AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034435.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034435.01.T01 MTR_2g027860 72.611 157 5 1 1 119 1 157 2.14e-60 192
MsG0680034435.01.T01 MTR_7g088070 55.660 106 12 1 49 119 50 155 1.36e-29 111
MsG0680034435.01.T01 MTR_7g088070 53.636 110 12 1 49 119 50 159 5.30e-29 110
MsG0680034435.01.T01 MTR_7g098250 48.780 123 21 2 33 119 252 368 1.75e-25 103
MsG0680034435.01.T01 MTR_1g080330 47.619 126 27 2 33 119 156 281 3.34e-25 100
MsG0680034435.01.T01 MTR_1g080330 47.619 126 27 2 33 119 156 281 1.41e-24 100
MsG0680034435.01.T01 MTR_7g115530 49.074 108 19 1 48 119 217 324 2.34e-23 95.9
MsG0680034435.01.T01 MTR_7g115530 49.074 108 19 1 48 119 217 324 4.77e-23 96.3
MsG0680034435.01.T01 MTR_1g053835 42.017 119 35 1 35 119 244 362 2.60e-22 94.4
MsG0680034435.01.T01 MTR_6g444980 45.536 112 22 2 47 119 33 144 5.98e-22 92.4
MsG0680034435.01.T01 MTR_6g444980 45.536 112 22 2 47 119 33 144 6.42e-22 92.4
MsG0680034435.01.T01 MTR_2g027800 42.727 110 29 1 47 122 37 146 4.45e-21 89.4
MsG0680034435.01.T01 MTR_5g027440 42.857 119 20 1 49 119 25 143 6.45e-21 88.6
MsG0680034435.01.T01 MTR_4g081710 39.167 120 26 1 47 119 15 134 1.17e-20 88.6
MsG0680034435.01.T01 MTR_1g111560 87.234 47 6 0 119 165 488 534 4.94e-20 88.6
MsG0680034435.01.T01 MTR_7g093030 40.367 109 30 1 46 119 209 317 4.51e-19 84.7
MsG0680034435.01.T01 MTR_6g032990 37.313 134 28 2 47 128 40 169 4.89e-19 84.7
MsG0680034435.01.T01 MTR_2g027800 37.903 124 29 1 47 122 37 160 4.96e-19 84.0
MsG0680034435.01.T01 MTR_7g115530 45.977 87 47 0 48 134 217 303 4.42e-18 81.6
MsG0680034435.01.T01 MTR_1g090670 64.151 53 19 0 47 99 42 94 7.04e-18 80.5
MsG0680034435.01.T01 MTR_5g041350 35.537 121 30 1 47 119 13 133 9.60e-18 80.9
MsG0680034435.01.T01 MTR_7g115530 52.857 70 33 0 48 117 217 286 1.14e-17 80.1
MsG0680034435.01.T01 MTR_7g115530 66.038 53 18 0 48 100 217 269 1.74e-17 79.3
MsG0680034435.01.T01 MTR_7g115530 67.308 52 17 0 48 99 217 268 3.61e-17 78.2
MsG0680034435.01.T01 MTR_7g093030 46.667 75 35 1 46 115 209 283 3.66e-16 75.9
MsG0680034435.01.T01 MTR_2g086450 58.491 53 22 0 47 99 43 95 1.39e-15 74.7
MsG0680034435.01.T01 MTR_2g023580 57.812 64 25 1 52 113 58 121 1.38e-14 70.5
MsG0680034435.01.T01 MTR_1g053830 43.077 65 37 0 35 99 4 68 2.00e-14 67.0
MsG0680034435.01.T01 MTR_7g068600 54.412 68 28 1 49 113 13 80 1.17e-13 68.2
MsG0680034435.01.T01 MTR_1g053800 60.784 51 20 0 49 99 177 227 2.32e-13 68.2
MsG0680034435.01.T01 MTR_8g086410 53.846 65 29 1 52 116 114 177 2.97e-13 68.2
MsG0680034435.01.T01 MTR_7g069660 56.364 55 24 0 52 106 74 128 3.30e-13 67.8
MsG0680034435.01.T01 MTR_1g112370 50.000 66 33 0 52 117 25 90 7.19e-13 67.0
MsG0680034435.01.T01 MTR_3g450310 49.231 65 33 0 52 116 22 86 7.81e-13 65.5
MsG0680034435.01.T01 MTR_8g086410 58.182 55 23 0 52 106 114 168 9.71e-13 66.6
MsG0680034435.01.T01 MTR_8g086410 58.182 55 23 0 52 106 112 166 1.05e-12 66.6
MsG0680034435.01.T01 MTR_6g071625 57.407 54 23 0 52 105 205 258 1.40e-12 66.2
MsG0680034435.01.T01 MTR_2g016220 55.385 65 25 1 52 116 92 152 1.68e-12 65.9
MsG0680034435.01.T01 MTR_2g084230 60.000 55 22 0 52 106 100 154 1.86e-12 65.9
MsG0680034435.01.T01 MTR_2g016220 60.000 55 22 0 52 106 92 146 1.86e-12 65.9
MsG0680034435.01.T01 MTR_2g084230 60.000 55 22 0 52 106 100 154 1.89e-12 65.5
MsG0680034435.01.T01 MTR_2g016220 60.000 55 22 0 52 106 92 146 1.99e-12 65.9
MsG0680034435.01.T01 MTR_8g066310 56.364 55 24 0 52 106 176 230 2.63e-12 65.5
MsG0680034435.01.T01 MTR_0223s0040 57.407 54 23 0 52 105 21 74 3.38e-12 64.7
MsG0680034435.01.T01 MTR_1g093080 36.937 111 62 2 2 104 156 266 4.89e-12 63.9
MsG0680034435.01.T01 MTR_5g029470 57.407 54 23 0 52 105 222 275 6.02e-12 64.3
