CDS 30.0%
! TGATTCTTCTTTTCTTGGAA+AGG - Chr6:31782495-31782514 None:intergenic 30.0%
!! AAGTTGGTAAGATGTCTATA+TGG - Chr6:31781296-31781315 None:intergenic 30.0%
!! TAGAGAAAGCATTTCAAGAA+AGG + Chr6:31781459-31781478 MsG0680032004.01.T01:CDS 30.0%
!!! ATCGTTGATTCTTCTTTTCT+TGG - Chr6:31782500-31782519 None:intergenic 30.0%
AAAGATGTGGGGAAAGATAA+AGG + Chr6:31782283-31782302 MsG0680032004.01.T01:CDS 35.0%
AAATCAATTGAGCTGAAGTC+GGG + Chr6:31781218-31781237 MsG0680032004.01.T01:CDS 35.0%
AAATCCTTTGCAAAACCACT+AGG + Chr6:31782751-31782770 MsG0680032004.01.T01:CDS 35.0%
AAGAAGTCATCTTGACTACT+CGG + Chr6:31783028-31783047 MsG0680032004.01.T01:CDS 35.0%
AAGAGATTTAGTGGTACAAG+AGG + Chr6:31782243-31782262 MsG0680032004.01.T01:CDS 35.0%
AAGATGTGGGGAAAGATAAA+GGG + Chr6:31782284-31782303 MsG0680032004.01.T01:CDS 35.0%
AATCGTTCACATTAAGGGTT+TGG - Chr6:31780628-31780647 None:intergenic 35.0%
AGAGGAAGAATAAAGATGTG+GGG + Chr6:31782272-31782291 MsG0680032004.01.T01:CDS 35.0%
AGTAGTCAAGATGACTTCTT+CGG - Chr6:31783028-31783047 None:intergenic 35.0%
ATAGTGAATAGTCTAGAGAG+AGG - Chr6:31779866-31779885 None:intergenic 35.0%
ATATATAGGATCGTTTCCAC+AGG - Chr6:31780679-31780698 None:intergenic 35.0%
ATGCTTTCGGATACTTAATC+AGG + Chr6:31780312-31780331 MsG0680032004.01.T01:intron 35.0%
ATTACTTGTGGACTTTGTAC+GGG + Chr6:31781521-31781540 MsG0680032004.01.T01:CDS 35.0%
CAAATCAATTGAGCTGAAGT+CGG + Chr6:31781217-31781236 MsG0680032004.01.T01:CDS 35.0%
CAATCTCTGGATCAAATTGT+AGG - Chr6:31780942-31780961 None:intergenic 35.0%
CACTAAAGTAAAAACGAGAG+GGG - Chr6:31780566-31780585 None:intergenic 35.0%
CGAAGATGTTCTTGTAAAAG+TGG + Chr6:31782780-31782799 MsG0680032004.01.T01:CDS 35.0%
CTAGATTCATTGAGACATCA+AGG + Chr6:31779978-31779997 MsG0680032004.01.T01:intron 35.0%
CTTGATGTCTCAATGAATCT+AGG - Chr6:31779980-31779999 None:intergenic 35.0%
GACACTAAAGTAAAAACGAG+AGG - Chr6:31780568-31780587 None:intergenic 35.0%
GAGAGGAAGAATAAAGATGT+GGG + Chr6:31782271-31782290 MsG0680032004.01.T01:CDS 35.0%
TAACACTCAACCAAATCCTA+AGG + Chr6:31782007-31782026 MsG0680032004.01.T01:intron 35.0%
TAGTGAATAGTCTAGAGAGA+GGG - Chr6:31779865-31779884 None:intergenic 35.0%
TATATAGGATCGTTTCCACA+GGG - Chr6:31780678-31780697 None:intergenic 35.0%
TCACCTTCTTTGTAGTATTG+AGG + Chr6:31780067-31780086 MsG0680032004.01.T01:intron 35.0%
TCTTCAAGTATGGCTTGATT+AGG - Chr6:31783180-31783199 None:intergenic 35.0%
TGAATGGTTGTTGGAATTGA+GGG - Chr6:31781784-31781803 None:intergenic 35.0%
TGATCAACCAACTTCTTTGA+TGG + Chr6:31781421-31781440 MsG0680032004.01.T01:CDS 35.0%
TGTTTCCTCATTCTTTGATC+GGG + Chr6:31781378-31781397 MsG0680032004.01.T01:CDS 35.0%
TTGAATGGTTGTTGGAATTG+AGG - Chr6:31781785-31781804 None:intergenic 35.0%
TTGGGAATTATTCGGTTGTT+GGG - Chr6:31781838-31781857 None:intergenic 35.0%
TTTGGGAATTATTCGGTTGT+TGG - Chr6:31781839-31781858 None:intergenic 35.0%
! TTGAAGTACTCGAAAGACAA+GGG + Chr6:31782979-31782998 MsG0680032004.01.T01:CDS 35.0%
! TTGGTGACCTTTGTATAAAG+CGG + Chr6:31782701-31782720 MsG0680032004.01.T01:CDS 35.0%
