AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680033716.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033716.01.T01 MTR_2g097020 79.941 673 114 5 22 679 1 667 0.0 1048
MsG0680033716.01.T01 MTR_2g095400 76.867 683 87 8 22 679 1 637 0.0 975
MsG0680033716.01.T01 MTR_4g046643 74.030 670 130 5 22 663 1 654 0.0 937
MsG0680033716.01.T01 MTR_2g097010 73.939 683 148 5 22 679 1 678 0.0 927
MsG0680033716.01.T01 MTR_2g097000 68.217 387 81 5 331 679 7 389 1.40e-167 485
MsG0680033716.01.T01 MTR_4g126200 76.046 263 49 3 419 679 3 253 7.11e-133 392
MsG0680033716.01.T01 MTR_3g067815 36.819 679 339 15 31 674 13 636 2.91e-130 399
MsG0680033716.01.T01 MTR_5g079940 36.418 670 350 16 42 677 492 1119 4.99e-121 387
MsG0680033716.01.T01 MTR_4g006760 33.383 671 341 15 42 675 24 625 9.17e-104 329
MsG0680033716.01.T01 MTR_4g131350 34.763 676 330 19 42 677 77 681 2.72e-103 330
MsG0680033716.01.T01 MTR_4g125920 34.324 673 337 19 42 677 24 628 3.12e-101 323
MsG0680033716.01.T01 MTR_3g067855 45.923 233 107 6 446 677 123 337 1.17e-49 177
MsG0680033716.01.T01 MTR_3g067845 37.500 264 144 6 416 677 6 250 7.82e-36 137
MsG0680033716.01.T01 MTR_8g446460 54.015 137 56 4 30 163 107 239 7.55e-34 132
MsG0680033716.01.T01 MTR_4g126180 69.149 94 29 0 328 421 3 96 1.48e-32 122
MsG0680033716.01.T01 MTR_4g131310 24.490 441 237 12 42 463 24 387 6.94e-27 114
MsG0680033716.01.T01 MTR_4g131310 60.938 64 25 0 604 667 391 454 4.62e-18 87.8
MsG0680033716.01.T01 MTR_2g066850 60.920 87 29 3 21 105 64 147 1.86e-21 100
MsG0680033716.01.T01 MTR_2g075630 62.500 72 24 2 16 87 60 128 6.46e-20 90.5
MsG0680033716.01.T01 MTR_3g067825 45.745 94 46 2 588 677 10 102 5.85e-17 77.8
MsG0680033716.01.T01 MTR_8g063010 55.696 79 30 3 39 117 57 130 4.67e-16 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033716.01.T01 AT1G13790 44.712 539 251 8 159 670 208 726 1.08e-131 405
MsG0680033716.01.T01 AT1G13790 44.712 539 251 8 159 670 208 726 1.08e-131 405
MsG0680033716.01.T01 AT3G48670 34.139 662 344 13 53 677 38 644 6.40e-103 328
MsG0680033716.01.T01 AT3G48670 34.139 662 344 13 53 677 38 644 6.40e-103 328
MsG0680033716.01.T01 AT3G48670 34.139 662 344 13 53 677 38 644 6.40e-103 328
MsG0680033716.01.T01 AT3G12550 33.626 684 358 14 37 678 8 637 2.68e-102 326
MsG0680033716.01.T01 AT3G12550 33.577 685 358 15 37 678 8 638 1.25e-100 322
MsG0680033716.01.T01 AT3G12550 33.577 685 358 15 37 678 8 638 1.25e-100 322
MsG0680033716.01.T01 AT3G12550 33.577 685 358 15 37 678 8 638 1.25e-100 322
MsG0680033716.01.T01 AT1G15910 32.258 682 357 17 37 678 18 634 8.40e-92 298
MsG0680033716.01.T01 AT5G59390 35.932 526 290 10 170 668 34 539 1.41e-87 285
MsG0680033716.01.T01 AT5G59390 35.932 526 290 10 170 668 34 539 1.41e-87 285
MsG0680033716.01.T01 AT5G59390 35.932 526 290 10 170 668 34 539 1.41e-87 285
MsG0680033716.01.T01 AT1G80790 32.448 678 361 13 36 678 19 634 9.27e-86 282
MsG0680033716.01.T01 AT1G80790 32.448 678 361 13 36 678 19 634 9.27e-86 282
MsG0680033716.01.T01 AT4G00380 31.222 679 370 15 36 678 18 635 2.10e-85 281
MsG0680033716.01.T01 AT4G00380 31.222 679 370 15 36 678 18 635 2.10e-85 281
MsG0680033716.01.T01 AT5G59390 35.460 533 288 11 170 668 34 544 2.12e-85 279
MsG0680033716.01.T01 AT5G59390 35.460 533 288 11 170 668 34 544 2.12e-85 279
MsG0680033716.01.T01 AT4G00380 34.438 543 298 10 169 678 90 607 8.63e-85 279
MsG0680033716.01.T01 AT4G01180 34.875 562 289 14 151 668 11 539 1.89e-81 269
MsG0680033716.01.T01 AT3G12550 31.167 600 317 14 37 594 8 553 9.76e-70 238
MsG0680033716.01.T01 AT4G01780 35.666 443 199 10 237 677 111 469 4.22e-64 220
MsG0680033716.01.T01 AT3G29375 41.981 212 99 4 467 677 38 226 1.31e-42 154
MsG0680033716.01.T01 AT1G80790 27.511 458 251 10 36 458 19 430 5.69e-41 156
MsG0680033716.01.T01 AT3G29375 41.981 212 99 4 467 677 161 349 1.61e-40 152
MsG0680033716.01.T01 AT3G29375 36.719 128 60 2 467 594 38 144 2.25e-15 75.1
MsG0680033716.01.T01 AT2G16490 42.105 76 44 0 603 678 74 149 4.74e-14 71.2

Find 142 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTTGCAATTGTTGAATT+TGG 0.094302 6:+72231322 MsG0680033716.01.T01:CDS
ATTTCCATTGCTTAATTAAA+TGG 0.098910 6:-72234074 None:intergenic
GGGGATTTGAAAACGGTTTC+TGG 0.111458 6:+72231529 MsG0680033716.01.T01:CDS
TTCATTGGTCTTCAGCTTTA+AGG 0.118185 6:-72231608 None:intergenic
CACGAGTATATTCTAAATTT+TGG 0.119844 6:-72230718 None:intergenic
ACTTGATATTAAGCCATTTC+TGG 0.218339 6:+72233423 MsG0680033716.01.T01:CDS
TGTTGTCTGTTTCAATTCAT+TGG 0.248854 6:-72231623 None:intergenic
TTCGTTGGTTAATGTGAATT+TGG 0.249953 6:+72231111 MsG0680033716.01.T01:CDS
GGCAAACACCTCCAGGAAAA+AGG 0.252537 6:+72231508 MsG0680033716.01.T01:CDS
TAAGCAATGGAAATCAAATA+AGG 0.267301 6:+72234083 MsG0680033716.01.T01:CDS
GAGCGAGGAGATAGACTATT+TGG 0.286214 6:+72231442 MsG0680033716.01.T01:CDS
TAGCTTGAGTGTTGTTCTTT+GGG 0.290615 6:-72233375 None:intergenic
GATGCTTGAACATTTCAATA+AGG 0.290672 6:+72231702 MsG0680033716.01.T01:CDS
ATAGCTTGAGTGTTGTTCTT+TGG 0.293353 6:-72233376 None:intergenic
TAGTCCTTGTTGTAGCAAAA+TGG 0.309878 6:-72230839 None:intergenic
CTCTTAGCTGCTTCCAGAAA+TGG 0.310177 6:-72233436 None:intergenic
TTTGCTCCATCACTTTCCTT+AGG 0.315993 6:-72231672 None:intergenic
ACAGCTGAAAGGAGCTTTCC+AGG 0.321504 6:+72232658 MsG0680033716.01.T01:CDS
AATTCCAGAGTTCCGGTATT+GGG 0.334900 6:-72234011 None:intergenic
