AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680032194.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032194.01.T01 MTR_6g038020 97.585 414 10 0 52 465 9 422 0.0 839
MsG0680032194.01.T01 MTR_6g038020 89.247 465 4 1 1 465 1 419 0.0 839
MsG0680032194.01.T01 MTR_1g098390 80.929 409 72 4 59 465 15 419 0.0 692
MsG0680032194.01.T01 MTR_6g033315 52.798 411 163 10 52 450 23 414 5.26e-144 419
MsG0680032194.01.T01 MTR_7g083480 54.750 400 156 8 58 450 29 410 3.68e-135 396
MsG0680032194.01.T01 MTR_3g098840 48.731 394 170 7 60 449 32 397 2.69e-122 363
MsG0680032194.01.T01 MTR_7g088360 45.995 387 179 9 59 429 39 411 1.75e-108 327
MsG0680032194.01.T01 MTR_7g088350 51.020 294 134 3 58 347 34 321 4.02e-104 318
MsG0680032194.01.T01 MTR_4g023760 28.374 289 168 11 74 352 24 283 3.30e-23 99.8
MsG0680032194.01.T01 MTR_1g094610 34.146 205 91 7 115 313 52 218 1.76e-20 91.7
MsG0680032194.01.T01 MTR_4g021795 31.527 203 107 7 111 307 52 228 3.91e-20 90.9
MsG0680032194.01.T01 MTR_7g114080 29.851 201 101 5 122 309 124 297 7.70e-20 91.7
MsG0680032194.01.T01 MTR_7g114080 28.708 209 102 5 122 309 124 306 9.48e-19 88.2
MsG0680032194.01.T01 MTR_5g023230 33.962 159 91 3 180 331 145 296 2.92e-17 83.2
MsG0680032194.01.T01 MTR_5g023230 33.962 159 91 3 180 331 165 316 3.93e-17 82.8
MsG0680032194.01.T01 MTR_7g114080 28.922 204 98 5 122 304 124 301 5.55e-17 82.0
MsG0680032194.01.T01 MTR_4g116160 35.294 119 63 3 114 232 321 425 5.87e-17 84.0
MsG0680032194.01.T01 MTR_7g118050 30.455 220 118 8 126 332 77 274 8.18e-17 81.3
MsG0680032194.01.T01 MTR_4g116160 35.294 119 63 3 114 232 148 252 8.36e-17 82.8
MsG0680032194.01.T01 MTR_4g116160 35.294 119 63 3 114 232 321 425 1.01e-16 82.8
MsG0680032194.01.T01 MTR_4g092760 33.600 125 69 3 113 237 307 417 1.48e-15 79.3
MsG0680032194.01.T01 MTR_7g114080 37.190 121 49 3 122 241 124 218 1.74e-15 77.8
MsG0680032194.01.T01 MTR_4g092760 50.909 55 27 0 183 237 274 328 1.42e-14 75.9
MsG0680032194.01.T01 MTR_7g118050 34.286 105 52 2 126 226 77 168 8.25e-14 70.9
MsG0680032194.01.T01 MTR_1g112830 32.895 152 85 6 183 324 461 605 4.17e-13 72.0
MsG0680032194.01.T01 MTR_5g023230 42.857 63 36 0 180 242 165 227 4.20e-13 69.3
MsG0680032194.01.T01 MTR_1g085980 30.075 133 83 3 182 304 155 287 1.12e-11 67.0
MsG0680032194.01.T01 MTR_4g082560 29.771 131 82 2 184 304 180 310 2.11e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032194.01.T01 AT4G24630 66.667 414 106 8 59 464 14 403 0.0 560
MsG0680032194.01.T01 AT5G50020 65.207 411 127 5 59 465 44 442 0.0 541
MsG0680032194.01.T01 AT5G50020 65.207 411 127 5 59 465 14 412 0.0 541
MsG0680032194.01.T01 AT5G50020 63.747 411 126 6 59 465 14 405 0.0 520
MsG0680032194.01.T01 AT3G26935 53.102 403 160 9 60 450 30 415 5.79e-143 417
MsG0680032194.01.T01 AT5G41060 49.747 396 177 8 60 452 15 391 5.58e-124 367
MsG0680032194.01.T01 AT5G41060 49.746 394 176 8 60 450 30 404 1.25e-123 366
MsG0680032194.01.T01 AT3G48760 46.851 397 193 6 60 448 39 425 7.38e-120 359
MsG0680032194.01.T01 AT3G56930 54.608 293 129 4 58 347 19 310 9.17e-109 330
MsG0680032194.01.T01 AT5G41060 50.427 351 145 9 107 450 9 337 2.69e-108 325
MsG0680032194.01.T01 AT5G41060 50.427 351 145 9 107 450 9 337 2.69e-108 325
MsG0680032194.01.T01 AT5G05070 46.110 347 173 5 48 392 36 370 6.00e-101 308
MsG0680032194.01.T01 AT3G56920 50.865 289 136 2 59 347 20 302 2.92e-94 288
MsG0680032194.01.T01 AT2G40990 46.154 325 163 5 58 380 37 351 7.79e-92 285
MsG0680032194.01.T01 AT3G56930 47.603 292 115 3 58 347 19 274 7.92e-89 278
MsG0680032194.01.T01 AT3G60800 28.947 266 160 8 74 329 24 270 1.65e-21 95.1
MsG0680032194.01.T01 AT3G04970 35.948 153 78 2 183 315 73 225 9.92e-20 90.1
MsG0680032194.01.T01 AT2G14255 26.336 262 162 9 75 324 273 515 6.40e-19 89.7
MsG0680032194.01.T01 AT3G04970 35.948 153 78 2 183 315 160 312 6.64e-19 89.0
MsG0680032194.01.T01 AT3G51390 29.804 255 137 6 104 330 68 308 1.65e-17 84.0
MsG0680032194.01.T01 AT3G51390 30.400 250 137 6 104 330 68 303 2.51e-17 83.6
MsG0680032194.01.T01 AT3G09320 30.286 175 97 4 131 304 66 216 6.88e-17 81.3
MsG0680032194.01.T01 AT3G04970 36.620 142 70 2 183 304 160 301 1.82e-16 80.5
MsG0680032194.01.T01 AT5G20350 29.020 255 143 8 110 351 318 547 6.88e-16 80.9
MsG0680032194.01.T01 AT4G00840 27.206 272 155 11 75 332 16 258 2.08e-15 77.0
MsG0680032194.01.T01 AT5G04270 37.398 123 71 3 185 306 94 211 5.67e-15 75.5
MsG0680032194.01.T01 AT4G22750 27.586 232 133 10 109 329 53 260 1.01e-14 75.1
MsG0680032194.01.T01 AT4G00840 29.936 157 87 5 75 226 16 154 1.40e-14 73.2
MsG0680032194.01.T01 AT1G69420 33.588 131 77 3 184 304 164 294 6.59e-14 74.3
MsG0680032194.01.T01 AT1G69420 33.588 131 77 3 184 304 164 294 6.59e-14 74.3

Find 122 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTTCATTTGTACCTTAT+TGG 0.132036 6:-35919488 MsG0680032194.01.T01:CDS
CAACTTGAGTGCCTTTCTTC+TGG 0.216872 6:+35918454 None:intergenic
TAATGCAGGATATGCTATTT+TGG 0.232630 6:-35921804 MsG0680032194.01.T01:CDS
TTTGGAGGAAGGCTTATATT+TGG 0.242710 6:-35921932 MsG0680032194.01.T01:CDS
CTTATGCAGAAATTCCTATT+TGG 0.242865 6:-35921950 MsG0680032194.01.T01:CDS
TGGTTTGTTGGTGGACTAAC+TGG 0.249837 6:-35919509 MsG0680032194.01.T01:CDS
CATATCAACTTTAGGTGATA+TGG 0.265222 6:-35918314 MsG0680032194.01.T01:three_prime_UTR
CTTCTTTATGTTTGTTTCTT+CGG 0.274672 6:-35919675 MsG0680032194.01.T01:CDS
CTACATCTTGTTCCGGTTCC+CGG 0.277455 6:+35918665 None:intergenic
TCACAATACTTCACTCTTAC+AGG 0.310041 6:+35919954 None:intergenic
TTCATCTCTTTGTGGTTTGT+TGG 0.320209 6:-35919521 MsG0680032194.01.T01:CDS
CCTTACTTCGGCACGTGATC+CGG 0.326500 6:-35920111 MsG0680032194.01.T01:CDS