! TTTGAAGTACTCGAAAGACA+AGG + Chr6:31782978-31782997 MsG0680032004.01.T01:CDS 35.0%
!! TATTTTTCCGGCTGATTTTG+TGG + Chr6:31782810-31782829 MsG0680032004.01.T01:CDS 35.0%
!! TGGTTTTGCAAAGGATTTGT+CGG - Chr6:31782749-31782768 None:intergenic 35.0%
AAAGCTATAGCTACAAGGAG+TGG + Chr6:31782052-31782071 MsG0680032004.01.T01:CDS 40.0%
AAGCTATAGCTACAAGGAGT+GGG + Chr6:31782053-31782072 MsG0680032004.01.T01:CDS 40.0%
AATCAATTGAGCTGAAGTCG+GGG + Chr6:31781219-31781238 MsG0680032004.01.T01:CDS 40.0%
ACAAGTAGTTGAGAAGCAAG+TGG + Chr6:31782312-31782331 MsG0680032004.01.T01:CDS 40.0%
ACAATTCATGCAAGTGTCCA+TGG + Chr6:31781878-31781897 MsG0680032004.01.T01:intron 40.0%
ACCAAAACCAACAAAGACCT+TGG + Chr6:31781699-31781718 MsG0680032004.01.T01:intron 40.0%
ACTATGTGGGAAACCAACAA+AGG + Chr6:31781600-31781619 MsG0680032004.01.T01:CDS 40.0%
ACTTGGTATGAAGGAAGATG+AGG + Chr6:31781334-31781353 MsG0680032004.01.T01:CDS 40.0%
ATACTTAATCAGGCTGGACA+CGG + Chr6:31780322-31780341 MsG0680032004.01.T01:intron 40.0%
ATGAGAATGCTCTACCTATG+TGG + Chr6:31781153-31781172 MsG0680032004.01.T01:CDS 40.0%
ATGATTAACGTAACTCCCTG+TGG + Chr6:31780660-31780679 MsG0680032004.01.T01:intron 40.0%
ATGTGCCTATCTTAATGGGA+AGG + Chr6:31782857-31782876 MsG0680032004.01.T01:CDS 40.0%
ATTAGGAAGAACCTCCTTCA+AGG - Chr6:31783163-31783182 None:intergenic 40.0%
CAGAGATTGAGAAAACTGCT+AGG + Chr6:31780953-31780972 MsG0680032004.01.T01:intron 40.0%
CAGTCAAAGCTATAGCTACA+AGG + Chr6:31782047-31782066 MsG0680032004.01.T01:CDS 40.0%
CATCGAAGAAAGACAAAGAG+CGG + Chr6:31782365-31782384 MsG0680032004.01.T01:CDS 40.0%
CATTGAGACATCAAGGATCT+TGG + Chr6:31779985-31780004 MsG0680032004.01.T01:intron 40.0%
CGACTTCAGCTCAATTGATT+TGG - Chr6:31781219-31781238 None:intergenic 40.0%
CTAACCACTTGGTATAGTCT+TGG + Chr6:31780878-31780897 MsG0680032004.01.T01:intron 40.0%
CTCCTTCAAACACTCTTCAA+TGG - Chr6:31783133-31783152 None:intergenic 40.0%
CTTTGCAAAACCACTAGGTA+TGG + Chr6:31782756-31782775 MsG0680032004.01.T01:CDS 40.0%
GAAAAATTTCCGTTACTCCC+CGG - Chr6:31780763-31780782 None:intergenic 40.0%
GAATTGTTTCAAGACCTCCT+CGG - Chr6:31781865-31781884 None:intergenic 40.0%
GACTAGGATGATGTTGCAAT+TGG + Chr6:31782723-31782742 MsG0680032004.01.T01:CDS 40.0%
GAGGATGTGCCTATCTTAAT+GGG + Chr6:31782853-31782872 MsG0680032004.01.T01:CDS 40.0%
GGAGAGGAAGAATAAAGATG+TGG + Chr6:31782270-31782289 MsG0680032004.01.T01:CDS 40.0%
GGATGATGAAGTTGTCAATG+AGG + Chr6:31782123-31782142 MsG0680032004.01.T01:CDS 40.0%
GGGAAGGAATTTCATGCAAA+CGG + Chr6:31782873-31782892 MsG0680032004.01.T01:CDS 40.0%
GGTACTTAGAAAGCAAGCAA+AGG + Chr6:31780974-31780993 MsG0680032004.01.T01:intron 40.0%
GGTCAAGGTAAATGATGAAG+AGG + Chr6:31782933-31782952 MsG0680032004.01.T01:CDS 40.0%
TATACCATTCTCAGAAGCCT+TGG + Chr6:31782432-31782451 MsG0680032004.01.T01:CDS 40.0%
TATGGATGTCGAAGAAGATG+AGG + Chr6:31782834-31782853 MsG0680032004.01.T01:CDS 40.0%
TCATAACCAGTTTACCGGTA+TGG + Chr6:31781259-31781278 MsG0680032004.01.T01:CDS 40.0%
TCATTAGCCATGTCTACTTC+TGG - Chr6:31781131-31781150 None:intergenic 40.0%
