AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035430.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035430.01.T01 MTR_7g446520 72.653 245 44 2 8 247 33 259 1.48e-118 350
MsG0680035430.01.T01 MTR_7g028855 79.793 193 36 1 12 201 71 263 1.22e-100 308
MsG0680035430.01.T01 MTR_7g446480 51.230 244 60 4 6 247 66 252 3.53e-65 212
MsG0680035430.01.T01 MTR_7g446510 80.531 113 22 0 135 247 155 267 5.23e-58 194
MsG0680035430.01.T01 MTR_1g070355 31.600 250 150 4 21 251 19 266 4.70e-29 120
MsG0680035430.01.T01 MTR_5g076070 30.332 211 125 2 10 220 27 215 4.89e-26 107
MsG0680035430.01.T01 MTR_6g022080 26.744 172 126 0 49 220 76 247 3.41e-19 87.0
MsG0680035430.01.T01 MTR_8g467420 43.373 83 46 1 41 122 61 143 1.80e-16 77.4
MsG0680035430.01.T01 MTR_0402s0040 32.022 178 109 4 62 234 30 200 6.72e-15 77.0
MsG0680035430.01.T01 MTR_6g051425 27.143 210 147 4 66 272 25 231 2.34e-14 74.3
MsG0680035430.01.T01 MTR_0060s0090 36.250 80 51 0 61 140 59 138 2.97e-12 64.7
MsG0680035430.01.T01 MTR_1g008290 31.405 121 78 2 126 246 18 133 3.07e-12 64.7
MsG0680035430.01.T01 MTR_6g053140 29.167 168 101 4 10 169 47 204 5.10e-12 65.5
MsG0680035430.01.T01 MTR_3g448650 41.250 80 47 0 54 133 78 157 7.94e-12 64.3
MsG0680035430.01.T01 MTR_2g101460 31.200 125 86 0 49 173 46 170 2.91e-11 63.2
MsG0680035430.01.T01 MTR_2g098880 35.119 168 93 6 4 159 11 174 3.71e-11 63.9
MsG0680035430.01.T01 MTR_2g098880 37.615 109 66 2 52 159 55 162 6.08e-11 63.2
MsG0680035430.01.T01 MTR_2g101460 31.200 125 86 0 49 173 36 160 7.16e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035430.01.T01 AT4G38180 34.518 197 125 4 54 248 69 263 9.90e-19 89.7
MsG0680035430.01.T01 AT5G28530 24.390 246 173 6 64 298 61 304 1.99e-12 69.7
MsG0680035430.01.T01 AT5G28530 24.390 246 173 6 64 298 61 304 2.00e-12 69.7

Find 124 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATCCAAGGATGCTGATTT+TGG 0.129837 6:+105459014 MsG0680035430.01.T01:CDS
ATCTTTATATTGAATGTATT+TGG 0.141751 6:+105459470 MsG0680035430.01.T01:three_prime_UTR
TGATGGTCATCAACAGAATT+TGG 0.184073 6:+105457491 MsG0680035430.01.T01:CDS
TGATGGTCAACAACAGAATT+TGG 0.195932 6:+105458986 MsG0680035430.01.T01:CDS
AATAAGAACTTGTCATATAA+TGG 0.247315 6:+105455922 MsG0680035430.01.T01:CDS
TGTTCACTACAGACCCAAAA+AGG 0.266221 6:+105455763 MsG0680035430.01.T01:CDS
CCATCTGTTACAACTGCTTT+TGG 0.274383 6:-105456379 None:intergenic
CTGTTAGGAATTGTGATATT+AGG 0.279838 6:+105455600 MsG0680035430.01.T01:CDS
TCTTCCCCAAATCTTGTATA+GGG 0.283293 6:+105459554 MsG0680035430.01.T01:three_prime_UTR
TGAACTCTTGTTAAGAGAAT+TGG 0.288367 6:+105459289 MsG0680035430.01.T01:CDS
TGCATTTACACCCAGTTTAT+CGG 0.295746 6:+105455849 MsG0680035430.01.T01:CDS
AAGTATCCCTATACAAGATT+TGG 0.306401 6:-105459560 None:intergenic
TTCTTCCCCAAATCTTGTAT+AGG 0.311667 6:+105459553 MsG0680035430.01.T01:three_prime_UTR
CTTTGCAGAAACAATGATTA+AGG 0.317528 6:+105459378 MsG0680035430.01.T01:exon
CATTAACTGCTGAAGGAATA+AGG 0.318241 6:+105455507 MsG0680035430.01.T01:CDS
TGCTGAAGGAATAAGGAAAA+TGG 0.318497 6:+105455514 MsG0680035430.01.T01:CDS
AGTATCCCTATACAAGATTT+GGG 0.326060 6:-105459559 None:intergenic
GATGGTCATCAACAGAATTT+GGG 0.329683 6:+105457492 MsG0680035430.01.T01:CDS
GATGGTCAACAACAGAATTT+GGG 0.349213 6:+105458987 MsG0680035430.01.T01:CDS
TTCTATGAGGGAGGCGATAA+AGG 0.353001 6:+105456408 MsG0680035430.01.T01:CDS
TTGCCATGCACTCTTCTCAT+TGG 0.355246 6:+105459511 MsG0680035430.01.T01:three_prime_UTR
TATGATATTGTAAGTAACTT+TGG 0.357091 6:+105459656 MsG0680035430.01.T01:three_prime_UTR
ATTGTTTCTGCAAAGTGTAT+TGG 0.357614 6:-105459370 None:intergenic
TATGCTTTGAAACAATGTTT+AGG 0.359474 6:+105459620 MsG0680035430.01.T01:three_prime_UTR
GCTCAGGAGGGTGGATATCC+TGG 0.366065 6:+105455956 MsG0680035430.01.T01:CDS
CATTGGTTGGAGTAGGTTCA+TGG 0.373380 6:-105455823 None:intergenic
AGATCAGATTATTTCTGCTT+TGG 0.376852 6:+105456172 MsG0680035430.01.T01:CDS
ATAAGAACTTGTCATATAAT+GGG 0.403187 6:+105455923 MsG0680035430.01.T01:CDS
AGCATTTATCAAGGTTAGAT+AGG 0.409294 6:+105455690 MsG0680035430.01.T01:CDS
CCATGCACTCTTCTCATTGG+TGG 0.425389 6:+105459514 MsG0680035430.01.T01:three_prime_UTR
TATAAGTACGGTAAGTGTAA+TGG 0.430620 6:+105455572 MsG0680035430.01.T01:CDS
CGTCCCAAAATCAGCATCCT+TGG 0.436941 6:-105459018 None:intergenic
GATATTAGGCGCATTGTTAA+CGG 0.439630 6:+105455614 MsG0680035430.01.T01:CDS
ATTCACATGGTCTTCATTGA+AGG 0.443441 6:+105459139 MsG0680035430.01.T01:CDS
GAGAGAAGAAGCATTTATCA+AGG 0.445750 6:+105455681 MsG0680035430.01.T01:CDS
TGAATGTATTTGGCTAAGAA+TGG 0.447776 6:+105459480 MsG0680035430.01.T01:three_prime_UTR
GAAGATAAAGCACAAATTGA+TGG 0.451536 6:+105455884 MsG0680035430.01.T01:CDS
AGTATGTCAAGGCTTCAAAT+TGG 0.456191 6:+105459432 MsG0680035430.01.T01:three_prime_UTR
ATCTTGTATAGGGATACTTT+AGG 0.457036 6:+105459564 MsG0680035430.01.T01:three_prime_UTR
AATTTGTGCTTTATCTTCCT+CGG 0.458744 6:-105455879 None:intergenic
ACAAAATCACCAACGGATAG+TGG 0.461754 6:-105456237 None:intergenic
TCATCACGTTGATAGAAGAT+TGG 0.461825 6:-105455353 None:intergenic
