Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033030.01.T01 | XP_013452181.1 | 91.137 | 677 | 34 | 8 | 1 | 666 | 1 | 662 | 0 | 1092 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033030.01.T01 | Q9FYR7 | 45.808 | 668 | 274 | 23 | 31 | 666 | 29 | 640 | 8.28E-143 | 433 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033030.01.T01 | A0A072U8U5 | 91.137 | 677 | 34 | 8 | 1 | 666 | 1 | 662 | 0.0 | 1092 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0680033030.01.T01 | TF | GRAS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0680033030.01 | MsG0880047126.01 | 0.810479 | 1.129148e-50 | 6.813806e-48 |
| MsG0380016675.01 | MsG0680033030.01 | 0.810127 | 1.345323e-50 | 8.043355e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033030.01.T01 | MTR_6g047750 | 91.137 | 677 | 34 | 8 | 1 | 666 | 1 | 662 | 0.0 | 1092 |
| MsG0680033030.01.T01 | MTR_7g057230 | 46.479 | 710 | 281 | 22 | 1 | 665 | 1 | 656 | 5.97e-173 | 509 |
| MsG0680033030.01.T01 | MTR_3g089055 | 36.326 | 479 | 247 | 14 | 217 | 666 | 116 | 565 | 1.15e-79 | 264 |
| MsG0680033030.01.T01 | MTR_3g089055 | 36.326 | 479 | 247 | 14 | 217 | 666 | 121 | 570 | 1.20e-79 | 264 |
| MsG0680033030.01.T01 | MTR_1g029420 | 39.386 | 391 | 195 | 10 | 297 | 666 | 223 | 592 | 1.48e-75 | 254 |
| MsG0680033030.01.T01 | MTR_2g082090 | 34.227 | 485 | 261 | 15 | 214 | 665 | 119 | 578 | 1.16e-63 | 221 |
| MsG0680033030.01.T01 | MTR_5g097480 | 34.343 | 396 | 208 | 13 | 297 | 666 | 175 | 544 | 7.39e-60 | 210 |
| MsG0680033030.01.T01 | MTR_3g056110 | 35.309 | 388 | 215 | 11 | 297 | 666 | 173 | 542 | 5.47e-59 | 207 |
| MsG0680033030.01.T01 | MTR_2g026250 | 31.139 | 395 | 223 | 11 | 297 | 666 | 226 | 596 | 5.05e-55 | 198 |
| MsG0680033030.01.T01 | MTR_4g133660 | 32.208 | 385 | 230 | 10 | 297 | 665 | 173 | 542 | 1.91e-54 | 195 |
| MsG0680033030.01.T01 | MTR_5g094450 | 34.015 | 391 | 220 | 11 | 297 | 666 | 159 | 532 | 1.66e-53 | 192 |
| MsG0680033030.01.T01 | MTR_4g074320 | 52.356 | 191 | 77 | 4 | 241 | 426 | 4 | 185 | 3.30e-48 | 167 |
| MsG0680033030.01.T01 | MTR_4g074310 | 40.083 | 242 | 101 | 6 | 301 | 539 | 1 | 201 | 2.78e-42 | 153 |
| MsG0680033030.01.T01 | MTR_3g065980 | 30.179 | 391 | 230 | 12 | 298 | 666 | 171 | 540 | 2.97e-35 | 140 |
| MsG0680033030.01.T01 | MTR_8g442410 | 29.897 | 388 | 237 | 12 | 298 | 666 | 154 | 525 | 4.17e-34 | 137 |
| MsG0680033030.01.T01 | MTR_7g027190 | 28.889 | 405 | 218 | 13 | 300 | 666 | 301 | 673 | 2.44e-33 | 136 |
| MsG0680033030.01.T01 | MTR_4g104020 | 29.847 | 392 | 233 | 15 | 298 | 666 | 148 | 520 | 1.68e-30 | 126 |
| MsG0680033030.01.T01 | MTR_4g064150 | 24.479 | 384 | 265 | 8 | 297 | 665 | 359 | 732 | 7.85e-30 | 126 |
| MsG0680033030.01.T01 | MTR_2g097410 | 25.450 | 389 | 261 | 12 | 293 | 665 | 365 | 740 | 6.25e-29 | 123 |
| MsG0680033030.01.T01 | MTR_4g064200 | 26.385 | 379 | 252 | 10 | 300 | 665 | 285 | 649 | 8.60e-29 | 122 |
| MsG0680033030.01.T01 | MTR_4g097080 | 26.650 | 394 | 246 | 12 | 296 | 666 | 130 | 503 | 1.87e-28 | 120 |
| MsG0680033030.01.T01 | MTR_2g097467 | 25.328 | 458 | 304 | 14 | 228 | 665 | 214 | 653 | 3.45e-27 | 117 |
| MsG0680033030.01.T01 | MTR_2g097350 | 26.211 | 454 | 300 | 13 | 228 | 665 | 205 | 639 | 4.93e-27 | 117 |
| MsG0680033030.01.T01 | MTR_4g064160 | 25.916 | 382 | 258 | 9 | 297 | 665 | 314 | 683 | 5.20e-27 | 117 |
| MsG0680033030.01.T01 | MTR_2g097463 | 27.437 | 277 | 183 | 6 | 398 | 665 | 387 | 654 | 4.35e-26 | 114 |
| MsG0680033030.01.T01 | MTR_7g062120 | 23.040 | 421 | 289 | 12 | 267 | 666 | 334 | 740 | 5.39e-26 | 114 |
| MsG0680033030.01.T01 | MTR_2g097473 | 26.377 | 345 | 225 | 10 | 335 | 665 | 324 | 653 | 2.94e-25 | 111 |
| MsG0680033030.01.T01 | MTR_2g097390 | 25.948 | 343 | 230 | 10 | 335 | 665 | 310 | 640 | 4.67e-25 | 110 |
| MsG0680033030.01.T01 | MTR_2g097310 | 24.494 | 445 | 306 | 13 | 234 | 665 | 210 | 637 | 1.90e-24 | 108 |
| MsG0680033030.01.T01 | MTR_5g015950 | 25.472 | 424 | 254 | 10 | 295 | 665 | 31 | 445 | 2.02e-23 | 104 |
| MsG0680033030.01.T01 | MTR_3g053270 | 25.472 | 424 | 254 | 10 | 295 | 665 | 31 | 445 | 2.02e-23 | 104 |
| MsG0680033030.01.T01 | MTR_7g074650 | 28.818 | 347 | 209 | 12 | 333 | 666 | 471 | 792 | 4.42e-23 | 105 |
| MsG0680033030.01.T01 | MTR_4g102790 | 31.111 | 270 | 165 | 10 | 405 | 665 | 404 | 661 | 7.48e-23 | 103 |
| MsG0680033030.01.T01 | MTR_4g064120 | 22.190 | 347 | 246 | 7 | 332 | 663 | 286 | 623 | 1.97e-22 | 102 |
| MsG0680033030.01.T01 | MTR_4g064180 | 22.543 | 346 | 244 | 7 | 333 | 663 | 287 | 623 | 5.25e-22 | 101 |
| MsG0680033030.01.T01 | MTR_2g097380 | 24.260 | 338 | 213 | 8 | 335 | 665 | 259 | 560 | 1.95e-21 | 99.0 |
| MsG0680033030.01.T01 | MTR_4g095500 | 25.635 | 433 | 240 | 12 | 295 | 665 | 55 | 467 | 5.90e-20 | 94.0 |
| MsG0680033030.01.T01 | MTR_1g069725 | 25.201 | 373 | 252 | 10 | 300 | 665 | 110 | 462 | 8.97e-20 | 93.2 |