TCCATAACCACAAAATCAGC+CGG - Chr6:31782820-31782839 None:intergenic 40.0%
TCCTAGTCCGCTTTATACAA+AGG - Chr6:31782711-31782730 None:intergenic 40.0%
TCGAGTACTTCAAAGCTTCT+CGG - Chr6:31782972-31782991 None:intergenic 40.0%
TCGGTGCATACTATATCACT+AGG + Chr6:31781062-31781081 MsG0680032004.01.T01:CDS 40.0%
TGAGAATGCTCTACCTATGT+GGG + Chr6:31781154-31781173 MsG0680032004.01.T01:CDS 40.0%
TGAGGATGTGCCTATCTTAA+TGG + Chr6:31782852-31782871 MsG0680032004.01.T01:CDS 40.0%
TGATGAAGTTGTCAATGAGG+AGG + Chr6:31782126-31782145 MsG0680032004.01.T01:CDS 40.0%
TGGGAATTATTCGGTTGTTG+GGG - Chr6:31781837-31781856 None:intergenic 40.0%
TGGTCAGTTAGCACAACAAA+TGG + Chr6:31781950-31781969 MsG0680032004.01.T01:intron 40.0%
TTACTTGTGGACTTTGTACG+GGG + Chr6:31781522-31781541 MsG0680032004.01.T01:CDS 40.0%
TTAGCACAACAAATGGCTCA+AGG + Chr6:31781957-31781976 MsG0680032004.01.T01:intron 40.0%
TTCACCAAGACTATACCAAG+TGG - Chr6:31780885-31780904 None:intergenic 40.0%
TTCATGAACTTCGCATAGAC+CGG - Chr6:31782466-31782485 None:intergenic 40.0%
TTCCTTCATACCAAGTGTAC+CGG - Chr6:31781330-31781349 None:intergenic 40.0%
TTGTAGGTCTTCGTTAGCAA+CGG - Chr6:31780926-31780945 None:intergenic 40.0%
TTTAGTGGTACAAGAGGAGA+TGG + Chr6:31782249-31782268 MsG0680032004.01.T01:CDS 40.0%
TTTCGGATACTTAATCAGGC+TGG + Chr6:31780316-31780335 MsG0680032004.01.T01:intron 40.0%
! ACAAAGGTCACCAACTCTTT+TGG - Chr6:31782695-31782714 None:intergenic 40.0%
! ACCTTTGTATAAAGCGGACT+AGG + Chr6:31782707-31782726 MsG0680032004.01.T01:CDS 40.0%
! AGGATTTGGTTGAGTGTTAG+CGG - Chr6:31782006-31782025 None:intergenic 40.0%
! ATCAACTTTGGCTTCTTCCT+TGG - Chr6:31783217-31783236 None:intergenic 40.0%
! CAAGGGTGCATGTTTCAAAA+TGG + Chr6:31782996-31783015 MsG0680032004.01.T01:CDS 40.0%
! CTAGCAGTTTTCTCAATCTC+TGG - Chr6:31780955-31780974 None:intergenic 40.0%
! CTTTTTATTCCTTCTCCGTC+AGG + Chr6:31781038-31781057 MsG0680032004.01.T01:intron 40.0%
! GGTAAAGCACTACTTGATCT+TGG + Chr6:31782637-31782656 MsG0680032004.01.T01:CDS 40.0%
! GGTTGTTGGTAGAAGTTTGA+TGG - Chr6:31781758-31781777 None:intergenic 40.0%
! TGGAAATAACGATGTCGCTT+TGG + Chr6:31780414-31780433 MsG0680032004.01.T01:intron 40.0%
! TGGTGAACTTTGTTTATGCG+AGG + Chr6:31780898-31780917 MsG0680032004.01.T01:intron 40.0%
! TGTTGGTAGAAGTTTGATGG+TGG - Chr6:31781755-31781774 None:intergenic 40.0%
!! CACTACAATTGGCATCGATT+TGG - Chr6:31782534-31782553 None:intergenic 40.0%
!! CATACCTAGTGGTTTTGCAA+AGG - Chr6:31782758-31782777 None:intergenic 40.0%
!! TACCTTGGTGTCATCAACTT+TGG - Chr6:31783229-31783248 None:intergenic 40.0%
!! TCGGTGCTTTGGGAATTATT+CGG - Chr6:31781846-31781865 None:intergenic 40.0%
!! TGCCATTGAAGAGTGTTTGA+AGG + Chr6:31783128-31783147 MsG0680032004.01.T01:CDS 40.0%
!!! AGGTCTTTGTTGGTTTTGGT+TGG - Chr6:31781699-31781718 None:intergenic 40.0%
!!! TCCAAGGTCTTTGTTGGTTT+TGG - Chr6:31781703-31781722 None:intergenic 40.0%
AAAGGCCTTGAAACGCAAGT+TGG + Chr6:31781930-31781949 MsG0680032004.01.T01:intron 45.0%
AAAGGTTCTTTCCGGAGGAT+AGG + Chr6:31781477-31781496 MsG0680032004.01.T01:CDS 45.0%