MsG0680034435.01.T01 MTR_3g064840 57.407 54 23 0 52 105 277 330 6.10e-12 64.3
MsG0680034435.01.T01 MTR_1g021520 55.556 54 24 0 52 105 129 182 2.00e-11 62.4
MsG0680034435.01.T01 MTR_1g093080 38.679 106 57 2 2 99 156 261 5.33e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034435.01.T01 AT2G01060 63.158 114 5 1 43 119 9 122 1.02e-36 130
MsG0680034435.01.T01 AT4G13640 44.355 124 21 1 47 122 35 158 2.24e-25 100
MsG0680034435.01.T01 AT4G13640 44.628 121 19 1 47 119 35 155 2.90e-25 100
MsG0680034435.01.T01 AT4G28610 39.610 154 56 1 41 157 217 370 8.06e-25 100
MsG0680034435.01.T01 AT3G24120 43.802 121 20 1 47 119 39 159 2.15e-24 98.2
MsG0680034435.01.T01 AT3G24120 43.802 121 20 1 47 119 39 159 2.17e-24 98.2
MsG0680034435.01.T01 AT5G29000 46.923 130 28 2 29 119 170 297 1.63e-23 97.1
MsG0680034435.01.T01 AT5G29000 46.923 130 28 2 29 119 170 297 1.63e-23 97.1
MsG0680034435.01.T01 AT3G04450 37.736 159 54 4 1 119 154 307 2.33e-23 97.1
MsG0680034435.01.T01 AT3G04450 37.736 159 54 4 1 119 154 307 2.33e-23 97.1
MsG0680034435.01.T01 AT5G29000 46.923 130 28 2 29 119 213 340 2.43e-23 97.1
MsG0680034435.01.T01 AT3G04450 37.736 159 54 4 1 119 194 347 2.80e-23 97.1
MsG0680034435.01.T01 AT3G13040 44.444 117 24 1 44 119 236 352 1.60e-22 95.1
MsG0680034435.01.T01 AT3G13040 44.444 117 24 1 44 119 236 352 1.60e-22 95.1
MsG0680034435.01.T01 AT3G13040 44.444 117 24 1 44 119 236 352 1.60e-22 95.1
MsG0680034435.01.T01 AT1G79430 45.455 121 23 2 47 128 32 148 1.69e-22 94.0
MsG0680034435.01.T01 AT3G12730 69.811 53 16 0 47 99 21 73 2.51e-20 86.3
MsG0680034435.01.T01 AT2G20400 47.619 105 19 1 52 120 234 338 2.57e-20 88.6
MsG0680034435.01.T01 AT2G20400 47.170 106 19 1 52 120 234 339 3.59e-20 88.2
MsG0680034435.01.T01 AT3G04030 35.088 171 47 5 14 128 9 171 5.79e-20 87.4
MsG0680034435.01.T01 AT3G04030 35.802 162 44 4 14 119 9 166 6.08e-20 87.4
MsG0680034435.01.T01 AT1G69580 35.556 135 30 2 47 128 32 162 6.47e-19 84.0
MsG0680034435.01.T01 AT5G45580 53.425 73 34 0 47 119 5 77 6.69e-19 82.8
MsG0680034435.01.T01 AT3G04450 39.823 113 62 3 1 112 194 301 7.54e-19 83.6
MsG0680034435.01.T01 AT5G45580 53.425 73 34 0 47 119 21 93 7.76e-19 82.8
MsG0680034435.01.T01 AT5G18240 37.903 124 26 1 47 119 43 166 8.00e-19 84.3
MsG0680034435.01.T01 AT5G18240 37.903 124 26 1 47 119 43 166 8.00e-19 84.3
MsG0680034435.01.T01 AT5G18240 36.842 133 29 2 47 128 43 171 8.35e-19 84.3
MsG0680034435.01.T01 AT5G18240 36.842 133 29 2 47 128 43 171 8.35e-19 84.3
MsG0680034435.01.T01 AT5G18240 37.903 124 26 1 47 119 43 166 9.85e-19 84.0
MsG0680034435.01.T01 AT5G29000 46.535 101 52 1 29 129 213 311 1.78e-18 82.4
MsG0680034435.01.T01 AT5G06800 40.678 118 33 2 37 119 182 297 3.68e-18 82.0
MsG0680034435.01.T01 AT5G06800 39.024 123 33 2 37 119 182 302 1.61e-17 80.5
MsG0680034435.01.T01 AT3G04030 34.503 171 47 6 14 128 9 170 1.83e-17 80.5
MsG0680034435.01.T01 AT1G69580 34.559 136 31 3 47 128 32 163 5.19e-17 78.6
MsG0680034435.01.T01 AT4G04605 55.556 63 28 0 52 114 17 79 5.45e-16 74.3
MsG0680034435.01.T01 AT5G06800 48.684 76 37 1 37 112 182 255 1.36e-15 73.9
MsG0680034435.01.T01 AT2G42660 60.714 56 22 0 52 107 53 108 6.63e-15 71.6
MsG0680034435.01.T01 AT2G40260 54.795 73 25 1 52 124 85 149 1.25e-14 72.4
MsG0680034435.01.T01 AT2G06020 52.830 53 25 0 47 99 84 136 6.16e-13 67.0
MsG0680034435.01.T01 AT2G38300 53.333 60 28 0 52 111 57 116 1.48e-12 65.9
MsG0680034435.01.T01 AT5G04290 70.732 41 12 0 119 159 516 556 1.70e-12 66.6
MsG0680034435.01.T01 AT5G04290 70.732 41 12 0 119 159 516 556 1.71e-12 66.6
MsG0680034435.01.T01 AT1G14600 56.140 57 25 0 52 108 26 82 2.53e-12 64.7
MsG0680034435.01.T01 AT5G16560 57.407 54 23 0 52 105 222 275 4.29e-12 65.1