CGTCCGTTTCTATTGACATT+GGG 0.329652 6:-35920037 MsG0680032194.01.T01:CDS
TTGTGTAGCATATCAACTTT+AGG 0.336045 6:-35918322 MsG0680032194.01.T01:three_prime_UTR
TAAGTCATTGCTTATCAGTT+TGG 0.341091 6:-35921900 MsG0680032194.01.T01:CDS
TTGGAGGAAGGCTTATATTT+GGG 0.342992 6:-35921931 MsG0680032194.01.T01:CDS
CTTTCTTCTGGTTGAACTGT+TGG 0.346145 6:+35918466 None:intergenic
CATACTGTTTCATCTCTTTG+TGG 0.349726 6:-35919529 MsG0680032194.01.T01:CDS
GCCCGAAAATTGTTCCTTGA+AGG 0.354528 6:+35918736 None:intergenic
TCTGAAGGTGATTCAGTTCT+GGG 0.366444 6:-35918505 MsG0680032194.01.T01:CDS
ATCTGAAGGTGATTCAGTTC+TGG 0.367714 6:-35918506 MsG0680032194.01.T01:CDS
TTTGGTGCTGGTCATAGTTC+CGG 0.370556 6:-35921882 MsG0680032194.01.T01:CDS
AGTTTCAGTTACATTTGAAT+TGG 0.378536 6:+35918390 None:intergenic
CAAATTACCGATTGGGTAGA+TGG 0.385497 6:+35923786 None:intergenic
GGACCTGGTTTGTGCCAATA+AGG 0.387310 6:+35919474 None:intergenic
TTCAACACAATTGTTGCAAA+TGG 0.388663 6:+35919890 None:intergenic
GTACAAAAGTGAAGCCTTCA+AGG 0.396146 6:-35918750 MsG0680032194.01.T01:CDS
ATCTCTTTGTGGTTTGTTGG+TGG 0.397741 6:-35919518 MsG0680032194.01.T01:CDS
TTTGAATTGGCAAGTACATC+TGG 0.401633 6:+35918403 None:intergenic
CCCTGCATCTGTCATACTAA+TGG 0.405511 6:-35919552 MsG0680032194.01.T01:CDS
CTTACTTCGGCACGTGATCC+GGG 0.407888 6:-35920110 MsG0680032194.01.T01:CDS
ATATAAGCCTTCCTCCAAAT+AGG 0.409248 6:+35921936 None:intergenic
CCTTCAGATGCATTGTTGTA+AGG 0.410086 6:+35918520 None:intergenic
TTCGATACAGAGCAGATAAC+AGG 0.416428 6:-35918822 MsG0680032194.01.T01:CDS
ATATCAACTTTAGGTGATAT+GGG 0.433238 6:-35918313 MsG0680032194.01.T01:three_prime_UTR
GGTACAGAGGCCACCTCCTC+GGG 0.434926 6:-35918698 MsG0680032194.01.T01:CDS
TATTCGTAGCAAGGCATCTT+CGG 0.437918 6:-35921844 MsG0680032194.01.T01:CDS
GCCGCTGTGATATCTTTAAT+AGG 0.440693 6:+35918593 None:intergenic
CCTTGGGTTGGCCAATGCAT+TGG 0.441941 6:-35919849 MsG0680032194.01.T01:CDS
AATACACAAAAGATGATAAC+CGG 0.442059 6:+35921863 None:intergenic
TTCAATTCACATTCCTATAA+CGG 0.442233 6:+35918234 None:intergenic
GCCATTAGTATGACAGATGC+AGG 0.445585 6:+35919551 None:intergenic
GGTAGTTACCACCCGGGAAC+CGG 0.446774 6:-35918677 MsG0680032194.01.T01:CDS
GTCTAGATCATCTTCAACCT+TGG 0.449235 6:+35918627 None:intergenic
TCTCCGCCTACATCTTGTTC+CGG 0.452906 6:+35918658 None:intergenic
TACATCTTGTTCCGGTTCCC+GGG 0.456604 6:+35918666 None:intergenic
ATTGCTTATCAGTTTGGTGC+TGG 0.457396 6:-35921894 MsG0680032194.01.T01:CDS
ACAGGATCAATGTTTACAAT+CGG 0.457989 6:-35918804 MsG0680032194.01.T01:CDS
CCGGATCACGTGCCGAAGTA+AGG 0.458848 6:+35920111 None:intergenic
CAGGATCAATGTTTACAATC+GGG 0.469007 6:-35918803 MsG0680032194.01.T01:CDS
CCTTCAGTTCCCTCGAACAA+AGG 0.478663 6:-35919997 MsG0680032194.01.T01:CDS
ACCATTACTTCCTTTGTTCG+AGG 0.482164 6:+35919987 None:intergenic
GATCATCATTGCCCTTGGGT+TGG 0.488027 6:-35919861 MsG0680032194.01.T01:CDS
ATGCAGAAATTCCTATTTGG+AGG 0.488393 6:-35921947 MsG0680032194.01.T01:CDS
AAGAAATCGATGAAGACATA+AGG 0.494412 6:-35918561 MsG0680032194.01.T01:CDS
GACAAGACAAATTACCGATT+GGG 0.497831 6:+35923779 None:intergenic
CAGAAGAAAGGCACTCAAGT+TGG 0.497950 6:-35918453 MsG0680032194.01.T01:CDS
ATAAGCAATGACTTAGCATC+AGG 0.501978 6:+35921908 None:intergenic
GTTGGAGAAGAAGTGGAAGC+TGG 0.503264 6:-35918435 MsG0680032194.01.T01:CDS
TGTGTTTATGTGCTCTAGTG+TGG 0.504081 6:-35923639 MsG0680032194.01.T01:CDS
GTTCGAGGGAACTGAAGGCT+TGG 0.508442 6:+35920002 None:intergenic
CATTATACCATCTACCCAAT+CGG 0.510428 6:-35923793 MsG0680032194.01.T01:intron
CCCTCGAACAAAGGAAGTAA+TGG 0.513322 6:-35919988 MsG0680032194.01.T01:CDS
GTGTTTATGTGCTCTAGTGT+GGG 0.515363 6:-35923638 MsG0680032194.01.T01:CDS
GTGATCCGGGGATTATTCCT+AGG 0.519513 6:-35920097 MsG0680032194.01.T01:CDS
GTGGTAACTACCCGAGGAGG+TGG 0.521290 6:+35918688 None:intergenic
CAACAGTTCAACCAGAAGAA+AGG 0.521335 6:-35918465 MsG0680032194.01.T01:CDS
CCATTACTTCCTTTGTTCGA+GGG 0.521670 6:+35919988 None:intergenic
CACTCAAGTTGGAGAAGAAG+TGG 0.521803 6:-35918442 MsG0680032194.01.T01:CDS
AGGTACAGAGGCCACCTCCT+CGG 0.525137 6:-35918699 MsG0680032194.01.T01:CDS
CCTTTGTTCGAGGGAACTGA+AGG 0.526335 6:+35919997 None:intergenic
TAGAAACGGACGAGTCATAA+CGG 0.528734 6:+35920048 None:intergenic
TCGTCCGTTTCTATTGACAT+TGG 0.530086 6:-35920038 MsG0680032194.01.T01:CDS
GTCCGTTTCTATTGACATTG+GGG 0.534066 6:-35920036 MsG0680032194.01.T01:CDS
TCAGGCGGATGTAAATTCCT+AGG 0.534198 6:+35920080 None:intergenic
ATAAGGAGCAGAGGTAGCAA+TGG 0.546358 6:-35918544 MsG0680032194.01.T01:CDS
GATACTTCTCTTCCTTACTT+CGG 0.548948 6:-35920123 MsG0680032194.01.T01:CDS
TCATAACGGAACTCTTCCTC+AGG 0.549857 6:+35920062 None:intergenic
AGAAATTCCTATTTGGAGGA+AGG 0.550066 6:-35921943 MsG0680032194.01.T01:CDS
ACAAAGGAAGTAATGGTCAA+TGG 0.552312 6:-35919981 MsG0680032194.01.T01:CDS
GAATTGAATTGAATTGATTG+AGG 0.557774 6:-35918219 MsG0680032194.01.T01:three_prime_UTR
ACCATACCAGTCCAATGCAT+TGG 0.559731 6:+35919838 None:intergenic
CTCCTCGGGTAGTTACCACC+CGG 0.559980 6:-35918684 MsG0680032194.01.T01:CDS
GGTTGGCCAATGCATTGGAC+TGG 0.569149 6:-35919844 MsG0680032194.01.T01:intron
CCATTAGTATGACAGATGCA+GGG 0.581307 6:+35919552 None:intergenic
TTGGAGAAGAAGTGGAAGCT+GGG 0.581901 6:-35918434 MsG0680032194.01.T01:CDS
GAATCATGGGACAGTGTGGA+AGG 0.586507 6:-35919588 MsG0680032194.01.T01:CDS
TTTCTGCGCGTCAATGATCG+CGG 0.587300 6:-35918357 MsG0680032194.01.T01:exon
CGGGAACCGGAACAAGATGT+AGG 0.590133 6:-35918664 MsG0680032194.01.T01:CDS
CCAATGCATTGGCCAACCCA+AGG 0.591299 6:+35919849 None:intergenic
TCCCGGGTGGTAACTACCCG+AGG 0.594055 6:+35918682 None:intergenic
TCCGTTTCTATTGACATTGG+GGG 0.594328 6:-35920035 MsG0680032194.01.T01:CDS
GTACCTTATTGGCACAAACC+AGG 0.598771 6:-35919477 MsG0680032194.01.T01:intron
AGGATCAATGTTTACAATCG+GGG 0.600571 6:-35918802 MsG0680032194.01.T01:CDS