GAGGGTGGATATCCTGGTGT+TGG 0.462922 6:+105455962 MsG0680035430.01.T01:CDS
AAGCATAGTTATTGACATAG+AGG 0.464267 6:-105459604 None:intergenic
TAAGAGAATTGGTTAGAAGA+TGG 0.465771 6:+105459300 MsG0680035430.01.T01:CDS
ATCTCACCAGACCTCATCCT+CGG 0.472136 6:-105457523 None:intergenic
GGGATACATGGTGGCTCAGG+AGG 0.479846 6:+105455943 MsG0680035430.01.T01:CDS
TGGTCAGAGGAAACTGATAT+TGG 0.481865 6:-105459065 None:intergenic
AATGGGATACATGGTGGCTC+AGG 0.483483 6:+105455940 MsG0680035430.01.T01:CDS
AGGGTGGATATCCTGGTGTT+GGG 0.493559 6:+105455963 MsG0680035430.01.T01:CDS
TATCAAACCTGTCATTGTTA+CGG 0.494518 6:-105459691 None:intergenic
TTTGATACCGTAACAATGAC+AGG 0.496921 6:+105459684 MsG0680035430.01.T01:three_prime_UTR
ATACAAGATTTGGGGAAGAA+AGG 0.497353 6:-105459550 None:intergenic
GCAGTATGTATGCAACATGC+AGG 0.502107 6:+105455652 MsG0680035430.01.T01:CDS
TGTAGTTGTTGGTGAGGAAA+TGG 0.504666 6:+105455472 MsG0680035430.01.T01:CDS
GAAGATGATGATGTAGTTGT+TGG 0.505754 6:+105455461 MsG0680035430.01.T01:CDS
AAGATTTGGGGAAGAAAGGA+AGG 0.506654 6:-105459546 None:intergenic
ATGAACCCGAGGATGAGGTC+TGG 0.518989 6:+105457517 MsG0680035430.01.T01:CDS
ATAAATTCATTAACTGCTGA+AGG 0.519495 6:+105455500 MsG0680035430.01.T01:CDS
AAATCACAAAGATATGAGAT+TGG 0.521836 6:+105459325 MsG0680035430.01.T01:CDS
CAGATGGTGATGGTTCTATG+AGG 0.523380 6:+105456395 MsG0680035430.01.T01:CDS
ATGCGTGTTGTTATTAAGGA+TGG 0.526641 6:+105456025 MsG0680035430.01.T01:CDS
CAGAGGAAACTGATATTGGT+TGG 0.530736 6:-105459061 None:intergenic
GGGGAATGAACCCGAGGATG+AGG 0.533841 6:+105457512 MsG0680035430.01.T01:CDS
ATTCTACCGGCGAAGTAGCA+TGG 0.534707 6:-105459101 None:intergenic
TCTCACCAGACCTCATCCTC+GGG 0.541204 6:-105457522 None:intergenic
TTATTTCTGCTTTGGCGATG+TGG 0.544268 6:+105456180 MsG0680035430.01.T01:CDS
TAGTGAACACGGAGCCTAGT+TGG 0.546209 6:-105455749 None:intergenic
TACATGGTGGCTCAGGAGGG+TGG 0.549576 6:+105455947 MsG0680035430.01.T01:CDS
TTGTCATATAATGGGATACA+TGG 0.555297 6:+105455931 MsG0680035430.01.T01:CDS
ATCTTCTATCAACGTGATGA+AGG 0.556872 6:+105455356 MsG0680035430.01.T01:CDS
CAGTATGTATGCAACATGCA+GGG 0.567358 6:+105455653 MsG0680035430.01.T01:CDS
AAGAGTGCATGGCAAGACCT+TGG 0.567658 6:-105459503 None:intergenic
GACTACAGCTGAAATTCTAC+CGG 0.568069 6:-105459114 None:intergenic
CAGCTGTAGTCTCATTCACA+TGG 0.568370 6:+105459126 MsG0680035430.01.T01:CDS
TTGTTGGTGAGGAAATGGTA+AGG 0.572827 6:+105455477 MsG0680035430.01.T01:CDS
ATCCCTCCATGCTACTTCGC+CGG 0.573209 6:+105459095 MsG0680035430.01.T01:CDS
ATGTCGAGTCGAGTATGTCA+AGG 0.574844 6:+105459421 MsG0680035430.01.T01:three_prime_UTR
TTCTTAGTGAACCCAACACC+AGG 0.574956 6:-105455974 None:intergenic
AAGTAGCATGGAGGGATTAG+CGG 0.575147 6:-105459089 None:intergenic
TCTAGTGGTGGTGATGATGA+TGG 0.581366 6:+105458969 MsG0680035430.01.T01:CDS
AGCATGGAGGGATTAGCGGC+TGG 0.584463 6:-105459085 None:intergenic
CCAAAAGCAGTTGTAACAGA+TGG 0.588696 6:+105456379 MsG0680035430.01.T01:CDS
TGTAAATGCACAACATTGGT+TGG 0.596152 6:-105455836 None:intergenic
AAATGTTCGTCAAGGAGTAG+AGG 0.599549 6:+105457444 MsG0680035430.01.T01:CDS
AGTAGAGGAATTGTGTCTAG+TGG 0.600835 6:+105458954 MsG0680035430.01.T01:CDS
GAATTTGGGGAATGAATCCA+AGG 0.600921 6:+105459001 MsG0680035430.01.T01:CDS
ATTTGGGGAAGAAAGGAAGG+AGG 0.603147 6:-105459543 None:intergenic
TATCAACGTGATGAAGGTGG+AGG 0.603449 6:+105455362 MsG0680035430.01.T01:CDS
CTCGTACAAAGTGTCCAACT+AGG 0.606935 6:+105455735 MsG0680035430.01.T01:CDS
TTCTATCAACGTGATGAAGG+TGG 0.607248 6:+105455359 MsG0680035430.01.T01:CDS
TACCGGCGAAGTAGCATGGA+GGG 0.614416 6:-105459097 None:intergenic
AGTGAAGGTCATGGTAGTGA+AGG 0.614950 6:+105455422 MsG0680035430.01.T01:CDS
GGATACATGGTGGCTCAGGA+GGG 0.615392 6:+105455944 MsG0680035430.01.T01:CDS
CCACCAATGAGAAGAGTGCA+TGG 0.616211 6:-105459514 None:intergenic
AGGGATTAGCGGCTGGTCAG+AGG 0.617741 6:-105459078 None:intergenic
TATTTGGCTAAGAATGGCCA+AGG 0.618221 6:+105459486 MsG0680035430.01.T01:three_prime_UTR
GCAGTTGTAACAGATGGTGA+TGG 0.618869 6:+105456385 MsG0680035430.01.T01:CDS
AGGTGTCAAAATGTTCGTCA+AGG 0.633094 6:+105457436 MsG0680035430.01.T01:intron
TGCACAACATTGGTTGGAGT+AGG 0.634569 6:-105455830 None:intergenic
AGTAGAGGAACTATGTCTAG+TGG 0.637170 6:+105457459 MsG0680035430.01.T01:CDS
AGATGGTGATGGTTCTATGA+GGG 0.637450 6:+105456396 MsG0680035430.01.T01:CDS
TTAACGGTGAGATTGTAATG+AGG 0.638002 6:+105455630 MsG0680035430.01.T01:CDS
AGTGAAAGTGATGGTAGTGA+AGG 0.642775 6:+105455392 MsG0680035430.01.T01:CDS
GAACAAATACCACTATCCGT+TGG 0.644673 6:+105456228 MsG0680035430.01.T01:CDS
TGGTGATGGTTCTATGAGGG+AGG 0.649015 6:+105456399 MsG0680035430.01.T01:CDS
AGTATGTATGCAACATGCAG+GGG 0.649336 6:+105455654 MsG0680035430.01.T01:CDS
AGAGGAATTGTGTCTAGTGG+TGG 0.650380 6:+105458957 MsG0680035430.01.T01:CDS
TATGAGGGAGGCGATAAAGG+CGG 0.662119 6:+105456411 MsG0680035430.01.T01:CDS
TGATGATGTAGTTGTTGGTG+AGG 0.665725 6:+105455466 MsG0680035430.01.T01:CDS
GGTGATGAAAGTGAAGGTCA+TGG 0.667300 6:+105455413 MsG0680035430.01.T01:CDS
TCTAGTGGTGATGAAGATGA+TGG 0.668407 6:+105457474 MsG0680035430.01.T01:CDS