MsG0680034435.01.T01 AT1G32240 57.407 54 23 0 52 105 216 269 4.63e-12 64.7
MsG0680034435.01.T01 AT1G32240 57.407 54 23 0 52 105 216 269 5.86e-12 64.3
MsG0680034435.01.T01 AT4G17695 57.407 54 23 0 52 105 167 220 6.86e-12 63.9
MsG0680034435.01.T01 AT2G02060 59.322 59 23 1 52 109 32 90 7.72e-12 63.2
MsG0680034435.01.T01 AT2G02060 59.322 59 23 1 52 109 32 90 7.72e-12 63.2
MsG0680034435.01.T01 AT5G42630 55.556 54 24 0 52 105 108 161 8.17e-12 62.8
MsG0680034435.01.T01 AT5G42630 55.556 54 24 0 52 105 108 161 1.87e-11 62.4
MsG0680034435.01.T01 AT3G25790 48.148 54 28 0 54 107 201 254 6.62e-11 60.8

Find 47 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAGCAATCTATTAGTTAA+TGG 0.290398 6:-87655148 MsG0680034435.01.T01:CDS
ATGGCTCTTAACATGGTAAA+TGG 0.306660 6:+87654722 None:intergenic
CCATGTTAAGAGCCATTTGC+AGG 0.349218 6:-87654715 MsG0680034435.01.T01:intron
CATAACTCTGAGGACACCTT+TGG 0.375653 6:+87654761 None:intergenic
CAAAGGTGTCCTCAGAGTTA+TGG 0.377183 6:-87654760 MsG0680034435.01.T01:CDS
TGAGTTGAGATTAGAGTTGT+TGG 0.390955 6:+87655066 None:intergenic
AATGGTCAACATATAGATTC+TGG 0.392543 6:-87655130 MsG0680034435.01.T01:CDS
AAAGGTGTCCTCAGAGTTAT+GGG 0.402741 6:-87654759 MsG0680034435.01.T01:CDS
GTTGCTGATTCGAGTTTAGT+TGG 0.426457 6:-87655169 MsG0680034435.01.T01:CDS
GATGAAAATGAGGAAGAAAA+TGG 0.461482 6:-87653769 MsG0680034435.01.T01:CDS
GAAGCGACTACATGAACAAT+TGG 0.469698 6:-87654062 MsG0680034435.01.T01:CDS
ATTGTTAGACATGTCTATCA+AGG 0.476478 6:-87653808 MsG0680034435.01.T01:CDS
ATAACTCTGAGGACACCTTT+GGG 0.476739 6:+87654762 None:intergenic
GGTAGAAGCGCAATGGATCC+TGG 0.480877 6:-87655109 MsG0680034435.01.T01:CDS
AGGAACTCACAGCAAACAAA+GGG 0.483133 6:-87652045 MsG0680034435.01.T01:CDS
CTCAGAGTTATGGGTGTACA+AGG 0.485843 6:-87654750 MsG0680034435.01.T01:CDS
TGAAGCACTAAAGCTTCAAA+TGG 0.488754 6:-87654092 MsG0680034435.01.T01:CDS
AAGTGCACATTACCTGCAAA+TGG 0.502884 6:+87654703 None:intergenic
AGCGCAATGGATCCTGGTAG+TGG 0.503101 6:-87655103 MsG0680034435.01.T01:CDS
CCCTTAGGTGCCACACCCAA+AGG 0.505122 6:-87654777 MsG0680034435.01.T01:intron
CTCGAATCAGCAACATTCGT+TGG 0.516899 6:+87655178 None:intergenic
CTGTACTGTAGGTTAAGTTA+AGG 0.521227 6:-87652614 MsG0680034435.01.T01:intron
AATTGCATGCTAACCTGGTA+AGG 0.524671 6:+87652531 None:intergenic
CCTGCAAATGGCTCTTAACA+TGG 0.525821 6:+87654715 None:intergenic
ACTCAAAGCAACTCTTGCGT+TGG 0.536955 6:-87655048 MsG0680034435.01.T01:CDS
GATGCTGTGGCTCAACTTCG+TGG 0.539483 6:-87654998 MsG0680034435.01.T01:CDS
TCTGAGGACACCTTTGGGTG+TGG 0.554653 6:+87654767 None:intergenic
AGACTGTTTCCTCCACTACC+AGG 0.568775 6:+87655091 None:intergenic
AAAGGAATGTTGAGACGGCT+AGG 0.570161 6:-87652573 MsG0680034435.01.T01:CDS
CTTTCTATGTGATGAAAATG+AGG 0.570487 6:-87653779 MsG0680034435.01.T01:CDS
TGGTAAGGCAATAAAAGCAT+CGG 0.590082 6:+87652546 None:intergenic
TTGTTAGACATGTCTATCAA+GGG 0.592908 6:-87653807 MsG0680034435.01.T01:CDS
CTATTGCTGATATGCATCAA+AGG 0.595185 6:-87652591 MsG0680034435.01.T01:CDS
GCGACTACATGAACAATTGG+AGG 0.598747 6:-87654059 MsG0680034435.01.T01:intron
AGATGAAGTTGTCTCAGTGA+TGG 0.599490 6:+87652004 None:intergenic
TGAACGCTTTGTTGATGCTG+TGG 0.601507 6:-87655011 MsG0680034435.01.T01:CDS
AGATTCTGGTAGAAGCGCAA+TGG 0.611720 6:-87655116 MsG0680034435.01.T01:CDS
AAGGAACTCACAGCAAACAA+AGG 0.620406 6:-87652046 MsG0680034435.01.T01:CDS
GCATCAAAGGAATGTTGAGA+CGG 0.630644 6:-87652578 MsG0680034435.01.T01:CDS
AGCACTAAAGCTTCAAATGG+AGG 0.632582 6:-87654089 MsG0680034435.01.T01:CDS
AGTTACGCTGAAAACACTAA+CGG 0.650890 6:+87653699 None:intergenic
GAAAATGAGGAAGAAAATGG+TGG 0.654354 6:-87653766 MsG0680034435.01.T01:CDS
GCAATGGATCCTGGTAGTGG+AGG 0.656586 6:-87655100 MsG0680034435.01.T01:CDS