| MsG0680033030.01.T01 | MTR_2g034260 | 25.236 | 424 | 266 | 15 | 271 | 666 | 184 | 584 | 7.90e-19 | 90.9 |
| MsG0680033030.01.T01 | MTR_2g034250 | 30.182 | 275 | 164 | 10 | 405 | 666 | 326 | 585 | 2.39e-18 | 89.4 |
| MsG0680033030.01.T01 | MTR_3g022830 | 24.249 | 433 | 240 | 20 | 300 | 666 | 26 | 436 | 2.78e-18 | 88.6 |
| MsG0680033030.01.T01 | MTR_5g015490 | 25.130 | 386 | 260 | 10 | 300 | 666 | 115 | 490 | 3.70e-18 | 88.6 |
| MsG0680033030.01.T01 | MTR_1g096030 | 27.518 | 407 | 227 | 14 | 300 | 666 | 81 | 459 | 5.00e-18 | 87.8 |
| MsG0680033030.01.T01 | MTR_7g109580 | 27.206 | 272 | 172 | 8 | 405 | 666 | 299 | 554 | 1.52e-16 | 83.6 |
| MsG0680033030.01.T01 | MTR_4g076140 | 25.212 | 353 | 200 | 10 | 371 | 666 | 124 | 469 | 1.62e-16 | 83.2 |
| MsG0680033030.01.T01 | MTR_2g034280 | 28.727 | 275 | 167 | 10 | 405 | 666 | 317 | 575 | 2.55e-16 | 83.2 |
| MsG0680033030.01.T01 | MTR_5g009080 | 30.968 | 155 | 96 | 3 | 518 | 666 | 329 | 478 | 5.41e-15 | 78.6 |
| MsG0680033030.01.T01 | MTR_4g076020 | 26.333 | 300 | 177 | 12 | 376 | 666 | 165 | 429 | 5.93e-13 | 72.0 |
| MsG0680033030.01.T01 | MTR_3g072710 | 26.433 | 314 | 188 | 13 | 371 | 665 | 210 | 499 | 9.92e-13 | 71.6 |
| MsG0680033030.01.T01 | MTR_5g058860 | 25.316 | 395 | 248 | 15 | 300 | 665 | 120 | 496 | 6.81e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033030.01.T01 | AT5G52510 | 45.808 | 668 | 274 | 23 | 31 | 666 | 29 | 640 | 8.45e-144 | 433 |
| MsG0680033030.01.T01 | AT1G21450 | 36.864 | 472 | 240 | 14 | 217 | 666 | 158 | 593 | 4.90e-75 | 252 |
| MsG0680033030.01.T01 | AT2G04890 | 35.079 | 382 | 217 | 11 | 297 | 666 | 51 | 413 | 1.56e-59 | 206 |
| MsG0680033030.01.T01 | AT5G48150 | 35.806 | 391 | 210 | 10 | 297 | 666 | 120 | 490 | 3.48e-58 | 204 |
| MsG0680033030.01.T01 | AT5G48150 | 35.806 | 391 | 210 | 10 | 297 | 666 | 120 | 490 | 3.48e-58 | 204 |
| MsG0680033030.01.T01 | AT5G48150 | 35.806 | 391 | 210 | 10 | 297 | 666 | 120 | 490 | 3.48e-58 | 204 |
| MsG0680033030.01.T01 | AT5G48150 | 35.806 | 391 | 210 | 10 | 297 | 666 | 120 | 490 | 3.48e-58 | 204 |
| MsG0680033030.01.T01 | AT4G17230 | 33.766 | 385 | 225 | 9 | 297 | 666 | 156 | 525 | 1.96e-55 | 197 |
| MsG0680033030.01.T01 | AT4G17230 | 33.766 | 385 | 225 | 9 | 297 | 666 | 156 | 525 | 1.96e-55 | 197 |
| MsG0680033030.01.T01 | AT1G50600 | 33.247 | 385 | 227 | 9 | 297 | 666 | 157 | 526 | 4.20e-52 | 188 |
| MsG0680033030.01.T01 | AT1G50600 | 33.247 | 385 | 227 | 9 | 297 | 666 | 228 | 597 | 7.21e-52 | 189 |
| MsG0680033030.01.T01 | AT1G50600 | 33.247 | 385 | 227 | 9 | 297 | 666 | 232 | 601 | 1.05e-51 | 189 |
| MsG0680033030.01.T01 | AT2G01570 | 30.871 | 379 | 232 | 10 | 298 | 666 | 223 | 581 | 4.40e-36 | 144 |
| MsG0680033030.01.T01 | AT2G29060 | 27.146 | 431 | 277 | 13 | 262 | 665 | 234 | 654 | 1.65e-35 | 143 |
| MsG0680033030.01.T01 | AT2G29060 | 27.146 | 431 | 277 | 13 | 262 | 665 | 271 | 691 | 1.76e-35 | 143 |
| MsG0680033030.01.T01 | AT1G14920 | 29.551 | 379 | 237 | 10 | 298 | 666 | 171 | 529 | 1.97e-35 | 141 |
| MsG0680033030.01.T01 | AT1G66350 | 28.947 | 418 | 264 | 12 | 261 | 666 | 110 | 506 | 7.28e-34 | 136 |
| MsG0680033030.01.T01 | AT3G03450 | 32.667 | 300 | 184 | 6 | 373 | 666 | 258 | 545 | 9.16e-34 | 136 |
| MsG0680033030.01.T01 | AT5G59450 | 25.750 | 400 | 271 | 8 | 282 | 666 | 210 | 598 | 1.05e-33 | 137 |
| MsG0680033030.01.T01 | AT1G07530 | 25.427 | 468 | 308 | 15 | 226 | 665 | 310 | 764 | 7.87e-33 | 135 |
| MsG0680033030.01.T01 | AT5G17490 | 29.708 | 377 | 238 | 11 | 300 | 666 | 157 | 516 | 2.46e-31 | 129 |
| MsG0680033030.01.T01 | AT2G29065 | 26.494 | 385 | 254 | 11 | 300 | 665 | 253 | 627 | 2.45e-29 | 124 |
| MsG0680033030.01.T01 | AT3G46600 | 24.479 | 384 | 256 | 9 | 300 | 666 | 5 | 371 | 9.84e-28 | 115 |
| MsG0680033030.01.T01 | AT3G46600 | 23.060 | 451 | 307 | 10 | 233 | 666 | 120 | 547 | 1.43e-27 | 118 |
| MsG0680033030.01.T01 | AT3G46600 | 23.318 | 446 | 302 | 10 | 238 | 666 | 157 | 579 | 1.57e-27 | 118 |
| MsG0680033030.01.T01 | AT1G07520 | 23.077 | 390 | 274 | 10 | 293 | 665 | 312 | 692 | 5.22e-24 | 107 |
| MsG0680033030.01.T01 | AT1G07520 | 23.077 | 390 | 274 | 10 | 293 | 665 | 313 | 693 | 5.56e-24 | 107 |
| MsG0680033030.01.T01 | AT3G50650 | 31.788 | 302 | 177 | 12 | 381 | 666 | 254 | 542 | 8.30e-24 | 106 |
| MsG0680033030.01.T01 | AT2G37650 | 24.615 | 390 | 253 | 11 | 297 | 666 | 345 | 713 | 1.60e-23 | 106 |
| MsG0680033030.01.T01 | AT2G37650 | 24.615 | 390 | 253 | 11 | 297 | 666 | 333 | 701 | 1.88e-23 | 105 |
| MsG0680033030.01.T01 | AT5G66770 | 30.058 | 346 | 213 | 12 | 335 | 666 | 254 | 584 | 2.12e-23 | 105 |
| MsG0680033030.01.T01 | AT1G07520 | 23.077 | 390 | 274 | 10 | 293 | 665 | 148 | 528 | 2.80e-23 | 104 |
| MsG0680033030.01.T01 | AT1G07520 | 23.077 | 390 | 274 | 10 | 293 | 665 | 148 | 528 | 2.80e-23 | 104 |