ACCAACTTCTATGTTACCGC+CGG + Chr6:31781308-31781327 MsG0680032004.01.T01:CDS 45.0%
ACTGACCAACTTGCGTTTCA+AGG - Chr6:31781938-31781957 None:intergenic 45.0%
AGACATCAAGGATCTTGGCA+TGG + Chr6:31779990-31780009 MsG0680032004.01.T01:intron 45.0%
AGAGTAGTAGGTAAAGGGGT+AGG + Chr6:31782076-31782095 MsG0680032004.01.T01:CDS 45.0%
AGTAGTTGAGAAGCAAGTGG+TGG + Chr6:31782315-31782334 MsG0680032004.01.T01:CDS 45.0%
AGTGGGAGAGTAGTAGGTAA+AGG + Chr6:31782070-31782089 MsG0680032004.01.T01:CDS 45.0%
ATAGTATGCACCGAACCTGA+CGG - Chr6:31781056-31781075 None:intergenic 45.0%
ATGAAGGAAGATGAGGAGGA+GGG + Chr6:31781341-31781360 MsG0680032004.01.T01:CDS 45.0%
ATGCAACTTCATCAAGGAGC+AGG + Chr6:31779725-31779744 MsG0680032004.01.T01:CDS 45.0%
CAAAGCTTCTCGGATGTTGA+AGG - Chr6:31782962-31782981 None:intergenic 45.0%
CATGATCCATACCGGTAAAC+TGG - Chr6:31781268-31781287 None:intergenic 45.0%
CCTAACCAACAACAACAAGC+CGG + Chr6:31781623-31781642 MsG0680032004.01.T01:CDS 45.0%
CCTAAGAAAGAGCAAGATCC+GGG + Chr6:31782574-31782593 MsG0680032004.01.T01:CDS 45.0%
CGCTCTTTGTCTTTCTTCGA+TGG - Chr6:31782367-31782386 None:intergenic 45.0%
CGGAACCTCACAACAAAATC+CGG + Chr6:31781643-31781662 MsG0680032004.01.T01:CDS 45.0%
CTCTTCCCCTTCAAAAGAAC+CGG - Chr6:31781576-31781595 None:intergenic 45.0%
CTTTCTTCGATGGAGCATGT+GGG - Chr6:31782357-31782376 None:intergenic 45.0%
GAAAGCAAGCAAAGGAAGCT+AGG + Chr6:31780982-31781001 MsG0680032004.01.T01:intron 45.0%
GAAGGAGCTAGATTCCTTGA+AGG + Chr6:31783146-31783165 MsG0680032004.01.T01:CDS 45.0%
GAGTGAACCAGAAGTAGACA+TGG + Chr6:31781121-31781140 MsG0680032004.01.T01:CDS 45.0%
GCCTAAGAAAGAGCAAGATC+CGG + Chr6:31782573-31782592 MsG0680032004.01.T01:CDS 45.0%
GCTATTGGCACAACACATGT+AGG + Chr6:31782616-31782635 MsG0680032004.01.T01:CDS 45.0%
GGAACCTCACAACAAAATCC+GGG + Chr6:31781644-31781663 MsG0680032004.01.T01:CDS 45.0%
GGAATTGAGGGTAAGGTTGT+TGG - Chr6:31781772-31781791 None:intergenic 45.0%
GGAATTTCATGCAAACGGCT+CGG + Chr6:31782878-31782897 MsG0680032004.01.T01:CDS 45.0%
GGAGGATAGTGTAGAGATAG+AGG + Chr6:31782165-31782184 MsG0680032004.01.T01:CDS 45.0%
GGATAGTGTAGAGATAGAGG+AGG + Chr6:31782168-31782187 MsG0680032004.01.T01:CDS 45.0%
GGATCGAACTATTTCGCTTG+CGG - Chr6:31780545-31780564 None:intergenic 45.0%
GGGAATTATTCGGTTGTTGG+GGG - Chr6:31781836-31781855 None:intergenic 45.0%
GGTTGTTGGAATTGAGGGTA+AGG - Chr6:31781779-31781798 None:intergenic 45.0%
GTACTTCCAACTTCCAAGGA+AGG + Chr6:31781666-31781685 MsG0680032004.01.T01:intron 45.0%
GTGGGAGAGTAGTAGGTAAA+GGG + Chr6:31782071-31782090 MsG0680032004.01.T01:CDS 45.0%
GTGTTCTCCAAGGTCTTTGT+TGG - Chr6:31781709-31781728 None:intergenic 45.0%
GTTTACCGGTATGGATCATG+AGG + Chr6:31781268-31781287 MsG0680032004.01.T01:CDS 45.0%
TACTTGTGGACTTTGTACGG+GGG + Chr6:31781523-31781542 MsG0680032004.01.T01:CDS 45.0%
TATGAAGGAAGATGAGGAGG+AGG + Chr6:31781340-31781359 MsG0680032004.01.T01:CDS 45.0%
TATTCCTTCTCCGTCAGGTT+CGG + Chr6:31781043-31781062 MsG0680032004.01.T01:intron 45.0%
TCAAGAAAGGTTCTTTCCGG+AGG + Chr6:31781472-31781491 MsG0680032004.01.T01:CDS 45.0%