TCATATAATGGGATACATGG+TGG 0.669224 6:+105455934 MsG0680035430.01.T01:CDS
TGGGTGTAAATGCACAACAT+TGG 0.669925 6:-105455840 None:intergenic
GTATCCCTATACAAGATTTG+GGG 0.680152 6:-105459558 None:intergenic
ATGGTCAACAACAGAATTTG+GGG 0.683744 6:+105458988 MsG0680035430.01.T01:CDS
ATGGTCATCAACAGAATTTG+GGG 0.685770 6:+105457493 MsG0680035430.01.T01:CDS
GGTGATGAAAGTGAAAGTGA+TGG 0.687920 6:+105455383 MsG0680035430.01.T01:CDS
GAATTTGGGGAATGAACCCG+AGG 0.699610 6:+105457506 MsG0680035430.01.T01:CDS
AGTTTATCGGAAAATATCCG+AGG 0.709805 6:+105455862 MsG0680035430.01.T01:CDS
ATTGATGGTCTTCAGTCACA+CGG 0.717148 6:+105455899 MsG0680035430.01.T01:CDS
CTACCGGCGAAGTAGCATGG+AGG 0.727997 6:-105459098 None:intergenic
AGTGAAGGTGATGAAAGTGA+AGG 0.731903 6:+105455407 MsG0680035430.01.T01:CDS
ACTTTGTACGAGTGATACGT+CGG 0.754568 6:-105455724 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTAATGATTCAATTT+TGG + Chr6:105458204-105458223 MsG0680035430.01.T01:intron 10.0%
!!! ATAGCTTTTTATTTTTATTT+TGG + Chr6:105457280-105457299 MsG0680035430.01.T01:intron 10.0%
!!! TAATTTAATGATTCAATTTT+GGG + Chr6:105458205-105458224 MsG0680035430.01.T01:intron 10.0%
!!! TAATTTTAAAAATAGTTTGT+TGG + Chr6:105458293-105458312 MsG0680035430.01.T01:intron 10.0%
!! AAAATAAATTTGAATTAGCA+AGG - Chr6:105458858-105458877 None:intergenic 15.0%
!! AATAATTATGTTATAGTTGA+TGG + Chr6:105458350-105458369 MsG0680035430.01.T01:intron 15.0%
!! ATCTTTATATTGAATGTATT+TGG + Chr6:105459470-105459489 MsG0680035430.01.T01:three_prime_UTR 15.0%
!! CAATATTCTTAAAAATAATC+TGG - Chr6:105457193-105457212 None:intergenic 15.0%
!!! AAGAATATTGTCATTTAATA+TGG + Chr6:105457203-105457222 MsG0680035430.01.T01:intron 15.0%
!!! AATTCAAATTTATTTTTAGG+TGG + Chr6:105458862-105458881 MsG0680035430.01.T01:intron 15.0%
!!! AGAATATTGTCATTTAATAT+GGG + Chr6:105457204-105457223 MsG0680035430.01.T01:intron 15.0%
!!! GCTAATTCAAATTTATTTTT+AGG + Chr6:105458859-105458878 MsG0680035430.01.T01:intron 15.0%
!!! TACGATTTTTATTATAAGTA+CGG + Chr6:105455560-105455579 MsG0680035430.01.T01:CDS 15.0%
!!! TTTTGATATAAACAGTTTTA+AGG + Chr6:105458931-105458950 MsG0680035430.01.T01:intron 15.0%
!! AAAATTGGTAAACTAAAGTT+TGG + Chr6:105456724-105456743 MsG0680035430.01.T01:intron 20.0%
!! AAACAATAGAAACTTATATG+TGG + Chr6:105456317-105456336 MsG0680035430.01.T01:intron 20.0%
!! AACAATAGAAACTTATATGT+GGG + Chr6:105456318-105456337 MsG0680035430.01.T01:intron 20.0%
!! AACATATGCAAAATAAAATC+AGG - Chr6:105457999-105458018 None:intergenic 20.0%
!! AATAAGAACTTGTCATATAA+TGG + Chr6:105455922-105455941 MsG0680035430.01.T01:CDS 20.0%
!! ACATATGCAAAATAAAATCA+GGG - Chr6:105457998-105458017 None:intergenic 20.0%
!! AGACATGATTAAAACTAATA+TGG + Chr6:105459222-105459241 MsG0680035430.01.T01:intron 20.0%
!! ATAAATCAGTAACTAATGAA+AGG - Chr6:105458582-105458601 None:intergenic 20.0%
!! ATAAGAACTTGTCATATAAT+GGG + Chr6:105455923-105455942 MsG0680035430.01.T01:CDS 20.0%
!! GCAATAAACAATATATGATA+TGG + Chr6:105458696-105458715 MsG0680035430.01.T01:intron 20.0%
!! GTTCATGATAACAAAAAAAT+TGG - Chr6:105458836-105458855 None:intergenic 20.0%
!! TATGATATTGTAAGTAACTT+TGG + Chr6:105459656-105459675 MsG0680035430.01.T01:three_prime_UTR 20.0%
!! TATTCCGTCAATAAAAAAAA+CGG - Chr6:105458386-105458405 None:intergenic 20.0%
!! TGATTTAAAAAGAAGAAAAG+TGG + Chr6:105456815-105456834 MsG0680035430.01.T01:intron 20.0%
!!! ATAGTTTTAAATTACAGTTG+CGG - Chr6:105459199-105459218 None:intergenic 20.0%
!!! ATTAAGTCAGACATTTTAAA+TGG + Chr6:105456779-105456798 MsG0680035430.01.T01:intron 20.0%
!!! ATTGTTGTTTAAATTGATCA+GGG + Chr6:105457250-105457269 MsG0680035430.01.T01:intron 20.0%
!!! GCATTGAATTATTGTATTTT+TGG + Chr6:105458738-105458757 MsG0680035430.01.T01:intron 20.0%
!!! TATTGTTGTTTAAATTGATC+AGG + Chr6:105457249-105457268 MsG0680035430.01.T01:intron 20.0%
!!! TTAAGTCAGACATTTTAAAT+GGG + Chr6:105456780-105456799 MsG0680035430.01.T01:intron 20.0%
!!! TTACTTTTTGTTATCATGAA+AGG + Chr6:105458612-105458631 MsG0680035430.01.T01:intron 20.0%
!!! TTTCTTCTTTTTAAATCAAG+TGG - Chr6:105456813-105456832 None:intergenic 20.0%
!!! TTTTCCGTTTTTTTTATTGA+CGG + Chr6:105458379-105458398 MsG0680035430.01.T01:intron 20.0%
!!! TTTTTCCTTTATTCTAATTC+AGG + Chr6:105458042-105458061 MsG0680035430.01.T01:intron 20.0%
! AAATCACAAAGATATGAGAT+TGG + Chr6:105459325-105459344 MsG0680035430.01.T01:CDS 25.0%
! AATATGGATTTCTTATCACT+AGG + Chr6:105459238-105459257 MsG0680035430.01.T01:intron 25.0%
! AATGAAAATTGTACACTCTT+AGG + Chr6:105456699-105456718 MsG0680035430.01.T01:intron 25.0%
! AGTTAGTATCTTATGTTTGA+TGG + Chr6:105458907-105458926 MsG0680035430.01.T01:intron 25.0%
! ATAAATTCATTAACTGCTGA+AGG + Chr6:105455500-105455519 MsG0680035430.01.T01:CDS 25.0%
! ATAATAAATGCACGAAATGA+AGG + Chr6:105458102-105458121 MsG0680035430.01.T01:intron 25.0%
! ATAGAAAAAAAAACAAGCTC+AGG - Chr6:105458797-105458816 None:intergenic 25.0%
! ATGAAAATATTAGCCCAAAA+GGG - Chr6:105458186-105458205 None:intergenic 25.0%
! ATGAAATTTGATGAAAGCTT+CGG - Chr6:105456497-105456516 None:intergenic 25.0%