GGGGAAAACACTCACGATCG+GGG 0.661843 6:+87654975 None:intergenic
GAACTCACAGCAAACAAAGG+GGG 0.695682 6:-87652043 MsG0680034435.01.T01:CDS
GGAACTCACAGCAAACAAAG+GGG 0.714311 6:-87652044 MsG0680034435.01.T01:CDS
CTTGTACACCCATAACTCTG+AGG 0.715783 6:+87654751 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG + Chr6:87652746-87652727 None:intergenic 0.0%
!! AAAGTTACCAATAAATTTAA+AGG + Chr6:87652842-87652861 None:intergenic 15.0%
!! AAGTTAAAATAAATACTCAA+AGG + Chr6:87654328-87654347 None:intergenic 15.0%
!! ACAAAAAAATATGAAAATGT+CGG + Chr6:87654845-87654864 None:intergenic 15.0%
!! AGTTAAAATAAATACTCAAA+GGG + Chr6:87654327-87654346 None:intergenic 15.0%
!! CACATAAAAAAATCTAAATA+TGG + Chr6:87652036-87652055 None:intergenic 15.0%
!!! ATATTTTTTTGTTGTTTACT+TGG - Chr6:87654853-87654872 MsG0680034435.01.T01:intron 15.0%
!!! CATATTTAGATTTTTTTATG+TGG - Chr6:87652034-87652053 MsG0680034435.01.T01:CDS 15.0%
!!! TAAAAAGTTATGTTTCTTTT+AGG - Chr6:87653009-87653028 MsG0680034435.01.T01:intron 15.0%
!! CATTACAAAAATGAGAATAA+TGG + Chr6:87652605-87652624 None:intergenic 20.0%
!! TAAATTTAAAGGAGAAAACA+AGG + Chr6:87652831-87652850 None:intergenic 20.0%
!!! AACTTTTTAATTGTCTATAG+AGG - Chr6:87652856-87652875 MsG0680034435.01.T01:intron 20.0%
!!! AATATTTTATGTCATTTTGC+AGG - Chr6:87653419-87653438 MsG0680034435.01.T01:intron 20.0%
!!! ACTTTTTAATTGTCTATAGA+GGG - Chr6:87652857-87652876 MsG0680034435.01.T01:intron 20.0%
!!! ATATTTTATGTCATTTTGCA+GGG - Chr6:87653420-87653439 MsG0680034435.01.T01:intron 20.0%
!!! GTTTTCTCCTTTAAATTTAT+TGG - Chr6:87652832-87652851 MsG0680034435.01.T01:intron 20.0%
!!! TAATTTGTCTAAGTTGTTAT+TGG - Chr6:87655071-87655090 MsG0680034435.01.T01:CDS 20.0%
!!! TGAAACAATTGTTTTTTCAA+AGG + Chr6:87654822-87654841 None:intergenic 20.0%
! AAAATAAATACTCAAAGGGA+TGG + Chr6:87654323-87654342 None:intergenic 25.0%
! AATAATGTTACATGTTTGCA+GGG - Chr6:87653133-87653152 MsG0680034435.01.T01:intron 25.0%
! ACAGTACAGTACAAAATAAT+AGG + Chr6:87654636-87654655 None:intergenic 25.0%
! AGAATGGTTAATACTTTAAG+CGG + Chr6:87652803-87652822 None:intergenic 25.0%
! CATACACAATTATTGAATTG+AGG + Chr6:87653853-87653872 None:intergenic 25.0%
! TAATAATGTTACATGTTTGC+AGG - Chr6:87653132-87653151 MsG0680034435.01.T01:intron 25.0%
! TGGGTTATCATAATTATACA+AGG - Chr6:87652958-87652977 MsG0680034435.01.T01:intron 25.0%
! TTGATGGAAAATGTATTCTT+TGG - Chr6:87654438-87654457 MsG0680034435.01.T01:intron 25.0%
!! AAGACAAACTCTAATTTTGT+AGG - Chr6:87655167-87655186 MsG0680034435.01.T01:CDS 25.0%
!! ATTTTCAGCTAACAGAAAAA+TGG + Chr6:87652310-87652329 None:intergenic 25.0%
!! CAGATATCTAATACTTTTGT+CGG - Chr6:87652368-87652387 MsG0680034435.01.T01:intron 25.0%
!! TTGTTTCGAAAAGTTTTTCA+TGG - Chr6:87653094-87653113 MsG0680034435.01.T01:intron 25.0%
!! TTTTCAGCTAACAGAAAAAT+GGG + Chr6:87652309-87652328 None:intergenic 25.0%
!!! ACATTTTTTGTTTCCATTCT+TGG - Chr6:87654159-87654178 MsG0680034435.01.T01:intron 25.0%
!!! ATTATTTTGTACTGTACTGT+AGG - Chr6:87654636-87654655 MsG0680034435.01.T01:intron 25.0%
!!! CTAATCTTATTTTCCAAGAA+TGG + Chr6:87654175-87654194 None:intergenic 25.0%
!!! CTTTTTAATTGTCTATAGAG+GGG - Chr6:87652858-87652877 MsG0680034435.01.T01:intron 25.0%
!!! GCTATAATTGTTTTTTCACT+TGG - Chr6:87655006-87655025 MsG0680034435.01.T01:CDS 25.0%
AAAAGACTGACAAGAAAGAA+TGG - Chr6:87652882-87652901 MsG0680034435.01.T01:intron 30.0%
AAAGAGCAGTCAGTATAAAT+AGG + Chr6:87654595-87654614 None:intergenic 30.0%
AATCACAACTGAATGAAAAC+AGG + Chr6:87654104-87654123 None:intergenic 30.0%
AATGGTCAACATATAGATTC+TGG - Chr6:87652131-87652150 MsG0680034435.01.T01:intron 30.0%
AGAAAACAAGGTGTAAAGAA+TGG + Chr6:87652819-87652838 None:intergenic 30.0%
AGGAATCAAACAATGAGATA+TGG + Chr6:87654802-87654821 None:intergenic 30.0%