| MsG0680033030.01.T01 | AT3G54220 | 28.726 | 369 | 219 | 16 | 316 | 665 | 306 | 649 | 4.97e-22 | 101 |
| MsG0680033030.01.T01 | AT3G49950 | 26.087 | 391 | 256 | 13 | 297 | 665 | 28 | 407 | 2.75e-21 | 97.4 |
| MsG0680033030.01.T01 | AT4G37650 | 25.871 | 402 | 252 | 12 | 296 | 666 | 143 | 529 | 8.84e-21 | 97.1 |
| MsG0680033030.01.T01 | AT1G50420 | 32.258 | 155 | 94 | 3 | 518 | 666 | 330 | 479 | 7.66e-17 | 84.3 |
| MsG0680033030.01.T01 | AT2G45160 | 25.956 | 366 | 240 | 12 | 314 | 666 | 292 | 639 | 7.42e-16 | 81.6 |
| MsG0680033030.01.T01 | AT1G55580 | 22.410 | 415 | 266 | 11 | 297 | 666 | 42 | 445 | 1.69e-14 | 76.6 |
| MsG0680033030.01.T01 | AT1G63100 | 28.037 | 214 | 139 | 8 | 405 | 612 | 388 | 592 | 1.08e-12 | 71.6 |
| MsG0680033030.01.T01 | AT1G63100 | 28.037 | 214 | 139 | 8 | 405 | 612 | 363 | 567 | 1.37e-12 | 71.2 |
| MsG0680033030.01.T01 | AT4G08250 | 26.367 | 311 | 194 | 12 | 371 | 665 | 185 | 476 | 4.46e-12 | 69.3 |
Find 144 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGTAATGATGAAAATTT+TGG | 0.163576 | 6:+55203253 | None:intergenic |
| GTTGTTGATGTTGTTGTTCT+TGG | 0.179909 | 6:+55203411 | None:intergenic |
| ATTGGGCCGGGGCCTGGGCC+TGG | 0.188103 | 6:-55202997 | MsG0680033030.01.T01:CDS |
| AAAATGATAAAGGGGTATTA+TGG | 0.196630 | 6:+55203358 | None:intergenic |
| AATCTAATTGGGCCGGGGCC+TGG | 0.202228 | 6:-55203003 | MsG0680033030.01.T01:CDS |
| ATCTAATTGGGCCGGGGCCT+GGG | 0.236827 | 6:-55203002 | MsG0680033030.01.T01:CDS |
| GAGACTTATCAGAATCTAAT+TGG | 0.254281 | 6:-55203015 | MsG0680033030.01.T01:CDS |
| TGAGTTGACTCGCGAGTTAT+TGG | 0.276169 | 6:-55202314 | MsG0680033030.01.T01:CDS |
| TTGGGCCGGGGCCTGGGCCT+GGG | 0.276691 | 6:-55202996 | MsG0680033030.01.T01:CDS |
| TAAGGGTATTGTTGTAATTC+AGG | 0.276863 | 6:+55203330 | None:intergenic |
| TTGTTTCAAGGTTGGTTTCA+TGG | 0.293135 | 6:-55202620 | MsG0680033030.01.T01:CDS |
| CCTGTTGTTGCGGAATTGTT+CGG | 0.297926 | 6:-55202688 | MsG0680033030.01.T01:CDS |
| GGCGCGTGTTGCGGAGTCTT+GGG | 0.309205 | 6:-55202113 | MsG0680033030.01.T01:CDS |
| GCCTGGGCCTGGGCCTGGTC+AGG | 0.310562 | 6:-55202986 | MsG0680033030.01.T01:CDS |
| CCGGGGCCTGGGCCTGGGCC+TGG | 0.316700 | 6:-55202991 | MsG0680033030.01.T01:CDS |
| CATTACAGAAACTCTAATTT+AGG | 0.320361 | 6:-55203240 | MsG0680033030.01.T01:CDS |
| TTCAATGCCGGCGGTGGTGC+TGG | 0.325741 | 6:-55203738 | MsG0680033030.01.T01:CDS |
| CTGTTGTTGCGGAATTGTTC+GGG | 0.326798 | 6:-55202687 | MsG0680033030.01.T01:CDS |
| TGGGATTTGCTTTGGTTGGA+TGG | 0.327746 | 6:-55201810 | MsG0680033030.01.T01:CDS |
| TCAGGTAATGAAAATGATAA+AGG | 0.330635 | 6:+55203348 | None:intergenic |
| GAATCTGAATTCGATGAATT+CGG | 0.332765 | 6:-55202776 | MsG0680033030.01.T01:CDS |
| GTGGTTGTTGTTGTTGGTGT+TGG | 0.343132 | 6:+55203610 | None:intergenic |
| CACTCACGGTTGCTTCTGTT+TGG | 0.353225 | 6:-55201781 | MsG0680033030.01.T01:CDS |
| GTTGTTGTGGTGGTTGGTGG+TGG | 0.359420 | 6:+55203662 | None:intergenic |
| TGGCGCGTGTTGCGGAGTCT+TGG | 0.359860 | 6:-55202114 | MsG0680033030.01.T01:CDS |
| ATTAAGTCGCGACTCAATAT+TGG | 0.361285 | 6:-55201884 | MsG0680033030.01.T01:CDS |
| CGCTGTTTCAATGTCATCGC+CGG | 0.371301 | 6:-55203763 | None:intergenic |
| ATGGTGGTTGTTGTGGTGGT+TGG | 0.374021 | 6:+55203656 | None:intergenic |
| GTGGTTGTTGTGGTGGTTGG+TGG | 0.374865 | 6:+55203659 | None:intergenic |
| CAGGTAATGAAAATGATAAA+GGG | 0.377623 | 6:+55203349 | None:intergenic |
| GAGTCGAAAATTGTGTAATT+TGG | 0.380694 | 6:-55202023 | MsG0680033030.01.T01:CDS |
| CTCGGTTCAACCGGTTCAAA+CGG | 0.384742 | 6:-55203205 | MsG0680033030.01.T01:CDS |
| AAATGATAAAGGGGTATTAT+GGG | 0.393809 | 6:+55203359 | None:intergenic |
| TGGTTGTTGTTGTTGGTGTT+GGG | 0.398657 | 6:+55203611 | None:intergenic |
| GCCTGACCAGGCCCAGGCCC+AGG | 0.407060 | 6:+55202985 | None:intergenic |
| GAGGAAGTGGTTGTTGTTGT+TGG | 0.408288 | 6:+55203604 | None:intergenic |
| AAACGTTGTGTTTGGTGGTA+AGG | 0.410588 | 6:+55203312 | None:intergenic |
| GAGTTGACTCGCGAGTTATT+GGG | 0.414095 | 6:-55202313 | MsG0680033030.01.T01:CDS |
| CCAGGCCCAGGCCCAGGCCC+CGG | 0.416313 | 6:+55202991 | None:intergenic |
| GCGTGAGGGGTTTAAGTTGA+AGG | 0.417985 | 6:-55202467 | MsG0680033030.01.T01:CDS |
| ATGGTGGGATTTGCTTTGGT+TGG | 0.418527 | 6:-55201814 | MsG0680033030.01.T01:CDS |
| TTTCGAGTTTCGTGTTGTTT+CGG | 0.418985 | 6:-55202356 | MsG0680033030.01.T01:CDS |
| CAAGCGGAGAAGCTAAGAAT+TGG | 0.420635 | 6:-55202379 | MsG0680033030.01.T01:CDS |
| AATAATAAACTCGGTTCAAC+CGG | 0.425303 | 6:-55203214 | MsG0680033030.01.T01:CDS |
| ATGGCGCGCAAGGATGAGTA+TGG | 0.425941 | 6:-55201951 | MsG0680033030.01.T01:CDS |
| GGAAAACTCGGTTTGTTTCA+AGG | 0.430920 | 6:-55202632 | MsG0680033030.01.T01:CDS |
| TCAAGCACAAGCTCAGAAAC+TGG | 0.431854 | 6:-55202962 | MsG0680033030.01.T01:CDS |
| GGTTCAAACGGTTCAACAAC+CGG | 0.434886 | 6:-55203193 | MsG0680033030.01.T01:CDS |
| CTCCTTTCTCTATCTTGACT+CGG | 0.444881 | 6:+55202047 | None:intergenic |