! CATAAGATACTAACTCTATT+TGG - Chr6:105458902-105458921 None:intergenic 25.0%
! CTCACAACTTTAATTAATCT+TGG + Chr6:105458065-105458084 MsG0680035430.01.T01:intron 25.0%
! GTAAACTAAAGTTTGGAAAA+TGG + Chr6:105456731-105456750 MsG0680035430.01.T01:intron 25.0%
! TATGAAAATATTAGCCCAAA+AGG - Chr6:105458187-105458206 None:intergenic 25.0%
! TCAATTATATCTCATTCACA+TGG + Chr6:105457621-105457640 MsG0680035430.01.T01:intron 25.0%
! TCTGGAAATAAAACATGAAA+AGG - Chr6:105457175-105457194 None:intergenic 25.0%
! TGGTTGTTCATTATTAAGTT+GGG + Chr6:105457789-105457808 MsG0680035430.01.T01:intron 25.0%
! TTGGTTGTTCATTATTAAGT+TGG + Chr6:105457788-105457807 MsG0680035430.01.T01:intron 25.0%
!! AAAAATGCGTGTTGTTATTA+AGG + Chr6:105456021-105456040 MsG0680035430.01.T01:CDS 25.0%
!! ATTTTCCTGCATATATTCAA+AGG + Chr6:105457678-105457697 MsG0680035430.01.T01:intron 25.0%
!! CTGTGATTGTTTAGTTATTT+TGG + Chr6:105457740-105457759 MsG0680035430.01.T01:intron 25.0%
!! GGTATCTTCTTTATTTGATA+TGG + Chr6:105457655-105457674 MsG0680035430.01.T01:intron 25.0%
!! TTTTCCTGCATATATTCAAA+GGG + Chr6:105457679-105457698 MsG0680035430.01.T01:intron 25.0%
!! TTTTGATATGAACAATGGTA+AGG + Chr6:105457416-105457435 MsG0680035430.01.T01:intron 25.0%
!!! ACGTTTGAAATGTGTATTTT+GGG + Chr6:105456135-105456154 MsG0680035430.01.T01:intron 25.0%
!!! ATTTTGGTTTTGCTTTTGTT+AGG + Chr6:105457296-105457315 MsG0680035430.01.T01:intron 25.0%
!!! CATATGTTTTGAAAAGTGTT+AGG + Chr6:105458011-105458030 MsG0680035430.01.T01:intron 25.0%
!!! CATGTTTTTTAGTTAAGCTA+TGG + Chr6:105457825-105457844 MsG0680035430.01.T01:intron 25.0%
!!! TATGCTTTGAAACAATGTTT+AGG + Chr6:105459620-105459639 MsG0680035430.01.T01:three_prime_UTR 25.0%
!!! TTACTTTTTCATACGATTGT+TGG + Chr6:105458424-105458443 MsG0680035430.01.T01:intron 25.0%
!!! TTGGAATTGTTATTTCGAAT+GGG + Chr6:105457356-105457375 MsG0680035430.01.T01:intron 25.0%
!!! TTTGGAATTGTTATTTCGAA+TGG + Chr6:105457355-105457374 MsG0680035430.01.T01:intron 25.0%
!!! TTTTATTGATTGAATGGTGA+AGG - Chr6:105457958-105457977 None:intergenic 25.0%
!!! TTTTGGTTTTGCTTTTGTTA+GGG + Chr6:105457297-105457316 MsG0680035430.01.T01:intron 25.0%
AAGCATAGTTATTGACATAG+AGG - Chr6:105459607-105459626 None:intergenic 30.0%
AAGTATCCCTATACAAGATT+TGG - Chr6:105459563-105459582 None:intergenic 30.0%
AATAAACACAACACAGTCAA+GGG - Chr6:105457709-105457728 None:intergenic 30.0%
AATGCCATCCAACAATAATA+GGG - Chr6:105458723-105458742 None:intergenic 30.0%
AATTTGTGCTTTATCTTCCT+CGG - Chr6:105455882-105455901 None:intergenic 30.0%
AGCATTTATCAAGGTTAGAT+AGG + Chr6:105455690-105455709 MsG0680035430.01.T01:CDS 30.0%
AGTATCCCTATACAAGATTT+GGG - Chr6:105459562-105459581 None:intergenic 30.0%
ATCTTGTATAGGGATACTTT+AGG + Chr6:105459564-105459583 MsG0680035430.01.T01:three_prime_UTR 30.0%
ATTTGATGAATCTGAACGAA+GGG - Chr6:105457057-105457076 None:intergenic 30.0%
CAAATATAACTGTTTGTGAG+TGG - Chr6:105456276-105456295 None:intergenic 30.0%
CAATACTCACACCAAAATTA+AGG - Chr6:105456454-105456473 None:intergenic 30.0%
CACTCACAAACAGTTATATT+TGG + Chr6:105456274-105456293 MsG0680035430.01.T01:intron 30.0%
CTGTTAGGAATTGTGATATT+AGG + Chr6:105455600-105455619 MsG0680035430.01.T01:CDS 30.0%
CTTTGCAGAAACAATGATTA+AGG + Chr6:105459378-105459397 MsG0680035430.01.T01:exon 30.0%
GAAGATAAAGCACAAATTGA+TGG + Chr6:105455884-105455903 MsG0680035430.01.T01:CDS 30.0%
GAATATTCACAAAAGGAATG+TGG - Chr6:105456100-105456119 None:intergenic 30.0%
GTACACTCTTAGGAAAAAAT+TGG + Chr6:105456709-105456728 MsG0680035430.01.T01:intron 30.0%
TAAGAGAATTGGTTAGAAGA+TGG + Chr6:105459300-105459319 MsG0680035430.01.T01:CDS 30.0%
TATAAGTACGGTAAGTGTAA+TGG + Chr6:105455572-105455591 MsG0680035430.01.T01:CDS 30.0%
TATCAAACCTGTCATTGTTA+CGG - Chr6:105459694-105459713 None:intergenic 30.0%
TGAAAATATTAGCCCAAAAG+GGG - Chr6:105458185-105458204 None:intergenic 30.0%
TGAACTCTTGTTAAGAGAAT+TGG + Chr6:105459289-105459308 MsG0680035430.01.T01:CDS 30.0%
TGAATGTATTTGGCTAAGAA+TGG + Chr6:105459480-105459499 MsG0680035430.01.T01:three_prime_UTR 30.0%
TTAAGTAGATCCATGAAGAT+TGG + Chr6:105457763-105457782 MsG0680035430.01.T01:intron 30.0%
TTCCAAAATCAAGCTATAGA+AGG - Chr6:105458537-105458556 None:intergenic 30.0%
TTGACGGAATAAAAGAAGAA+AGG + Chr6:105458395-105458414 MsG0680035430.01.T01:intron 30.0%
TTGTTGAGGGTTTGAATATT+TGG + Chr6:105457337-105457356 MsG0680035430.01.T01:intron 30.0%
TTTCCTGCATATATTCAAAG+GGG + Chr6:105457680-105457699 MsG0680035430.01.T01:intron 30.0%
! ACCAGTTTTCTAGATTGTAT+GGG + Chr6:105456346-105456365 MsG0680035430.01.T01:intron 30.0%
! ATGGCTTTTGATATGAACAA+TGG + Chr6:105457411-105457430 MsG0680035430.01.T01:intron 30.0%
! GGTAAGCTTAAATTTTCTCA+GGG - Chr6:105457904-105457923 None:intergenic 30.0%
! GGTTGTTCATTATTAAGTTG+GGG + Chr6:105457790-105457809 MsG0680035430.01.T01:intron 30.0%
! TCTTTATTTGATATGGACCT+TGG + Chr6:105459167-105459186 MsG0680035430.01.T01:intron 30.0%
! TGGTAAGCTTAAATTTTCTC+AGG - Chr6:105457905-105457924 None:intergenic 30.0%
! TGTCATTTAATATGGGTTTG+TGG + Chr6:105457211-105457230 MsG0680035430.01.T01:intron 30.0%