ATAATGTTACATGTTTGCAG+GGG - Chr6:87653134-87653153 MsG0680034435.01.T01:intron 30.0%
ATTGTTAGACATGTCTATCA+AGG - Chr6:87653453-87653472 MsG0680034435.01.T01:intron 30.0%
CTTTCTATGTGATGAAAATG+AGG - Chr6:87653482-87653501 MsG0680034435.01.T01:intron 30.0%
GAAAATGTAATGCGTAGAAT+TGG - Chr6:87652324-87652343 MsG0680034435.01.T01:intron 30.0%
GATGAAAATGAGGAAGAAAA+TGG - Chr6:87653492-87653511 MsG0680034435.01.T01:intron 30.0%
GGAAGCAATCTATTAGTTAA+TGG - Chr6:87652113-87652132 MsG0680034435.01.T01:intron 30.0%
GTACATATTAAAGTAGATCG+AGG - Chr6:87654382-87654401 MsG0680034435.01.T01:intron 30.0%
TACATAAGATCATAAGACCT+GGG - Chr6:87654476-87654495 MsG0680034435.01.T01:intron 30.0%
TAGTTAACACTAATGCTAAC+AGG + Chr6:87652987-87653006 None:intergenic 30.0%
TGTGAGTTCCTTTCAAAAAT+CGG + Chr6:87655207-87655226 None:intergenic 30.0%
TTACATAAGATCATAAGACC+TGG - Chr6:87654475-87654494 MsG0680034435.01.T01:intron 30.0%
TTACTCATTGATCTATACTC+AGG - Chr6:87653661-87653680 MsG0680034435.01.T01:intron 30.0%
TTGTTAGACATGTCTATCAA+GGG - Chr6:87653454-87653473 MsG0680034435.01.T01:intron 30.0%
TTTCAGCTAACAGAAAAATG+GGG + Chr6:87652308-87652327 None:intergenic 30.0%
! GTTTTCATTCAGTTGTGATT+TGG - Chr6:87654104-87654123 MsG0680034435.01.T01:intron 30.0%
! TAATGGATGTCACATTAAGA+GGG + Chr6:87652588-87652607 None:intergenic 30.0%
! TTGTCTAAGTTGTTATTGGT+TGG - Chr6:87655075-87655094 MsG0680034435.01.T01:CDS 30.0%
!! ATAATGGATGTCACATTAAG+AGG + Chr6:87652589-87652608 None:intergenic 30.0%
!! ATGATAGACCGATTTTTGAA+AGG - Chr6:87655196-87655215 MsG0680034435.01.T01:exon 30.0%
!! TTTCGATGCTTATTTTCGAA+TGG - Chr6:87653349-87653368 MsG0680034435.01.T01:intron 30.0%
!!! CTATAGATTTTTTCCACCAA+CGG + Chr6:87653052-87653071 None:intergenic 30.0%
!!! TATAGATTTTTTCCACCAAC+GGG + Chr6:87653051-87653070 None:intergenic 30.0%
!!! TGGTTGCTTTTTAGACATAA+TGG - Chr6:87654873-87654892 MsG0680034435.01.T01:intron 30.0%
AAATCAGATTGACGTACCAT+CGG + Chr6:87652694-87652713 None:intergenic 35.0%
AATTAGGATAGGTCCATTGA+TGG - Chr6:87653925-87653944 MsG0680034435.01.T01:intron 35.0%
AATTTCATGGAGCAATGGTA+AGG + Chr6:87654527-87654546 None:intergenic 35.0%
ACAGGCATAATCAAAGCTAA+CGG + Chr6:87654086-87654105 None:intergenic 35.0%
AGTTACGCTGAAAACACTAA+CGG + Chr6:87653565-87653584 None:intergenic 35.0%
ATACTCAAAGGGATGGAAAA+AGG + Chr6:87654316-87654335 None:intergenic 35.0%
ATGATAACCCAAGAGCAAAA+GGG + Chr6:87652949-87652968 None:intergenic 35.0%
ATGGCTCTTAACATGGTAAA+TGG + Chr6:87652542-87652561 None:intergenic 35.0%
ATTAGGATAGGTCCATTGAT+GGG - Chr6:87653926-87653945 MsG0680034435.01.T01:intron 35.0%
CAAAGTTAAAAGACGTGTCT+AGG + Chr6:87653804-87653823 None:intergenic 35.0%
CTATTGCTGATATGCATCAA+AGG - Chr6:87654670-87654689 MsG0680034435.01.T01:intron 35.0%
CTGTACTGTAGGTTAAGTTA+AGG - Chr6:87654647-87654666 MsG0680034435.01.T01:intron 35.0%
GAAAATGAGGAAGAAAATGG+TGG - Chr6:87653495-87653514 MsG0680034435.01.T01:intron 35.0%
GAGGGAGTCTAAATATTGTA+AGG - Chr6:87654498-87654517 MsG0680034435.01.T01:intron 35.0%
GATATGCTTTCCATTCTAGA+TGG - Chr6:87652904-87652923 MsG0680034435.01.T01:intron 35.0%
GGAGAAAATATGCAACAAAC+TGG + Chr6:87654037-87654056 None:intergenic 35.0%
GTTCTCAGTGTTTGTAACAA+AGG + Chr6:87653619-87653638 None:intergenic 35.0%
TAATGTTACATGTTTGCAGG+GGG - Chr6:87653135-87653154 MsG0680034435.01.T01:intron 35.0%
TAGATCAGATCAGTTCAACA+AGG + Chr6:87653235-87653254 None:intergenic 35.0%
TATGATAACCCAAGAGCAAA+AGG + Chr6:87652950-87652969 None:intergenic 35.0%
TCAGTGTTTGTAACAAAGGA+GGG + Chr6:87653615-87653634 None:intergenic 35.0%
! AAATGTTGCTGTGTTTTGTG+GGG - Chr6:87654940-87654959 MsG0680034435.01.T01:intron 35.0%
! CAAATGTTGCTGTGTTTTGT+GGG - Chr6:87654939-87654958 MsG0680034435.01.T01:intron 35.0%