GGAAAAGGAAGAGGAATTAG+AGG 0.352913 6:+72232751 MsG0680033716.01.T01:CDS
TCAACAAACACTGGTTGTTC+AGG 0.353904 6:+72232787 MsG0680033716.01.T01:CDS
TCTTTAAAATTCCAGAGTTC+CGG 0.355321 6:-72234018 None:intergenic
CTGTGGTAAGCGGGATTACT+TGG 0.359149 6:+72231405 MsG0680033716.01.T01:CDS
GCAGGCTGAACGCAAGTATC+AGG 0.361989 6:+72231938 MsG0680033716.01.T01:CDS
ATATACTCGTGAATCTGATT+TGG 0.366588 6:+72230730 MsG0680033716.01.T01:CDS
TTGCTCCATCACTTTCCTTA+GGG 0.374227 6:-72231671 None:intergenic
GAAGGATCCAACGAAAATTA+AGG 0.375245 6:+72231231 MsG0680033716.01.T01:CDS
TCGTTGGTTAATGTGAATTT+GGG 0.376063 6:+72231112 MsG0680033716.01.T01:CDS
CTCTAATGTGATTCATTACC+TGG 0.385645 6:-72232676 None:intergenic
AAAGTTTGAAGGATGAGTTC+GGG 0.387895 6:+72233920 MsG0680033716.01.T01:CDS
AAACAAGCTTGTCTCTGGTT+TGG 0.392657 6:+72231579 MsG0680033716.01.T01:CDS
ATGCTTGAACATTTCAATAA+GGG 0.393919 6:+72231703 MsG0680033716.01.T01:CDS
GAAAAGAAGCCGAGGACAAT+AGG 0.397047 6:+72231551 MsG0680033716.01.T01:CDS
TTTCCATTGCTTAATTAAAT+GGG 0.397793 6:-72234073 None:intergenic
TGCAAAACAAGCATTGGAAT+TGG 0.398690 6:+72232628 MsG0680033716.01.T01:CDS
GTATCAGGAGAAAGTATCTA+AGG 0.410358 6:+72231953 MsG0680033716.01.T01:CDS
AAGCTATAATTTCTGTGAAA+AGG 0.426145 6:+72233392 MsG0680033716.01.T01:CDS
AAAAGTTTGAAGGATGAGTT+CGG 0.426423 6:+72233919 MsG0680033716.01.T01:CDS
CAGAATGGAGCTGCAGGAAA+AGG 0.433632 6:+72232736 MsG0680033716.01.T01:CDS
AAATTCCAGAGTTCCGGTAT+TGG 0.433634 6:-72234012 None:intergenic
ATTCTAGCTCGAACAGACTT+TGG 0.436180 6:+72234168 MsG0680033716.01.T01:three_prime_UTR
AAAGCAAACAAGCTTGTCTC+TGG 0.443077 6:+72231574 MsG0680033716.01.T01:CDS
AGGAGGAGCTGATTATGAAA+GGG 0.447751 6:+72231251 MsG0680033716.01.T01:CDS
ACTGCACTGTGGAACCTTCA+TGG 0.449566 6:+72231292 MsG0680033716.01.T01:CDS
TGAAAAGCTGAAAAGTTTGA+AGG 0.453713 6:+72233909 MsG0680033716.01.T01:CDS
TTGCATCCAGTCCTCTCTCC+AGG 0.453963 6:-72232610 None:intergenic
GTTTGCTTTCCTATTGTCCT+CGG 0.455452 6:-72231560 None:intergenic
GACTTATCATTACGAACAAC+AGG 0.456419 6:-72231004 None:intergenic
CTTCTTCTCAAAATATAGCT+TGG 0.458126 6:-72232078 None:intergenic
AGTCCTTGTTGTAGCAAAAT+GGG 0.460972 6:-72230838 None:intergenic
AAGCAATGGAAATCAAATAA+GGG 0.461528 6:+72234084 MsG0680033716.01.T01:CDS
ATTGTTTGTTCATAGTGGAT+TGG 0.465199 6:+72233349 MsG0680033716.01.T01:intron
TTACTTGGGTTTACGAAAGC+AGG 0.468698 6:+72231420 MsG0680033716.01.T01:CDS
AACTTATTGATGCTTCGTTT+CGG 0.468743 6:+72234113 MsG0680033716.01.T01:exon
CCAGTCTGGAGCTGGAAGTT+CGG 0.471555 6:+72231988 MsG0680033716.01.T01:CDS
AGCAATCAGAATGGAGCTGC+AGG 0.472823 6:+72232730 MsG0680033716.01.T01:CDS
TGAAAATGCCAGTCTGGAGC+TGG 0.474792 6:+72231980 MsG0680033716.01.T01:CDS
GGATCATGAAAATGCCAGTC+TGG 0.478798 6:+72231974 MsG0680033716.01.T01:CDS
CAAACTTATATCCCGTGAAA+AGG 0.480262 6:+72232016 MsG0680033716.01.T01:CDS
TATAATTTCTGTGAAAAGGA+TGG 0.482190 6:+72233396 MsG0680033716.01.T01:CDS
ACTTTGAACGGATGCCAACT+TGG 0.493862 6:-72233577 None:intergenic
TATGATATCAAGGATATAGT+TGG 0.497256 6:+72231487 MsG0680033716.01.T01:CDS
AGGAAGGAAGGCTTCGTTGA+AGG 0.499099 6:+72234041 MsG0680033716.01.T01:CDS
GAAGGATGAGTTCGGGGATG+AGG 0.499124 6:+72233927 MsG0680033716.01.T01:CDS
AAGGAGGAGCTGATTATGAA+AGG 0.500167 6:+72231250 MsG0680033716.01.T01:CDS
AGCAGAGCACTGTGGTAAGC+GGG 0.500435 6:+72231396 MsG0680033716.01.T01:CDS
GAATGTTGCTAAGGGTTCGT+TGG 0.504072 6:+72231096 MsG0680033716.01.T01:CDS
CACAGTGCAGTAACTTTCAT+CGG 0.504310 6:-72231280 None:intergenic
CCGAACTTCCAGCTCCAGAC+TGG 0.505605 6:-72231988 None:intergenic
ACTTGTTAAGAATGTTGCTA+AGG 0.507417 6:+72231087 MsG0680033716.01.T01:CDS
TCCAAATTCAACAATTGCAA+AGG 0.510603 6:-72231323 None:intergenic
TTATCAGTTACAACTTTGAA+CGG 0.511127 6:-72233589 None:intergenic
TATAGTTGGCAAACACCTCC+AGG 0.512464 6:+72231501 MsG0680033716.01.T01:CDS
AGCTACGGTGATGTTAAAGT+TGG 0.513136 6:+72230968 MsG0680033716.01.T01:CDS
GGTATTGGGTACCGACCACT+AGG 0.514631 6:-72233997 None:intergenic
AGATAGACTATTTGGTTGGA+TGG 0.515691 6:+72231450 MsG0680033716.01.T01:CDS
TAACTCAATCTTATTGCCAA+TGG 0.516082 6:+72234193 MsG0680033716.01.T01:three_prime_UTR
ATGAGTTGTTTGTATATCCA+TGG 0.518192 6:+72231149 MsG0680033716.01.T01:CDS
CCAAATTCAACAATTGCAAA+GGG 0.521084 6:-72231322 None:intergenic
TTTCCCATTTAATTAAGCAA+TGG 0.524848 6:+72234070 MsG0680033716.01.T01:CDS
ACTGGATGCAAAACAAGCAT+TGG 0.525557 6:+72232622 MsG0680033716.01.T01:CDS
ACCACCGAGGCGCCAACCAT+TGG 0.526681 6:-72234209 None:intergenic
ACAATGCTATGAAGTTAGAA+AGG 0.526734 6:+72231365 MsG0680033716.01.T01:CDS
TTGGATGTTGCAGAAAGAAA+AGG 0.529965 6:+72232562 MsG0680033716.01.T01:intron
CTTGTTAAGAATGTTGCTAA+GGG 0.530987 6:+72231088 MsG0680033716.01.T01:CDS
GGTACCCAATACCGGAACTC+TGG 0.532850 6:+72234007 MsG0680033716.01.T01:CDS
GAGGAGATAGACTATTTGGT+TGG 0.535517 6:+72231446 MsG0680033716.01.T01:CDS
TCGTGATGACTATGATATCA+AGG 0.536854 6:+72231477 MsG0680033716.01.T01:CDS
AAAGTTGTAACTGATAAAGA+AGG 0.540435 6:+72233595 MsG0680033716.01.T01:CDS
TGTGGTAAGCGGGATTACTT+GGG 0.540703 6:+72231406 MsG0680033716.01.T01:CDS
AGAAATCAGCAAGATGCGGC+AGG 0.543540 6:+72231920 MsG0680033716.01.T01:intron
ATAATTTCTGTGAAAAGGAT+GGG 0.545043 6:+72233397 MsG0680033716.01.T01:CDS
TCAATCTTATTGCCAATGGT+TGG 0.547840 6:+72234197 MsG0680033716.01.T01:three_prime_UTR
TCATGACCTGGAGAGAGGAC+TGG 0.550277 6:+72232604 MsG0680033716.01.T01:CDS