! TTCCTTCTATAGCTTGATTT+TGG + Chr6:105458532-105458551 MsG0680035430.01.T01:intron 30.0%
! TTGTCATATAATGGGATACA+TGG + Chr6:105455931-105455950 MsG0680035430.01.T01:CDS 30.0%
!! AGATCAGATTATTTCTGCTT+TGG + Chr6:105456172-105456191 MsG0680035430.01.T01:CDS 30.0%
!! ATTGTTTCTGCAAAGTGTAT+TGG - Chr6:105459373-105459392 None:intergenic 30.0%
!! GACGTTTGAAATGTGTATTT+TGG + Chr6:105456134-105456153 MsG0680035430.01.T01:intron 30.0%
!! GATGAGAATCTATTGATTCT+GGG - Chr6:105457087-105457106 None:intergenic 30.0%
!! GTAGGCTTTTATTGATTGAA+TGG - Chr6:105457964-105457983 None:intergenic 30.0%
!! TCATTATTAAGTTGGGGAAT+TGG + Chr6:105457796-105457815 MsG0680035430.01.T01:intron 30.0%
!! TTTGGTGTTCTTATGTTTGA+TGG + Chr6:105457392-105457411 MsG0680035430.01.T01:intron 30.0%
!!! GTGTTTTTTGTACTAGTGAA+TGG - Chr6:105456757-105456776 None:intergenic 30.0%
!!! TAAACAGTTTTAAGGAGTAG+AGG + Chr6:105458939-105458958 MsG0680035430.01.T01:intron 30.0%
!!! TTATTTTTAGGTGGAAGACT+TGG + Chr6:105458871-105458890 MsG0680035430.01.T01:intron 30.0%
AAACCCCTTTGAATATATGC+AGG - Chr6:105457686-105457705 None:intergenic 35.0%
AAAGTGGTAACCAAACATGA+TGG + Chr6:105456831-105456850 MsG0680035430.01.T01:intron 35.0%
AACATCAACCAAACATCTTG+AGG + Chr6:105456630-105456649 MsG0680035430.01.T01:intron 35.0%
ACTCACACCAAAATTAAGGA+AGG - Chr6:105456450-105456469 None:intergenic 35.0%
ACTTGTAACATGTTGATCCA+TGG + Chr6:105457865-105457884 MsG0680035430.01.T01:intron 35.0%
AGATAAACTCTCGAGAGAAA+AGG - Chr6:105456857-105456876 None:intergenic 35.0%
AGTATGTCAAGGCTTCAAAT+TGG + Chr6:105459432-105459451 MsG0680035430.01.T01:three_prime_UTR 35.0%
AGTGGCAGAATATTCACAAA+AGG - Chr6:105456107-105456126 None:intergenic 35.0%
AGTTGTTCTCGTAACATTGT+AGG + Chr6:105458144-105458163 MsG0680035430.01.T01:intron 35.0%
AGTTTATCGGAAAATATCCG+AGG + Chr6:105455862-105455881 MsG0680035430.01.T01:CDS 35.0%
ATACAAGATTTGGGGAAGAA+AGG - Chr6:105459553-105459572 None:intergenic 35.0%
ATCTTCTATCAACGTGATGA+AGG + Chr6:105455356-105455375 MsG0680035430.01.T01:CDS 35.0%
ATGGTCAACAACAGAATTTG+GGG + Chr6:105458988-105459007 MsG0680035430.01.T01:CDS 35.0%
ATGGTCATCAACAGAATTTG+GGG + Chr6:105457493-105457512 MsG0680035430.01.T01:CDS 35.0%
ATTCACATGGTCTTCATTGA+AGG + Chr6:105459139-105459158 MsG0680035430.01.T01:CDS 35.0%
CAATAAACACAACACAGTCA+AGG - Chr6:105457710-105457729 None:intergenic 35.0%
CAATGCCATCCAACAATAAT+AGG - Chr6:105458724-105458743 None:intergenic 35.0%
CATTAACTGCTGAAGGAATA+AGG + Chr6:105455507-105455526 MsG0680035430.01.T01:CDS 35.0%
CTCACACCAAAATTAAGGAA+GGG - Chr6:105456449-105456468 None:intergenic 35.0%
GAAAATATTAGCCCAAAAGG+GGG - Chr6:105458184-105458203 None:intergenic 35.0%
GATATGGTCCCTATTATTGT+TGG + Chr6:105458712-105458731 MsG0680035430.01.T01:intron 35.0%
GATATTAGGCGCATTGTTAA+CGG + Chr6:105455614-105455633 MsG0680035430.01.T01:CDS 35.0%
GATGGTCAACAACAGAATTT+GGG + Chr6:105458987-105459006 MsG0680035430.01.T01:CDS 35.0%
GATGGTCATCAACAGAATTT+GGG + Chr6:105457492-105457511 MsG0680035430.01.T01:CDS 35.0%
GATTTGATGAATCTGAACGA+AGG - Chr6:105457058-105457077 None:intergenic 35.0%
GCTATAGAAGGAAACCAATA+AGG - Chr6:105458525-105458544 None:intergenic 35.0%
GGAAACCAATAAGGAATTTG+AGG - Chr6:105458516-105458535 None:intergenic 35.0%
GTATCCCTATACAAGATTTG+GGG - Chr6:105459561-105459580 None:intergenic 35.0%
GTGAGCCTGAATTAGAATAA+AGG - Chr6:105458050-105458069 None:intergenic 35.0%
TACCTCAATCGGAAAACTAA+AGG - Chr6:105457117-105457136 None:intergenic 35.0%
TAGAATTGCCTCAAGATGTT+TGG - Chr6:105456641-105456660 None:intergenic 35.0%
TAGTGCCTCAAATTCCTTAT+TGG + Chr6:105458508-105458527 MsG0680035430.01.T01:intron 35.0%
TCCCATACAATCTAGAAAAC+TGG - Chr6:105456350-105456369 None:intergenic 35.0%
TCTTCCCCAAATCTTGTATA+GGG + Chr6:105459554-105459573 MsG0680035430.01.T01:three_prime_UTR 35.0%
TGAGCGAATAATACCTCAAT+CGG - Chr6:105457128-105457147 None:intergenic 35.0%
TGATGGTCAACAACAGAATT+TGG + Chr6:105458986-105459005 MsG0680035430.01.T01:CDS 35.0%
TGATGGTCATCAACAGAATT+TGG + Chr6:105457491-105457510 MsG0680035430.01.T01:CDS 35.0%
TGATGTCAAGTACTACTAGT+AGG - Chr6:105458676-105458695 None:intergenic 35.0%
TGCATTTACACCCAGTTTAT+CGG + Chr6:105455849-105455868 MsG0680035430.01.T01:CDS 35.0%
TGCTGAAGGAATAAGGAAAA+TGG + Chr6:105455514-105455533 MsG0680035430.01.T01:CDS 35.0%
TGTAAATGCACAACATTGGT+TGG - Chr6:105455839-105455858 None:intergenic 35.0%
TTAACGGTGAGATTGTAATG+AGG + Chr6:105455630-105455649 MsG0680035430.01.T01:CDS 35.0%
TTCTAAGTCAATGTCTAGGT+AGG + Chr6:105458637-105458656 MsG0680035430.01.T01:intron 35.0%
TTCTTCCCCAAATCTTGTAT+AGG + Chr6:105459553-105459572 MsG0680035430.01.T01:three_prime_UTR 35.0%
TTTGATACCGTAACAATGAC+AGG + Chr6:105459684-105459703 MsG0680035430.01.T01:three_prime_UTR 35.0%
! AGATTCTAGCTGAAAACATG+CGG - Chr6:105456952-105456971 None:intergenic 35.0%
! ATCAGGGCATTAATAACAGT+AGG - Chr6:105457982-105458001 None:intergenic 35.0%
! ATGCGTGTTGTTATTAAGGA+TGG + Chr6:105456025-105456044 MsG0680035430.01.T01:CDS 35.0%