! CAGGTAAGTATTTTGCTTGT+TGG + Chr6:87652662-87652681 None:intergenic 35.0%
! TGAAGCACTAAAGCTTCAAA+TGG - Chr6:87653169-87653188 MsG0680034435.01.T01:intron 35.0%
! TGAGTTGAGATTAGAGTTGT+TGG + Chr6:87652198-87652217 None:intergenic 35.0%
! TGCTTGTTGGTATTTCTGTA+TGG + Chr6:87652649-87652668 None:intergenic 35.0%
! TGGTAAGGCAATAAAAGCAT+CGG + Chr6:87654718-87654737 None:intergenic 35.0%
! TGTTTTCAGCGTAACTAGAA+AGG - Chr6:87653569-87653588 MsG0680034435.01.T01:intron 35.0%
!!! CTAGACACGTCTTTTAACTT+TGG - Chr6:87653802-87653821 MsG0680034435.01.T01:CDS 35.0%
AAAACTAACCCTACAAGCAG+CGG + Chr6:87653955-87653974 None:intergenic 40.0%
AAAAGACGTGTCTAGGAGTA+GGG + Chr6:87653797-87653816 None:intergenic 40.0%
AAGGAACTCACAGCAAACAA+AGG - Chr6:87655215-87655234 MsG0680034435.01.T01:five_prime_UTR 40.0%
AAGTGCACATTACCTGCAAA+TGG + Chr6:87652561-87652580 None:intergenic 40.0%
AATTGCATGCTAACCTGGTA+AGG + Chr6:87654733-87654752 None:intergenic 40.0%
ACAAGTCTGCCTCAATTTCA+TGG + Chr6:87654540-87654559 None:intergenic 40.0%
ACACAAATTGCATGCTAACC+TGG + Chr6:87654738-87654757 None:intergenic 40.0%
ACCATTGCTCCATGAAATTG+AGG - Chr6:87654528-87654547 MsG0680034435.01.T01:intron 40.0%
ACGGTTGAACTTCAGTAGAA+AGG + Chr6:87654067-87654086 None:intergenic 40.0%
ACTATCCTTTCCTTTCCCTT+AGG - Chr6:87652469-87652488 MsG0680034435.01.T01:intron 40.0%
AGATCGAGGAAACTGCAATT+AGG - Chr6:87654396-87654415 MsG0680034435.01.T01:intron 40.0%
AGCACTAAAGCTTCAAATGG+AGG - Chr6:87653172-87653191 MsG0680034435.01.T01:intron 40.0%
AGGAACTCACAGCAAACAAA+GGG - Chr6:87655216-87655235 MsG0680034435.01.T01:five_prime_UTR 40.0%
ATAAGATCATAAGACCTGGG+AGG - Chr6:87654479-87654498 MsG0680034435.01.T01:intron 40.0%
ATTGTGTATGCAGTTAACCG+TGG - Chr6:87653863-87653882 MsG0680034435.01.T01:intron 40.0%
CACTCTCAACAAAAAAGCCA+TGG - Chr6:87653738-87653757 MsG0680034435.01.T01:CDS 40.0%
CAGACCTTGAGAATTAGGAT+AGG - Chr6:87653914-87653933 MsG0680034435.01.T01:intron 40.0%
CCACAAAACACAGCAACATT+TGG + Chr6:87654941-87654960 None:intergenic 40.0%
CCTTTCAGTCTGATATGTCA+CGG - Chr6:87654351-87654370 MsG0680034435.01.T01:intron 40.0%
CTATCCTAATTCTCAAGGTC+TGG + Chr6:87653916-87653935 None:intergenic 40.0%
CTCAGTGTTTGTAACAAAGG+AGG + Chr6:87653616-87653635 None:intergenic 40.0%
CTTCAGTAGAAAGGCAAAAG+CGG + Chr6:87654058-87654077 None:intergenic 40.0%
GAAGCGACTACATGAACAAT+TGG - Chr6:87653199-87653218 MsG0680034435.01.T01:intron 40.0%
GAGGAAACTGCAATTAGGTT+TGG - Chr6:87654401-87654420 MsG0680034435.01.T01:intron 40.0%
GCATCAAAGGAATGTTGAGA+CGG - Chr6:87654683-87654702 MsG0680034435.01.T01:intron 40.0%
GGACTTGTAACTAGACTTGA+TGG - Chr6:87654422-87654441 MsG0680034435.01.T01:intron 40.0%
TAAAAGACGTGTCTAGGAGT+AGG + Chr6:87653798-87653817 None:intergenic 40.0%
TAAGATCATAAGACCTGGGA+GGG - Chr6:87654480-87654499 MsG0680034435.01.T01:intron 40.0%
TATACTCAGGATAGTGAACC+AGG - Chr6:87653674-87653693 MsG0680034435.01.T01:intron 40.0%
TCACGATGAACCATCTAGAA+TGG + Chr6:87652917-87652936 None:intergenic 40.0%
TGGACCTATCCTAATTCTCA+AGG + Chr6:87653921-87653940 None:intergenic 40.0%
TTGAGGCAGACTTGTATTAC+TGG - Chr6:87654545-87654564 MsG0680034435.01.T01:intron 40.0%
TTGCAGGTAATGTGCACTTT+AGG - Chr6:87652562-87652581 MsG0680034435.01.T01:CDS 40.0%
TTGTGTATGCAGTTAACCGT+GGG - Chr6:87653864-87653883 MsG0680034435.01.T01:intron 40.0%
TTTGCCAGACCTTGAGAATT+AGG - Chr6:87653909-87653928 MsG0680034435.01.T01:intron 40.0%
TTTGTTGAGAGTGGTGATCT+TGG + Chr6:87653731-87653750 None:intergenic 40.0%
! ATAACTCTGAGGACACCTTT+GGG + Chr6:87652502-87652521 None:intergenic 40.0%
! ATAGCTTCCCTTTTGCTCTT+GGG - Chr6:87652939-87652958 MsG0680034435.01.T01:intron 40.0%