GAGACACACGTGCACAATTG+TGG 0.551386 6:+72230883 MsG0680033716.01.T01:CDS
AATCGAGTGGTGCTCGAAGT+GGG 0.554131 6:+72233537 MsG0680033716.01.T01:CDS
CAAAGGGTAATTGTCCATGA+AGG 0.557538 6:-72231306 None:intergenic
TAGTGGTCGGTACCCAATAC+CGG 0.557758 6:+72233999 MsG0680033716.01.T01:CDS
AAAATTGGAAGCAATCAGAA+TGG 0.559788 6:+72232721 MsG0680033716.01.T01:CDS
TTTCTAACTTCATAGCATTG+TGG 0.565243 6:-72231363 None:intergenic
AAGGAAGGCTTCGTTGAAGG+AGG 0.570974 6:+72234044 MsG0680033716.01.T01:CDS
GGAGCTGCAGGAAAAGGAAG+AGG 0.576364 6:+72232742 MsG0680033716.01.T01:CDS
ATGAGGCGAAAGTGTCCCTA+AGG 0.584555 6:+72231656 MsG0680033716.01.T01:CDS
GAAAAGGAAGAGGAATTAGA+GGG 0.585875 6:+72232752 MsG0680033716.01.T01:CDS
AATTAGAAAGTATGTTGCGA+AGG 0.591005 6:+72231213 MsG0680033716.01.T01:CDS
AAAATTCATGACCTGGAGAG+AGG 0.591924 6:+72232599 MsG0680033716.01.T01:CDS
TCACTAGCAGTACTAACAGC+AGG 0.592415 6:-72231028 None:intergenic
CTTGAAAGATGATTACTACA+AGG 0.592695 6:+72230781 MsG0680033716.01.T01:CDS
AGTGTCCCTAAGGAAAGTGA+TGG 0.598158 6:+72231666 MsG0680033716.01.T01:CDS
AGACACACGTGCACAATTGT+GGG 0.601497 6:+72230884 MsG0680033716.01.T01:CDS
CAATCGAGTGGTGCTCGAAG+TGG 0.602767 6:+72233536 MsG0680033716.01.T01:CDS
TGTTGAATTTGGACGACAGT+GGG 0.605384 6:+72231333 MsG0680033716.01.T01:CDS
TGCAGTAGCTACAACTCTGA+AGG 0.607260 6:+72233957 MsG0680033716.01.T01:CDS
TCACAAGAAAATTCATGACC+TGG 0.607531 6:+72232592 MsG0680033716.01.T01:CDS
ACTGTGTTAAAGATCCAAGT+TGG 0.608444 6:+72233563 MsG0680033716.01.T01:CDS
GACTAAGAGAAAACTTTCAG+AGG 0.610089 6:+72233498 MsG0680033716.01.T01:CDS
TTGGAGATTGAACAGCTGAA+AGG 0.614196 6:+72232647 MsG0680033716.01.T01:CDS
GGAAGATCTTCAACAAACAC+TGG 0.622373 6:+72232778 MsG0680033716.01.T01:CDS
TAGCAGAGCACTGTGGTAAG+CGG 0.623837 6:+72231395 MsG0680033716.01.T01:CDS
AGAAAATAAAAGCAATCGAG+TGG 0.627831 6:+72233524 MsG0680033716.01.T01:CDS
GACAACAAGCAAACATCATG+AGG 0.628408 6:+72231639 MsG0680033716.01.T01:CDS
GGTTTACGAAAGCAGGAGCG+AGG 0.630260 6:+72231427 MsG0680033716.01.T01:CDS
GTCTGGAGCTGGAAGTTCGG+AGG 0.636966 6:+72231991 MsG0680033716.01.T01:CDS
AGGAAGGCTTCGTTGAAGGA+GGG 0.636979 6:+72234045 MsG0680033716.01.T01:CDS
GAATTTGGACGACAGTGGGA+TGG 0.637082 6:+72231337 MsG0680033716.01.T01:CDS
GTTGTTTGTATATCCATGGA+TGG 0.639733 6:+72231153 MsG0680033716.01.T01:CDS
AAGTTTGAAGGATGAGTTCG+GGG 0.641151 6:+72233921 MsG0680033716.01.T01:CDS
AAAGGAAGAGGAATTAGAGG+GGG 0.645418 6:+72232754 MsG0680033716.01.T01:CDS
GAAATGTATATTGAAAGCTA+CGG 0.650258 6:+72230953 MsG0680033716.01.T01:CDS
TGATAAAGAAGGAAACTCCA+AGG 0.654804 6:+72233606 MsG0680033716.01.T01:CDS
AAAAGGAAGAGGAATTAGAG+GGG 0.657317 6:+72232753 MsG0680033716.01.T01:CDS
TTGTTGAATTTGGACGACAG+TGG 0.663290 6:+72231332 MsG0680033716.01.T01:CDS
TAAGGTTGATCAGTCAAATG+TGG 0.663566 6:+72228980 MsG0680033716.01.T01:CDS
ATGAGTACAACCCTAGTGGT+CGG 0.671880 6:+72233986 MsG0680033716.01.T01:CDS
GGTTTCTGGAAAAGAAGCCG+AGG 0.676719 6:+72231543 MsG0680033716.01.T01:CDS
CATTAGAAATCAGCAAGATG+CGG 0.680318 6:+72231916 MsG0680033716.01.T01:intron
GGATCCAACGAAAATTAAGG+AGG 0.684524 6:+72231234 MsG0680033716.01.T01:CDS
TGTGGGTGACTTGCATGAGA+CGG 0.697226 6:+72230901 MsG0680033716.01.T01:CDS
CGATGAAAGTTACTGCACTG+TGG 0.699936 6:+72231281 MsG0680033716.01.T01:CDS
TTAAATGAGTACAACCCTAG+TGG 0.705810 6:+72233982 MsG0680033716.01.T01:CDS
GTATTGGGTACCGACCACTA+GGG 0.725721 6:-72233996 None:intergenic
AGCTTTCTAGCAGAGCACTG+TGG 0.773857 6:+72231388 MsG0680033716.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGTTATTAAAAAATAAG+AGG - Chr6:72232357-72232376 None:intergenic 10.0%
!! TAAGTTATTAAAAAATAAGA+GGG - Chr6:72232356-72232375 None:intergenic 10.0%
!!! TATGATATTTTAATATTTCA+TGG + Chr6:72231868-72231887 MsG0680033716.01.T01:intron 10.0%
!! AATTAAAAACTGTAGATAAT+AGG - Chr6:72232502-72232521 None:intergenic 15.0%
!! ATTAAAACATTAAAAGCAAT+TGG - Chr6:72229701-72229720 None:intergenic 15.0%
!! TAATTAGAAAGAATAGTAAT+TGG + Chr6:72233747-72233766 MsG0680033716.01.T01:intron 15.0%
!!! ATAATTTATACTGATTATTG+TGG + Chr6:72230452-72230471 MsG0680033716.01.T01:intron 15.0%
!!! ATTTTGAAAAATATTGTTAC+TGG + Chr6:72231178-72231197 MsG0680033716.01.T01:CDS 15.0%
!!! TACTAATATATCTATGATTT+TGG + Chr6:72231803-72231822 MsG0680033716.01.T01:intron 15.0%
!!! TTTACATTTTATGTGAAAAT+TGG + Chr6:72233256-72233275 MsG0680033716.01.T01:intron 15.0%
!!! TTTTTTTTTCTTTTTGTGAT+TGG - Chr6:72229944-72229963 None:intergenic 15.0%
!! AAATTGAATTGATCCAATAT+TGG + Chr6:72231739-72231758 MsG0680033716.01.T01:intron 20.0%
!! ATAAAATCAACTAGAAAGAA+AGG - Chr6:72230284-72230303 None:intergenic 20.0%
!! ATATGTTAGATATATTTCAC+AGG + Chr6:72233867-72233886 MsG0680033716.01.T01:intron 20.0%
!! ATTTCCATTGCTTAATTAAA+TGG - Chr6:72234077-72234096 None:intergenic 20.0%
!! ATTTCTTCTAGATATTTCTT+AGG + Chr6:72229990-72230009 MsG0680033716.01.T01:intron 20.0%
!! TAAAATCAACTAGAAAGAAA+GGG - Chr6:72230283-72230302 None:intergenic 20.0%
!! TATTAAAAAATAAGAGGGAT+TGG - Chr6:72232351-72232370 None:intergenic 20.0%
!! TTAATAAAAGGATGTTGATA+GGG + Chr6:72229122-72229141 MsG0680033716.01.T01:intron 20.0%
!! TTTAATAAAAGGATGTTGAT+AGG + Chr6:72229121-72229140 MsG0680033716.01.T01:intron 20.0%
!! TTTCCATTGCTTAATTAAAT+GGG - Chr6:72234076-72234095 None:intergenic 20.0%
!! TTTCTTCTAGATATTTCTTA+GGG + Chr6:72229991-72230010 MsG0680033716.01.T01:intron 20.0%