AAACAAACATAAAGAAGTAA+CGG 0.600646 6:+35919681 None:intergenic
TATCAACTTTAGGTGATATG+GGG 0.601199 6:-35918312 MsG0680032194.01.T01:three_prime_UTR
TTACTTCGGCACGTGATCCG+GGG 0.609507 6:-35920109 MsG0680032194.01.T01:CDS
GATGAAGACATAAGGAGCAG+AGG 0.610673 6:-35918553 MsG0680032194.01.T01:CDS
AGGCGGAGATCCTCGTTCCA+AGG 0.613496 6:-35918644 MsG0680032194.01.T01:CDS
AGGAGGGCGATACAGCATAC+AGG 0.614742 6:+35919929 None:intergenic
AGCAATGTGAGCAACGAGGA+GGG 0.616911 6:+35919913 None:intergenic
TAGTTCAAGAGGAGGTACAG+AGG 0.620300 6:-35918711 MsG0680032194.01.T01:CDS
TCGGGCTTTAGTTCAAGAGG+AGG 0.620300 6:-35918719 MsG0680032194.01.T01:CDS
CCTTACAACAATGCATCTGA+AGG 0.623908 6:-35918520 MsG0680032194.01.T01:CDS
CAATGCATTGGCCAACCCAA+GGG 0.627990 6:+35919850 None:intergenic
ATCTTGTTCCGGTTCCCGGG+TGG 0.628487 6:+35918669 None:intergenic
TAGGAATTTACATCCGCCTG+AGG 0.634847 6:-35920078 MsG0680032194.01.T01:CDS
CATTAGTATGACAGATGCAG+GGG 0.640103 6:+35919553 None:intergenic
GAGCAATGTGAGCAACGAGG+AGG 0.648927 6:+35919912 None:intergenic
TAACGGAACTCTTCCTCAGG+CGG 0.652862 6:+35920065 None:intergenic
AATACTTCACTCTTACAGGA+AGG 0.661663 6:+35919958 None:intergenic
GTTGAAGATGATCTAGACAT+CGG 0.663613 6:-35918622 MsG0680032194.01.T01:CDS
GGATCAATGTTTACAATCGG+GGG 0.674893 6:-35918801 MsG0680032194.01.T01:CDS
TCATCTTCAACCTTGGAACG+AGG 0.675248 6:+35918634 None:intergenic
TCCTCGGGTAGTTACCACCC+GGG 0.683308 6:-35918683 MsG0680032194.01.T01:CDS
TATTAAAGATATCACAGCGG+CGG 0.684396 6:-35918591 MsG0680032194.01.T01:CDS
AAATTCCTAGGAATAATCCC+CGG 0.693755 6:+35920092 None:intergenic
ATGAGAATCATGGGACAGTG+TGG 0.702879 6:-35919592 MsG0680032194.01.T01:CDS
CGGGTGGTAACTACCCGAGG+AGG 0.705380 6:+35918685 None:intergenic
GAACCGGAACAAGATGTAGG+CGG 0.717701 6:-35918661 MsG0680032194.01.T01:CDS
ATGGAGCAATGTGAGCAACG+AGG 0.763962 6:+35919909 None:intergenic
ACCTATTAAAGATATCACAG+CGG 0.778844 6:-35918594 MsG0680032194.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAATATTTATATATTTT+TGG - Chr6:35922277-35922296 MsG0680032194.01.T01:intron 0.0%
!!! TTTTATATATAACAGATAAT+TGG + Chr6:35920006-35920025 None:intergenic 10.0%
!! AAAATACTTCAAATTAACTA+AGG + Chr6:35919042-35919061 None:intergenic 15.0%
!! ATATATCAAAAAGATTGAAT+AGG - Chr6:35923725-35923744 MsG0680032194.01.T01:intron 15.0%
!! CAAAATATTAAGTATAAACA+CGG + Chr6:35918514-35918533 None:intergenic 15.0%
!! TTACTAACCTTAATAAAATA+AGG + Chr6:35919720-35919739 None:intergenic 15.0%
!! TTCTGTTTACAATAATAATT+AGG + Chr6:35919798-35919817 None:intergenic 15.0%
!!! AAGTATTTTCTTGTTTTATT+CGG - Chr6:35919053-35919072 MsG0680032194.01.T01:intron 15.0%
!!! ACTTAATATTTTGTAATGAT+GGG - Chr6:35918521-35918540 MsG0680032194.01.T01:CDS 15.0%
!!! ATTTGAGATAAACATTATAT+TGG + Chr6:35922582-35922601 None:intergenic 15.0%
!!! TACTTAATATTTTGTAATGA+TGG - Chr6:35918520-35918539 MsG0680032194.01.T01:CDS 15.0%
!!! TAGTAAATCTATTGTTTTAT+TGG - Chr6:35919734-35919753 MsG0680032194.01.T01:intron 15.0%
!!! TTTGTTACCTTATTTTATTA+AGG - Chr6:35919710-35919729 MsG0680032194.01.T01:intron 15.0%
!! AAACAAACATAAAGAAGTAA+CGG + Chr6:35922327-35922346 None:intergenic 20.0%
!! AAAGAATTAATAAAACAAGC+TGG + Chr6:35921244-35921263 None:intergenic 20.0%
!! AATGTCTATTAAAAGATCAT+TGG + Chr6:35921481-35921500 None:intergenic 20.0%
!! AGAAATTCACTGAAATATAT+TGG + Chr6:35922609-35922628 None:intergenic 20.0%
!! ATGTCTATTAAAAGATCATT+GGG + Chr6:35921480-35921499 None:intergenic 20.0%
!! CTATTTAACATTACATTACT+AGG + Chr6:35919509-35919528 None:intergenic 20.0%
!! GATTATAAATTCATGAACAT+GGG - Chr6:35921553-35921572 MsG0680032194.01.T01:intron 20.0%
!! TATTAACATTATATGTGCAT+CGG - Chr6:35921121-35921140 MsG0680032194.01.T01:intron 20.0%
!! TCATAAAATCAATAACAATG+TGG + Chr6:35922202-35922221 None:intergenic 20.0%
!! TGATTATAAATTCATGAACA+TGG - Chr6:35921552-35921571 MsG0680032194.01.T01:intron 20.0%
!! TTTATTGTGATGCTTATTAT+TGG + Chr6:35921399-35921418 None:intergenic 20.0%
!! TTTGAATGTGGTAAAAAATT+AGG - Chr6:35922789-35922808 MsG0680032194.01.T01:intron 20.0%
!!! AACGAGAAGAAAATTTTATT+TGG - Chr6:35921322-35921341 MsG0680032194.01.T01:intron 20.0%
!!! AATCTATTGTTTTATTGGTT+TGG - Chr6:35919739-35919758 MsG0680032194.01.T01:intron 20.0%
!!! ACTTTTATACAATGTTGAAA+GGG - Chr6:35920894-35920913 MsG0680032194.01.T01:intron 20.0%
!!! ATCTATTGTTTTATTGGTTT+GGG - Chr6:35919740-35919759 MsG0680032194.01.T01:intron 20.0%
!!! CATGTCTTTTCTATAAAATT+TGG + Chr6:35923025-35923044 None:intergenic 20.0%
!!! GAAGTTTAATTTCAGAATTT+AGG - Chr6:35918613-35918632 MsG0680032194.01.T01:CDS 20.0%
!!! TTTATTTGGTGAAAAACTTT+TGG - Chr6:35921336-35921355 MsG0680032194.01.T01:intron 20.0%
! AAATTTACAGAAAACCAAAC+CGG + Chr6:35923078-35923097 None:intergenic 25.0%
! AAGAATGTAGGTTAAATGAA+AGG + Chr6:35921780-35921799 None:intergenic 25.0%
! AAGAGACTATTAGATTGATA+TGG + Chr6:35919857-35919876 None:intergenic 25.0%
! AATACACAAAAGATGATAAC+CGG + Chr6:35920145-35920164 None:intergenic 25.0%
! AATATCTTCAGAATATACTG+TGG - Chr6:35919616-35919635 MsG0680032194.01.T01:CDS 25.0%
! AATTAATACTATCTCTTGAG+TGG - Chr6:35918866-35918885 MsG0680032194.01.T01:intron 25.0%
! AGTTTCAGTTACATTTGAAT+TGG + Chr6:35923618-35923637 None:intergenic 25.0%
! ATAAGCATCACAATAAATAG+TGG - Chr6:35921402-35921421 MsG0680032194.01.T01:intron 25.0%
! ATATCAACTTTAGGTGATAT+GGG - Chr6:35923692-35923711 MsG0680032194.01.T01:intron 25.0%
! ATTGAAAACAGTTCTTATGA+TGG - Chr6:35922698-35922717 MsG0680032194.01.T01:intron 25.0%
! ATTTATTAGCGAACAGAAAA+AGG - Chr6:35921588-35921607 MsG0680032194.01.T01:intron 25.0%
! ATTTCATTCAAGACAAATCT+AGG + Chr6:35922925-35922944 None:intergenic 25.0%