! CAAGTACCCTTCCTTAATTT+TGG + Chr6:105456440-105456459 MsG0680035430.01.T01:intron 35.0%
! CAATTTTGGGCTAACATTGT+AGG + Chr6:105458253-105458272 MsG0680035430.01.T01:intron 35.0%
! CGGATATTTTCCGATAAACT+GGG - Chr6:105455862-105455881 None:intergenic 35.0%
! GAAGATGATGATGTAGTTGT+TGG + Chr6:105455461-105455480 MsG0680035430.01.T01:CDS 35.0%
! GACCAGTTTTCTAGATTGTA+TGG + Chr6:105456345-105456364 MsG0680035430.01.T01:intron 35.0%
! GCAACATATCTACCCTTTTT+GGG - Chr6:105455779-105455798 None:intergenic 35.0%
! TCATATAATGGGATACATGG+TGG + Chr6:105455934-105455953 MsG0680035430.01.T01:CDS 35.0%
! TCATCACGTTGATAGAAGAT+TGG - Chr6:105455356-105455375 None:intergenic 35.0%
! TCGGATATTTTCCGATAAAC+TGG - Chr6:105455863-105455882 None:intergenic 35.0%
! TCTTTCTTTTCTCGCAAAGA+TGG - Chr6:105459269-105459288 None:intergenic 35.0%
!! AAATGTGTATTTTGGGCAGA+TGG + Chr6:105456142-105456161 MsG0680035430.01.T01:intron 35.0%
!! AGTTATATTTGGTGCTGCAT+TGG + Chr6:105456285-105456304 MsG0680035430.01.T01:intron 35.0%
!! ATCTATTGATTCTGGGTCTA+TGG - Chr6:105457080-105457099 None:intergenic 35.0%
!! CAAAATTAAGGAAGGGTACT+TGG - Chr6:105456442-105456461 None:intergenic 35.0%
!! CGATGAGAATCTATTGATTC+TGG - Chr6:105457088-105457107 None:intergenic 35.0%
!! GAGAGAAGAAGCATTTATCA+AGG + Chr6:105455681-105455700 MsG0680035430.01.T01:CDS 35.0%
!! GTTTTGCTTTTGTTAGGGTT+TGG + Chr6:105457302-105457321 MsG0680035430.01.T01:intron 35.0%
!! TATTTCGAATGGGTTTTTCG+CGG + Chr6:105457366-105457385 MsG0680035430.01.T01:intron 35.0%
!! TTTTTGGCACATTTGAACCT+TGG + Chr6:105458754-105458773 MsG0680035430.01.T01:intron 35.0%
!!! AATCCAAGGATGCTGATTTT+GGG + Chr6:105459015-105459034 MsG0680035430.01.T01:CDS 35.0%
!!! AGTGTAATGGTTTTGCTGTT+AGG + Chr6:105455585-105455604 MsG0680035430.01.T01:CDS 35.0%
!!! GTTGCGTCTATTTTTGAAGA+GGG + Chr6:105455794-105455813 MsG0680035430.01.T01:CDS 35.0%
!!! TGTTGCGTCTATTTTTGAAG+AGG + Chr6:105455793-105455812 MsG0680035430.01.T01:CDS 35.0%
!!! TTCCTTTAGTTTTCCGATTG+AGG + Chr6:105457112-105457131 MsG0680035430.01.T01:intron 35.0%
AAAGGAATGTGGATCAGTTG+AGG - Chr6:105456089-105456108 None:intergenic 40.0%
AAATGTTCGTCAAGGAGTAG+AGG + Chr6:105457444-105457463 MsG0680035430.01.T01:CDS 40.0%
AAGATTTGGGGAAGAAAGGA+AGG - Chr6:105459549-105459568 None:intergenic 40.0%
AAGGATGGATCTCGAAATGA+GGG - Chr6:105457013-105457032 None:intergenic 40.0%
AATATGAACAACACAGGCCA+AGG - Chr6:105458774-105458793 None:intergenic 40.0%
ACAAAATCACCAACGGATAG+TGG - Chr6:105456240-105456259 None:intergenic 40.0%
ACAACCAACACCAATCTTCA+TGG - Chr6:105457776-105457795 None:intergenic 40.0%
ACTTTGTACGAGTGATACGT+CGG - Chr6:105455727-105455746 None:intergenic 40.0%
AGAGAAAAGGCCATCATGTT+TGG - Chr6:105456844-105456863 None:intergenic 40.0%
AGATCCATGAAGATTGGTGT+TGG + Chr6:105457769-105457788 MsG0680035430.01.T01:intron 40.0%
AGGTGTCAAAATGTTCGTCA+AGG + Chr6:105457436-105457455 MsG0680035430.01.T01:intron 40.0%
AGTAGAGGAACTATGTCTAG+TGG + Chr6:105457459-105457478 MsG0680035430.01.T01:CDS 40.0%
AGTAGAGGAATTGTGTCTAG+TGG + Chr6:105458954-105458973 MsG0680035430.01.T01:CDS 40.0%
AGTATGTATGCAACATGCAG+GGG + Chr6:105455654-105455673 MsG0680035430.01.T01:CDS 40.0%
AGTGAAGGTGATGAAAGTGA+AGG + Chr6:105455407-105455426 MsG0680035430.01.T01:CDS 40.0%
ATTCACATGGTCTTCATTGC+AGG + Chr6:105457634-105457653 MsG0680035430.01.T01:intron 40.0%
CAGAGGAAACTGATATTGGT+TGG - Chr6:105459064-105459083 None:intergenic 40.0%
CAGTATGTATGCAACATGCA+GGG + Chr6:105455653-105455672 MsG0680035430.01.T01:CDS 40.0%
CCAAAAGCAGTTGTAACAGA+TGG + Chr6:105456379-105456398 MsG0680035430.01.T01:CDS 40.0%
CTCAGGAATATGAACAACAC+AGG - Chr6:105458780-105458799 None:intergenic 40.0%
GAACAAATACCACTATCCGT+TGG + Chr6:105456228-105456247 MsG0680035430.01.T01:CDS 40.0%
GAATTTGGGGAATGAATCCA+AGG + Chr6:105459001-105459020 MsG0680035430.01.T01:CDS 40.0%
GACTACAGCTGAAATTCTAC+CGG - Chr6:105459117-105459136 None:intergenic 40.0%
GGACTTCTAAGTCAATGTCT+AGG + Chr6:105458633-105458652 MsG0680035430.01.T01:intron 40.0%
GGTGATGAAAGTGAAAGTGA+TGG + Chr6:105455383-105455402 MsG0680035430.01.T01:CDS 40.0%
GTTCACTACAGACCCAAAAA+GGG + Chr6:105455764-105455783 MsG0680035430.01.T01:CDS 40.0%
GTTGATCCATGGTTACTACA+AGG + Chr6:105457876-105457895 MsG0680035430.01.T01:intron 40.0%
TATTTGGCTAAGAATGGCCA+AGG + Chr6:105459486-105459505 MsG0680035430.01.T01:three_prime_UTR 40.0%
TCGTAACATTGTAGGTCTTG+TGG + Chr6:105458152-105458171 MsG0680035430.01.T01:intron 40.0%
TGGGTGTAAATGCACAACAT+TGG - Chr6:105455843-105455862 None:intergenic 40.0%
TGGTCAGAGGAAACTGATAT+TGG - Chr6:105459068-105459087 None:intergenic 40.0%
TGGTCCCTATTATTGTTGGA+TGG + Chr6:105458716-105458735 MsG0680035430.01.T01:intron 40.0%
TGTTCACTACAGACCCAAAA+AGG + Chr6:105455763-105455782 MsG0680035430.01.T01:CDS 40.0%
TTCTATCAACGTGATGAAGG+TGG + Chr6:105455359-105455378 MsG0680035430.01.T01:CDS 40.0%
TTTCAAACGTCAGTCATCAG+TGG - Chr6:105456125-105456144 None:intergenic 40.0%
TTTGATATGGACCTTGGCAA+TGG + Chr6:105459173-105459192 MsG0680035430.01.T01:intron 40.0%