!!! AAAATTTGATGATGATATCT+TGG + Chr6:72229019-72229038 MsG0680033716.01.T01:intron 20.0%
!!! AAACATTCAAATCATGTTTT+TGG + Chr6:72233016-72233035 MsG0680033716.01.T01:intron 20.0%
!!! AAATTTGATGATGATATCTT+GGG + Chr6:72229020-72229039 MsG0680033716.01.T01:intron 20.0%
!!! AAGTTTATTTTCTGGTTATA+AGG + Chr6:72228962-72228981 MsG0680033716.01.T01:CDS 20.0%
!!! AGCTTATTTTTAGTTATTGT+TGG + Chr6:72230238-72230257 MsG0680033716.01.T01:intron 20.0%
!!! ATTTTATGCAATTCATAGAA+GGG - Chr6:72233837-72233856 None:intergenic 20.0%
!!! CAACATACTTTCTAATTTTT+GGG - Chr6:72231210-72231229 None:intergenic 20.0%
!!! TAAATTGGCTTCTTTAAAAA+TGG + Chr6:72232252-72232271 MsG0680033716.01.T01:intron 20.0%
!!! TATTTTATGCAATTCATAGA+AGG - Chr6:72233838-72233857 None:intergenic 20.0%
!!! TGAAGGTGAATTTTAATAAA+AGG + Chr6:72229110-72229129 MsG0680033716.01.T01:intron 20.0%
!!! TTCATAATGTTTCACATTTT+AGG + Chr6:72230348-72230367 MsG0680033716.01.T01:intron 20.0%
!!! TTCTATACTTTACTTTTTCA+TGG + Chr6:72230613-72230632 MsG0680033716.01.T01:intron 20.0%
! AAAGTTGTAACTGATAAAGA+AGG + Chr6:72233595-72233614 MsG0680033716.01.T01:CDS 25.0%
! AAGCAATGGAAATCAAATAA+GGG + Chr6:72234084-72234103 MsG0680033716.01.T01:CDS 25.0%
! AAGCTATAATTTCTGTGAAA+AGG + Chr6:72233392-72233411 MsG0680033716.01.T01:CDS 25.0%
! AAGTTCTATTAAGACAATGT+TGG + Chr6:72233683-72233702 MsG0680033716.01.T01:intron 25.0%
! AATAAGCTCAAAGTAAAATG+TGG - Chr6:72230226-72230245 None:intergenic 25.0%
! AATGAGAAAAAAGAATGAGA+GGG - Chr6:72229845-72229864 None:intergenic 25.0%
! AATTTACAGGAGAACTAAAT+TGG + Chr6:72232237-72232256 MsG0680033716.01.T01:intron 25.0%
! ATAATTTCTGTGAAAAGGAT+GGG + Chr6:72233397-72233416 MsG0680033716.01.T01:CDS 25.0%
! ATGCTTGAACATTTCAATAA+GGG + Chr6:72231703-72231722 MsG0680033716.01.T01:CDS 25.0%
! ATTCCTTAGATATAGAAACT+AGG - Chr6:72233124-72233143 None:intergenic 25.0%
! ATTTCATTGTTTGTTCATAG+TGG + Chr6:72233344-72233363 MsG0680033716.01.T01:intron 25.0%
! CACAAATAGAAAGAAGAAAA+TGG - Chr6:72229887-72229906 None:intergenic 25.0%
! GAAATGTATATTGAAAGCTA+CGG + Chr6:72230953-72230972 MsG0680033716.01.T01:CDS 25.0%
! GATTTGAATGTTTGCAAAAT+AGG - Chr6:72233009-72233028 None:intergenic 25.0%
! GTTCATGTTATTGTTGTATT+TGG - Chr6:72229451-72229470 None:intergenic 25.0%
! GTTGTATTAGACTATTAACA+AGG - Chr6:72229368-72229387 None:intergenic 25.0%
! TAAGCAATGGAAATCAAATA+AGG + Chr6:72234083-72234102 MsG0680033716.01.T01:CDS 25.0%
! TATAATTTCTGTGAAAAGGA+TGG + Chr6:72233396-72233415 MsG0680033716.01.T01:CDS 25.0%
! TATGATATCAAGGATATAGT+TGG + Chr6:72231487-72231506 MsG0680033716.01.T01:CDS 25.0%
! TATGTGAAAATTGGTAGAAT+CGG + Chr6:72233265-72233284 MsG0680033716.01.T01:intron 25.0%
! TCGTGAAAAAATGATGTATT+TGG + Chr6:72232446-72232465 MsG0680033716.01.T01:intron 25.0%
! TCTAGATGAGAAGAAAAAAT+TGG + Chr6:72232706-72232725 MsG0680033716.01.T01:CDS 25.0%
! TTATCAGTTACAACTTTGAA+CGG - Chr6:72233592-72233611 None:intergenic 25.0%
! TTTCCCATTTAATTAAGCAA+TGG + Chr6:72234070-72234089 MsG0680033716.01.T01:CDS 25.0%
! TTTGAAAGTGATCAATTTAC+AGG + Chr6:72232224-72232243 MsG0680033716.01.T01:intron 25.0%
!! AACCAATCTTTTACAAAGTA+GGG + Chr6:72232873-72232892 MsG0680033716.01.T01:intron 25.0%
!! ACTAATCTCATTTTCTTTGA+TGG + Chr6:72229076-72229095 MsG0680033716.01.T01:intron 25.0%
!! ACTTTGTAAAAGATTGGTTA+CGG - Chr6:72232872-72232891 None:intergenic 25.0%
!! ATGTATATACTTGAGTTTTG+AGG + Chr6:72232529-72232548 MsG0680033716.01.T01:intron 25.0%
!! ATTTCACAGGAAATTTTAGA+CGG + Chr6:72233880-72233899 MsG0680033716.01.T01:intron 25.0%
!! CACGAGTATATTCTAAATTT+TGG - Chr6:72230721-72230740 None:intergenic 25.0%
!! CATTTTCTTTGATGGAATTT+TGG + Chr6:72229084-72229103 MsG0680033716.01.T01:intron 25.0%
!! GCAACATACTTTCTAATTTT+TGG - Chr6:72231211-72231230 None:intergenic 25.0%
!! TAACCAATCTTTTACAAAGT+AGG + Chr6:72232872-72232891 MsG0680033716.01.T01:intron 25.0%
!! TAATCTTGGTTGAACATTTT+TGG + Chr6:72229156-72229175 MsG0680033716.01.T01:intron 25.0%
!! TTTTTAATGTGCTCAATCAA+CGG - Chr6:72229285-72229304 None:intergenic 25.0%
!!! AATTTGATGATGATATCTTG+GGG + Chr6:72229021-72229040 MsG0680033716.01.T01:intron 25.0%
!!! ATACACTTATTAGCTTTTTG+CGG - Chr6:72232844-72232863 None:intergenic 25.0%
!!! ATTCCTTCTCATTGATTTAA+AGG + Chr6:72231763-72231782 MsG0680033716.01.T01:intron 25.0%
!!! TTCACATTTTAGGTAAGAAT+CGG + Chr6:72230358-72230377 MsG0680033716.01.T01:intron 25.0%
AAAAGTTTGAAGGATGAGTT+CGG + Chr6:72233919-72233938 MsG0680033716.01.T01:CDS 30.0%
AAAATTGGAAGCAATCAGAA+TGG + Chr6:72232721-72232740 MsG0680033716.01.T01:CDS 30.0%
AACTTATTGATGCTTCGTTT+CGG + Chr6:72234113-72234132 MsG0680033716.01.T01:exon 30.0%
AATAGTAATTGGTACTGTGT+AGG + Chr6:72233758-72233777 MsG0680033716.01.T01:intron 30.0%
AATGCTGCATTATATGCTTT+AGG - Chr6:72233721-72233740 None:intergenic 30.0%
ACAATGCTATGAAGTTAGAA+AGG + Chr6:72231365-72231384 MsG0680033716.01.T01:CDS 30.0%
ACTTGATATTAAGCCATTTC+TGG + Chr6:72233423-72233442 MsG0680033716.01.T01:CDS 30.0%
AGAAAATAAAAGCAATCGAG+TGG + Chr6:72233524-72233543 MsG0680033716.01.T01:CDS 30.0%
ATAGTAATTGGTACTGTGTA+GGG + Chr6:72233759-72233778 MsG0680033716.01.T01:intron 30.0%
ATATACTCGTGAATCTGATT+TGG + Chr6:72230730-72230749 MsG0680033716.01.T01:CDS 30.0%
ATCATTTCCGCTAAATTCAA+AGG - Chr6:72229567-72229586 None:intergenic 30.0%