| GGGATTTGCTTTGGTTGGAT+GGG | 0.446689 | 6:-55201809 | MsG0680033030.01.T01:CDS |
| TCCGTTGACACACTTTCATC+CGG | 0.449000 | 6:+55202235 | None:intergenic |
| GAACACCTAAACGTTGTGTT+TGG | 0.450513 | 6:+55203304 | None:intergenic |
| TAACGAGTCGCGAGTTAACT+CGG | 0.451482 | 6:-55201858 | MsG0680033030.01.T01:CDS |
| GAGAATGGTGGGATTTGCTT+TGG | 0.460359 | 6:-55201818 | MsG0680033030.01.T01:CDS |
| CGCGCAAGGATGAGTATGGC+GGG | 0.461869 | 6:-55201947 | MsG0680033030.01.T01:CDS |
| GTATAAGCTGAATAGAATTC+CGG | 0.464091 | 6:-55202254 | MsG0680033030.01.T01:CDS |
| CACCTAAACGTTGTGTTTGG+TGG | 0.465276 | 6:+55203307 | None:intergenic |
| CCGGGTTTCAATGCCGGCGG+TGG | 0.465704 | 6:-55203744 | MsG0680033030.01.T01:CDS |
| GCTTGTGCTTGAGCCTGACC+AGG | 0.466408 | 6:+55202973 | None:intergenic |
| GTTGTTGTTGGTGTTGGGTA+CGG | 0.466828 | 6:+55203616 | None:intergenic |
| GTTGAAGGTTGTTGCGGTGG+CGG | 0.467280 | 6:-55202452 | MsG0680033030.01.T01:CDS |
| ATCGCGTGAGGCGGCGCGTG+AGG | 0.468911 | 6:-55202482 | MsG0680033030.01.T01:CDS |
| CCGAACAATTCCGCAACAAC+AGG | 0.470616 | 6:+55202688 | None:intergenic |
| TCAACGGTTAGCGAATTTCA+TGG | 0.471865 | 6:-55202752 | MsG0680033030.01.T01:CDS |
| GTTGAAATCGAGGATGAATC+CGG | 0.473635 | 6:-55202722 | MsG0680033030.01.T01:CDS |
| GGTTGTTGAACCGTTTGAAC+CGG | 0.473834 | 6:+55203195 | None:intergenic |
| GCTTGAGCCTGACCAGGCCC+AGG | 0.481659 | 6:+55202979 | None:intergenic |
| CGCGCTAAAATCGCGTGAGG+CGG | 0.481708 | 6:-55202491 | MsG0680033030.01.T01:CDS |
| GTTGTTGCGGTGGCGGAGAA+CGG | 0.484971 | 6:-55202445 | MsG0680033030.01.T01:CDS |
| AGACTTATCAGAATCTAATT+GGG | 0.485068 | 6:-55203014 | MsG0680033030.01.T01:CDS |
| TCATCGCCGGGTTTCAATGC+CGG | 0.485973 | 6:-55203750 | MsG0680033030.01.T01:CDS |
| AACTCGGTTTGTTTCAAGGT+TGG | 0.489425 | 6:-55202628 | MsG0680033030.01.T01:CDS |
| GCTCAAACCATGACCATGTC+CGG | 0.491270 | 6:-55203171 | MsG0680033030.01.T01:CDS |
| AACGTTGTGTTTGGTGGTAA+GGG | 0.491304 | 6:+55203313 | None:intergenic |
| ATTTGGTGGCTTGTGAAGGT+AGG | 0.494402 | 6:-55202006 | MsG0680033030.01.T01:CDS |
| CTCGACCGAGTCACATAAAG+AGG | 0.495035 | 6:+55202081 | None:intergenic |
| GACCGAGTCAAGATAGAGAA+AGG | 0.495233 | 6:-55202049 | MsG0680033030.01.T01:CDS |
| TTGCTTTAGAGATCTTGAAC+AGG | 0.498596 | 6:-55202813 | MsG0680033030.01.T01:CDS |
| TCGCGTGAGGCGGCGCGTGA+GGG | 0.500843 | 6:-55202481 | MsG0680033030.01.T01:CDS |
| TACCACCAAACACAACGTTT+AGG | 0.501366 | 6:-55203309 | MsG0680033030.01.T01:CDS |
| TCAGTTGTTGTTGGAAAACT+CGG | 0.502026 | 6:-55202644 | MsG0680033030.01.T01:CDS |
| CTGTTATTACAACAAGTGAA+TGG | 0.505097 | 6:-55203041 | MsG0680033030.01.T01:CDS |
| TATCAGAATCTAATTGGGCC+GGG | 0.505788 | 6:-55203009 | MsG0680033030.01.T01:CDS |
| GAAGATGGTGGTTGTTGTGG+TGG | 0.506090 | 6:+55203652 | None:intergenic |
| GAAGCTGCATTTGAAGAAAA+CGG | 0.506260 | 6:-55202577 | MsG0680033030.01.T01:CDS |
| GCTGTTTCAATGTCATCGCC+GGG | 0.507997 | 6:-55203762 | None:intergenic |
| TCGAAAATTGTGTAATTTGG+TGG | 0.512098 | 6:-55202020 | MsG0680033030.01.T01:CDS |
| TTATCAGAATCTAATTGGGC+CGG | 0.515010 | 6:-55203010 | MsG0680033030.01.T01:CDS |
| ATCCAACAAAATCGCTTCAT+CGG | 0.515958 | 6:-55203555 | MsG0680033030.01.T01:CDS |
| CGCGTGAGGCGGCGCGTGAG+GGG | 0.518726 | 6:-55202480 | MsG0680033030.01.T01:CDS |
| TTACTCCTCTTTATGTGACT+CGG | 0.520089 | 6:-55202086 | MsG0680033030.01.T01:CDS |
| GATGACGTTGTTGATGAAGT+TGG | 0.523797 | 6:+55202928 | None:intergenic |
| TTTCTCTATCTTGACTCGGT+CGG | 0.524062 | 6:+55202051 | None:intergenic |
| CCACCGCCGGCATTGAAACC+CGG | 0.525923 | 6:+55203744 | None:intergenic |
| CGGCGGTGGTGCTGGCTCGT+CGG | 0.527842 | 6:-55203730 | MsG0680033030.01.T01:CDS |
| CTCGAAGATAACGACGAAGA+AGG | 0.529522 | 6:-55203081 | MsG0680033030.01.T01:CDS |
| CTCTTTATGTGACTCGGTCG+AGG | 0.530688 | 6:-55202080 | MsG0680033030.01.T01:CDS |
| TGAGTCGACTCAGTTGTTGT+TGG | 0.533088 | 6:-55202653 | MsG0680033030.01.T01:CDS |
| TCACACTCTTCTACAAGAGT+TGG | 0.538873 | 6:-55203115 | MsG0680033030.01.T01:CDS |
| TTTAGAGATCTTGAACAGGT+TGG | 0.541908 | 6:-55202809 | MsG0680033030.01.T01:CDS |
| GACATGGTCATGGTTTGAGC+CGG | 0.544834 | 6:+55203174 | None:intergenic |
| TAACGACGAAGAAGGTGAAA+CGG | 0.546401 | 6:-55203073 | MsG0680033030.01.T01:CDS |
| GCGCGTGTTGCGGAGTCTTG+GGG | 0.548940 | 6:-55202112 | MsG0680033030.01.T01:CDS |
| TTTGGTGGCTTGTGAAGGTA+GGG | 0.553999 | 6:-55202005 | MsG0680033030.01.T01:CDS |
| GAAACTCGCGCCGCGTGTTG+TGG | 0.562154 | 6:-55202179 | MsG0680033030.01.T01:CDS |
| TGAAAATCCACCTGTTGTTG+CGG | 0.565636 | 6:-55202698 | MsG0680033030.01.T01:CDS |
| ATCAGAATCTAATTGGGCCG+GGG | 0.566190 | 6:-55203008 | MsG0680033030.01.T01:CDS |
| AACGAGTCGCGAGTTAACTC+GGG | 0.568702 | 6:-55201857 | MsG0680033030.01.T01:CDS |
| GAAGAAGATGGTGGTTGTTG+TGG | 0.571020 | 6:+55203649 | None:intergenic |
| CGACGAGCCAGCACCACCGC+CGG | 0.576724 | 6:+55203731 | None:intergenic |