! AGTGAAAGTGATGGTAGTGA+AGG + Chr6:105455392-105455411 MsG0680035430.01.T01:CDS 40.0%
! ATTGATGGTCTTCAGTCACA+CGG + Chr6:105455899-105455918 MsG0680035430.01.T01:CDS 40.0%
! CCATCTGTTACAACTGCTTT+TGG - Chr6:105456382-105456401 None:intergenic 40.0%
! CGCAACATATCTACCCTTTT+TGG - Chr6:105455780-105455799 None:intergenic 40.0%
! CGTAACATTGTAGGTCTTGT+GGG + Chr6:105458153-105458172 MsG0680035430.01.T01:intron 40.0%
! GATTGAGATCTGCTTGTTGA+GGG + Chr6:105457324-105457343 MsG0680035430.01.T01:intron 40.0%
! TCTAGTGGTGATGAAGATGA+TGG + Chr6:105457474-105457493 MsG0680035430.01.T01:CDS 40.0%
! TGAGGCACTAATGTAGCTAT+GGG - Chr6:105458498-105458517 None:intergenic 40.0%
! TGATGATGTAGTTGTTGGTG+AGG + Chr6:105455466-105455485 MsG0680035430.01.T01:CDS 40.0%
! TGTAGTTGTTGGTGAGGAAA+TGG + Chr6:105455472-105455491 MsG0680035430.01.T01:CDS 40.0%
! TTGAGGCACTAATGTAGCTA+TGG - Chr6:105458499-105458518 None:intergenic 40.0%
! TTGTTGGTGAGGAAATGGTA+AGG + Chr6:105455477-105455496 MsG0680035430.01.T01:CDS 40.0%
!! AGATGGTGATGGTTCTATGA+GGG + Chr6:105456396-105456415 MsG0680035430.01.T01:CDS 40.0%
!! GTTTGTTGGCTTGAAATGCA+AGG + Chr6:105458307-105458326 MsG0680035430.01.T01:intron 40.0%
!! TTATTTCTGCTTTGGCGATG+TGG + Chr6:105456180-105456199 MsG0680035430.01.T01:CDS 40.0%
!! TTTTGGGTCTGTAGTGAACA+CGG - Chr6:105455763-105455782 None:intergenic 40.0%
!!! GAATCCAAGGATGCTGATTT+TGG + Chr6:105459014-105459033 MsG0680035430.01.T01:CDS 40.0%
!!! TATCCGTTGGTGATTTTGTC+TGG + Chr6:105456241-105456260 MsG0680035430.01.T01:intron 40.0%
AAGTAGCATGGAGGGATTAG+CGG - Chr6:105459092-105459111 None:intergenic 45.0%
AATTCTACCAGCGTAGCAAG+CGG - Chr6:105457601-105457620 None:intergenic 45.0%
AGAGGAATTGTGTCTAGTGG+TGG + Chr6:105458957-105458976 MsG0680035430.01.T01:CDS 45.0%
AGGGAACCTTGTAGTAACCA+TGG - Chr6:105457885-105457904 None:intergenic 45.0%
AGGTCAACAAGGTGAACATG+TGG - Chr6:105457925-105457944 None:intergenic 45.0%
ATGGATCTCGAAATGAGGGA+GGG - Chr6:105457009-105457028 None:intergenic 45.0%
ATGGTGAAGGATTGTGCTGA+AGG - Chr6:105457945-105457964 None:intergenic 45.0%
ATGTCGAGTCGAGTATGTCA+AGG + Chr6:105459421-105459440 MsG0680035430.01.T01:three_prime_UTR 45.0%
ATTTGGGGAAGAAAGGAAGG+AGG - Chr6:105459546-105459565 None:intergenic 45.0%
CAGAGGAAACTGATGTTGGT+TGG - Chr6:105457556-105457575 None:intergenic 45.0%
CAGCCAGACAAAATCACCAA+CGG - Chr6:105456247-105456266 None:intergenic 45.0%
CAGCTGTAGTCTCATTCACA+TGG + Chr6:105459126-105459145 MsG0680035430.01.T01:CDS 45.0%
GAAGGATGGATCTCGAAATG+AGG - Chr6:105457014-105457033 None:intergenic 45.0%
GATTGTGCTGAAGGTCAACA+AGG - Chr6:105457936-105457955 None:intergenic 45.0%
GCAGTATGTATGCAACATGC+AGG + Chr6:105455652-105455671 MsG0680035430.01.T01:CDS 45.0%
GCAGTTGTAACAGATGGTGA+TGG + Chr6:105456385-105456404 MsG0680035430.01.T01:CDS 45.0%
GGTGATGAAAGTGAAGGTCA+TGG + Chr6:105455413-105455432 MsG0680035430.01.T01:CDS 45.0%
TATCAACGTGATGAAGGTGG+AGG + Chr6:105455362-105455381 MsG0680035430.01.T01:CDS 45.0%
TGGTCAGAGGAAACTGATGT+TGG - Chr6:105457560-105457579 None:intergenic 45.0%
TTCTATGAGGGAGGCGATAA+AGG + Chr6:105456408-105456427 MsG0680035430.01.T01:CDS 45.0%
TTCTTAGTGAACCCAACACC+AGG - Chr6:105455977-105455996 None:intergenic 45.0%
TTGCCATGCACTCTTCTCAT+TGG + Chr6:105459511-105459530 MsG0680035430.01.T01:three_prime_UTR 45.0%
! AGTGAAGGTCATGGTAGTGA+AGG + Chr6:105455422-105455441 MsG0680035430.01.T01:CDS 45.0%
! ATGGGTTTTTCGCGGCAATT+TGG + Chr6:105457374-105457393 MsG0680035430.01.T01:intron 45.0%
! CATTGGTTGGAGTAGGTTCA+TGG - Chr6:105455826-105455845 None:intergenic 45.0%
! CTCGTACAAAGTGTCCAACT+AGG + Chr6:105455735-105455754 MsG0680035430.01.T01:CDS 45.0%
! GGATTGAGATCTGCTTGTTG+AGG + Chr6:105457323-105457342 MsG0680035430.01.T01:intron 45.0%
! TCTAGTGGTGGTGATGATGA+TGG + Chr6:105458969-105458988 MsG0680035430.01.T01:CDS 45.0%
! TGCACAACATTGGTTGGAGT+AGG - Chr6:105455833-105455852 None:intergenic 45.0%
! TTCTAGCTGAAAACATGCGG+TGG - Chr6:105456949-105456968 None:intergenic 45.0%
!! ATTTGGTGCTGCATTGGTGA+TGG + Chr6:105456291-105456310 MsG0680035430.01.T01:intron 45.0%
!! CAGATGGTGATGGTTCTATG+AGG + Chr6:105456395-105456414 MsG0680035430.01.T01:CDS 45.0%
!!! CAAGGATGCTGATTTTGGGA+CGG + Chr6:105459019-105459038 MsG0680035430.01.T01:CDS 45.0%
AATGGGATACATGGTGGCTC+AGG + Chr6:105455940-105455959 MsG0680035430.01.T01:CDS 50.0%
AGCTGAGGGGTTCGAAATGA+TGG - Chr6:105456981-105457000 None:intergenic 50.0%
AGGGTGGATATCCTGGTGTT+GGG + Chr6:105455963-105455982 MsG0680035430.01.T01:CDS 50.0%
ATCTCACCAGACCTCATCCT+CGG - Chr6:105457526-105457545 None:intergenic 50.0%
ATTCTACCGGCGAAGTAGCA+TGG - Chr6:105459104-105459123 None:intergenic 50.0%
CCATGCACTCTTCTCATTGG+TGG + Chr6:105459514-105459533 MsG0680035430.01.T01:three_prime_UTR 50.0%
CGTCCCAAAATCAGCATCCT+TGG - Chr6:105459021-105459040 None:intergenic 50.0%
GAATTTGGGGAATGAACCCG+AGG + Chr6:105457506-105457525 MsG0680035430.01.T01:CDS 50.0%
GATGGATCTCGAAATGAGGG+AGG - Chr6:105457010-105457029 None:intergenic 50.0%
GGCACTAATGTAGCTATGGG+AGG - Chr6:105458495-105458514 None:intergenic 50.0%
