AlfalfaGEDB | MsG0680035203.01

M. sativa cultivar ZhongmuNo.1 / MsG0680035203.01

KEGG: -
GO: GO:0005515 GO:0007165 GO:0043531
PFAM: PF00931 PF01582 PF12799 PF16679

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035203.01.T01	XP_039682513.1	77.703	1184	218	9	258	1427	17	1168	0	1701
MsG0680035203.01.T01	XP_039682513.1	67.316	462	123	4	999	1434	669	1128	8.89E-163	542
MsG0680035203.01.T01	XP_039682513.1	43.636	440	92	8	906	1205	762	1185	7.20E-68	266

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035203.01.T01	O23530	31.492	1213	699	37	258	1422	26	1154	1.70E-126	433

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
MsG0380015891.01	MsG0680035203.01	PPI
MsG0680035203.01	MsG0280011163.01	PPI
MsG0880042627.01	MsG0680035203.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035203.01.T01	MTR_6g078930	77.513	1174	208	9	258	1427	17	1138	0.0	1678
MsG0680035203.01.T01	MTR_6g078930	65.756	476	135	4	999	1448	639	1112	3.83e-166	541
MsG0680035203.01.T01	MTR_6g078930	43.636	440	92	8	906	1205	732	1155	1.56e-71	265
MsG0680035203.01.T01	MTR_3g006280	62.668	1267	312	15	258	1427	15	1217	0.0	1321
MsG0680035203.01.T01	MTR_3g006280	49.136	521	162	7	1025	1442	618	1138	6.01e-101	357
MsG0680035203.01.T01	MTR_3g006280	45.890	438	136	7	1088	1450	638	1049	7.29e-76	279
MsG0680035203.01.T01	MTR_3g006280	43.720	414	172	10	824	1205	850	1234	3.94e-58	222
MsG0680035203.01.T01	MTR_6g079000	56.036	1342	395	16	258	1445	17	1317	0.0	1266
MsG0680035203.01.T01	MTR_6g079000	49.259	607	197	9	906	1427	813	1393	1.70e-127	437
MsG0680035203.01.T01	MTR_6g079000	45.437	526	210	10	847	1311	908	1417	7.37e-94	337

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035203.01.T01	AT5G17680	32.108	1143	653	32	257	1379	22	1061	2.88e-132	444
MsG0680035203.01.T01	AT5G17680	32.808	317	185	16	1078	1382	573	873	7.16e-16	84.3
MsG0680035203.01.T01	AT5G17680	28.832	274	140	10	1182	1427	625	871	3.21e-14	79.0
MsG0680035203.01.T01	AT5G17680	32.108	1143	652	33	257	1379	22	1060	2.51e-131	441
MsG0680035203.01.T01	AT5G17680	32.808	317	185	16	1078	1382	572	872	7.03e-16	84.3
MsG0680035203.01.T01	AT5G17680	28.832	274	140	10	1182	1427	624	870	3.11e-14	79.0
MsG0680035203.01.T01	AT4G16890	31.162	1213	703	35	258	1422	17	1145	1.46e-127	433
MsG0680035203.01.T01	AT4G16890	35.455	330	182	15	1113	1427	612	925	3.32e-25	115
MsG0680035203.01.T01	AT4G16890	31.492	1213	699	37	258	1422	26	1154	1.73e-127	433
MsG0680035203.01.T01	AT4G16890	35.455	330	182	15	1113	1427	621	934	2.91e-25	115

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Find 292 sgRNAs with CRISPR-Local