TCCTCATTCTTTGATCGGGA+AGG + Chr6:31781382-31781401 MsG0680032004.01.T01:CDS 45.0%
TCTTCCCCTTCAAAAGAACC+GGG - Chr6:31781575-31781594 None:intergenic 45.0%
TCTTTCTTCGATGGAGCATG+TGG - Chr6:31782358-31782377 None:intergenic 45.0%
TGCAACTTCATCAAGGAGCA+GGG + Chr6:31779726-31779745 MsG0680032004.01.T01:CDS 45.0%
TGGATCCTCATGATCCATAC+CGG - Chr6:31781276-31781295 None:intergenic 45.0%
TGGGAGAGTAGTAGGTAAAG+GGG + Chr6:31782072-31782091 MsG0680032004.01.T01:CDS 45.0%
TGGTATGAAGGAAGATGAGG+AGG + Chr6:31781337-31781356 MsG0680032004.01.T01:CDS 45.0%
TGTGTTGTGCCAATAGCTAC+CGG - Chr6:31782613-31782632 None:intergenic 45.0%
TTCTTTGATCGGGAAGGCTA+AGG + Chr6:31781388-31781407 MsG0680032004.01.T01:CDS 45.0%
TTGCGTTTCAAGGCCTTTGA+TGG - Chr6:31781928-31781947 None:intergenic 45.0%
TTGTCCGTTGCCAAAAGAGT+TGG + Chr6:31782682-31782701 MsG0680032004.01.T01:CDS 45.0%
TTGTGGTGCTCCTTAGGATT+TGG - Chr6:31782020-31782039 None:intergenic 45.0%
TTGTTGGGGGTTATTTGTGG+TGG - Chr6:31781823-31781842 None:intergenic 45.0%
TTGTTGTACGGTGTTCTCCA+AGG - Chr6:31781719-31781738 None:intergenic 45.0%
! ACTCTTTTGGCAACGGACAA+AGG - Chr6:31782682-31782701 None:intergenic 45.0%
! GTCACCAACTCTTTTGGCAA+CGG - Chr6:31782689-31782708 None:intergenic 45.0%
! GTTGTTGGTTAGGCCTTTGT+TGG - Chr6:31781616-31781635 None:intergenic 45.0%
!! AAATCCTAAGGAGCACCACA+AGG + Chr6:31782019-31782038 MsG0680032004.01.T01:intron 45.0%
!! AGCCAAAGTTGATGACACCA+AGG + Chr6:31783224-31783243 MsG0680032004.01.T01:CDS 45.0%
!! AGTACCCGGATTTTGTTGTG+AGG - Chr6:31781651-31781670 None:intergenic 45.0%
!! CAACTTCCAAGGAAGGTATC+CGG + Chr6:31781673-31781692 MsG0680032004.01.T01:intron 45.0%
!! CGGATTTTGTTGTGAGGTTC+CGG - Chr6:31781645-31781664 None:intergenic 45.0%
!! GAATAATTCCCAAAGCACCG+AGG + Chr6:31781845-31781864 MsG0680032004.01.T01:intron 45.0%
!! GGGGTTATTTGTGGTGGATT+TGG - Chr6:31781817-31781836 None:intergenic 45.0%
!! TCCGGCTGATTTTGTGGTTA+TGG + Chr6:31782816-31782835 MsG0680032004.01.T01:CDS 45.0%
!! TCTACTTCTGGTTCACTCCT+CGG - Chr6:31781119-31781138 None:intergenic 45.0%
!!! CTTTGTTGGTTTTGGTTGGC+CGG - Chr6:31781695-31781714 None:intergenic 45.0%
!!! GGTGTTTTTCTGGTTAGCCA+TGG - Chr6:31781898-31781917 None:intergenic 45.0%
ACAAAGAGCGGCAATACGCA+AGG + Chr6:31782377-31782396 MsG0680032004.01.T01:CDS 50.0%
ACAAGGAGTGGGAGAGTAGT+AGG + Chr6:31782064-31782083 MsG0680032004.01.T01:CDS 50.0%
ACATCTTCGGCCATACCTAG+TGG - Chr6:31782769-31782788 None:intergenic 50.0%
ACCGGCGGTAACATAGAAGT+TGG - Chr6:31781312-31781331 None:intergenic 50.0%
AGAAGCCTTGGAGCAAATGC+CGG + Chr6:31782444-31782463 MsG0680032004.01.T01:CDS 50.0%
AGGGGAAGAGGTCAACTATG+TGG + Chr6:31781586-31781605 MsG0680032004.01.T01:CDS 50.0%
ATAGACCGGCATTTGCTCCA+AGG - Chr6:31782452-31782471 None:intergenic 50.0%
CCCGGATCTTGCTCTTTCTT+AGG - Chr6:31782577-31782596 None:intergenic 50.0%
CCCTTCAAAAGAACCGGGTT+CGG - Chr6:31781570-31781589 None:intergenic 50.0%
CCTTCAAAAGAACCGGGTTC+GGG - Chr6:31781569-31781588 None:intergenic 50.0%
CGGATACCTTCCTTGGAAGT+TGG - Chr6:31781675-31781694 None:intergenic 50.0%