ATCCCTACTTTGTAAAAGAT+TGG - Chr6:72232878-72232897 None:intergenic 30.0%
ATGAGAAGGAATACCAATAT+TGG - Chr6:72231755-72231774 None:intergenic 30.0%
ATGAGTTGTTTGTATATCCA+TGG + Chr6:72231149-72231168 MsG0680033716.01.T01:CDS 30.0%
ATGCTGCATTATATGCTTTA+GGG - Chr6:72233720-72233739 None:intergenic 30.0%
ATGTGAAAATTGGTAGAATC+GGG + Chr6:72233266-72233285 MsG0680033716.01.T01:intron 30.0%
ATTTGATACAAAAGACCGAA+TGG - Chr6:72232320-72232339 None:intergenic 30.0%
CACTATACCTTTGAATTTAG+CGG + Chr6:72229557-72229576 MsG0680033716.01.T01:intron 30.0%
CATCCTAGTTTCTATATCTA+AGG + Chr6:72233118-72233137 MsG0680033716.01.T01:intron 30.0%
CCAAATTCAACAATTGCAAA+GGG - Chr6:72231325-72231344 None:intergenic 30.0%
CTATTGTTTAGCAACTTCTT+TGG + Chr6:72230663-72230682 MsG0680033716.01.T01:intron 30.0%
CTTCTTCTCAAAATATAGCT+TGG - Chr6:72232081-72232100 None:intergenic 30.0%
CTTGAAAGATGATTACTACA+AGG + Chr6:72230781-72230800 MsG0680033716.01.T01:CDS 30.0%
CTTGTTAAGAATGTTGCTAA+GGG + Chr6:72231088-72231107 MsG0680033716.01.T01:CDS 30.0%
GAATGAAACATGAGAGATTA+TGG - Chr6:72230108-72230127 None:intergenic 30.0%
GAATGAGAAAAAAGAATGAG+AGG - Chr6:72229846-72229865 None:intergenic 30.0%
GATGCTTGAACATTTCAATA+AGG + Chr6:72231702-72231721 MsG0680033716.01.T01:CDS 30.0%
GTGTCTGAACAAAAATCATA+AGG + Chr6:72230537-72230556 MsG0680033716.01.T01:intron 30.0%
GTTTCATTCTTTATTCTGCT+CGG + Chr6:72230119-72230138 MsG0680033716.01.T01:intron 30.0%
TAACTCAATCTTATTGCCAA+TGG + Chr6:72234193-72234212 MsG0680033716.01.T01:three_prime_UTR 30.0%
TACAACAATACAATGCTTCA+TGG + Chr6:72229382-72229401 MsG0680033716.01.T01:intron 30.0%
TACGAATACAAATGTCGAAT+TGG - Chr6:72229795-72229814 None:intergenic 30.0%
TCACCTTTAAATCAATGAGA+AGG - Chr6:72231769-72231788 None:intergenic 30.0%
TCCAAATTCAACAATTGCAA+AGG - Chr6:72231326-72231345 None:intergenic 30.0%
TGAAAAGCTGAAAAGTTTGA+AGG + Chr6:72233909-72233928 MsG0680033716.01.T01:CDS 30.0%
TGTTAGAATTCCTTACTCTA+TGG + Chr6:72232293-72232312 MsG0680033716.01.T01:intron 30.0%
TGTTGTCTGTTTCAATTCAT+TGG - Chr6:72231626-72231645 None:intergenic 30.0%
TTTCTAACTTCATAGCATTG+TGG - Chr6:72231366-72231385 None:intergenic 30.0%
TTTCTCATATCGTTTCATAC+TGG + Chr6:72230426-72230445 MsG0680033716.01.T01:intron 30.0%
TTTGAATTTAGCGGAAATGA+TGG + Chr6:72229566-72229585 MsG0680033716.01.T01:intron 30.0%
! AAGAAGCAGGTAATGTATTT+TGG + Chr6:72232095-72232114 MsG0680033716.01.T01:intron 30.0%
! AATTAGAAAGTATGTTGCGA+AGG + Chr6:72231213-72231232 MsG0680033716.01.T01:CDS 30.0%
! ACTTGTTAAGAATGTTGCTA+AGG + Chr6:72231087-72231106 MsG0680033716.01.T01:CDS 30.0%
! ATCTTTTACAAAGTAGGGAT+AGG + Chr6:72232878-72232897 MsG0680033716.01.T01:intron 30.0%
! ATTGTTGTATTTGGTGAGAT+AGG - Chr6:72229442-72229461 None:intergenic 30.0%
! TCGTTGGTTAATGTGAATTT+GGG + Chr6:72231112-72231131 MsG0680033716.01.T01:CDS 30.0%
! TTCGTTGGTTAATGTGAATT+TGG + Chr6:72231111-72231130 MsG0680033716.01.T01:CDS 30.0%
!! ATTGTTTGTTCATAGTGGAT+TGG + Chr6:72233349-72233368 MsG0680033716.01.T01:intron 30.0%
!! GAATTTTAAAGAAGGAAGGA+AGG + Chr6:72234029-72234048 MsG0680033716.01.T01:CDS 30.0%
!! GGAATCTTATTTAAGTTGCT+TGG + Chr6:72233037-72233056 MsG0680033716.01.T01:intron 30.0%
!! TCTGGAATTTTAAAGAAGGA+AGG + Chr6:72234025-72234044 MsG0680033716.01.T01:CDS 30.0%
!! TCTTTAAAATTCCAGAGTTC+CGG - Chr6:72234021-72234040 None:intergenic 30.0%
!! TTGTTGTTTACAGAATGAGA+TGG + Chr6:72232401-72232420 MsG0680033716.01.T01:intron 30.0%
!! TTTTTCAAAATGACCATCCA+TGG - Chr6:72231169-72231188 None:intergenic 30.0%
!!! GAACTCTGGAATTTTAAAGA+AGG + Chr6:72234021-72234040 MsG0680033716.01.T01:CDS 30.0%
!!! TACACTTATTAGCTTTTTGC+GGG - Chr6:72232843-72232862 None:intergenic 30.0%
!!! TTTTGGTGTTGAATTGTTGA+TGG + Chr6:72229173-72229192 MsG0680033716.01.T01:intron 30.0%
AAAAGGAAGAGGAATTAGAG+GGG + Chr6:72232753-72232772 MsG0680033716.01.T01:CDS 35.0%
AAACACATTCTTCTAGCACA+AGG + Chr6:72230077-72230096 MsG0680033716.01.T01:intron 35.0%
AAACATGAATCTATCTCGCT+TGG + Chr6:72229322-72229341 MsG0680033716.01.T01:intron 35.0%
AAAGTTTGAAGGATGAGTTC+GGG + Chr6:72233920-72233939 MsG0680033716.01.T01:CDS 35.0%
ACTGTGTTAAAGATCCAAGT+TGG + Chr6:72233563-72233582 MsG0680033716.01.T01:CDS 35.0%
AGATAGACTATTTGGTTGGA+TGG + Chr6:72231450-72231469 MsG0680033716.01.T01:CDS 35.0%
ATATCTTGGGGACAAAAGTT+GGG + Chr6:72229033-72229052 MsG0680033716.01.T01:intron 35.0%
CAAACTTATATCCCGTGAAA+AGG + Chr6:72232016-72232035 MsG0680033716.01.T01:CDS 35.0%
CATTAGAAATCAGCAAGATG+CGG + Chr6:72231916-72231935 MsG0680033716.01.T01:intron 35.0%
CCCTTTGCAATTGTTGAATT+TGG + Chr6:72231322-72231341 MsG0680033716.01.T01:CDS 35.0%
CGAGAATTTGATGGAGAAAA+TGG - Chr6:72230052-72230071 None:intergenic 35.0%
CTAACAACACTCTTTGTGAT+TGG - Chr6:72232279-72232298 None:intergenic 35.0%
CTCTAATGTGATTCATTACC+TGG - Chr6:72232679-72232698 None:intergenic 35.0%
GAAAAGGAAGAGGAATTAGA+GGG + Chr6:72232752-72232771 MsG0680033716.01.T01:CDS 35.0%
GAAGGATCCAACGAAAATTA+AGG + Chr6:72231231-72231250 MsG0680033716.01.T01:CDS 35.0%
GACTAAGAGAAAACTTTCAG+AGG + Chr6:72233498-72233517 MsG0680033716.01.T01:CDS 35.0%
GACTTATCATTACGAACAAC+AGG - Chr6:72231007-72231026 None:intergenic 35.0%
GGAAAAAGGGGATTTGAAAA+CGG + Chr6:72231522-72231541 MsG0680033716.01.T01:CDS 35.0%
GTATTTGGCAGAAGAACATA+AGG + Chr6:72232461-72232480 MsG0680033716.01.T01:intron 35.0%