Find 734 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAACTTCAATCACAAG+AGG	0.584705	6:-100520476	MsG0680035203.01.T01:CDS
AAAAGCAATGGCTAAACATG+AGG	0.622082	6:-100526670	MsG0680035203.01.T01:CDS
AAAATATGGAAGAGAATTAA+TGG	0.275418	6:-100524689	MsG0680035203.01.T01:CDS
AAACCTATTGTCTTACATGC+TGG	0.537138	6:-100525285	MsG0680035203.01.T01:CDS
AAAGCAATGGCTAAACATGA+GGG	0.651119	6:-100526669	MsG0680035203.01.T01:CDS
AAATAGTTATGGAAAAGCAA+TGG	0.632162	6:-100526682	MsG0680035203.01.T01:CDS
AACAACCCATCCACCACGCC+TGG	0.438158	6:+100522100	None:intergenic
AACAACCCATCCTCCACGCC+TGG	0.483822	6:+100521686	None:intergenic
AACAGGAAATTTGAAATTGA+TGG	0.346066	6:+100525112	None:intergenic
AACATGAGGGTCGGTGTTGC+TGG	0.316954	6:-100526656	MsG0680035203.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACACCATGATAGATTTC+AGG	-	Chr6:100521709-100521728	MsG0680035203.01.T01:CDS	30.0%
AAAAGAACTTCAATCACAAG+AGG	-	Chr6:100532989-100533008	MsG0680035203.01.T01:CDS	30.0%
AAAGAAAAGCAGTTGTCAAA+AGG	+	Chr6:100523232-100523251	None:intergenic	30.0%
AAAGTTCCTAAAAAAAGTGG+GGG	-	Chr6:100527981-100528000	MsG0680035203.01.T01:intron	30.0%
AAATTGAGACCAAAACAAGA+TGG	+	Chr6:100532296-100532315	None:intergenic	30.0%
AACATGAACTACTAAATGTC+AGG	+	Chr6:100524031-100524050	None:intergenic	30.0%
AAGAACTTCAATCACAAAAG+AGG	-	Chr6:100524702-100524721	MsG0680035203.01.T01:CDS	30.0%
AATAAGCATAATTCTCAGAG+AGG	+	Chr6:100526651-100526670	None:intergenic	30.0%
AATTATGGGGAAAACATAAG+CGG	-	Chr6:100527956-100527975	MsG0680035203.01.T01:intron	30.0%
ACAAAGTTAGTCAATCCTTA+TGG	+	Chr6:100522034-100522053	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	100520427	100533060	100520427	ID=MsG0680035203.01;Name=MsG0680035203.01
Chr6	mRNA	100520427	100533060	100520427	ID=MsG0680035203.01.T01;Parent=MsG0680035203.01;Name=MsG0680035203.01.T01;_AED=0.18;_eAED=0.19;_QI=0\|0.1\|0\|0.90\|1\|1\|11\|0\|1555
Chr6	exon	100532915	100533060	100532915	ID=MsG0680035203.01.T01:exon:10352;Parent=MsG0680035203.01.T01
Chr6	exon	100532717	100532774	100532717	ID=MsG0680035203.01.T01:exon:10351;Parent=MsG0680035203.01.T01
Chr6	exon	100530466	100530747	100530466	ID=MsG0680035203.01.T01:exon:10350;Parent=MsG0680035203.01.T01
Chr6	exon	100528715	100528916	100528715	ID=MsG0680035203.01.T01:exon:10349;Parent=MsG0680035203.01.T01
Chr6	exon	100528547	100528631	100528547	ID=MsG0680035203.01.T01:exon:10348;Parent=MsG0680035203.01.T01
Chr6	exon	100526576	100527004	100526576	ID=MsG0680035203.01.T01:exon:10347;Parent=MsG0680035203.01.T01
Chr6	exon	100524189	100525365	100524189	ID=MsG0680035203.01.T01:exon:10346;Parent=MsG0680035203.01.T01
Chr6	exon	100523301	100523564	100523301	ID=MsG0680035203.01.T01:exon:10345;Parent=MsG0680035203.01.T01
Chr6	exon	100521577	100523208	100521577	ID=MsG0680035203.01.T01:exon:10344;Parent=MsG0680035203.01.T01
Chr6	exon	100521200	100521391	100521200	ID=MsG0680035203.01.T01:exon:10343;Parent=MsG0680035203.01.T01
Chr6	exon	100520427	100520627	100520427	ID=MsG0680035203.01.T01:exon:10342;Parent=MsG0680035203.01.T01
Chr6	CDS	100532915	100533060	100532915	ID=MsG0680035203.01.T01:cds;Parent=MsG0680035203.01.T01
Chr6	CDS	100532717	100532774	100532717	ID=MsG0680035203.01.T01:cds;Parent=MsG0680035203.01.T01
Chr6	CDS	100530466	100530747	100530466	ID=MsG0680035203.01.T01:cds;Parent=MsG0680035203.01.T01
Chr6	CDS	100528715	100528916	100528715	ID=MsG0680035203.01.T01:cds;Parent=MsG0680035203.01.T01
Chr6	CDS	100528547	100528631	100528547	ID=MsG0680035203.01.T01:cds;Parent=MsG0680035203.01.T01
Chr6	CDS	100526576	100527004	100526576	ID=MsG0680035203.01.T01:cds;Parent=MsG0680035203.01.T01
Chr6	CDS	100524189	100525365	100524189	ID=MsG0680035203.01.T01:cds;Parent=MsG0680035203.01.T01
Chr6	CDS	100523301	100523564	100523301	ID=MsG0680035203.01.T01:cds;Parent=MsG0680035203.01.T01
Chr6	CDS	100521577	100523208	100521577	ID=MsG0680035203.01.T01:cds;Parent=MsG0680035203.01.T01
Chr6	CDS	100521200	100521391	100521200	ID=MsG0680035203.01.T01:cds;Parent=MsG0680035203.01.T01
Chr6	CDS	100520427	100520627	100520427	ID=MsG0680035203.01.T01:cds;Parent=MsG0680035203.01.T01