CGGTTGTTGGGGGTTATTTG+TGG - Chr6:31781826-31781845 None:intergenic 50.0%
CTTCATACCAAGTGTACCGG+CGG - Chr6:31781327-31781346 None:intergenic 50.0%
CTTCTGCACATTCATCTCCG+AGG + Chr6:31781099-31781118 MsG0680032004.01.T01:CDS 50.0%
GCCTTCCCGATCAAAGAATG+AGG - Chr6:31781386-31781405 None:intergenic 50.0%
GCTACGTGGCAAGACTTCAT+TGG + Chr6:31779748-31779767 MsG0680032004.01.T01:CDS 50.0%
GCTTTGACTGCTATGCCTTG+TGG - Chr6:31782037-31782056 None:intergenic 50.0%
GGACAAAGAGAAGTTCGAGG+AGG + Chr6:31782147-31782166 MsG0680032004.01.T01:CDS 50.0%
GGAGCTAGATTCCTTGAAGG+AGG + Chr6:31783149-31783168 MsG0680032004.01.T01:CDS 50.0%
GGAGGACAAAGAGAAGTTCG+AGG + Chr6:31782144-31782163 MsG0680032004.01.T01:CDS 50.0%
GGGGAAGAGGTCAACTATGT+GGG + Chr6:31781587-31781606 MsG0680032004.01.T01:CDS 50.0%
GTCACTCTACCGGTAGCTAT+TGG + Chr6:31782601-31782620 MsG0680032004.01.T01:CDS 50.0%
TATGCCTTGTGGTGCTCCTT+AGG - Chr6:31782026-31782045 None:intergenic 50.0%
TATGTTACCGCCGGTACACT+TGG + Chr6:31781317-31781336 MsG0680032004.01.T01:CDS 50.0%
TGGTACAAGAGGAGATGGAG+AGG + Chr6:31782254-31782273 MsG0680032004.01.T01:CDS 50.0%
TTCGATGGAGCATGTGGGTA+TGG - Chr6:31782352-31782371 None:intergenic 50.0%
! AGGAAGCTAGGAGATTAGCC+AGG + Chr6:31780994-31781013 MsG0680032004.01.T01:intron 50.0%
! CCAAGATTAGCTAGCCTCCT+CGG - Chr6:31781185-31781204 None:intergenic 50.0%
! CCGAACCCGGTTCTTTTGAA+GGG + Chr6:31781567-31781586 MsG0680032004.01.T01:CDS 50.0%
! GTCCACCAAAGCACTCTCAA+GGG - Chr6:31783076-31783095 None:intergenic 50.0%
! TCCACCAAAGCACTCTCAAG+GGG - Chr6:31783075-31783094 None:intergenic 50.0%
! TGCTCCAAGGCTTCTGAGAA+TGG - Chr6:31782439-31782458 None:intergenic 50.0%
!! AACACCCCTTGAGAGTGCTT+TGG + Chr6:31783068-31783087 MsG0680032004.01.T01:CDS 50.0%
!! AGGTTCCGGCTTGTTGTTGT+TGG - Chr6:31781631-31781650 None:intergenic 50.0%
!! CCGGCTTGTTGTTGTTGGTT+AGG - Chr6:31781626-31781645 None:intergenic 50.0%
!! CCTTGGAAGTTGGAAGTACC+CGG - Chr6:31781665-31781684 None:intergenic 50.0%
!! CGAACCCGGTTCTTTTGAAG+GGG + Chr6:31781568-31781587 MsG0680032004.01.T01:CDS 50.0%
!! CGGTTCTTTTGAAGGGGAAG+AGG + Chr6:31781574-31781593 MsG0680032004.01.T01:CDS 50.0%
!! TAATTCCCAAAGCACCGAGG+AGG + Chr6:31781848-31781867 MsG0680032004.01.T01:intron 50.0%
!! TACCTATGTGGGTTAGTCCG+AGG + Chr6:31781165-31781184 MsG0680032004.01.T01:CDS 50.0%
AACACCGACGCGTCCATCAA+AGG + Chr6:31781912-31781931 MsG0680032004.01.T01:intron 55.0%
ACCGGTAGAGTGACTCTTCC+CGG - Chr6:31782595-31782614 None:intergenic 55.0%
ATCAAAATGGCGCCGTTGCC+GGG + Chr6:31780742-31780761 MsG0680032004.01.T01:intron 55.0%
CATCAAAATGGCGCCGTTGC+CGG + Chr6:31780741-31780760 MsG0680032004.01.T01:intron 55.0%
CCGGGTACTTCCAACTTCCA+AGG + Chr6:31781662-31781681 MsG0680032004.01.T01:intron 55.0%
CGCCGGTACACTTGGTATGA+AGG + Chr6:31781325-31781344 MsG0680032004.01.T01:CDS 55.0%
CTCCTCGGACTAACCCACAT+AGG - Chr6:31781170-31781189 None:intergenic 55.0%
GCCTCAAGATGCCTATCCTC+CGG - Chr6:31781491-31781510 None:intergenic 55.0%
GCGGTGAAAGCTCCCAATTG+CGG - Chr6:31781987-31782006 None:intergenic 55.0%