! CACCTATAAACAAAAATTAC+GGG + Chr6:35921860-35921879 None:intergenic 25.0%
! CATACCTTATATGATATTAC+CGG - Chr6:35923056-35923075 MsG0680032194.01.T01:intron 25.0%
! CTGCATTATATGAAGAAAAA+TGG + Chr6:35920189-35920208 None:intergenic 25.0%
! CTTTCAACATTGTATAAAAG+TGG + Chr6:35920895-35920914 None:intergenic 25.0%
! CTTTGATCTTAAAAGAAGAA+TGG - Chr6:35921621-35921640 MsG0680032194.01.T01:intron 25.0%
! GAATTGAATTGAATTGATTG+AGG - Chr6:35923786-35923805 MsG0680032194.01.T01:intron 25.0%
! GAATTTATTCCCCTTATAAA+AGG + Chr6:35920731-35920750 None:intergenic 25.0%
! GCACCTATAAACAAAAATTA+CGG + Chr6:35921861-35921880 None:intergenic 25.0%
! TAAGTATAAACACGGAAAAA+GGG + Chr6:35918506-35918525 None:intergenic 25.0%
! TCACTGATAAAAATTGCAAA+GGG + Chr6:35919266-35919285 None:intergenic 25.0%
! TTAAGTATAAACACGGAAAA+AGG + Chr6:35918507-35918526 None:intergenic 25.0%
! TTATTGTAAACAGAATCATC+TGG - Chr6:35919803-35919822 MsG0680032194.01.T01:intron 25.0%
! TTCAATTCACATTCCTATAA+CGG + Chr6:35923774-35923793 None:intergenic 25.0%
! TTCATTTAACCTACATTCTT+AGG - Chr6:35921780-35921799 MsG0680032194.01.T01:CDS 25.0%
! TTCTCGTTGAAAGTTATATT+TGG + Chr6:35921310-35921329 None:intergenic 25.0%
!! ACAATAAATAGTGGAATAGT+AGG - Chr6:35921411-35921430 MsG0680032194.01.T01:intron 25.0%
!! ATAAGAACTGTTTTCAATAG+TGG + Chr6:35922696-35922715 None:intergenic 25.0%
!! ATAAGTTTTTGTTGAAGTCA+TGG + Chr6:35919911-35919930 None:intergenic 25.0%
!! ATTTGTATTGATACGATATC+TGG - Chr6:35918930-35918949 MsG0680032194.01.T01:intron 25.0%
!! CACTTTTATACAATGTTGAA+AGG - Chr6:35920893-35920912 MsG0680032194.01.T01:intron 25.0%
!! CATTTTTCTTCATATAATGC+AGG - Chr6:35920187-35920206 MsG0680032194.01.T01:intron 25.0%
!! CTTCTTTATGTTTGTTTCTT+CGG - Chr6:35922330-35922349 MsG0680032194.01.T01:intron 25.0%
!! GGTACTTAATCCTTTTATAA+GGG - Chr6:35920718-35920737 MsG0680032194.01.T01:intron 25.0%
!! GTACTTAATCCTTTTATAAG+GGG - Chr6:35920719-35920738 MsG0680032194.01.T01:intron 25.0%
!! TAATCAGATTTTACCGTTAT+AGG - Chr6:35923758-35923777 MsG0680032194.01.T01:intron 25.0%
!!! ATATTTTGTAATGATGGGTT+TGG - Chr6:35918526-35918545 MsG0680032194.01.T01:CDS 25.0%
!!! ATCCCGTAATTTTTGTTTAT+AGG - Chr6:35921855-35921874 MsG0680032194.01.T01:CDS 25.0%
!!! ATTCGGTTATTTTGCATTTT+TGG - Chr6:35919070-35919089 MsG0680032194.01.T01:intron 25.0%
!!! TCATTTTGTTTTTCCTGTTT+TGG - Chr6:35919399-35919418 MsG0680032194.01.T01:intron 25.0%
!!! TTACTCAATGTTTTTGAATG+TGG - Chr6:35922777-35922796 MsG0680032194.01.T01:intron 25.0%
!!! TTTTCTAATTTGCGAAAGTA+AGG - Chr6:35921727-35921746 MsG0680032194.01.T01:intron 25.0%
!!! TTTTTACATCAAGGTTTTGA+TGG - Chr6:35922390-35922409 MsG0680032194.01.T01:intron 25.0%
AAAAACAAAATGAGCTGAAC+TGG + Chr6:35919392-35919411 None:intergenic 30.0%
AAACACTCTCAATAACTCAT+AGG - Chr6:35920457-35920476 MsG0680032194.01.T01:intron 30.0%
AAGAAATCGATGAAGACATA+AGG - Chr6:35923444-35923463 MsG0680032194.01.T01:intron 30.0%
AATCAAATTGTTCCCTTCAT+TGG + Chr6:35921537-35921556 None:intergenic 30.0%
AATCTAGGTACAAACGAATT+AGG + Chr6:35922990-35923009 None:intergenic 30.0%
AATGTTGAAAGGGAGAATAA+AGG - Chr6:35920904-35920923 MsG0680032194.01.T01:intron 30.0%
AATTAGGCTTACACTATCTT+TGG + Chr6:35922974-35922993 None:intergenic 30.0%
AATTCTACAGCAGAAAAACA+TGG - Chr6:35920848-35920867 MsG0680032194.01.T01:intron 30.0%
AATTCTTGACTATGACCATA+AGG - Chr6:35920746-35920765 MsG0680032194.01.T01:intron 30.0%
AATTTGCGAAAGTAAGGATT+TGG - Chr6:35921733-35921752 MsG0680032194.01.T01:intron 30.0%
ACAGGATCAATGTTTACAAT+CGG - Chr6:35923201-35923220 MsG0680032194.01.T01:intron 30.0%
ACATTACTAGGAGAGAATTT+AGG + Chr6:35919497-35919516 None:intergenic 30.0%
ACCTATTAAAGATATCACAG+CGG - Chr6:35923411-35923430 MsG0680032194.01.T01:intron 30.0%
AGAACTGTGAAAGAAATTCA+CGG + Chr6:35922555-35922574 None:intergenic 30.0%
AGACCTTCAGAGTATATAAA+AGG + Chr6:35919165-35919184 None:intergenic 30.0%
AGCTAAAACTATTAAGGTCT+TGG - Chr6:35920412-35920431 MsG0680032194.01.T01:intron 30.0%
ATGGACAAAATCATGATGTA+AGG - Chr6:35922742-35922761 MsG0680032194.01.T01:intron 30.0%
ATTGTACTTGCATAATTAGC+GGG - Chr6:35922639-35922658 MsG0680032194.01.T01:intron 30.0%
ATTTACTTGTGATCCAATGA+AGG - Chr6:35921521-35921540 MsG0680032194.01.T01:intron 30.0%
CAAACCGGTAATATCATATA+AGG + Chr6:35923063-35923082 None:intergenic 30.0%
CATATCAACTTTAGGTGATA+TGG - Chr6:35923691-35923710 MsG0680032194.01.T01:intron 30.0%
CATTATTAAACCTGATTCAG+TGG - Chr6:35920617-35920636 MsG0680032194.01.T01:intron 30.0%
CATTGTACTTGCATAATTAG+CGG - Chr6:35922638-35922657 MsG0680032194.01.T01:intron 30.0%
CCTAAACAAATGATGCTTTA+TGG - Chr6:35922893-35922912 MsG0680032194.01.T01:intron 30.0%
CGATGAAACAAAATATTGAG+AGG + Chr6:35921278-35921297 None:intergenic 30.0%
CTCACTGATAAAAATTGCAA+AGG + Chr6:35919267-35919286 None:intergenic 30.0%
CTCTCAAGCTAAAACTATTA+AGG - Chr6:35920406-35920425 MsG0680032194.01.T01:intron 30.0%
CTTATGCAGAAATTCCTATT+TGG - Chr6:35920055-35920074 MsG0680032194.01.T01:CDS 30.0%
GCATCATTTGTTTAGGTAAA+AGG + Chr6:35922889-35922908 None:intergenic 30.0%
GCTAAAACTATTAAGGTCTT+GGG - Chr6:35920413-35920432 MsG0680032194.01.T01:intron 30.0%
GGAAATCATATAACCAAAAC+AGG + Chr6:35921759-35921778 None:intergenic 30.0%
GGATTTAAGAAAGAGTAACT+TGG + Chr6:35921459-35921478 None:intergenic 30.0%
GGCAGCAATATCTATATATA+TGG + Chr6:35920650-35920669 None:intergenic 30.0%
GTCAAAAGCAGCAAAATATA+AGG - Chr6:35920504-35920523 MsG0680032194.01.T01:intron 30.0%
GTGAAGTGAAATTATGCATT+TGG - Chr6:35918684-35918703 MsG0680032194.01.T01:CDS 30.0%
TAAGTCATTGCTTATCAGTT+TGG - Chr6:35920105-35920124 MsG0680032194.01.T01:CDS 30.0%
TATAGATATTGCTGCCTAAA+AGG - Chr6:35920654-35920673 MsG0680032194.01.T01:intron 30.0%