Gene Sequence

>MsG0680035203.01.T01

ATGTTGCAAAGGTTGTCAATTATTGATGGAACTTGTTCAGATGCAGTGGCTATTCCACCCGTGGTGGATGGGTTACTTTATAAACTTAAAATCTTAAGAGTTGCATGTTGTCCGAAGCTTAGTGCTATTGCACCACTCAAACTGGGAACTTCTAACCTCACCACAGTGAAAGGGGGAATGGCTATTCCCAAAATAGGAAACGAGGTAACCCAACCCGACCCTTATTTCAATTATGTCCCTATTCTATCCCATATTGATAAGAAGAGCTTGTGTATGAAGCCTGATTTGAAGACCACCTTGGCATTTGAAGTTGCAGAAGATAGCTTCGAACAGTCTGCTGATTTGTCTCTTATTCGATATTTTAATTCCAGGCTGATGAATTTCTCTAATCTGCATCCTGAAGTAACATTTTTTGATTTAAGGGTGTTACTCTTGTTAATTGTATTCTCTGTATTTACCGCAGAAATTTATCCTATCTTAACAGTGGTGGATGAGAGCCTTAGTCATTCTTTTCAGAAAATCAATGTAGATCAACATTGTTTGGATGCATCGGATAACAATCCTTCATCATCGGTGGAACTGGTTAATGTTATTGACTCTATATTTGACTCTGTCAAAAGAACTTCAATCACAAAAGAGGAGCTCTTGCAAAAGATAATGATGAACTGTTTAGATTTTGTTGAAATTAGAGAAGCTGAAGAACATATTGAGATTTTGGAAAAGACTGTGCCAGACTGGCTTTGCAAGAAGGTGGTTTCTTCTGGAGACACTACCTTTCGAGGTGAGGATACTCGCTATGGTTTCACTGGCAATCTGAAGAAAGCTCTTGATGACAAAGGAGTAAAAACTTTCATGGATGAAAAGGATCTTCTAAAAGGTGAAGAAATCACACCATCACTTCTCAAAGCAATTGAAGACTCCAACATGGCCATAGTTGTCCTCTCTGAGAATTATGCTTATTCATCCTTTTGCTTACAAGAACTTTCTCATATCCTTCATTCCATCAACGATAGGGGTCGGTGTGTCCATCCGGTATTTTATAAGGTAGATCCTTCTGATGTACGAAAATTGAGAAATAGTTATGGAAAAGCAATGGCTAAACATGAGGGTCGGTGTTGCTGGCCGGTATCCAACCCTAACGTGGATAAATGGAAGGCTTCTCTTCACCAAGTTGCTAATTTATCCGGCTCTCATTACAAAGGGGATGAGTATGAATTTGACTTTATTAAGAAGATTGTTCATCAAATCTTAAGAAATACAAAACCTATTGTCTTACATGCTGGTGATTACCTAGTTGGACTGGAGCACCAAAAACAATACTTGACTTCACTTTTGAATATTGGGTCTGATGCTACTATCCACATGGTCGGGATCCATGGGATCGGCGGAATAGGGAAAACTACTCTCGCTCTTGAAGTTTATAATTTGATCGTCCATCAATTTCAAATTTCCTGTTTTCTTGAAAAAGTCAGAGAAAATTCCAACAGAAATGGGTTGATTTATCTCCAAAAGATCCTTTTGTCTCGAATTGTTGGAGAGGAGAACATGGAGTTTACAAGCGTTGCAGAAGGAATTTCAATATTACAACAAAGGCTCCACCAAAAGAAGGTTCTTTTGCTTCTAGACGATGTTGACAATTTGGAACAATTAGAGGCCATTGCTGGAAGATCTAAATGGTTTGGTCCAGGCAGTAGAGTCATCATTACGACTCGAGACATAAGGTTATTAACAAGGCATGAGGTTGAAAGAACATATGAGGTGATGGGATTGAATGATGAAGATGCTTTTGACTTGGTGGGAAGGAAAGCTTTAAAAAACGAATATAGTTCAAGCTTAAAAGATATTTTATCAATACAAAAATATGGAAGAGAATTAATGGATTTGAATGTCAGAGTTTTTCCAGGTTATGCACATGTTTTAAAACGTGCTGTAGCATATGCTTCTGGCCTTCCACTCGCTTTGGAGGTCATAGGTTCTCACTTTTTTAAGAAGACAATAGAGGAATGTAAATGTGCACTAGATCGTTATGAAAGGGTTCCTGATAAAAAGATCCAAACGACACTACAGTTGAGCTTTGATGCTTTGCGGGAAGAAGAAAAATTTGTTTTTCTTGACATTGCTTGTTGCTTCAACGGATGGAAATTGGCAAGCGTTGAAGAAATACTTCATGCTCATCATGGTGATATCATGAAAGATCACATTAATGTGTTGGTGGAAAAATCTCTCATAAAAATAAGTAAGTCTGGTGATGTGACATTACATGATTTGATAGAGGATATGGGAAAAGAAATTGTTAGACAAGAATCACCTCAAGATCCTGGAGAACGCACTAGGTTATGGGCCTATGAAAATCTAAAGAAAGTTTTTAAGGAAGATACGGGAACAAGTAAAATTGAAATCATACATTTCCATTTGGACCATTCGGTTGAACATAAATCAGAAGATTGGGATGGAAAAGCTTTCAAGAAGATGAAAAATCTCAAAACACTTATTTTTAGTAGTCATGTTTGTTTTTCTGAAATTTTTGAGCATATTCCAAATAGTCTACGAGTCCTGGAATATCACTGTGATCACAGTTATCGCAGTGATCGCTATCGCGCATCAACTCCATTTGAGTGTGACAACTTTCTCAAAAAGGCAAGTAAGTTTGAGAATATGAGAGTTTTAAATTATGGTTACGATACACTATTAACAAGAATACCTGATATCTCTAATCTCCCAAATTTAGAACAATTTTCAATTCAAGATTGTCCTAGTTTAATTACAATTGATGAATCTGTTGGCTTTTTGAGTAAACTTAAAATCTTGAGATTTATAGGTTGCAATAACCTCCAGAGTGTTCCACCACTCAATTCAGCTTCACTGGTAGAACTCAATCTTTCACACTGTCATAGTTTAGAAAGTTTTCCTCCTGTGGTGAGTGGATTTCTTGGAGAACTTAAAATCTTGAGGGTTATAGGTTGCAGCAAAATCAGACTTATTCCATCTCTCATGTTACCTTCTCTAGAAGAACTCGATCTTTTAGATTGTACTAGTCTTGACAATTTTTCACATATGGTGTTTCGTGATAAGCTTAAAACCATGAGTTTTAGAGGTTTCAACGCGTTAAGGAGTATTCCACCTCTCAAGTTGGATTCACTTGAAAAACTTTACCTATCACATTGTCGCAATCTCGTGAGCATTTCACCTCTCAAGTTGAATTCACTAGAAAAACTTTACCTATCATTTTGTCCCAATCTCGTGAGTATATCACCTCTCAAGTTGGATTCACTAGAAAAACTTGTCCTTTCAAATTGTTACAAGCTCGAGAGCTTTCCAAGCGTGGTGGATGGGTTTCTTGGAAAACTTAAAACCCTGTTTGTTCGAAATTGTCACAATCTTAGGAGTATTCCAGCTCTCAAGTTGGATTCACTTGAAAAACTTGACCTATCACATTGTCGCAATCTCGTGAGCATTTCACCTCTCAAGTTGGATTCACTAGTAAAACTTTACGTTTCAAGTTGTTATAAGCTCGAGAGCTTTCCAAGTGTGGTGGATGAGTTTCTTGGAAAACTTAAAACCCTATTTGTTAAAAGTTGTCACAATCTCAGGAGTATTCCAGCTCTCAAGTTGGATTCACTTGAAAAACTTCACCTATCACATTGTCACAATCTCGTGAGTATTTCACCTCTCAAGTTAGATTCACTAGAAAAACTTGTCCTTTCAAATTGTTATAAGCTCGAGTGCTTTCCAGGCGTGGTGGATGGGTTGTTGGATAAACTTAAAACCTTGTTTGTTAAAAATTGTCACAATCTTAGGAGTATTCCAGCTCTCAAGTTGGATTCACTTGAAAAACTTGACCTATCACATTGTCCCAATCTTGTGAGTATTCCATCTCTCAAGTTGGATTCACTAGAAACACTTGACCTTTCAGATTGTTATAAGCTCGAGAGCTTTCCAAGTGTGGTGGATGGGTTTCTTGGAAAACTTAAAACCCTATTTGTTAAAAGTTGTCACAATCTCAGGAGTATTCCAGCTCTCAAGTTGGATTCACTTGAAAAACTTCACCTATCACATTGTCACAATCTCGTGAGTATTTCACCTCTCAAGTTGGATTCACTAGAAAAACTTGTCCTTTCAAATTGTTATAAGCTCGAGTGCTTTCCAGGCGTGGAGGATGGGTTGTTGGATAAACTTAAAACCTTGTTTGTTAAAAATTGTCACAATCTTAGGAGTATTCCAGCTCTCAAGTTGGATTCACTTGAAAAACTTGACCTATCACATTGTCCCAATCTTTCAGCACCTGATAGATTGTTACATGGTTCTGATGTTAAGCTTCAGAAAATGACTGCCCAAAAGTCTGTATCGTGTTTTAAGCCTGCAAAAAGAGTGCTCAACTTTACACTCACAGAAGGCAGTGATGATTTGGACAATAGAGGATGTTCTGAGGACTGGAAATCTTTTGGTTCTGTTTCCCTACCTCAGCAGGTAGAGGAGAACCTTGGTCATTCTTTTCAGAAAATCAACGTAGATCAACATTGTTTGGTTGCATCGGATAACAATCCTTCATCATTGGTGGAACTGGTTAATGTGATTGACTCTATATTTGACTCTGTCAAAAGAACTTCAATCACAAGAGGAGCTCTTGCAAAAGGTAATGATAAACTGTTTAGGTTTTGTCGAGATTAG