! CCAAATGTTGCTGTGTTTTG+TGG - Chr6:87654938-87654957 MsG0680034435.01.T01:intron 40.0%
! GATGCTTTTATTGCCTTACC+AGG - Chr6:87654717-87654736 MsG0680034435.01.T01:CDS 40.0%
! TATAGCTTCCCTTTTGCTCT+TGG - Chr6:87652938-87652957 MsG0680034435.01.T01:intron 40.0%
!! AAAGGTGTCCTCAGAGTTAT+GGG - Chr6:87652502-87652521 MsG0680034435.01.T01:intron 40.0%
!! GTCATTTTGCAGGGTAAACA+AGG - Chr6:87653429-87653448 MsG0680034435.01.T01:intron 40.0%
!! GTTGCTGATTCGAGTTTAGT+TGG - Chr6:87652092-87652111 MsG0680034435.01.T01:intron 40.0%
!!! CATGGCTTTTTTGTTGAGAG+TGG + Chr6:87653740-87653759 None:intergenic 40.0%
AAAGGAATGTTGAGACGGCT+AGG - Chr6:87654688-87654707 MsG0680034435.01.T01:intron 45.0%
ACTCAAAGCAACTCTTGCGT+TGG - Chr6:87652213-87652232 MsG0680034435.01.T01:intron 45.0%
ATAAGCTATCACTGTCCCCA+CGG + Chr6:87653883-87653902 None:intergenic 45.0%
ATGGGGAAAACACTCACGAT+CGG + Chr6:87652291-87652310 None:intergenic 45.0%
ATTCAATGCCTCAAACCCGT+TGG - Chr6:87653033-87653052 MsG0680034435.01.T01:intron 45.0%
CAATATTTAGACTCCCTCCC+AGG + Chr6:87654496-87654515 None:intergenic 45.0%
CCATGTTAAGAGCCATTTGC+AGG - Chr6:87652546-87652565 MsG0680034435.01.T01:CDS 45.0%
CCGTGACATATCAGACTGAA+AGG + Chr6:87654354-87654373 None:intergenic 45.0%
CCTGCAAATGGCTCTTAACA+TGG + Chr6:87652549-87652568 None:intergenic 45.0%
CTCAGAGTTATGGGTGTACA+AGG - Chr6:87652511-87652530 MsG0680034435.01.T01:intron 45.0%
CTCGAATCAGCAACATTCGT+TGG + Chr6:87652086-87652105 None:intergenic 45.0%
CTTGTACACCCATAACTCTG+AGG + Chr6:87652513-87652532 None:intergenic 45.0%
GAACTCACAGCAAACAAAGG+GGG - Chr6:87655218-87655237 MsG0680034435.01.T01:five_prime_UTR 45.0%
GCCTCAATTTCATGGAGCAA+TGG + Chr6:87654532-87654551 None:intergenic 45.0%
GCGACTACATGAACAATTGG+AGG - Chr6:87653202-87653221 MsG0680034435.01.T01:intron 45.0%
GGAACTCACAGCAAACAAAG+GGG - Chr6:87655217-87655236 MsG0680034435.01.T01:five_prime_UTR 45.0%
TCGTCAAAGACTAAAGGACC+TGG + Chr6:87653695-87653714 None:intergenic 45.0%
TGTGTATGCAGTTAACCGTG+GGG - Chr6:87653865-87653884 MsG0680034435.01.T01:intron 45.0%
TTATACCTGCATCCTGCAGT+TGG - Chr6:87654235-87654254 MsG0680034435.01.T01:intron 45.0%
! AGATTCTGGTAGAAGCGCAA+TGG - Chr6:87652145-87652164 MsG0680034435.01.T01:intron 45.0%
! CATAACTCTGAGGACACCTT+TGG + Chr6:87652503-87652522 None:intergenic 45.0%
! GGTTGGTCGTCAAAGACTAA+AGG + Chr6:87653701-87653720 None:intergenic 45.0%
! TCCTTTTCTTTCGCTTGCCA+TGG + Chr6:87653758-87653777 None:intergenic 45.0%
! TGAACGCTTTGTTGATGCTG+TGG - Chr6:87652250-87652269 MsG0680034435.01.T01:intron 45.0%
!! AGTGGTGATCTTGGTGATGA+TGG + Chr6:87653722-87653741 None:intergenic 45.0%
!! CAAAGGTGTCCTCAGAGTTA+TGG - Chr6:87652501-87652520 MsG0680034435.01.T01:intron 45.0%
!! GTGATCTTGGTGATGATGGT+TGG + Chr6:87653718-87653737 None:intergenic 45.0%
!! TTTTTCCACCAACGGGTTTG+AGG + Chr6:87653044-87653063 None:intergenic 45.0%
!! TTTATATATGAATTTAATTA+AGG - Chr6:87655098-87655117 MsG0680034435.01.T01:CDS 5.0%
!!! AAAATATTTTAAAAATATCA+AGG + Chr6:87653407-87653426 None:intergenic 5.0%
!!! AAATTAAATTTTTTTAGATA+AGG + Chr6:87652440-87652459 None:intergenic 5.0%
AAGCAGCGGTATCCCATCAA+TGG + Chr6:87653941-87653960 None:intergenic 50.0%
AGACTGTTTCCTCCACTACC+AGG + Chr6:87652173-87652192 None:intergenic 50.0%
ATGGGATACCGCTGCTTGTA+GGG - Chr6:87653944-87653963 MsG0680034435.01.T01:intron 50.0%
CATCATGACCTACCAACTGC+AGG + Chr6:87654250-87654269 None:intergenic 50.0%
GCCATGGCAAGCGAAAGAAA+AGG - Chr6:87653754-87653773 MsG0680034435.01.T01:CDS 50.0%
TGGCACCTAAGGGAAAGGAA+AGG + Chr6:87652477-87652496 None:intergenic 50.0%
TGGGGAAAACACTCACGATC+GGG + Chr6:87652290-87652309 None:intergenic 50.0%
TTACCTGACTGCTCATCCGA+TGG - Chr6:87652675-87652694 MsG0680034435.01.T01:intron 50.0%