TATCAACTTTAGGTGATATG+GGG - Chr6:35923693-35923712 MsG0680032194.01.T01:intron 30.0%
TCAAGACTCAATCAGTTTAT+AGG + Chr6:35918796-35918815 None:intergenic 30.0%
TCTGTTATTCTTGTCTAGTT+AGG - Chr6:35918407-35918426 MsG0680032194.01.T01:CDS 30.0%
TGATATGGTTTATCACTAGA+TGG + Chr6:35919842-35919861 None:intergenic 30.0%
TTCAACACAATTGTTGCAAA+TGG + Chr6:35922118-35922137 None:intergenic 30.0%
TTGTGTAGCATATCAACTTT+AGG - Chr6:35923683-35923702 MsG0680032194.01.T01:intron 30.0%
TTTACTTGTGATCCAATGAA+GGG - Chr6:35921522-35921541 MsG0680032194.01.T01:intron 30.0%
TTTCTTTCATAATGATGTGC+TGG - Chr6:35922228-35922247 MsG0680032194.01.T01:intron 30.0%
! AATCTCAGCTTTTTACATCA+AGG - Chr6:35922381-35922400 MsG0680032194.01.T01:intron 30.0%
! ACAAGCAGCCTAATATTTTA+AGG - Chr6:35919193-35919212 MsG0680032194.01.T01:intron 30.0%
! ACCTTATAGAATAGCTGTTT+TGG - Chr6:35919099-35919118 MsG0680032194.01.T01:intron 30.0%
! ATGAAAAAGAGTACAACAAG+TGG + Chr6:35919448-35919467 None:intergenic 30.0%
! CCATAAAGCATCATTTGTTT+AGG + Chr6:35922896-35922915 None:intergenic 30.0%
! CTTATATGATATTACCGGTT+TGG - Chr6:35923061-35923080 MsG0680032194.01.T01:intron 30.0%
! GGGTACTTAATCCTTTTATA+AGG - Chr6:35920717-35920736 MsG0680032194.01.T01:intron 30.0%
! TCTGTATCGAAAGTTTTCAT+AGG + Chr6:35923174-35923193 None:intergenic 30.0%
! TGACTTTTATATGGCCTATT+TGG + Chr6:35920488-35920507 None:intergenic 30.0%
! TGAGTTTTTCCTAAGAATGT+AGG + Chr6:35921792-35921811 None:intergenic 30.0%
! TGTCCTTTTATATACTCTGA+AGG - Chr6:35919159-35919178 MsG0680032194.01.T01:intron 30.0%
! TTTTTCTGCTGTAGAATTTC+TGG + Chr6:35920846-35920865 None:intergenic 30.0%
!! CCTTATAGAATAGCTGTTTT+GGG - Chr6:35919100-35919119 MsG0680032194.01.T01:intron 30.0%
!! GAAGAGTATCTTTATCATCT+TGG - Chr6:35923123-35923142 MsG0680032194.01.T01:intron 30.0%
!! GGGGTGTTTAAATAATTTTC+TGG - Chr6:35923223-35923242 MsG0680032194.01.T01:intron 30.0%
!! TAATGCAGGATATGCTATTT+TGG - Chr6:35920201-35920220 MsG0680032194.01.T01:intron 30.0%
!! TACTAACATTTAGCTTGAGA+GGG + Chr6:35920352-35920371 None:intergenic 30.0%
!! TATGAGTTATTGAGAGTGTT+TGG + Chr6:35920458-35920477 None:intergenic 30.0%
!! TTACTAACATTTAGCTTGAG+AGG + Chr6:35920353-35920372 None:intergenic 30.0%
!! TTTTGATGGATGAGAATCAT+GGG - Chr6:35922404-35922423 MsG0680032194.01.T01:intron 30.0%
!!! CTTAATAGTTTTAGCTTGAG+AGG + Chr6:35920408-35920427 None:intergenic 30.0%
!!! TGCTGCTTTTGACTTTTATA+TGG + Chr6:35920497-35920516 None:intergenic 30.0%
!!! TTTTCCTGTTTTGGTAAAGA+GGG - Chr6:35919408-35919427 MsG0680032194.01.T01:intron 30.0%
!!! TTTTTCCTGTTTTGGTAAAG+AGG - Chr6:35919407-35919426 MsG0680032194.01.T01:intron 30.0%
AAATCCACTAGAAACCTACA+TGG + Chr6:35919230-35919249 None:intergenic 35.0%
AAATTCCTAGGAATAATCCC+CGG + Chr6:35921916-35921935 None:intergenic 35.0%
AAGACAATGGTTACAGATGA+TGG + Chr6:35918745-35918764 None:intergenic 35.0%
AAGTTCAAAGTTGAGTGATG+TGG - Chr6:35918576-35918595 MsG0680032194.01.T01:CDS 35.0%
AATACTTCACTCTTACAGGA+AGG + Chr6:35922050-35922069 None:intergenic 35.0%
ACAAAGGAAGTAATGGTCAA+TGG - Chr6:35922024-35922043 MsG0680032194.01.T01:CDS 35.0%
ACAACAAGTGGTTGTTGATA+AGG + Chr6:35919436-35919455 None:intergenic 35.0%
ACAGCAGAAAAACATGGATT+TGG - Chr6:35920854-35920873 MsG0680032194.01.T01:intron 35.0%
ACAGTTAAGACACTAGTCAA+AGG - Chr6:35920816-35920835 MsG0680032194.01.T01:intron 35.0%
ACTCATAGGAATGTCCAAAT+AGG - Chr6:35920471-35920490 MsG0680032194.01.T01:intron 35.0%
AGAAATTCCTATTTGGAGGA+AGG - Chr6:35920062-35920081 MsG0680032194.01.T01:CDS 35.0%
AGACAAGACAAATTACCGAT+TGG + Chr6:35918230-35918249 None:intergenic 35.0%
AGGATCAATGTTTACAATCG+GGG - Chr6:35923203-35923222 MsG0680032194.01.T01:intron 35.0%
AGGCAAAGTTACATAAGTCA+GGG - Chr6:35920697-35920716 MsG0680032194.01.T01:intron 35.0%
AGTTCAAAGTTGAGTGATGT+GGG - Chr6:35918577-35918596 MsG0680032194.01.T01:CDS 35.0%
ATAAGCAATGACTTAGCATC+AGG + Chr6:35920100-35920119 None:intergenic 35.0%
ATATAAGCCTTCCTCCAAAT+AGG + Chr6:35920072-35920091 None:intergenic 35.0%
ATGCAGAAATTCCTATTTGG+AGG - Chr6:35920058-35920077 MsG0680032194.01.T01:CDS 35.0%
ATTAAACCTGATTCAGTGGT+GGG - Chr6:35920621-35920640 MsG0680032194.01.T01:intron 35.0%
CAGGATCAATGTTTACAATC+GGG - Chr6:35923202-35923221 MsG0680032194.01.T01:intron 35.0%
CATACTGTTTCATCTCTTTG+TGG - Chr6:35922476-35922495 MsG0680032194.01.T01:intron 35.0%
CATTATACCATCTACCCAAT+CGG - Chr6:35918212-35918231 MsG0680032194.01.T01:three_prime_UTR 35.0%
CCCAAAACAGCTATTCTATA+AGG + Chr6:35919103-35919122 None:intergenic 35.0%
CCTGAGGATAATCAATCTTA+AGG + Chr6:35919133-35919152 None:intergenic 35.0%
CCTTAAGATTGATTATCCTC+AGG - Chr6:35919130-35919149 MsG0680032194.01.T01:intron 35.0%
GATACTTCTCTTCCTTACTT+CGG - Chr6:35921882-35921901 MsG0680032194.01.T01:CDS 35.0%
GCACACTGCCTTAAAATATT+AGG + Chr6:35919204-35919223 None:intergenic 35.0%
GGCTTTCATTTGTACCTTAT+TGG - Chr6:35922517-35922536 MsG0680032194.01.T01:intron 35.0%
GTAACCATTGTCTTATCCAT+TGG - Chr6:35918751-35918770 MsG0680032194.01.T01:CDS 35.0%
GTTGAAGATGATCTAGACAT+CGG - Chr6:35923383-35923402 MsG0680032194.01.T01:intron 35.0%
TAAACTGATTGAGTCTTGAG+CGG - Chr6:35918797-35918816 MsG0680032194.01.T01:CDS 35.0%
TAGGCAAAGTTACATAAGTC+AGG - Chr6:35920696-35920715 MsG0680032194.01.T01:intron 35.0%
TATGTAACTTTGCCTACATG+AGG + Chr6:35920692-35920711 None:intergenic 35.0%
TATTAAACCTGATTCAGTGG+TGG - Chr6:35920620-35920639 MsG0680032194.01.T01:intron 35.0%
TATTAAAGATATCACAGCGG+CGG - Chr6:35923414-35923433 MsG0680032194.01.T01:intron 35.0%
TCACAATACTTCACTCTTAC+AGG + Chr6:35922054-35922073 None:intergenic 35.0%
TGGTCATTCAAGACAAATCT+AGG + Chr6:35923005-35923024 None:intergenic 35.0%
TTGGAGGAAGGCTTATATTT+GGG - Chr6:35920074-35920093 MsG0680032194.01.T01:CDS 35.0%