GCTCAAGGTCCTCCGCAATT+GGG + Chr6:31781972-31781991 MsG0680032004.01.T01:intron 55.0%
GTGAAAGCTCCCAATTGCGG+AGG - Chr6:31781984-31782003 None:intergenic 55.0%
TCCGGAGGATAGGCATCTTG+AGG + Chr6:31781487-31781506 MsG0680032004.01.T01:CDS 55.0%
TCCGGGAAGAGTCACTCTAC+CGG + Chr6:31782591-31782610 MsG0680032004.01.T01:CDS 55.0%
TGATCGGGAAGGCTAAGGAG+TGG + Chr6:31781393-31781412 MsG0680032004.01.T01:CDS 55.0%
TTTCCGTTACTCCCCGGCAA+CGG - Chr6:31780757-31780776 None:intergenic 55.0%
! AAGGCCTTTGATGGACGCGT+CGG - Chr6:31781919-31781938 None:intergenic 55.0%
! AGCTAGGAGATTAGCCAGGC+TGG + Chr6:31780998-31781017 MsG0680032004.01.T01:intron 55.0%
! CCCGAACCCGGTTCTTTTGA+AGG + Chr6:31781566-31781585 MsG0680032004.01.T01:CDS 55.0%
! CCGAGGAGGCTAGCTAATCT+TGG + Chr6:31781182-31781201 MsG0680032004.01.T01:CDS 55.0%
! CGTCCACCAAAGCACTCTCA+AGG - Chr6:31783077-31783096 None:intergenic 55.0%
!! ACCCCTTGAGAGTGCTTTGG+TGG + Chr6:31783071-31783090 MsG0680032004.01.T01:CDS 55.0%
!! CAAGACCTCCTCGGTGCTTT+GGG - Chr6:31781856-31781875 None:intergenic 55.0%
!! CGATGTCGCTTTGGACACGA+AGG + Chr6:31780423-31780442 MsG0680032004.01.T01:intron 55.0%
!! CTATGTGGGTTAGTCCGAGG+AGG + Chr6:31781168-31781187 MsG0680032004.01.T01:CDS 55.0%
!! TCAAGACCTCCTCGGTGCTT+TGG - Chr6:31781857-31781876 None:intergenic 55.0%
!! TGGACGCGTCGGTGTTTTTC+TGG - Chr6:31781908-31781927 None:intergenic 55.0%
ACCGGCTATTGTCCCGAACC+CGG + Chr6:31781554-31781573 MsG0680032004.01.T01:CDS 60.0%
ACCGGGTTCGGGACAATAGC+CGG - Chr6:31781558-31781577 None:intergenic 60.0%
CATCAAGGAGCAGGGCTACG+TGG + Chr6:31779734-31779753 MsG0680032004.01.T01:CDS 60.0%
GGCTCAAGGTCCTCCGCAAT+TGG + Chr6:31781971-31781990 MsG0680032004.01.T01:intron 60.0%
GGTTCGGGACAATAGCCGGT+GGG - Chr6:31781554-31781573 None:intergenic 60.0%
TCAAAATGGCGCCGTTGCCG+GGG + Chr6:31780743-31780762 MsG0680032004.01.T01:intron 60.0%
TGCACCGAACCTGACGGAGA+AGG - Chr6:31781050-31781069 None:intergenic 60.0%
TGTACGGGGGATCATCCCAC+CGG + Chr6:31781536-31781555 MsG0680032004.01.T01:CDS 60.0%
! ATTAGCCAGGCTGGCTCAGC+CGG + Chr6:31781007-31781026 MsG0680032004.01.T01:intron 60.0%
! GGTTGGCCGGATACCTTCCT+TGG - Chr6:31781682-31781701 None:intergenic 60.0%
AGATTCCGGCTGAGCCAGCC+TGG - Chr6:31781015-31781034 None:intergenic 65.0%
GGGTTCGGGACAATAGCCGG+TGG - Chr6:31781555-31781574 None:intergenic 65.0%
GCGCCGTTGCCGGGGAGTAA+CGG + Chr6:31780751-31780770 MsG0680032004.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 31779725 31783275 31779725 ID=MsG0680032004.01;Name=MsG0680032004.01
Chr6 mRNA 31779725 31783275 31779725 ID=MsG0680032004.01.T01;Parent=MsG0680032004.01;Name=MsG0680032004.01.T01;_AED=0.37;_eAED=0.38;_QI=0|0|0|0.66|1|1|3|0|653
Chr6 exon 31779725 31779833 31779725 ID=MsG0680032004.01.T01:exon:15551;Parent=MsG0680032004.01.T01
Chr6 exon 31781060 31781665 31781060 ID=MsG0680032004.01.T01:exon:15552;Parent=MsG0680032004.01.T01
Chr6 exon 31782029 31783275 31782029 ID=MsG0680032004.01.T01:exon:15553;Parent=MsG0680032004.01.T01