GTCGTGAAATTATCGTGAAA+TGG + Chr6:72229632-72229651 MsG0680033716.01.T01:intron 35.0%
GTTGTTTGTATATCCATGGA+TGG + Chr6:72231153-72231172 MsG0680033716.01.T01:CDS 35.0%
TCAATCTTATTGCCAATGGT+TGG + Chr6:72234197-72234216 MsG0680033716.01.T01:three_prime_UTR 35.0%
TCACAAGAAAATTCATGACC+TGG + Chr6:72232592-72232611 MsG0680033716.01.T01:CDS 35.0%
TCGTGATGACTATGATATCA+AGG + Chr6:72231477-72231496 MsG0680033716.01.T01:CDS 35.0%
TGATAAAGAAGGAAACTCCA+AGG + Chr6:72233606-72233625 MsG0680033716.01.T01:CDS 35.0%
TGCTAGAAGAATGTGTTTGA+CGG - Chr6:72230075-72230094 None:intergenic 35.0%
TGCTGCATTATATGCTTTAG+GGG - Chr6:72233719-72233738 None:intergenic 35.0%
TGCTGTTGTTAGCACTTATT+TGG + Chr6:72233799-72233818 MsG0680033716.01.T01:intron 35.0%
TGGATCACATTATTCGTGTT+AGG - Chr6:72229681-72229700 None:intergenic 35.0%
TTAAATGAGTACAACCCTAG+TGG + Chr6:72233982-72234001 MsG0680033716.01.T01:CDS 35.0%
TTCACGAAGTTATTGTACCT+TGG - Chr6:72233626-72233645 None:intergenic 35.0%
TTGGATGTTGCAGAAAGAAA+AGG + Chr6:72232562-72232581 MsG0680033716.01.T01:intron 35.0%
! ACTCTCGGCTATTAATCTTT+TGG + Chr6:72229256-72229275 MsG0680033716.01.T01:intron 35.0%
! AGTCCTTGTTGTAGCAAAAT+GGG - Chr6:72230841-72230860 None:intergenic 35.0%
! ATAGCTTGAGTGTTGTTCTT+TGG - Chr6:72233379-72233398 None:intergenic 35.0%
! ATGAGTTGACACTTTGTGAT+TGG - Chr6:72229612-72229631 None:intergenic 35.0%
! CGCTAAATTCAAAGGTATAG+TGG - Chr6:72229559-72229578 None:intergenic 35.0%
! TAAGGTTGATCAGTCAAATG+TGG + Chr6:72228980-72228999 MsG0680033716.01.T01:CDS 35.0%
! TAGCTTGAGTGTTGTTCTTT+GGG - Chr6:72233378-72233397 None:intergenic 35.0%
! TAGTCCTTGTTGTAGCAAAA+TGG - Chr6:72230842-72230861 None:intergenic 35.0%
! TTTTCAAATCCCCTTTTTCC+TGG - Chr6:72231522-72231541 None:intergenic 35.0%
!! AAGAAGAAAATGGTGTCGTT+TGG - Chr6:72229877-72229896 None:intergenic 35.0%
!! AGAAGAAAATGGTGTCGTTT+GGG - Chr6:72229876-72229895 None:intergenic 35.0%
!! GCTATATTTTGAGAAGAAGC+AGG + Chr6:72232082-72232101 MsG0680033716.01.T01:CDS 35.0%
!! GTATCAGGAGAAAGTATCTA+AGG + Chr6:72231953-72231972 MsG0680033716.01.T01:CDS 35.0%
!! GTGCATGCAAGTTTATTTTC+TGG + Chr6:72228954-72228973 MsG0680033716.01.T01:CDS 35.0%
!! TGCAAAACAAGCATTGGAAT+TGG + Chr6:72232628-72232647 MsG0680033716.01.T01:CDS 35.0%
!! TTCATTGGTCTTCAGCTTTA+AGG - Chr6:72231611-72231630 None:intergenic 35.0%
!!! TTGAGTTTTGAGGACTCTTT+TGG + Chr6:72232539-72232558 MsG0680033716.01.T01:intron 35.0%
AAAATTCATGACCTGGAGAG+AGG + Chr6:72232599-72232618 MsG0680033716.01.T01:CDS 40.0%
AAACAAGCTTGTCTCTGGTT+TGG + Chr6:72231579-72231598 MsG0680033716.01.T01:CDS 40.0%
AAAGCAAACAAGCTTGTCTC+TGG + Chr6:72231574-72231593 MsG0680033716.01.T01:CDS 40.0%
AAAGGAAGAGGAATTAGAGG+GGG + Chr6:72232754-72232773 MsG0680033716.01.T01:CDS 40.0%
AAATTCCAGAGTTCCGGTAT+TGG - Chr6:72234015-72234034 None:intergenic 40.0%
AACAGCCAATGCAAAACGTT+CGG + Chr6:72233089-72233108 MsG0680033716.01.T01:intron 40.0%
AACCACGTGATTCAGGTAAA+AGG - Chr6:72233167-72233186 None:intergenic 40.0%
AAGGAGGAGCTGATTATGAA+AGG + Chr6:72231250-72231269 MsG0680033716.01.T01:CDS 40.0%
AAGTTTGAAGGATGAGTTCG+GGG + Chr6:72233921-72233940 MsG0680033716.01.T01:CDS 40.0%
AATTCCAGAGTTCCGGTATT+GGG - Chr6:72234014-72234033 None:intergenic 40.0%
ACTGGATGCAAAACAAGCAT+TGG + Chr6:72232622-72232641 MsG0680033716.01.T01:CDS 40.0%
AGCTACGGTGATGTTAAAGT+TGG + Chr6:72230968-72230987 MsG0680033716.01.T01:CDS 40.0%
AGGAGGAGCTGATTATGAAA+GGG + Chr6:72231251-72231270 MsG0680033716.01.T01:CDS 40.0%
AGGTAAGAATCGGTAGAATC+AGG + Chr6:72230368-72230387 MsG0680033716.01.T01:intron 40.0%
CAAAGGGTAATTGTCCATGA+AGG - Chr6:72231309-72231328 None:intergenic 40.0%
CACAGTGCAGTAACTTTCAT+CGG - Chr6:72231283-72231302 None:intergenic 40.0%
CAGGTAAAAGGATGTTGCAT+TGG - Chr6:72233155-72233174 None:intergenic 40.0%
CTGTTTGCATTCAAAGACGA+TGG + Chr6:72230319-72230338 MsG0680033716.01.T01:intron 40.0%
GACAACAAGCAAACATCATG+AGG + Chr6:72231639-72231658 MsG0680033716.01.T01:CDS 40.0%
GAGGAGATAGACTATTTGGT+TGG + Chr6:72231446-72231465 MsG0680033716.01.T01:CDS 40.0%
GATATCTTGGGGACAAAAGT+TGG + Chr6:72229032-72229051 MsG0680033716.01.T01:intron 40.0%
GGAAAAGGAAGAGGAATTAG+AGG + Chr6:72232751-72232770 MsG0680033716.01.T01:CDS 40.0%
GGAAGATCTTCAACAAACAC+TGG + Chr6:72232778-72232797 MsG0680033716.01.T01:CDS 40.0%
GGATCCAACGAAAATTAAGG+AGG + Chr6:72231234-72231253 MsG0680033716.01.T01:CDS 40.0%
GGGTGAACGTTTCTTAATCT+TGG + Chr6:72229142-72229161 MsG0680033716.01.T01:intron 40.0%
GTGAGAGAAGATGAAGAATG+TGG - Chr6:72230020-72230039 None:intergenic 40.0%
GTTTGCTTTCCTATTGTCCT+CGG - Chr6:72231563-72231582 None:intergenic 40.0%
TCCTTACTCTATGGACCATT+CGG + Chr6:72232302-72232321 MsG0680033716.01.T01:intron 40.0%
TGTTGAATTTGGACGACAGT+GGG + Chr6:72231333-72231352 MsG0680033716.01.T01:CDS 40.0%
TTACTTGGGTTTACGAAAGC+AGG + Chr6:72231420-72231439 MsG0680033716.01.T01:CDS 40.0%
TTGCTCCATCACTTTCCTTA+GGG - Chr6:72231674-72231693 None:intergenic 40.0%
TTGGAGATTGAACAGCTGAA+AGG + Chr6:72232647-72232666 MsG0680033716.01.T01:CDS 40.0%
TTGTTGAATTTGGACGACAG+TGG + Chr6:72231332-72231351 MsG0680033716.01.T01:CDS 40.0%
TTTGCTCCATCACTTTCCTT+AGG - Chr6:72231675-72231694 None:intergenic 40.0%
! AAACACCGAACGTTTTGCAT+TGG - Chr6:72233097-72233116 None:intergenic 40.0%
! AGCTCCTCCTTAATTTTCGT+TGG - Chr6:72231241-72231260 None:intergenic 40.0%