TTTGAATTGGCAAGTACATC+TGG + Chr6:35923605-35923624 None:intergenic 35.0%
TTTGGAGGAAGGCTTATATT+TGG - Chr6:35920073-35920092 MsG0680032194.01.T01:CDS 35.0%
! AAAAGCACAGTAGATATTCC+AGG + Chr6:35919584-35919603 None:intergenic 35.0%
! AGCCTTCAAGGAACAATTTT+CGG - Chr6:35923267-35923286 MsG0680032194.01.T01:intron 35.0%
! ATCAGTGAGTATTGTGTTCA+GGG - Chr6:35919278-35919297 MsG0680032194.01.T01:intron 35.0%
! GAAAAACATGGATTTGGTCA+TGG - Chr6:35920860-35920879 MsG0680032194.01.T01:intron 35.0%
! GACAAGACAAATTACCGATT+GGG + Chr6:35918229-35918248 None:intergenic 35.0%
! GTATCGAAAGTTTTCATAGG+TGG + Chr6:35923171-35923190 None:intergenic 35.0%
! TATCAGTGAGTATTGTGTTC+AGG - Chr6:35919277-35919296 MsG0680032194.01.T01:intron 35.0%
! TCTTATTTCCCTGTAAGACA+CGG + Chr6:35918463-35918482 None:intergenic 35.0%
! TCTTTTGTGTATTCGTAGCA+AGG - Chr6:35920152-35920171 MsG0680032194.01.T01:intron 35.0%
! TTCATCTCTTTGTGGTTTGT+TGG - Chr6:35922484-35922503 MsG0680032194.01.T01:intron 35.0%
! TTTTGATCATCATTGCCCTT+GGG - Chr6:35922140-35922159 MsG0680032194.01.T01:intron 35.0%
!! AGTTATTGAGAGTGTTTGGA+AGG + Chr6:35920454-35920473 None:intergenic 35.0%
!! ATATGTTGATTTCTGAGAGC+TGG - Chr6:35921816-35921835 MsG0680032194.01.T01:CDS 35.0%
!! GTTATTGAGAGTGTTTGGAA+GGG + Chr6:35920453-35920472 None:intergenic 35.0%
!! GTTTTGATGGATGAGAATCA+TGG - Chr6:35922403-35922422 MsG0680032194.01.T01:intron 35.0%
!! TGGTTTTCTAGTGTTGTTCT+AGG - Chr6:35918976-35918995 MsG0680032194.01.T01:intron 35.0%
!! TTGAAGCTCTAGGCTAATAA+TGG - Chr6:35918430-35918449 MsG0680032194.01.T01:CDS 35.0%
AACACTAGAAAACCAGCTGA+GGG + Chr6:35918971-35918990 None:intergenic 40.0%
ACCATTACTTCCTTTGTTCG+AGG + Chr6:35922021-35922040 None:intergenic 40.0%
AGAAAGAACCATGTCGTTAC+AGG + Chr6:35919949-35919968 None:intergenic 40.0%
AGTAGTATTCCACACACCAA+TGG + Chr6:35918770-35918789 None:intergenic 40.0%
ATCTGAAGGTGATTCAGTTC+TGG - Chr6:35923499-35923518 MsG0680032194.01.T01:intron 40.0%
CAACAGTTCAACCAGAAGAA+AGG - Chr6:35923540-35923559 MsG0680032194.01.T01:intron 40.0%
CACACCAATGGATAAGACAA+TGG + Chr6:35918758-35918777 None:intergenic 40.0%
CAGAATATCGACAGATATCC+TGG - Chr6:35919563-35919582 MsG0680032194.01.T01:CDS 40.0%
CATTAGTATGACAGATGCAG+GGG + Chr6:35922455-35922474 None:intergenic 40.0%
CCATTACTTCCTTTGTTCGA+GGG + Chr6:35922020-35922039 None:intergenic 40.0%
CCATTAGTATGACAGATGCA+GGG + Chr6:35922456-35922475 None:intergenic 40.0%
CCTTACAACAATGCATCTGA+AGG - Chr6:35923485-35923504 MsG0680032194.01.T01:intron 40.0%
CCTTCAGATGCATTGTTGTA+AGG + Chr6:35923488-35923507 None:intergenic 40.0%
CGTCCGTTTCTATTGACATT+GGG - Chr6:35921968-35921987 MsG0680032194.01.T01:CDS 40.0%
CTAATTATTGAGCCAGTGCT+TGG + Chr6:35921022-35921041 None:intergenic 40.0%
CTAGTAGTGTATTGCATCAC+AGG + Chr6:35919009-35919028 None:intergenic 40.0%
GAGTGGTTGTTTGTAAGAGT+TGG - Chr6:35918883-35918902 MsG0680032194.01.T01:intron 40.0%
GATATTGCTGCCTAAAAGGT+TGG - Chr6:35920658-35920677 MsG0680032194.01.T01:intron 40.0%
GCCGCTGTGATATCTTTAAT+AGG + Chr6:35923415-35923434 None:intergenic 40.0%
GGATCAATGTTTACAATCGG+GGG - Chr6:35923204-35923223 MsG0680032194.01.T01:intron 40.0%
GTACAAAAGTGAAGCCTTCA+AGG - Chr6:35923255-35923274 MsG0680032194.01.T01:intron 40.0%
GTATTGTGTTCAGGGTTTCT+CGG - Chr6:35919286-35919305 MsG0680032194.01.T01:intron 40.0%
GTCCGTTTCTATTGACATTG+GGG - Chr6:35921969-35921988 MsG0680032194.01.T01:CDS 40.0%
GTCTAGATCATCTTCAACCT+TGG + Chr6:35923381-35923400 None:intergenic 40.0%
GTGTTTATGTGCTCTAGTGT+GGG - Chr6:35918367-35918386 MsG0680032194.01.T01:CDS 40.0%
GTTATCTTCCTGTAACGACA+TGG - Chr6:35919938-35919957 MsG0680032194.01.T01:CDS 40.0%
TAAAAGGACAATTTCGCCTG+AGG + Chr6:35919149-35919168 None:intergenic 40.0%
TAGAAACGGACGAGTCATAA+CGG + Chr6:35921960-35921979 None:intergenic 40.0%
TAGAGAATGCTGTGTTGAGT+TGG - Chr6:35918291-35918310 MsG0680032194.01.T01:three_prime_UTR 40.0%
TATTCTCAACTACCAAGCAC+TGG - Chr6:35921007-35921026 MsG0680032194.01.T01:intron 40.0%
TCCCCCAATGTCAATAGAAA+CGG + Chr6:35921974-35921993 None:intergenic 40.0%
TCCGTTTCTATTGACATTGG+GGG - Chr6:35921970-35921989 MsG0680032194.01.T01:CDS 40.0%
TCGTCCGTTTCTATTGACAT+TGG - Chr6:35921967-35921986 MsG0680032194.01.T01:CDS 40.0%
TCTGAAGGTGATTCAGTTCT+GGG - Chr6:35923500-35923519 MsG0680032194.01.T01:intron 40.0%
TGTGTTTATGTGCTCTAGTG+TGG - Chr6:35918366-35918385 MsG0680032194.01.T01:CDS 40.0%
TTCGATACAGAGCAGATAAC+AGG - Chr6:35923183-35923202 MsG0680032194.01.T01:intron 40.0%
TTGTCTTATCCATTGGTGTG+TGG - Chr6:35918758-35918777 MsG0680032194.01.T01:CDS 40.0%
! AGTAAGGATTTGGCCTGTTT+TGG - Chr6:35921743-35921762 MsG0680032194.01.T01:intron 40.0%
! ATGATGGAAAGACAGTAGTG+AGG - Chr6:35922714-35922733 MsG0680032194.01.T01:intron 40.0%
! CAAATTACCGATTGGGTAGA+TGG + Chr6:35918222-35918241 None:intergenic 40.0%
! CATTCCATGTAGGTTTCTAG+TGG - Chr6:35919223-35919242 MsG0680032194.01.T01:intron 40.0%
! CTTTCTTCTGGTTGAACTGT+TGG + Chr6:35923542-35923561 None:intergenic 40.0%
! GCCTTCAAGGAACAATTTTC+GGG - Chr6:35923268-35923287 MsG0680032194.01.T01:intron 40.0%
! GGTTGTTTGTAAGAGTTGGT+TGG - Chr6:35918887-35918906 MsG0680032194.01.T01:intron 40.0%
! TATTCGTAGCAAGGCATCTT+CGG - Chr6:35920161-35920180 MsG0680032194.01.T01:intron 40.0%
! TCTGTGTGTGTATGCTGATT+CGG - Chr6:35918662-35918681 MsG0680032194.01.T01:CDS 40.0%
!! ATCTCTTTGTGGTTTGTTGG+TGG - Chr6:35922487-35922506 MsG0680032194.01.T01:intron 40.0%
!! ATTGCTTATCAGTTTGGTGC+TGG - Chr6:35920111-35920130 MsG0680032194.01.T01:CDS 40.0%
!! GTTTTGATCATCATTGCCCT+TGG - Chr6:35922139-35922158 MsG0680032194.01.T01:intron 40.0%
!! TCTAGTTAGGTTGAAGCTCT+AGG - Chr6:35918420-35918439 MsG0680032194.01.T01:CDS 40.0%