| TCCGGATGAAAGTGTGTCAA+CGG | 0.577258 | 6:-55202236 | MsG0680033030.01.T01:CDS |
| TAGCTGTGGGTGAGATGTTG+AGG | 0.577796 | 6:-55202405 | MsG0680033030.01.T01:CDS |
| GTTTAAGTTGAAGGTTGTTG+CGG | 0.578524 | 6:-55202458 | MsG0680033030.01.T01:CDS |
| AACAATTCCGCAACAACAGG+TGG | 0.579323 | 6:+55202691 | None:intergenic |
| CTCAGTGTGAAAGAAGAGAA+TGG | 0.580110 | 6:-55201833 | MsG0680033030.01.T01:CDS |
| GCTGCAAATGCGATTTCAGA+AGG | 0.580818 | 6:-55202847 | MsG0680033030.01.T01:CDS |
| AGGTAATGAAAATGATAAAG+GGG | 0.584050 | 6:+55203350 | None:intergenic |
| GTCATCAACTTCTTCATCAG+CGG | 0.587327 | 6:-55202911 | MsG0680033030.01.T01:CDS |
| GTGTGAAAGAAGAGAATGGT+GGG | 0.588009 | 6:-55201829 | MsG0680033030.01.T01:CDS |
| GTTGTTGGTTGATGAAGAAG+AGG | 0.588575 | 6:+55203282 | None:intergenic |
| TAAGTTGAAGGTTGTTGCGG+TGG | 0.592167 | 6:-55202455 | MsG0680033030.01.T01:CDS |
| TGTAATTTGGTGGCTTGTGA+AGG | 0.595457 | 6:-55202010 | MsG0680033030.01.T01:CDS |
| GGTAAAGAGAAGGAAGAAGA+TGG | 0.595546 | 6:+55203637 | None:intergenic |
| TGGTGAGAGCGTTGAAATCG+AGG | 0.600312 | 6:-55202732 | MsG0680033030.01.T01:CDS |
| TTTAGGTCAAATAATAAACT+CGG | 0.600647 | 6:-55203223 | MsG0680033030.01.T01:CDS |
| CGCCGCAAAAGTGTGTCACG+TGG | 0.618368 | 6:+55202208 | None:intergenic |
| TGTTGGGTACGGTAAAGAGA+AGG | 0.618648 | 6:+55203627 | None:intergenic |
| ATTCGATGAATTCGGATCAA+CGG | 0.621073 | 6:-55202768 | MsG0680033030.01.T01:CDS |
| GTTGCGGTGGCGGAGAACGG+CGG | 0.627141 | 6:-55202442 | MsG0680033030.01.T01:CDS |
| AAGGTAGGGATCGTGTCGAA+AGG | 0.628894 | 6:-55201991 | MsG0680033030.01.T01:CDS |
| GCCGCGTGTTGTGGTTGTTG+TGG | 0.629120 | 6:-55202170 | MsG0680033030.01.T01:CDS |
| TCCACAACAACCACAACACG+CGG | 0.636009 | 6:+55202169 | None:intergenic |
| AAAGAGAAGGAAGAAGATGG+TGG | 0.646639 | 6:+55203640 | None:intergenic |
| TCGCCGGGTTTCAATGCCGG+CGG | 0.646747 | 6:-55203747 | MsG0680033030.01.T01:CDS |
| GCGCGCAAGGATGAGTATGG+CGG | 0.653133 | 6:-55201948 | MsG0680033030.01.T01:CDS |
| TGAGATGTTGAGGCTTCAAG+CGG | 0.656124 | 6:-55202395 | MsG0680033030.01.T01:CDS |
| TTGGATGGGAAGAACACTCA+CGG | 0.668699 | 6:-55201795 | MsG0680033030.01.T01:CDS |
| GGATCGTGTCGAAAGGTGTG+AGG | 0.671431 | 6:-55201984 | MsG0680033030.01.T01:CDS |
| GCGCAAGGATGAGTATGGCG+GGG | 0.685055 | 6:-55201946 | MsG0680033030.01.T01:CDS |
| TCACGCGCTAAAATCGCGTG+AGG | 0.692971 | 6:-55202494 | MsG0680033030.01.T01:CDS |
| GAGTCGCGACTTAATCGACT+CGG | 0.695155 | 6:+55201892 | None:intergenic |
| AGTGTGAAAGAAGAGAATGG+TGG | 0.698819 | 6:-55201830 | MsG0680033030.01.T01:CDS |
| TGATGATAGAGTGATAGCTG+TGG | 0.707351 | 6:-55202419 | MsG0680033030.01.T01:CDS |
| GATGATAGAGTGATAGCTGT+GGG | 0.725067 | 6:-55202418 | MsG0680033030.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAGGTCAAATAATAAACT+CGG | - | Chr6:55202305-55202324 | MsG0680033030.01.T01:CDS | 20.0% |
| !!! | AAATTTTGGTTAATTGTTGT+TGG | + | Chr6:55202264-55202283 | None:intergenic | 20.0% |
| !!! | TTCTGTAATGATGAAAATTT+TGG | + | Chr6:55202278-55202297 | None:intergenic | 20.0% |
| ! | AGACTTATCAGAATCTAATT+GGG | - | Chr6:55202514-55202533 | MsG0680033030.01.T01:CDS | 25.0% |
| ! | AGGTAATGAAAATGATAAAG+GGG | + | Chr6:55202181-55202200 | None:intergenic | 25.0% |
| ! | CAGGTAATGAAAATGATAAA+GGG | + | Chr6:55202182-55202201 | None:intergenic | 25.0% |
| ! | CATTACAGAAACTCTAATTT+AGG | - | Chr6:55202288-55202307 | MsG0680033030.01.T01:CDS | 25.0% |
| ! | TCAGGTAATGAAAATGATAA+AGG | + | Chr6:55202183-55202202 | None:intergenic | 25.0% |
| !!! | AAAATGATAAAGGGGTATTA+TGG | + | Chr6:55202173-55202192 | None:intergenic | 25.0% |
| !!! | AAATGATAAAGGGGTATTAT+GGG | + | Chr6:55202172-55202191 | None:intergenic | 25.0% |
| !!! | GAAATTGTGATTTTGTTGTT+GGG | + | Chr6:55202025-55202044 | None:intergenic | 25.0% |
| !!! | GTGTAGTTGATTTTGAAATT+GGG | - | Chr6:55202985-55203004 | MsG0680033030.01.T01:CDS | 25.0% |
| !!! | GTTGTTTTCTTCTATTTTAC+CGG | + | Chr6:55202379-55202398 | None:intergenic | 25.0% |
| !!! | TGAAATTGTGATTTTGTTGT+TGG | + | Chr6:55202026-55202045 | None:intergenic | 25.0% |
| !!! | TGTGTAGTTGATTTTGAAAT+TGG | - | Chr6:55202984-55203003 | MsG0680033030.01.T01:CDS | 25.0% |
| AATAATAAACTCGGTTCAAC+CGG | - | Chr6:55202314-55202333 | MsG0680033030.01.T01:CDS | 30.0% | |
| CTGTTATTACAACAAGTGAA+TGG | - | Chr6:55202487-55202506 | MsG0680033030.01.T01:CDS | 30.0% | |
| GAATCTGAATTCGATGAATT+CGG | - | Chr6:55202752-55202771 | MsG0680033030.01.T01:CDS | 30.0% | |
| GAGACTTATCAGAATCTAAT+TGG | - | Chr6:55202513-55202532 | MsG0680033030.01.T01:CDS | 30.0% | |
| GAGTCGAAAATTGTGTAATT+TGG | - | Chr6:55203505-55203524 | MsG0680033030.01.T01:CDS | 30.0% | |
| GTATAAGCTGAATAGAATTC+CGG | - | Chr6:55203274-55203293 | MsG0680033030.01.T01:CDS | 30.0% | |
| TCGAAAATTGTGTAATTTGG+TGG | - | Chr6:55203508-55203527 | MsG0680033030.01.T01:CDS | 30.0% | |
| !! | TAAGGGTATTGTTGTAATTC+AGG | + | Chr6:55202201-55202220 | None:intergenic | 30.0% |