Protein sequence

>MsG0680035203.01.T01

MLQRLSIIDGTCSDAVAIPPVVDGLLYKLKILRVACCPKLSAIAPLKLGTSNLTTVKGGMAIPKIGNEVTQPDPYFNYVPILSHIDKKSLCMKPDLKTTLAFEVAEDSFEQSADLSLIRYFNSRLMNFSNLHPEVTFFDLRVLLLLIVFSVFTAEIYPILTVVDESLSHSFQKINVDQHCLDASDNNPSSSVELVNVIDSIFDSVKRTSITKEELLQKIMMNCLDFVEIREAEEHIEILEKTVPDWLCKKVVSSGDTTFRGEDTRYGFTGNLKKALDDKGVKTFMDEKDLLKGEEITPSLLKAIEDSNMAIVVLSENYAYSSFCLQELSHILHSINDRGRCVHPVFYKVDPSDVRKLRNSYGKAMAKHEGRCCWPVSNPNVDKWKASLHQVANLSGSHYKGDEYEFDFIKKIVHQILRNTKPIVLHAGDYLVGLEHQKQYLTSLLNIGSDATIHMVGIHGIGGIGKTTLALEVYNLIVHQFQISCFLEKVRENSNRNGLIYLQKILLSRIVGEENMEFTSVAEGISILQQRLHQKKVLLLLDDVDNLEQLEAIAGRSKWFGPGSRVIITTRDIRLLTRHEVERTYEVMGLNDEDAFDLVGRKALKNEYSSSLKDILSIQKYGRELMDLNVRVFPGYAHVLKRAVAYASGLPLALEVIGSHFFKKTIEECKCALDRYERVPDKKIQTTLQLSFDALREEEKFVFLDIACCFNGWKLASVEEILHAHHGDIMKDHINVLVEKSLIKISKSGDVTLHDLIEDMGKEIVRQESPQDPGERTRLWAYENLKKVFKEDTGTSKIEIIHFHLDHSVEHKSEDWDGKAFKKMKNLKTLIFSSHVCFSEIFEHIPNSLRVLEYHCDHSYRSDRYRASTPFECDNFLKKASKFENMRVLNYGYDTLLTRIPDISNLPNLEQFSIQDCPSLITIDESVGFLSKLKILRFIGCNNLQSVPPLNSASLVELNLSHCHSLESFPPVVSGFLGELKILRVIGCSKIRLIPSLMLPSLEELDLLDCTSLDNFSHMVFRDKLKTMSFRGFNALRSIPPLKLDSLEKLYLSHCRNLVSISPLKLNSLEKLYLSFCPNLVSISPLKLDSLEKLVLSNCYKLESFPSVVDGFLGKLKTLFVRNCHNLRSIPALKLDSLEKLDLSHCRNLVSISPLKLDSLVKLYVSSCYKLESFPSVVDEFLGKLKTLFVKSCHNLRSIPALKLDSLEKLHLSHCHNLVSISPLKLDSLEKLVLSNCYKLECFPGVVDGLLDKLKTLFVKNCHNLRSIPALKLDSLEKLDLSHCPNLVSIPSLKLDSLETLDLSDCYKLESFPSVVDGFLGKLKTLFVKSCHNLRSIPALKLDSLEKLHLSHCHNLVSISPLKLDSLEKLVLSNCYKLECFPGVEDGLLDKLKTLFVKNCHNLRSIPALKLDSLEKLDLSHCPNLSAPDRLLHGSDVKLQKMTAQKSVSCFKPAKRVLNFTLTEGSDDLDNRGCSEDWKSFGSVSLPQQVEENLGHSFQKINVDQHCLVASDNNPSSLVELVNVIDSIFDSVKRTSITRGALAKGNDKLFRFCRD*