!! TTTTCGGGCTTTAGTTCAAG+AGG - Chr6:35923283-35923302 MsG0680032194.01.T01:intron 40.0%
!!! AGGATATGCTATTTTGGTGG+TGG - Chr6:35920207-35920226 MsG0680032194.01.T01:intron 40.0%
!!! GAATAGCTGTTTTGGGTTGT+TGG - Chr6:35919107-35919126 MsG0680032194.01.T01:intron 40.0%
!!! TGCAGGATATGCTATTTTGG+TGG - Chr6:35920204-35920223 MsG0680032194.01.T01:intron 40.0%
ACCATACCAGTCCAATGCAT+TGG + Chr6:35922170-35922189 None:intergenic 45.0%
AGGAAAGTGAAGACAGCTAC+TGG - Chr6:35920785-35920804 MsG0680032194.01.T01:intron 45.0%
AGTCTTGAGCGGTTCTTTGT+AGG - Chr6:35918808-35918827 MsG0680032194.01.T01:CDS 45.0%
ATAAGGAGCAGAGGTAGCAA+TGG - Chr6:35923461-35923480 MsG0680032194.01.T01:intron 45.0%
ATGAGAATCATGGGACAGTG+TGG - Chr6:35922413-35922432 MsG0680032194.01.T01:intron 45.0%
ATGGAAAGACAGTAGTGAGG+TGG - Chr6:35922717-35922736 MsG0680032194.01.T01:intron 45.0%
ATTACTAGTGTTCCCTCAGC+TGG - Chr6:35918956-35918975 MsG0680032194.01.T01:intron 45.0%
CAACACTAGAAAACCAGCTG+AGG + Chr6:35918972-35918991 None:intergenic 45.0%
CAACTTGAGTGCCTTTCTTC+TGG + Chr6:35923554-35923573 None:intergenic 45.0%
CACAACTCCAAACGACTGTT+TGG + Chr6:35920588-35920607 None:intergenic 45.0%
CCCTCGAACAAAGGAAGTAA+TGG - Chr6:35922017-35922036 MsG0680032194.01.T01:CDS 45.0%
CCCTGCATCTGTCATACTAA+TGG - Chr6:35922453-35922472 MsG0680032194.01.T01:intron 45.0%
GATGAAGACATAAGGAGCAG+AGG - Chr6:35923452-35923471 MsG0680032194.01.T01:intron 45.0%
GCCATTAGTATGACAGATGC+AGG + Chr6:35922457-35922476 None:intergenic 45.0%
GCCCGAAAATTGTTCCTTGA+AGG + Chr6:35923272-35923291 None:intergenic 45.0%
GGAACCCTCTTTACCAAAAC+AGG + Chr6:35919415-35919434 None:intergenic 45.0%
GGTTCTTTGTAGGAGCTAGT+TGG - Chr6:35918818-35918837 MsG0680032194.01.T01:CDS 45.0%
GTACCTTATTGGCACAAACC+AGG - Chr6:35922528-35922547 MsG0680032194.01.T01:intron 45.0%
GTAGCTGTCTTCACTTTCCT+AGG + Chr6:35920785-35920804 None:intergenic 45.0%
GTCTTCACTTTCCTAGGCAT+CGG + Chr6:35920779-35920798 None:intergenic 45.0%
GTGAAAGAAATTCACGGACC+TGG + Chr6:35922549-35922568 None:intergenic 45.0%
TAGGAATTTACATCCGCCTG+AGG - Chr6:35921927-35921946 MsG0680032194.01.T01:CDS 45.0%
TCAGGCGGATGTAAATTCCT+AGG + Chr6:35921928-35921947 None:intergenic 45.0%
TCATCTTCAACCTTGGAACG+AGG + Chr6:35923374-35923393 None:intergenic 45.0%
TCCAAACGACTGTTTGGATG+TGG + Chr6:35920582-35920601 None:intergenic 45.0%
TCCACATCCAAACAGTCGTT+TGG - Chr6:35920578-35920597 MsG0680032194.01.T01:intron 45.0%
TTGGAGAAGAAGTGGAAGCT+GGG - Chr6:35923571-35923590 MsG0680032194.01.T01:intron 45.0%
TTGGTCACATGACCTCATGT+AGG - Chr6:35920677-35920696 MsG0680032194.01.T01:intron 45.0%
! CAAACAGTCGTTTGGAGTTG+TGG - Chr6:35920586-35920605 MsG0680032194.01.T01:intron 45.0%
! GGTCATGTGACCAACCTTTT+AGG + Chr6:35920671-35920690 None:intergenic 45.0%
! TAGTTCAAGAGGAGGTACAG+AGG - Chr6:35923294-35923313 MsG0680032194.01.T01:intron 45.0%
! TCATAACGGAACTCTTCCTC+AGG + Chr6:35921946-35921965 None:intergenic 45.0%
!! ACTTTCCTAGGCATCGGTTA+TGG + Chr6:35920773-35920792 None:intergenic 45.0%
!! AGAATGCTGTGTTGAGTTGG+TGG - Chr6:35918294-35918313 MsG0680032194.01.T01:three_prime_UTR 45.0%
!! CACTCAAGTTGGAGAAGAAG+TGG - Chr6:35923563-35923582 MsG0680032194.01.T01:intron 45.0%
!! CAGAAGAAAGGCACTCAAGT+TGG - Chr6:35923552-35923571 MsG0680032194.01.T01:intron 45.0%
!! TGGTTTGTTGGTGGACTAAC+TGG - Chr6:35922496-35922515 MsG0680032194.01.T01:intron 45.0%
!! TTGGTTTTCCCAATGTGCAG+AGG - Chr6:35922296-35922315 MsG0680032194.01.T01:intron 45.0%
!! TTTGGTGCTGGTCATAGTTC+CGG - Chr6:35920123-35920142 MsG0680032194.01.T01:CDS 45.0%
AAGGTCCATAACCGATGCCT+AGG - Chr6:35920765-35920784 MsG0680032194.01.T01:intron 50.0%
ACGGTAGTTCCTCTGCACAT+TGG + Chr6:35922308-35922327 None:intergenic 50.0%
AGACAGTAGTGAGGTGGACA+TGG - Chr6:35922723-35922742 MsG0680032194.01.T01:intron 50.0%
AGCAATGTGAGCAACGAGGA+GGG + Chr6:35922095-35922114 None:intergenic 50.0%
AGGCAGTGTGCATTCCATGT+AGG - Chr6:35919213-35919232 MsG0680032194.01.T01:intron 50.0%
ATGGAGCAATGTGAGCAACG+AGG + Chr6:35922099-35922118 None:intergenic 50.0%
CCTTCAGTTCCCTCGAACAA+AGG - Chr6:35922008-35922027 MsG0680032194.01.T01:CDS 50.0%
CCTTTGTTCGAGGGAACTGA+AGG + Chr6:35922011-35922030 None:intergenic 50.0%
CGGTAGTTCCTCTGCACATT+GGG + Chr6:35922307-35922326 None:intergenic 50.0%
CTACATCTTGTTCCGGTTCC+CGG + Chr6:35923343-35923362 None:intergenic 50.0%
GAACCGGAACAAGATGTAGG+CGG - Chr6:35923344-35923363 MsG0680032194.01.T01:intron 50.0%
GAATCATGGGACAGTGTGGA+AGG - Chr6:35922417-35922436 MsG0680032194.01.T01:intron 50.0%
GATCATCATTGCCCTTGGGT+TGG - Chr6:35922144-35922163 MsG0680032194.01.T01:intron 50.0%
GTCAGTTGCCGTGTCTTACA+GGG - Chr6:35918452-35918471 MsG0680032194.01.T01:CDS 50.0%
GTGATCCGGGGATTATTCCT+AGG - Chr6:35921908-35921927 MsG0680032194.01.T01:CDS 50.0%
GTTGGAGAAGAAGTGGAAGC+TGG - Chr6:35923570-35923589 MsG0680032194.01.T01:intron 50.0%
TAACGGAACTCTTCCTCAGG+CGG + Chr6:35921943-35921962 None:intergenic 50.0%
TACATCTTGTTCCGGTTCCC+GGG + Chr6:35923342-35923361 None:intergenic 50.0%
TCTCCGCCTACATCTTGTTC+CGG + Chr6:35923350-35923369 None:intergenic 50.0%
TGTGTTCAGGGTTTCTCGGT+GGG - Chr6:35919290-35919309 MsG0680032194.01.T01:intron 50.0%
TTGTGTTCAGGGTTTCTCGG+TGG - Chr6:35919289-35919308 MsG0680032194.01.T01:intron 50.0%
TTTCTGCGCGTCAATGATCG+CGG - Chr6:35923648-35923667 MsG0680032194.01.T01:CDS 50.0%
! CAATGCATTGGCCAACCCAA+GGG + Chr6:35922158-35922177 None:intergenic 50.0%
! GGACCTGGTTTGTGCCAATA+AGG + Chr6:35922534-35922553 None:intergenic 50.0%
! TCGGGCTTTAGTTCAAGAGG+AGG - Chr6:35923286-35923305 MsG0680032194.01.T01:intron 50.0%
! TGATTTCTGAGAGCTGGAGC+TGG - Chr6:35921822-35921841 MsG0680032194.01.T01:CDS 50.0%