Chr6 CDS 31779725 31779833 31779725 ID=MsG0680032004.01.T01:cds;Parent=MsG0680032004.01.T01
Chr6 CDS 31781060 31781665 31781060 ID=MsG0680032004.01.T01:cds;Parent=MsG0680032004.01.T01
Chr6 CDS 31782029 31783275 31782029 ID=MsG0680032004.01.T01:cds;Parent=MsG0680032004.01.T01
Gene Sequence

>MsG0680032004.01.T01

ATGCAACTTCATCAAGGAGCAGGGCTACGTGGCAAGACTTCATTGGCCATTGTTAGATATTTAGGCTTCTCGCTTGAGCGAGATGTATCTCGCTTAAGCGAGATTACACGTTCGGTGCATACTATATCACTAGGTGATTCTTCACATTCTTCTGCACATTCATCTCCGAGGAGTGAACCAGAAGTAGACATGGCTAATGAAGATGAGAATGCTCTACCTATGTGGGTTAGTCCGAGGAGGCTAGCTAATCTTGGCAATCGTAATGCCAAATCAATTGAGCTGAAGTCGGGGTTGATAAACTTGATAACTCATAACCAGTTTACCGGTATGGATCATGAGGATCCATATAGACATCTTACCAACTTCTATGTTACCGCCGGTACACTTGGTATGAAGGAAGATGAGGAGGAGGGTGTGTTTGTGCAATTGTTTCCTCATTCTTTGATCGGGAAGGCTAAGGAGTGGTATCTTGATCAACCAACTTCTTTGATGGAAAATTGGGGTGAGCTAGAGAAAGCATTTCAAGAAAGGTTCTTTCCGGAGGATAGGCATCTTGAGGCTAAAACTTCAATTACTTGTGGACTTTGTACGGGGGATCATCCCACCGGCTATTGTCCCGAACCCGGTTCTTTTGAAGGGGAAGAGGTCAACTATGTGGGAAACCAACAAAGGCCTAACCAACAACAACAAGCCGGAACCTCACAACAAAATCCGGGAGCACCACAAGGCATAGCAGTCAAAGCTATAGCTACAAGGAGTGGGAGAGTAGTAGGTAAAGGGGTAGGTGATGATATTGTTGTTGAAGAGAAGGATGATGAAGTTGTCAATGAGGAGGACAAAGAGAAGTTCGAGGAGGATAGTGTAGAGATAGAGGAGGAAGTGTATATAAAGAATAAAGAAGCATTAGTTGAAAAAGAAAAAAATCAAAAAAGAGATTTAGTGGTACAAGAGGAGATGGAGAGGAAGAATAAAGATGTGGGGAAAGATAAAGGGAAGAAACAAGTAGTTGAGAAGCAAGTGGTGGCTCAACGCTTACCATACCCACATGCTCCATCGAAGAAAGACAAAGAGCGGCAATACGCAAGGTTTCTTGAACTCTTCAAGAAGTTGCAAATTGATATACCATTCTCAGAAGCCTTGGAGCAAATGCCGGTCTATGCGAAGTTCATGAAAGATATCCTTTCCAAGAAAAGAAGAATCAACGATGAAGAGACGATCCAAATCGATGCCAATTGTAGTGCTATTATTCAAAGAACGTTGCCTAAGAAAGAGCAAGATCCGGGAAGAGTCACTCTACCGGTAGCTATTGGCACAACACATGTAGGTAAAGCACTACTTGATCTTGGATCAAGCATCAATCTCATGCCTTTGTCCGTTGCCAAAAGAGTTGGTGACCTTTGTATAAAGCGGACTAGGATGATGTTGCAATTGGCCGACAAATCCTTTGCAAAACCACTAGGTATGGCCGAAGATGTTCTTGTAAAAGTGGACAAATTTATTTTTCCGGCTGATTTTGTGGTTATGGATGTCGAAGAAGATGAGGATGTGCCTATCTTAATGGGAAGGAATTTCATGCAAACGGCTCGGATGATGATTGATCTTGATGATAATATCATGAAGGTCAAGGTAAATGATGAAGAGGTTACCTTCAACATCCGAGAAGCTTTGAAGTACTCGAAAGACAAGGGTGCATGTTTCAAAATGGATGCAACCGAAGAAGTCATCTTGACTACTCGGAAGCAAATGCACAATAGAACACCCCTTGAGAGTGCTTTGGTGGACGCACTCAATGCTATTGATGAAGACGAAGCAAGTGCCATTGAAGAGTGTTTGAAGGAGCTAGATTCCTTGAAGGAGGTTCTTCCTAATCAAGCCATACTTGAAGATTTGAAAGAAGAATCCAAGGAAGAAGCCAAAGTTGATGACACCAAGGTAGAATTAAATGTTTACCATCTAATTTGA
Protein sequence

>MsG0680032004.01.T01

MQLHQGAGLRGKTSLAIVRYLGFSLERDVSRLSEITRSVHTISLGDSSHSSAHSSPRSEPEVDMANEDENALPMWVSPRRLANLGNRNAKSIELKSGLINLITHNQFTGMDHEDPYRHLTNFYVTAGTLGMKEDEEEGVFVQLFPHSLIGKAKEWYLDQPTSLMENWGELEKAFQERFFPEDRHLEAKTSITCGLCTGDHPTGYCPEPGSFEGEEVNYVGNQQRPNQQQQAGTSQQNPGAPQGIAVKAIATRSGRVVGKGVGDDIVVEEKDDEVVNEEDKEKFEEDSVEIEEEVYIKNKEALVEKEKNQKRDLVVQEEMERKNKDVGKDKGKKQVVEKQVVAQRLPYPHAPSKKDKERQYARFLELFKKLQIDIPFSEALEQMPVYAKFMKDILSKKRRINDEETIQIDANCSAIIQRTLPKKEQDPGRVTLPVAIGTTHVGKALLDLGSSINLMPLSVAKRVGDLCIKRTRMMLQLADKSFAKPLGMAEDVLVKVDKFIFPADFVVMDVEEDEDVPILMGRNFMQTARMMIDLDDNIMKVKVNDEEVTFNIREALKYSKDKGACFKMDATEEVILTTRKQMHNRTPLESALVDALNAIDEDEASAIEECLKELDSLKEVLPNQAILEDLKEESKEEAKVDDTKVELNVYHLI*