| ATCCAACAAAATCGCTTCAT+CGG | - | Chr6:55201973-55201992 | MsG0680033030.01.T01:CDS | 35.0% | |
| ATTAAGTCGCGACTCAATAT+TGG | - | Chr6:55203644-55203663 | MsG0680033030.01.T01:CDS | 35.0% | |
| ATTCGATGAATTCGGATCAA+CGG | - | Chr6:55202760-55202779 | MsG0680033030.01.T01:CDS | 35.0% | |
| GAAGCTGCATTTGAAGAAAA+CGG | - | Chr6:55202951-55202970 | MsG0680033030.01.T01:CDS | 35.0% | |
| GAAGGATCTAGAAAAATTGG+AGG | + | Chr6:55201946-55201965 | None:intergenic | 35.0% | |
| GAGGAAGGATCTAGAAAAAT+TGG | + | Chr6:55201949-55201968 | None:intergenic | 35.0% | |
| TCTAGAAAAATTGGAGGAAG+TGG | + | Chr6:55201940-55201959 | None:intergenic | 35.0% | |
| TTACTCCTCTTTATGTGACT+CGG | - | Chr6:55203442-55203461 | MsG0680033030.01.T01:CDS | 35.0% | |
| TTATCAGAATCTAATTGGGC+CGG | - | Chr6:55202518-55202537 | MsG0680033030.01.T01:CDS | 35.0% | |
| TTTAGAGATCTTGAACAGGT+TGG | - | Chr6:55202719-55202738 | MsG0680033030.01.T01:CDS | 35.0% | |
| ! | GATAGTATTTTGTGATCTGC+CGG | + | Chr6:55201833-55201852 | None:intergenic | 35.0% |
| ! | GTTGTTGATGTTGTTGTTCT+TGG | + | Chr6:55202120-55202139 | None:intergenic | 35.0% |
| ! | TCAGTTGTTGTTGGAAAACT+CGG | - | Chr6:55202884-55202903 | MsG0680033030.01.T01:CDS | 35.0% |
| ! | TTCTTCTATTTTACCGGACA+TGG | + | Chr6:55202373-55202392 | None:intergenic | 35.0% |
| !! | GTTTAAGTTGAAGGTTGTTG+CGG | - | Chr6:55203070-55203089 | MsG0680033030.01.T01:CDS | 35.0% |
| !! | TGTTTTGAACAAACAGAAGC+AGG | + | Chr6:55202648-55202667 | None:intergenic | 35.0% |
| !! | TTGCTTTAGAGATCTTGAAC+AGG | - | Chr6:55202715-55202734 | MsG0680033030.01.T01:CDS | 35.0% |
| !! | TTGTTTCAAGGTTGGTTTCA+TGG | - | Chr6:55202908-55202927 | MsG0680033030.01.T01:CDS | 35.0% |
| !! | TTTCGAGTTTCGTGTTGTTT+CGG | - | Chr6:55203172-55203191 | MsG0680033030.01.T01:CDS | 35.0% |
| !!! | AGTTGATTTTGAAATTGGGC+AGG | - | Chr6:55202989-55203008 | MsG0680033030.01.T01:CDS | 35.0% |
| !!! | GTTGATTTTGAAATTGGGCA+GGG | - | Chr6:55202990-55203009 | MsG0680033030.01.T01:CDS | 35.0% |
| AAAGAGAAGGAAGAAGATGG+TGG | + | Chr6:55201891-55201910 | None:intergenic | 40.0% | |
| AGTGTGAAAGAAGAGAATGG+TGG | - | Chr6:55203698-55203717 | MsG0680033030.01.T01:CDS | 40.0% | |
| CTCAGTGTGAAAGAAGAGAA+TGG | - | Chr6:55203695-55203714 | MsG0680033030.01.T01:CDS | 40.0% | |
| CTCCTTTCTCTATCTTGACT+CGG | + | Chr6:55203484-55203503 | None:intergenic | 40.0% | |
| GAACACCTAAACGTTGTGTT+TGG | + | Chr6:55202227-55202246 | None:intergenic | 40.0% | |
| GATGATAGAGTGATAGCTGT+GGG | - | Chr6:55203110-55203129 | MsG0680033030.01.T01:CDS | 40.0% | |
| GGTAAAGAGAAGGAAGAAGA+TGG | + | Chr6:55201894-55201913 | None:intergenic | 40.0% | |
| GTCATCAACTTCTTCATCAG+CGG | - | Chr6:55202617-55202636 | MsG0680033030.01.T01:CDS | 40.0% | |
| GTGTGAAAGAAGAGAATGGT+GGG | - | Chr6:55203699-55203718 | MsG0680033030.01.T01:CDS | 40.0% | |
| GTTGAAATCGAGGATGAATC+CGG | - | Chr6:55202806-55202825 | MsG0680033030.01.T01:CDS | 40.0% | |
| TAACGACGAAGAAGGTGAAA+CGG | - | Chr6:55202455-55202474 | MsG0680033030.01.T01:CDS | 40.0% | |
| TACCACCAAACACAACGTTT+AGG | - | Chr6:55202219-55202238 | MsG0680033030.01.T01:CDS | 40.0% | |
| TATCAGAATCTAATTGGGCC+GGG | - | Chr6:55202519-55202538 | MsG0680033030.01.T01:CDS | 40.0% | |
| TCAACGGTTAGCGAATTTCA+TGG | - | Chr6:55202776-55202795 | MsG0680033030.01.T01:CDS | 40.0% | |
| TCACACTCTTCTACAAGAGT+TGG | - | Chr6:55202413-55202432 | MsG0680033030.01.T01:CDS | 40.0% | |
| TGAAAATCCACCTGTTGTTG+CGG | - | Chr6:55202830-55202849 | MsG0680033030.01.T01:CDS | 40.0% | |
| TGATGATAGAGTGATAGCTG+TGG | - | Chr6:55203109-55203128 | MsG0680033030.01.T01:CDS | 40.0% | |
| ! | AAACGTTGTGTTTGGTGGTA+AGG | + | Chr6:55202219-55202238 | None:intergenic | 40.0% |
| ! | AACGTTGTGTTTGGTGGTAA+GGG | + | Chr6:55202218-55202237 | None:intergenic | 40.0% |
| ! | AACTCGGTTTGTTTCAAGGT+TGG | - | Chr6:55202900-55202919 | MsG0680033030.01.T01:CDS | 40.0% |
| ! | GATGACGTTGTTGATGAAGT+TGG | + | Chr6:55202603-55202622 | None:intergenic | 40.0% |
| ! | GGAAAACTCGGTTTGTTTCA+AGG | - | Chr6:55202896-55202915 | MsG0680033030.01.T01:CDS | 40.0% |
| ! | TATTTTACCGGACATGGTCA+TGG | + | Chr6:55202367-55202386 | None:intergenic | 40.0% |
| ! | TGGTTGTTGTTGTTGGTGTT+GGG | + | Chr6:55201920-55201939 | None:intergenic | 40.0% |
| ! | TGTAATTTGGTGGCTTGTGA+AGG | - | Chr6:55203518-55203537 | MsG0680033030.01.T01:CDS | 40.0% |
| ! | TTCCGATGAAGCGATTTTGT+TGG | + | Chr6:55201978-55201997 | None:intergenic | 40.0% |
| ! | TTTTGTTGGATCTGTGAGGA+AGG | + | Chr6:55201964-55201983 | None:intergenic | 40.0% |
| !! | ACAACAGGTGGATTTTCAAC+CGG | + | Chr6:55202828-55202847 | None:intergenic | 40.0% |
| !! | GTTGTTGGTTGATGAAGAAG+AGG | + | Chr6:55202249-55202268 | None:intergenic | 40.0% |
| !! | TTTCTCTATCTTGACTCGGT+CGG | + | Chr6:55203480-55203499 | None:intergenic | 40.0% |