!! GCCAATGCATTGGACTGGTA+TGG - Chr6:35922166-35922185 MsG0680032194.01.T01:intron 50.0%
!! GGCATCGGTTATGGACCTTA+TGG + Chr6:35920764-35920783 None:intergenic 50.0%
AGGAGGGCGATACAGCATAC+AGG + Chr6:35922079-35922098 None:intergenic 55.0%
CCTTACTTCGGCACGTGATC+CGG - Chr6:35921894-35921913 MsG0680032194.01.T01:CDS 55.0%
CGGGAACCGGAACAAGATGT+AGG - Chr6:35923341-35923360 MsG0680032194.01.T01:intron 55.0%
CTTACTTCGGCACGTGATCC+GGG - Chr6:35921895-35921914 MsG0680032194.01.T01:CDS 55.0%
GAGCAATGTGAGCAACGAGG+AGG + Chr6:35922096-35922115 None:intergenic 55.0%
GGTCAGTTGCCGTGTCTTAC+AGG - Chr6:35918451-35918470 MsG0680032194.01.T01:CDS 55.0%
GTTCGAGGGAACTGAAGGCT+TGG + Chr6:35922006-35922025 None:intergenic 55.0%
TGGTCACCCACCACTGAATC+AGG + Chr6:35920630-35920649 None:intergenic 55.0%
TTACTTCGGCACGTGATCCG+GGG - Chr6:35921896-35921915 MsG0680032194.01.T01:CDS 55.0%
! CCAATGCATTGGCCAACCCA+AGG + Chr6:35922159-35922178 None:intergenic 55.0%
! GGTTGGCCAATGCATTGGAC+TGG - Chr6:35922161-35922180 MsG0680032194.01.T01:intron 55.0%
!! CCTTGGGTTGGCCAATGCAT+TGG - Chr6:35922156-35922175 MsG0680032194.01.T01:intron 55.0%
AGGCGGAGATCCTCGTTCCA+AGG - Chr6:35923361-35923380 MsG0680032194.01.T01:intron 60.0%
AGGTACAGAGGCCACCTCCT+CGG - Chr6:35923306-35923325 MsG0680032194.01.T01:intron 60.0%
ATCTTGTTCCGGTTCCCGGG+TGG + Chr6:35923339-35923358 None:intergenic 60.0%
CAGGGTTTCTCGGTGGGACA+TGG - Chr6:35919296-35919315 MsG0680032194.01.T01:intron 60.0%
CCGGATCACGTGCCGAAGTA+AGG + Chr6:35921897-35921916 None:intergenic 60.0%
CTCCTCGGGTAGTTACCACC+CGG - Chr6:35923321-35923340 MsG0680032194.01.T01:intron 60.0%
GGTAGTTACCACCCGGGAAC+CGG - Chr6:35923328-35923347 MsG0680032194.01.T01:intron 60.0%
GTGGTAACTACCCGAGGAGG+TGG + Chr6:35923320-35923339 None:intergenic 60.0%
TCCTCGGGTAGTTACCACCC+GGG - Chr6:35923322-35923341 MsG0680032194.01.T01:intron 60.0%
CGGGTGGTAACTACCCGAGG+AGG + Chr6:35923323-35923342 None:intergenic 65.0%
GGTACAGAGGCCACCTCCTC+GGG - Chr6:35923307-35923326 MsG0680032194.01.T01:intron 65.0%
TCCCGGGTGGTAACTACCCG+AGG + Chr6:35923326-35923345 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 35918198 35923829 35918198 ID=MsG0680032194.01;Name=MsG0680032194.01
Chr6 mRNA 35918198 35923829 35918198 ID=MsG0680032194.01.T01;Parent=MsG0680032194.01;Name=MsG0680032194.01.T01;_AED=0.45;_eAED=0.49;_QI=0|0.6|0.5|1|0.6|0.5|6|165|465
Chr6 exon 35918198 35918860 35918198 ID=MsG0680032194.01.T01:exon:19584;Parent=MsG0680032194.01.T01
Chr6 exon 35919478 35919711 35919478 ID=MsG0680032194.01.T01:exon:19583;Parent=MsG0680032194.01.T01
Chr6 exon 35919845 35920150 35919845 ID=MsG0680032194.01.T01:exon:19582;Parent=MsG0680032194.01.T01
Chr6 exon 35921778 35922043 35921778 ID=MsG0680032194.01.T01:exon:19581;Parent=MsG0680032194.01.T01
Chr6 exon 35923632 35923689 35923632 ID=MsG0680032194.01.T01:exon:19580;Parent=MsG0680032194.01.T01
Chr6 exon 35923794 35923829 35923794 ID=MsG0680032194.01.T01:exon:19579;Parent=MsG0680032194.01.T01
Chr6 CDS 35923794 35923829 35923794 ID=MsG0680032194.01.T01:cds;Parent=MsG0680032194.01.T01
Chr6 CDS 35923632 35923689 35923632 ID=MsG0680032194.01.T01:cds;Parent=MsG0680032194.01.T01
Chr6 CDS 35921778 35922043 35921778 ID=MsG0680032194.01.T01:cds;Parent=MsG0680032194.01.T01
Chr6 CDS 35919845 35920150 35919845 ID=MsG0680032194.01.T01:cds;Parent=MsG0680032194.01.T01
Chr6 CDS 35919478 35919711 35919478 ID=MsG0680032194.01.T01:cds;Parent=MsG0680032194.01.T01
Chr6 CDS 35918363 35918860 35918363 ID=MsG0680032194.01.T01:cds;Parent=MsG0680032194.01.T01
Chr6 three_prime_UTR 35918198 35918362 35918198 ID=MsG0680032194.01.T01:three_prime_utr;Parent=MsG0680032194.01.T01
Gene Sequence

>MsG0680032194.01.T01

ATGCGACGATTTGACATTATACCATCTACCCAATCGAATTATGAAACTTTGAATGCTGTGTCTGTGTGTTTATGTGCTCTAGTGTGGGATTATCAAGTTTTACTTTTTAATGACCAATTATCTGTTATATATAAAAGTTCTATTTCATTTCAAAATTCTTATAATCTTATGCAGAAATTCCTATTTGGAGGAAGGCTTATATTTGGGCCTGATGCTAAGTCATTGCTTATCAGTTTGGTGCTGGTCATAGTTCCGGTTATCATCTTTTGTGTATTCGTAGCAAGGCATCTTCGGCACCATTTTTCTTCATATAATGCAGGATATGCTATTTTGGTGGTGGCAGTTCTCTTCAATATTTATGTGCTGATACTTCTCTTCCTTACTTCGGCACGTGATCCGGGGATTATTCCTAGGAATTTACATCCGCCTGAGGAAGAGTTCCGTTATGACTCGTCCGTTTCTATTGACATTGGGGGAAGACAAACACCAAGCCTTCAGTTCCCTCGAACAAAGGAAGTAATGGTCAATGGCCTTCCTGTAAGAGTGAAGTATTGTGATACCTGTATGCTGTATCGCCCTCCTCGTTGCTCACATTGCTCCATTTGCAACAATTGTGTTGAACGTTTTGATCATCATTGCCCTTGGGTTGGCCAATGCATTGGACTGAGGAACTACCGTTACTTCTTTATGTTTGTTTCTTCGGCAACTCTTCTATGCATCTATGTGTTTTCAATCTCAGCTTTTTACATCAAGGTTTTGATGGATGAGAATCATGGGACAGTGTGGAAGGCAATGAAAGAATCCCCTGCATCTGTCATACTAATGGCATACTGTTTCATCTCTTTGTGGTTTGTTGGTGGACTAACTGGCTTTCATTTGTACCTTATTGGCACAAACCAGACCACCTATGAAAACTTTCGATACAGAGCAGATAACAGGATCAATGTTTACAATCGGGGGTGTTTAAATAATTTTCTGGAAGTATTTTGTACAAAAGTGAAGCCTTCAAGGAACAATTTTCGGGCTTTAGTTCAAGAGGAGGTACAGAGGCCACCTCCTCGGGTAGTTACCACCCGGGAACCGGAACAAGATGTAGGCGGAGATCCTCGTTCCAAGGTTGAAGATGATCTAGACATCGGTGAAGACCTATTAAAGATATCACAGCGGCGGAATATTGAAGAAATCGATGAAGACATAAGGAGCAGAGGTAGCAATGGACCTTACAACAATGCATCTGAAGGTGATTCAGTTCTGGGCTCAGATCGTCGAGCTCCAACAGTTCAACCAGAAGAAAGGCACTCAAGTTGGAGAAGAAGTGGAAGCTGGGAAATTGCGCCAGATGTACTTGCCAATTCAAATGTAACTGAAACTAGAAGCTATGTTTCTGCGCGTCAATGA
Protein sequence

>MsG0680032194.01.T01

MRRFDIIPSTQSNYETLNAVSVCLCALVWDYQVLLFNDQLSVIYKSSISFQNSYNLMQKFLFGGRLIFGPDAKSLLISLVLVIVPVIIFCVFVARHLRHHFSSYNAGYAILVVAVLFNIYVLILLFLTSARDPGIIPRNLHPPEEEFRYDSSVSIDIGGRQTPSLQFPRTKEVMVNGLPVRVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRYFFMFVSSATLLCIYVFSISAFYIKVLMDENHGTVWKAMKESPASVILMAYCFISLWFVGGLTGFHLYLIGTNQTTYENFRYRADNRINVYNRGCLNNFLEVFCTKVKPSRNNFRALVQEEVQRPPPRVVTTREPEQDVGGDPRSKVEDDLDIGEDLLKISQRRNIEEIDEDIRSRGSNGPYNNASEGDSVLGSDRRAPTVQPEERHSSWRRSGSWEIAPDVLANSNVTETRSYVSARQ*