ACCTACCAACTGCAGGATGC+AGG + Chr6:87654243-87654262 None:intergenic 55.0%
ACCTGCATCCTGCAGTTGGT+AGG - Chr6:87654239-87654258 MsG0680034435.01.T01:intron 55.0%
ACCTTTGGGTGTGGCACCTA+AGG + Chr6:87652488-87652507 None:intergenic 55.0%
AGCGCAATGGATCCTGGTAG+TGG - Chr6:87652158-87652177 MsG0680034435.01.T01:intron 55.0%
CAATGCCTCAAACCCGTTGG+TGG - Chr6:87653036-87653055 MsG0680034435.01.T01:intron 55.0%
CCTTTGGGTGTGGCACCTAA+GGG + Chr6:87652487-87652506 None:intergenic 55.0%
GATGCTGTGGCTCAACTTCG+TGG - Chr6:87652263-87652282 MsG0680034435.01.T01:intron 55.0%
GATGGGATACCGCTGCTTGT+AGG - Chr6:87653943-87653962 MsG0680034435.01.T01:intron 55.0%
GGGGAAAACACTCACGATCG+GGG + Chr6:87652289-87652308 None:intergenic 55.0%
GTACCATCGGATGAGCAGTC+AGG + Chr6:87652681-87652700 None:intergenic 55.0%
TCTGAGGACACCTTTGGGTG+TGG + Chr6:87652497-87652516 None:intergenic 55.0%
! GGTAGAAGCGCAATGGATCC+TGG - Chr6:87652152-87652171 MsG0680034435.01.T01:intron 55.0%
!! GCAATGGATCCTGGTAGTGG+AGG - Chr6:87652161-87652180 MsG0680034435.01.T01:intron 55.0%
GGGTGTGGCACCTAAGGGAA+AGG + Chr6:87652482-87652501 None:intergenic 60.0%
! CCCTTAGGTGCCACACCCAA+AGG - Chr6:87652484-87652503 MsG0680034435.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 87652017 87655266 87652017 ID=MsG0680034435.01;Name=MsG0680034435.01
Chr6 mRNA 87652017 87655266 87652017 ID=MsG0680034435.01.T01;Parent=MsG0680034435.01;Name=MsG0680034435.01.T01;_AED=0.33;_eAED=0.33;_QI=57|0.4|0.5|1|1|1|6|0|217
Chr6 exon 87652017 87652094 87652017 ID=MsG0680034435.01.T01:exon:13418;Parent=MsG0680034435.01.T01
Chr6 exon 87652545 87652625 87652545 ID=MsG0680034435.01.T01:exon:13417;Parent=MsG0680034435.01.T01
Chr6 exon 87653705 87653842 87653705 ID=MsG0680034435.01.T01:exon:13416;Parent=MsG0680034435.01.T01
Chr6 exon 87654060 87654119 87654060 ID=MsG0680034435.01.T01:exon:13415;Parent=MsG0680034435.01.T01
Chr6 exon 87654716 87654792 87654716 ID=MsG0680034435.01.T01:exon:13414;Parent=MsG0680034435.01.T01
Chr6 exon 87654990 87655266 87654990 ID=MsG0680034435.01.T01:exon:13413;Parent=MsG0680034435.01.T01
Chr6 five_prime_UTR 87655210 87655266 87655210 ID=MsG0680034435.01.T01:five_prime_utr;Parent=MsG0680034435.01.T01
Chr6 CDS 87654990 87655209 87654990 ID=MsG0680034435.01.T01:cds;Parent=MsG0680034435.01.T01
Chr6 CDS 87654716 87654792 87654716 ID=MsG0680034435.01.T01:cds;Parent=MsG0680034435.01.T01
Chr6 CDS 87654060 87654119 87654060 ID=MsG0680034435.01.T01:cds;Parent=MsG0680034435.01.T01
Chr6 CDS 87653705 87653842 87653705 ID=MsG0680034435.01.T01:cds;Parent=MsG0680034435.01.T01
Chr6 CDS 87652545 87652625 87652545 ID=MsG0680034435.01.T01:cds;Parent=MsG0680034435.01.T01
Chr6 CDS 87652017 87652094 87652017 ID=MsG0680034435.01.T01:cds;Parent=MsG0680034435.01.T01
Gene Sequence

>MsG0680034435.01.T01

ATGTATCATCCAACGAATGTTGCTGATTCGAGTTTAGTTGGAAGCAATCTATTAGTTAATGGTCAACATATAGATTCTGGTAGAAGCGCAATGGATCCTGGTAGTGGAGGAAACAGTCTTGCCAACAACTCTAATCTCAACTCAAAGCAACTCTTGCGTTGGACACATGAGCTACATGAACGCTTTGTTGATGCTGTGGCTCAACTTCGTGGCCCCGATCGTGCCACACCCAAAGGTGTCCTCAGAGTTATGGGTGTACAAGGCTTAACCATTTACCATGTTAAGAGCCATTTGCAGATTACTGAAGCACTAAAGCTTCAAATGGAGGTACAGAAGCGACTACATGAACAATTGGAGGGTAAACAAGGCATTGTTAGACATGTCTATCAAGGGATTGTCTTTCTATGTGATGAAAATGAGGAAGAAAATGGTGGCTACGTCATAGCTAAAGCTATTATGTGTGAGAAAGTCAAGCTTGCCGTTAGTGTTTTCAGCGTTAAGTTAAGGCTATTGCTGATATGCATCAAAGGAATGTTGAGACGGCTAGGCATTCCGATGCTTTTATTGCCTTACCAGGATGAATATGATAGACCGATTTTTGAAAGGAACTCACAGCAAACAAAGGGGGATGATGTGTCTACTGACCATCACTGA
Protein sequence

>MsG0680034435.01.T01

MYHPTNVADSSLVGSNLLVNGQHIDSGRSAMDPGSGGNSLANNSNLNSKQLLRWTHELHERFVDAVAQLRGPDRATPKGVLRVMGVQGLTIYHVKSHLQITEALKLQMEVQKRLHEQLEGKQGIVRHVYQGIVFLCDENEEENGGYVIAKAIMCEKVKLAVSVFSVKLRLLLICIKGMLRRLGIPMLLLPYQDEYDRPIFERNSQQTKGDDVSTDHH*