| !!! | TCGGCAACATTTTGACTCAT+TGG | + | Chr6:55203620-55203639 | None:intergenic | 40.0% |
| AACAATTCCGCAACAACAGG+TGG | + | Chr6:55202840-55202859 | None:intergenic | 45.0% | |
| ATCAGAATCTAATTGGGCCG+GGG | - | Chr6:55202520-55202539 | MsG0680033030.01.T01:CDS | 45.0% | |
| CAAGCGGAGAAGCTAAGAAT+TGG | - | Chr6:55203149-55203168 | MsG0680033030.01.T01:CDS | 45.0% | |
| CACCTAAACGTTGTGTTTGG+TGG | + | Chr6:55202224-55202243 | None:intergenic | 45.0% | |
| CCTGTTGTTGCGGAATTGTT+CGG | - | Chr6:55202840-55202859 | MsG0680033030.01.T01:CDS | 45.0% | |
| CTCGAAGATAACGACGAAGA+AGG | - | Chr6:55202447-55202466 | MsG0680033030.01.T01:CDS | 45.0% | |
| CTGTTGTTGCGGAATTGTTC+GGG | - | Chr6:55202841-55202860 | MsG0680033030.01.T01:CDS | 45.0% | |
| GACCGAGTCAAGATAGAGAA+AGG | - | Chr6:55203479-55203498 | MsG0680033030.01.T01:CDS | 45.0% | |
| GCTGCAAATGCGATTTCAGA+AGG | - | Chr6:55202681-55202700 | MsG0680033030.01.T01:CDS | 45.0% | |
| GGTTCAAACGGTTCAACAAC+CGG | - | Chr6:55202335-55202354 | MsG0680033030.01.T01:CDS | 45.0% | |
| GGTTGTTGAACCGTTTGAAC+CGG | + | Chr6:55202336-55202355 | None:intergenic | 45.0% | |
| TAACGAGTCGCGAGTTAACT+CGG | - | Chr6:55203670-55203689 | MsG0680033030.01.T01:CDS | 45.0% | |
| TCAAGCACAAGCTCAGAAAC+TGG | - | Chr6:55202566-55202585 | MsG0680033030.01.T01:CDS | 45.0% | |
| TCCGTTGACACACTTTCATC+CGG | + | Chr6:55203296-55203315 | None:intergenic | 45.0% | |
| TGAGATGTTGAGGCTTCAAG+CGG | - | Chr6:55203133-55203152 | MsG0680033030.01.T01:CDS | 45.0% | |
| TGTTGGGTACGGTAAAGAGA+AGG | + | Chr6:55201904-55201923 | None:intergenic | 45.0% | |
| TTGGATGGGAAGAACACTCA+CGG | - | Chr6:55203733-55203752 | MsG0680033030.01.T01:CDS | 45.0% | |
| ! | ATCCACGTGACACACTTTTG+CGG | - | Chr6:55203318-55203337 | MsG0680033030.01.T01:CDS | 45.0% |
| ! | ATGGTGGGATTTGCTTTGGT+TGG | - | Chr6:55203714-55203733 | MsG0680033030.01.T01:CDS | 45.0% |
| ! | ATTTGGTGGCTTGTGAAGGT+AGG | - | Chr6:55203522-55203541 | MsG0680033030.01.T01:CDS | 45.0% |
| ! | GAAGAAGATGGTGGTTGTTG+TGG | + | Chr6:55201882-55201901 | None:intergenic | 45.0% |
| ! | GAGAATGGTGGGATTTGCTT+TGG | - | Chr6:55203710-55203729 | MsG0680033030.01.T01:CDS | 45.0% |
| ! | GAGGAAGTGGTTGTTGTTGT+TGG | + | Chr6:55201927-55201946 | None:intergenic | 45.0% |
| ! | GCGATTTTGTTGGATCTGTG+AGG | + | Chr6:55201968-55201987 | None:intergenic | 45.0% |
| ! | GGGATTTGCTTTGGTTGGAT+GGG | - | Chr6:55203719-55203738 | MsG0680033030.01.T01:CDS | 45.0% |
| ! | GTGGTTGTTGTTGTTGGTGT+TGG | + | Chr6:55201921-55201940 | None:intergenic | 45.0% |
| ! | TAAGTTGAAGGTTGTTGCGG+TGG | - | Chr6:55203073-55203092 | MsG0680033030.01.T01:CDS | 45.0% |
| ! | TCCGGATGAAAGTGTGTCAA+CGG | - | Chr6:55203292-55203311 | MsG0680033030.01.T01:CDS | 45.0% |
| ! | TGAGTCGACTCAGTTGTTGT+TGG | - | Chr6:55202875-55202894 | MsG0680033030.01.T01:CDS | 45.0% |
| ! | TGGGATTTGCTTTGGTTGGA+TGG | - | Chr6:55203718-55203737 | MsG0680033030.01.T01:CDS | 45.0% |
| ! | TTTGGTGGCTTGTGAAGGTA+GGG | - | Chr6:55203523-55203542 | MsG0680033030.01.T01:CDS | 45.0% |
| !! | GAGTTGACTCGCGAGTTATT+GGG | - | Chr6:55203215-55203234 | MsG0680033030.01.T01:CDS | 45.0% |
| !! | GTCGAAAGGTGTGAGGTTTT+TGG | - | Chr6:55203551-55203570 | MsG0680033030.01.T01:CDS | 45.0% |
| !! | GTTGTTGTTGGTGTTGGGTA+CGG | + | Chr6:55201915-55201934 | None:intergenic | 45.0% |
| !! | TGAGTTGACTCGCGAGTTAT+TGG | - | Chr6:55203214-55203233 | MsG0680033030.01.T01:CDS | 45.0% |
| !! | TTGTAATACCGCGCCGTTTT+TGG | - | Chr6:55203394-55203413 | MsG0680033030.01.T01:CDS | 45.0% |
| !!! | GGTGTGAGGTTTTTGGCAAA+TGG | - | Chr6:55203558-55203577 | MsG0680033030.01.T01:CDS | 45.0% |
| AACGAGTCGCGAGTTAACTC+GGG | - | Chr6:55203671-55203690 | MsG0680033030.01.T01:CDS | 50.0% | |
| AAGGTAGGGATCGTGTCGAA+AGG | - | Chr6:55203537-55203556 | MsG0680033030.01.T01:CDS | 50.0% | |
| ATGGTGGTTGTTGTGGTGGT+TGG | + | Chr6:55201875-55201894 | None:intergenic | 50.0% | |
| CACTCACGGTTGCTTCTGTT+TGG | - | Chr6:55203747-55203766 | MsG0680033030.01.T01:CDS | 50.0% | |
| CCGAACAATTCCGCAACAAC+AGG | + | Chr6:55202843-55202862 | None:intergenic | 50.0% | |
| CTCGACCGAGTCACATAAAG+AGG | + | Chr6:55203450-55203469 | None:intergenic | 50.0% | |
| GACATGGTCATGGTTTGAGC+CGG | + | Chr6:55202357-55202376 | None:intergenic | 50.0% | |
| GAGTCGCGACTTAATCGACT+CGG | + | Chr6:55203639-55203658 | None:intergenic | 50.0% | |
| GCTCAAACCATGACCATGTC+CGG | - | Chr6:55202357-55202376 | MsG0680033030.01.T01:CDS | 50.0% | |
| TAGCTGTGGGTGAGATGTTG+AGG | - | Chr6:55203123-55203142 | MsG0680033030.01.T01:CDS | 50.0% | |
| TCCACAACAACCACAACACG+CGG | + | Chr6:55203362-55203381 | None:intergenic | 50.0% | |
| ! | CTCGGTTCAACCGGTTCAAA+CGG | - | Chr6:55202323-55202342 | MsG0680033030.01.T01:CDS | 50.0% |
| ! | GAAGATGGTGGTTGTTGTGG+TGG | + | Chr6:55201879-55201898 | None:intergenic | 50.0% |
| !! | CTCTTTATGTGACTCGGTCG+AGG | - | Chr6:55203448-55203467 | MsG0680033030.01.T01:CDS | 50.0% |