! ATCCTTTTACCTGAATCACG+TGG + Chr6:72233162-72233181 MsG0680033716.01.T01:intron 40.0%
! CTTTTGCAGATCCTTTTCAC+GGG - Chr6:72232030-72232049 None:intergenic 40.0%
! GCTTTTGCAGATCCTTTTCA+CGG - Chr6:72232031-72232050 None:intergenic 40.0%
! GGTTGAGCATTTTTGTACCA+CGG + Chr6:72229216-72229235 MsG0680033716.01.T01:intron 40.0%
! TCAACAAACACTGGTTGTTC+AGG + Chr6:72232787-72232806 MsG0680033716.01.T01:CDS 40.0%
! TTGCCCATTTTGCTACAACA+AGG + Chr6:72230835-72230854 MsG0680033716.01.T01:CDS 40.0%
!! ATTCTAGCTCGAACAGACTT+TGG + Chr6:72234168-72234187 MsG0680033716.01.T01:three_prime_UTR 40.0%
!! CGCATCTTGCTGATTTCTAA+TGG - Chr6:72231918-72231937 None:intergenic 40.0%
!!! GTTTTGAGGACTCTTTTGGT+TGG + Chr6:72232543-72232562 MsG0680033716.01.T01:intron 40.0%
!!! TGATGGAATTTTGGAGCTGA+AGG + Chr6:72229093-72229112 MsG0680033716.01.T01:intron 40.0%
AACAAGCAACCACGTGATTC+AGG - Chr6:72233174-72233193 None:intergenic 45.0%
AATCAGGCGAGGTCTATGAA+AGG + Chr6:72230384-72230403 MsG0680033716.01.T01:intron 45.0%
ACCGAATGGTCCATAGAGTA+AGG - Chr6:72232306-72232325 None:intergenic 45.0%
ACTTTGAACGGATGCCAACT+TGG - Chr6:72233580-72233599 None:intergenic 45.0%
AGACACACGTGCACAATTGT+GGG + Chr6:72230884-72230903 MsG0680033716.01.T01:CDS 45.0%
AGTGTCCCTAAGGAAAGTGA+TGG + Chr6:72231666-72231685 MsG0680033716.01.T01:CDS 45.0%
ATGAGTACAACCCTAGTGGT+CGG + Chr6:72233986-72234005 MsG0680033716.01.T01:CDS 45.0%
CAAACACCTCCAGGAAAAAG+GGG + Chr6:72231510-72231529 MsG0680033716.01.T01:CDS 45.0%
CGATGAAAGTTACTGCACTG+TGG + Chr6:72231281-72231300 MsG0680033716.01.T01:CDS 45.0%
CTCTTAGCTGCTTCCAGAAA+TGG - Chr6:72233439-72233458 None:intergenic 45.0%
GAAAAGAAGCCGAGGACAAT+AGG + Chr6:72231551-72231570 MsG0680033716.01.T01:CDS 45.0%
GAATGTTGCTAAGGGTTCGT+TGG + Chr6:72231096-72231115 MsG0680033716.01.T01:CDS 45.0%
GAGCGAGGAGATAGACTATT+TGG + Chr6:72231442-72231461 MsG0680033716.01.T01:CDS 45.0%
GCAAACACCTCCAGGAAAAA+GGG + Chr6:72231509-72231528 MsG0680033716.01.T01:CDS 45.0%
GGATCATGAAAATGCCAGTC+TGG + Chr6:72231974-72231993 MsG0680033716.01.T01:CDS 45.0%
GGCAATAGCAGAGCAACAAA+AGG + Chr6:72232422-72232441 MsG0680033716.01.T01:intron 45.0%
GGGGATTTGAAAACGGTTTC+TGG + Chr6:72231529-72231548 MsG0680033716.01.T01:CDS 45.0%
GTGTGAACGTGTCTGATTCT+TGG + Chr6:72229195-72229214 MsG0680033716.01.T01:intron 45.0%
GTTTGACGGCGAGAATTTGA+TGG - Chr6:72230061-72230080 None:intergenic 45.0%
TATAGTTGGCAAACACCTCC+AGG + Chr6:72231501-72231520 MsG0680033716.01.T01:CDS 45.0%
TCACTAGCAGTACTAACAGC+AGG - Chr6:72231031-72231050 None:intergenic 45.0%
TGCAGTAGCTACAACTCTGA+AGG + Chr6:72233957-72233976 MsG0680033716.01.T01:CDS 45.0%
TGTACCACGGTATTCCGATA+GGG + Chr6:72229229-72229248 MsG0680033716.01.T01:intron 45.0%
TGTGGTAAGCGGGATTACTT+GGG + Chr6:72231406-72231425 MsG0680033716.01.T01:CDS 45.0%
TTGTACCACGGTATTCCGAT+AGG + Chr6:72229228-72229247 MsG0680033716.01.T01:intron 45.0%
! TCAAATCCCCTTTTTCCTGG+AGG - Chr6:72231519-72231538 None:intergenic 45.0%
!! AAAATGGTGTCGTTTGGGTG+AGG - Chr6:72229871-72229890 None:intergenic 45.0%
AAGGAAGGCTTCGTTGAAGG+AGG + Chr6:72234044-72234063 MsG0680033716.01.T01:CDS 50.0%
AATCGAGTGGTGCTCGAAGT+GGG + Chr6:72233537-72233556 MsG0680033716.01.T01:CDS 50.0%
ACAGCTGAAAGGAGCTTTCC+AGG + Chr6:72232658-72232677 MsG0680033716.01.T01:CDS 50.0%
ACTGCACTGTGGAACCTTCA+TGG + Chr6:72231292-72231311 MsG0680033716.01.T01:CDS 50.0%
AGAAATCAGCAAGATGCGGC+AGG + Chr6:72231920-72231939 MsG0680033716.01.T01:intron 50.0%
AGAATCGGTAGAATCAGGCG+AGG + Chr6:72230373-72230392 MsG0680033716.01.T01:intron 50.0%
AGCAATCAGAATGGAGCTGC+AGG + Chr6:72232730-72232749 MsG0680033716.01.T01:CDS 50.0%
AGGAAGGAAGGCTTCGTTGA+AGG + Chr6:72234041-72234060 MsG0680033716.01.T01:CDS 50.0%
AGGAAGGCTTCGTTGAAGGA+GGG + Chr6:72234045-72234064 MsG0680033716.01.T01:CDS 50.0%
CAGAATGGAGCTGCAGGAAA+AGG + Chr6:72232736-72232755 MsG0680033716.01.T01:CDS 50.0%
CTGTGGTAAGCGGGATTACT+TGG + Chr6:72231405-72231424 MsG0680033716.01.T01:CDS 50.0%
GAATTTGGACGACAGTGGGA+TGG + Chr6:72231337-72231356 MsG0680033716.01.T01:CDS 50.0%
GAGACACACGTGCACAATTG+TGG + Chr6:72230883-72230902 MsG0680033716.01.T01:CDS 50.0%
GGCAAACACCTCCAGGAAAA+AGG + Chr6:72231508-72231527 MsG0680033716.01.T01:CDS 50.0%
TAGTGGTCGGTACCCAATAC+CGG + Chr6:72233999-72234018 MsG0680033716.01.T01:CDS 50.0%
TTCCGATAGGGAGTGACTCT+CGG + Chr6:72229241-72229260 MsG0680033716.01.T01:intron 50.0%
! GGTTTCTGGAAAAGAAGCCG+AGG + Chr6:72231543-72231562 MsG0680033716.01.T01:CDS 50.0%
! TGAAAATGCCAGTCTGGAGC+TGG + Chr6:72231980-72231999 MsG0680033716.01.T01:CDS 50.0%
! TGTGGGTGACTTGCATGAGA+CGG + Chr6:72230901-72230920 MsG0680033716.01.T01:CDS 50.0%
!! AGCTTTCTAGCAGAGCACTG+TGG + Chr6:72231388-72231407 MsG0680033716.01.T01:CDS 50.0%
!! ATGAGGCGAAAGTGTCCCTA+AGG + Chr6:72231656-72231675 MsG0680033716.01.T01:CDS 50.0%
!! GTATTGGGTACCGACCACTA+GGG - Chr6:72233999-72234018 None:intergenic 50.0%
!! TAGCAGAGCACTGTGGTAAG+CGG + Chr6:72231395-72231414 MsG0680033716.01.T01:CDS 50.0%
AGCCGAGAGTCACTCCCTAT+CGG - Chr6:72229246-72229265 None:intergenic 55.0%
CAATCGAGTGGTGCTCGAAG+TGG + Chr6:72233536-72233555 MsG0680033716.01.T01:CDS 55.0%
CACTCCCTATCGGAATACCG+TGG - Chr6:72229236-72229255 None:intergenic 55.0%
GAAGGATGAGTTCGGGGATG+AGG + Chr6:72233927-72233946 MsG0680033716.01.T01:CDS 55.0%
GCAGGCTGAACGCAAGTATC+AGG + Chr6:72231938-72231957 MsG0680033716.01.T01:CDS 55.0%
GGAAGAGGAATTAGAGGGGG+TGG + Chr6:72232757-72232776 MsG0680033716.01.T01:CDS 55.0%
GGAGCTGCAGGAAAAGGAAG+AGG + Chr6:72232742-72232761 MsG0680033716.01.T01:CDS 55.0%
GGTACCCAATACCGGAACTC+TGG + Chr6:72234007-72234026 MsG0680033716.01.T01:CDS 55.0%
GGTTTACGAAAGCAGGAGCG+AGG + Chr6:72231427-72231446 MsG0680033716.01.T01:CDS 55.0%
TCATGACCTGGAGAGAGGAC+TGG + Chr6:72232604-72232623 MsG0680033716.01.T01:CDS 55.0%
TTGCATCCAGTCCTCTCTCC+AGG - Chr6:72232613-72232632 None:intergenic 55.0%
! CCAGTCTGGAGCTGGAAGTT+CGG + Chr6:72231988-72232007 MsG0680033716.01.T01:CDS 55.0%
!! AGCAGAGCACTGTGGTAAGC+GGG + Chr6:72231396-72231415 MsG0680033716.01.T01:CDS 55.0%
!! GGTATTGGGTACCGACCACT+AGG - Chr6:72234000-72234019 None:intergenic 55.0%
CCGAACTTCCAGCTCCAGAC+TGG - Chr6:72231991-72232010 None:intergenic 60.0%
! GTCTGGAGCTGGAAGTTCGG+AGG + Chr6:72231991-72232010 MsG0680033716.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 72228939 72234221 72228939 ID=MsG0680033716.01;Name=MsG0680033716.01
Chr6 mRNA 72228939 72234221 72228939 ID=MsG0680033716.01.T01;Parent=MsG0680033716.01;Name=MsG0680033716.01.T01;_AED=0.24;_eAED=0.24;_QI=0|0.6|0.66|1|1|1|6|99|679
Chr6 exon 72233889 72234221 72233889 ID=MsG0680033716.01.T01:exon:4254;Parent=MsG0680033716.01.T01
Chr6 exon 72233364 72233627 72233364 ID=MsG0680033716.01.T01:exon:4253;Parent=MsG0680033716.01.T01
Chr6 exon 72232575 72232859 72232575 ID=MsG0680033716.01.T01:exon:4252;Parent=MsG0680033716.01.T01
Chr6 exon 72231922 72232103 72231922 ID=MsG0680033716.01.T01:exon:4251;Parent=MsG0680033716.01.T01
Chr6 exon 72230713 72231724 72230713 ID=MsG0680033716.01.T01:exon:4250;Parent=MsG0680033716.01.T01
Chr6 exon 72228939 72229001 72228939 ID=MsG0680033716.01.T01:exon:4249;Parent=MsG0680033716.01.T01
Chr6 CDS 72228939 72229001 72228939 ID=MsG0680033716.01.T01:cds;Parent=MsG0680033716.01.T01
Chr6 CDS 72230713 72231724 72230713 ID=MsG0680033716.01.T01:cds;Parent=MsG0680033716.01.T01
Chr6 CDS 72231922 72232103 72231922 ID=MsG0680033716.01.T01:cds;Parent=MsG0680033716.01.T01
Chr6 CDS 72232575 72232859 72232575 ID=MsG0680033716.01.T01:cds;Parent=MsG0680033716.01.T01
Chr6 CDS 72233364 72233627 72233364 ID=MsG0680033716.01.T01:cds;Parent=MsG0680033716.01.T01
Chr6 CDS 72233889 72234122 72233889 ID=MsG0680033716.01.T01:cds;Parent=MsG0680033716.01.T01
Chr6 three_prime_UTR 72234123 72234221 72234123 ID=MsG0680033716.01.T01:three_prime_utr;Parent=MsG0680033716.01.T01
Gene Sequence

>MsG0680033716.01.T01

ATGTCGAACGCTATAGTGCATGCAAGTTTATTTTCTGGTTATAAGGTTGATCAGTCAAATGTGATGTACCAAAATTTAGAATATACTCGTGAATCTGATTTGGAGTACTACAAACGCATATATTACAAAGACTTGAAAGATGATTACTACAAGGACAAACTCAAAATATCTGATTCAACATATCGTTGCCCATTTTGCTACAACAAGGACTACTACTCTTTGAGTGAGCTATTGAGACACACGTGCACAATTGTGGGTGACTTGCATGAGACGGTTAAAGATATTGCTAAGCATTCAGCTCTTGAAATGTATATTGAAAGCTACGGTGATGTTAAAGTTGGTAAAGATAAGTCTCCTGTTGTTCGTAATGATAAGTCACCTGCTGTTAGTACTGCTAGTGATAAGTCAATTAATTTTAGTATCACTAACGAGAAGTCACTTGTTAAGAATGTTGCTAAGGGTTCGTTGGTTAATGTGAATTTGGGTGATGATGATGATGATGAGTTGTTTGTATATCCATGGATGGTCATTTTGAAAAATATTGTTACTGGTTTTAACCCAAAAATTAGAAAGTATGTTGCGAAGGATCCAACGAAAATTAAGGAGGAGCTGATTATGAAAGGGTTTCATCCGATGAAAGTTACTGCACTGTGGAACCTTCATGGACAATTACCCTTTGCAATTGTTGAATTTGGACGACAGTGGGATGGTTTCCACAATGCTATGAAGTTAGAAAGGAGCTTTCTAGCAGAGCACTGTGGTAAGCGGGATTACTTGGGTTTACGAAAGCAGGAGCGAGGAGATAGACTATTTGGTTGGATGGCACGTCGTGATGACTATGATATCAAGGATATAGTTGGCAAACACCTCCAGGAAAAAGGGGATTTGAAAACGGTTTCTGGAAAAGAAGCCGAGGACAATAGGAAAGCAAACAAGCTTGTCTCTGGTTTGGAAAATACCTTAAAGCTGAAGACCAATGAATTGAAACAGACAACAAGCAAACATCATGAGGCGAAAGTGTCCCTAAGGAAAGTGATGGAGCAAAAAGAGAAGATGCTTGAACATTTCAATAAGGAAATCAGCAAGATGCGGCAGGCTGAACGCAAGTATCAGGAGAAAGTATCTAAGGATCATGAAAATGCCAGTCTGGAGCTGGAAGTTCGGAGGAACAAACTTATATCCCGTGAAAAGGATCTGCAAAAGCGTCAAGAAGATAATCATAATGAGAGAACCAAGCTATATTTTGAGAAGAAGCAGAAAGAAAAGGAGAAACTTCACAAGAAAATTCATGACCTGGAGAGAGGACTGGATGCAAAACAAGCATTGGAATTGGAGATTGAACAGCTGAAAGGAGCTTTCCAGGTAATGAATCACATTAGAGATACTGATCTAGATGAGAAGAAAAAATTGGAAGCAATCAGAATGGAGCTGCAGGAAAAGGAAGAGGAATTAGAGGGGGTGGAAGATCTTCAACAAACACTGGTTGTTCAGGAGCGCAAAACTAATGACGAATTGCAAGATGCCCGCAAAAAGCTAATAAGTTGGATTGGCTGCCCAAAGAACAACACTCAAGCTATAATTTCTGTGAAAAGGATGGGTGAACTTGATATTAAGCCATTTCTGGAAGCAGCTAAGAGAAAATTTTCTAATGAAATGAATGAGAAAGCAGCAACTAAGACTAAGAGAAAACTTTCAGAGGCTGAGAAAATAAAAGCAATCGAGTGGTGCTCGAAGTGGGAAGACTGTGTTAAAGATCCAAGTTGGCATCCGTTCAAAGTTGTAACTGATAAAGAAGGAAACTCCAAGGAAATTTTAGACGGAGAAGATGAAAAGCTGAAAAGTTTGAAGGATGAGTTCGGGGATGAGGTGCATGATGCAGTAGCTACAACTCTGAAGGAGTTAAATGAGTACAACCCTAGTGGTCGGTACCCAATACCGGAACTCTGGAATTTTAAAGAAGGAAGGAAGGCTTCGTTGAAGGAGGGTGTTTCCCATTTAATTAAGCAATGGAAATCAAATAAGGGAAAGAAAACTTATTGA
Protein sequence

>MsG0680033716.01.T01

MSNAIVHASLFSGYKVDQSNVMYQNLEYTRESDLEYYKRIYYKDLKDDYYKDKLKISDSTYRCPFCYNKDYYSLSELLRHTCTIVGDLHETVKDIAKHSALEMYIESYGDVKVGKDKSPVVRNDKSPAVSTASDKSINFSITNEKSLVKNVAKGSLVNVNLGDDDDDELFVYPWMVILKNIVTGFNPKIRKYVAKDPTKIKEELIMKGFHPMKVTALWNLHGQLPFAIVEFGRQWDGFHNAMKLERSFLAEHCGKRDYLGLRKQERGDRLFGWMARRDDYDIKDIVGKHLQEKGDLKTVSGKEAEDNRKANKLVSGLENTLKLKTNELKQTTSKHHEAKVSLRKVMEQKEKMLEHFNKEISKMRQAERKYQEKVSKDHENASLELEVRRNKLISREKDLQKRQEDNHNERTKLYFEKKQKEKEKLHKKIHDLERGLDAKQALELEIEQLKGAFQVMNHIRDTDLDEKKKLEAIRMELQEKEEELEGVEDLQQTLVVQERKTNDELQDARKKLISWIGCPKNNTQAIISVKRMGELDIKPFLEAAKRKFSNEMNEKAATKTKRKLSEAEKIKAIEWCSKWEDCVKDPSWHPFKVVTDKEGNSKEILDGEDEKLKSLKDEFGDEVHDAVATTLKELNEYNPSGRYPIPELWNFKEGRKASLKEGVSHLIKQWKSNKGKKTY*