| !! | GCGTGAGGGGTTTAAGTTGA+AGG | - | Chr6:55203061-55203080 | MsG0680033030.01.T01:CDS | 50.0% |
| !! | TGGTGAGAGCGTTGAAATCG+AGG | - | Chr6:55202796-55202815 | MsG0680033030.01.T01:CDS | 50.0% |
| !! | TTTTTGGCAAATGGCGCGCA+AGG | - | Chr6:55203567-55203586 | MsG0680033030.01.T01:CDS | 50.0% |
| ATGGCGCGCAAGGATGAGTA+TGG | - | Chr6:55203577-55203596 | MsG0680033030.01.T01:CDS | 55.0% | |
| GTGGTTGTTGTGGTGGTTGG+TGG | + | Chr6:55201872-55201891 | None:intergenic | 55.0% | |
| GTTGAAGGTTGTTGCGGTGG+CGG | - | Chr6:55203076-55203095 | MsG0680033030.01.T01:CDS | 55.0% | |
| TCACGCGCTAAAATCGCGTG+AGG | - | Chr6:55203034-55203053 | MsG0680033030.01.T01:CDS | 55.0% | |
| TCATCGCCGGGTTTCAATGC+CGG | - | Chr6:55201778-55201797 | MsG0680033030.01.T01:CDS | 55.0% | |
| TCCGCAACACGCGCCAAAAA+CGG | + | Chr6:55203410-55203429 | None:intergenic | 55.0% | |
| ! | GGATCGTGTCGAAAGGTGTG+AGG | - | Chr6:55203544-55203563 | MsG0680033030.01.T01:CDS | 55.0% |
| ! | GGCTCGTCGGAGTTTTTCTC+CGG | - | Chr6:55201811-55201830 | MsG0680033030.01.T01:CDS | 55.0% |
| !! | GTTGTTGTGGTGGTTGGTGG+TGG | + | Chr6:55201869-55201888 | None:intergenic | 55.0% |
| AACACGCGCCAAAAACGGCG+CGG | + | Chr6:55203405-55203424 | None:intergenic | 60.0% | |
| AATCTAATTGGGCCGGGGCC+TGG | - | Chr6:55202525-55202544 | MsG0680033030.01.T01:CDS | 60.0% | |
| ATCTAATTGGGCCGGGGCCT+GGG | - | Chr6:55202526-55202545 | MsG0680033030.01.T01:CDS | 60.0% | |
| CGCGCAAGGATGAGTATGGC+GGG | - | Chr6:55203581-55203600 | MsG0680033030.01.T01:CDS | 60.0% | |
| CGCGCTAAAATCGCGTGAGG+CGG | - | Chr6:55203037-55203056 | MsG0680033030.01.T01:CDS | 60.0% | |
| GCCGCGTGTTGTGGTTGTTG+TGG | - | Chr6:55203358-55203377 | MsG0680033030.01.T01:CDS | 60.0% | |
| GCGCAAGGATGAGTATGGCG+GGG | - | Chr6:55203582-55203601 | MsG0680033030.01.T01:CDS | 60.0% | |
| GCGCGCAAGGATGAGTATGG+CGG | - | Chr6:55203580-55203599 | MsG0680033030.01.T01:CDS | 60.0% | |
| GCTTGTGCTTGAGCCTGACC+AGG | + | Chr6:55202558-55202577 | None:intergenic | 60.0% | |
| ! | CGCCGCAAAAGTGTGTCACG+TGG | + | Chr6:55203323-55203342 | None:intergenic | 60.0% |
| !! | GTTGTTGCGGTGGCGGAGAA+CGG | - | Chr6:55203083-55203102 | MsG0680033030.01.T01:CDS | 60.0% |
| !!! | GCCGTTTTTGGCGCGTGTTG+CGG | - | Chr6:55203406-55203425 | MsG0680033030.01.T01:CDS | 60.0% |
| GAAACTCGCGCCGCGTGTTG+TGG | - | Chr6:55203349-55203368 | MsG0680033030.01.T01:CDS | 65.0% | |
| GCGCGTGTTGCGGAGTCTTG+GGG | - | Chr6:55203416-55203435 | MsG0680033030.01.T01:CDS | 65.0% | |
| GGCGCGTGTTGCGGAGTCTT+GGG | - | Chr6:55203415-55203434 | MsG0680033030.01.T01:CDS | 65.0% | |
| TCGCCGGGTTTCAATGCCGG+CGG | - | Chr6:55201781-55201800 | MsG0680033030.01.T01:CDS | 65.0% | |
| TGGCGCGTGTTGCGGAGTCT+TGG | - | Chr6:55203414-55203433 | MsG0680033030.01.T01:CDS | 65.0% | |
| TTCAATGCCGGCGGTGGTGC+TGG | - | Chr6:55201790-55201809 | MsG0680033030.01.T01:CDS | 65.0% | |
| ! | CCACCGCCGGCATTGAAACC+CGG | + | Chr6:55201787-55201806 | None:intergenic | 65.0% |
| CCGGGTTTCAATGCCGGCGG+TGG | - | Chr6:55201784-55201803 | MsG0680033030.01.T01:CDS | 70.0% | |
| GCTTGAGCCTGACCAGGCCC+AGG | + | Chr6:55202552-55202571 | None:intergenic | 70.0% | |
| !! | GTTGCGGTGGCGGAGAACGG+CGG | - | Chr6:55203086-55203105 | MsG0680033030.01.T01:CDS | 70.0% |
| ATCGCGTGAGGCGGCGCGTG+AGG | - | Chr6:55203046-55203065 | MsG0680033030.01.T01:CDS | 75.0% | |
| CGACGAGCCAGCACCACCGC+CGG | + | Chr6:55201800-55201819 | None:intergenic | 75.0% | |
| TCGCGTGAGGCGGCGCGTGA+GGG | - | Chr6:55203047-55203066 | MsG0680033030.01.T01:CDS | 75.0% | |
| !! | CGGCGGTGGTGCTGGCTCGT+CGG | - | Chr6:55201798-55201817 | MsG0680033030.01.T01:CDS | 75.0% |
| ! | ATTGGGCCGGGGCCTGGGCC+TGG | - | Chr6:55202531-55202550 | MsG0680033030.01.T01:CDS | 80.0% |
| ! | CGCGTGAGGCGGCGCGTGAG+GGG | - | Chr6:55203048-55203067 | MsG0680033030.01.T01:CDS | 80.0% |
| ! | GCCTGACCAGGCCCAGGCCC+AGG | + | Chr6:55202546-55202565 | None:intergenic | 80.0% |
| ! | GCCTGGGCCTGGGCCTGGTC+AGG | - | Chr6:55202542-55202561 | MsG0680033030.01.T01:CDS | 80.0% |
| ! | TTGGGCCGGGGCCTGGGCCT+GGG | - | Chr6:55202532-55202551 | MsG0680033030.01.T01:CDS | 80.0% |
| ! | CCAGGCCCAGGCCCAGGCCC+CGG | + | Chr6:55202540-55202559 | None:intergenic | 85.0% |
| ! | CCGGGGCCTGGGCCTGGGCC+TGG | - | Chr6:55202537-55202556 | MsG0680033030.01.T01:CDS | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 55201775 | 55203775 | 55201775 | ID=MsG0680033030.01;Name=MsG0680033030.01 |
| Chr6 | mRNA | 55201775 | 55203775 | 55201775 | ID=MsG0680033030.01.T01;Parent=MsG0680033030.01;Name=MsG0680033030.01.T01;_AED=0.13;_eAED=0.13;_QI=0|-1|0|1|-1|1|1|0|666 |
| Chr6 | exon | 55201775 | 55203775 | 55201775 | ID=MsG0680033030.01.T01:exon:9037;Parent=MsG0680033030.01.T01 |
| Chr6 | CDS | 55201775 | 55203775 | 55201775 | ID=MsG0680033030.01.T01:cds;Parent=MsG0680033030.01.T01 |
| Gene Sequence |
| Protein sequence |