TAGTGAACACGGAGCCTAGT+TGG - Chr6:105455752-105455771 None:intergenic 50.0%
TATGAGGGAGGCGATAAAGG+CGG + Chr6:105456411-105456430 MsG0680035430.01.T01:CDS 50.0%
! AACTGATGTTGGTTGGAGCG+TGG - Chr6:105457549-105457568 None:intergenic 50.0%
! AAGAGTGCATGGCAAGACCT+TGG - Chr6:105459506-105459525 None:intergenic 50.0%
! CCACCAATGAGAAGAGTGCA+TGG - Chr6:105459517-105459536 None:intergenic 50.0%
! TGTGGGTTTCACCCCCTTTT+GGG + Chr6:105458170-105458189 MsG0680035430.01.T01:intron 50.0%
! TTGTGGGTTTCACCCCCTTT+TGG + Chr6:105458169-105458188 MsG0680035430.01.T01:intron 50.0%
!! AGGAGGAGGGGAACTTGTTA+GGG - Chr6:105456915-105456934 None:intergenic 50.0%
!! AGGGATTAGCTGTTGGTCAG+AGG - Chr6:105457573-105457592 None:intergenic 50.0%
!! TGGTGATGGTTCTATGAGGG+AGG + Chr6:105456399-105456418 MsG0680035430.01.T01:CDS 50.0%
ACTCGTCGCAAGCTGAAGGA+TGG - Chr6:105457028-105457047 None:intergenic 55.0%
AGACACTCGTCGCAAGCTGA+AGG - Chr6:105457032-105457051 None:intergenic 55.0%
ATGAACCCGAGGATGAGGTC+TGG + Chr6:105457517-105457536 MsG0680035430.01.T01:CDS 55.0%
GAGGGTGGATATCCTGGTGT+TGG + Chr6:105455962-105455981 MsG0680035430.01.T01:CDS 55.0%
GGATACATGGTGGCTCAGGA+GGG + Chr6:105455944-105455963 MsG0680035430.01.T01:CDS 55.0%
TACAGTTGCGGCCATTGCCA+AGG - Chr6:105459187-105459206 None:intergenic 55.0%
TACCGGCGAAGTAGCATGGA+GGG - Chr6:105459100-105459119 None:intergenic 55.0%
TCTCACCAGACCTCATCCTC+GGG - Chr6:105457525-105457544 None:intergenic 55.0%
! ATCCCTCCATGCTACTTCGC+CGG + Chr6:105459095-105459114 MsG0680035430.01.T01:CDS 55.0%
! GAGGAGGAGGGGAACTTGTT+AGG - Chr6:105456916-105456935 None:intergenic 55.0%
!! GGCATGGAGGGATTAGCTGT+TGG - Chr6:105457580-105457599 None:intergenic 55.0%
AGCGTAGCAAGCGGCATGGA+GGG - Chr6:105457592-105457611 None:intergenic 60.0%
ATGCGGTGGTCGCAAGAGAG+AGG - Chr6:105456935-105456954 None:intergenic 60.0%
CTACCGGCGAAGTAGCATGG+AGG - Chr6:105459101-105459120 None:intergenic 60.0%
GCTCAGGAGGGTGGATATCC+TGG + Chr6:105455956-105455975 MsG0680035430.01.T01:CDS 60.0%
GGGATACATGGTGGCTCAGG+AGG + Chr6:105455943-105455962 MsG0680035430.01.T01:CDS 60.0%
GGGGAATGAACCCGAGGATG+AGG + Chr6:105457512-105457531 MsG0680035430.01.T01:CDS 60.0%
GGTCGCAAGAGAGAGGAGGA+GGG - Chr6:105456928-105456947 None:intergenic 60.0%
GTCGCAAGAGAGAGGAGGAG+GGG - Chr6:105456927-105456946 None:intergenic 60.0%
TACATGGTGGCTCAGGAGGG+TGG + Chr6:105455947-105455966 MsG0680035430.01.T01:CDS 60.0%
TACCAGCGTAGCAAGCGGCA+TGG - Chr6:105457596-105457615 None:intergenic 60.0%
TGGTCGCAAGAGAGAGGAGG+AGG - Chr6:105456929-105456948 None:intergenic 60.0%
! AGCATGGAGGGATTAGCGGC+TGG - Chr6:105459088-105459107 None:intergenic 60.0%
! AGGGATTAGCGGCTGGTCAG+AGG - Chr6:105459081-105459100 None:intergenic 60.0%
CAGCGTAGCAAGCGGCATGG+AGG - Chr6:105457593-105457612 None:intergenic 65.0%
CGGTGGTCGCAAGAGAGAGG+AGG - Chr6:105456932-105456951 None:intergenic 65.0%
! CTCCATGCCGCTTGCTACGC+TGG + Chr6:105457591-105457610 MsG0680035430.01.T01:intron 65.0%
AGGGAGGGTCGCGAGCTGAG+GGG - Chr6:105456994-105457013 None:intergenic 70.0%
GAGGGAGGGTCGCGAGCTGA+GGG - Chr6:105456995-105457014 None:intergenic 70.0%
TGAGGGAGGGTCGCGAGCTG+AGG - Chr6:105456996-105457015 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 105455350 105459734 105455350 ID=MsG0680035430.01;Name=MsG0680035430.01
Chr6 mRNA 105455350 105459734 105455350 ID=MsG0680035430.01.T01;Parent=MsG0680035430.01;Name=MsG0680035430.01.T01;_AED=0.30;_eAED=0.38;_QI=0|0.2|0.16|1|1|1|6|340|447
Chr6 exon 105455350 105456078 105455350 ID=MsG0680035430.01.T01:exon:21242;Parent=MsG0680035430.01.T01
Chr6 exon 105456161 105456249 105456161 ID=MsG0680035430.01.T01:exon:21243;Parent=MsG0680035430.01.T01
Chr6 exon 105456351 105456432 105456351 ID=MsG0680035430.01.T01:exon:21244;Parent=MsG0680035430.01.T01
Chr6 exon 105457438 105457538 105457438 ID=MsG0680035430.01.T01:exon:21245;Parent=MsG0680035430.01.T01
Chr6 exon 105458953 105459160 105458953 ID=MsG0680035430.01.T01:exon:21246;Parent=MsG0680035430.01.T01
Chr6 exon 105459260 105459734 105459260 ID=MsG0680035430.01.T01:exon:21247;Parent=MsG0680035430.01.T01
Chr6 CDS 105455350 105456078 105455350 ID=MsG0680035430.01.T01:cds;Parent=MsG0680035430.01.T01
Chr6 CDS 105456161 105456249 105456161 ID=MsG0680035430.01.T01:cds;Parent=MsG0680035430.01.T01
Chr6 CDS 105456351 105456432 105456351 ID=MsG0680035430.01.T01:cds;Parent=MsG0680035430.01.T01
Chr6 CDS 105457438 105457538 105457438 ID=MsG0680035430.01.T01:cds;Parent=MsG0680035430.01.T01
Chr6 CDS 105458953 105459160 105458953 ID=MsG0680035430.01.T01:cds;Parent=MsG0680035430.01.T01
Chr6 CDS 105459260 105459394 105459260 ID=MsG0680035430.01.T01:cds;Parent=MsG0680035430.01.T01
Chr6 three_prime_UTR 105459395 105459734 105459395 ID=MsG0680035430.01.T01:three_prime_utr;Parent=MsG0680035430.01.T01
Gene Sequence

>MsG0680035430.01.T01

TTGCCAATCTTCTATCAACGTGATGAAGGTGGAGGTGATGAAAGTGAAAGTGATGGTAGTGAAGGTGATGAAAGTGAAGGTCATGGTAGTGAAGGTGATAACAATTTAGCTGAAGATGATGATGTAGTTGTTGGTGAGGAAATGGTAAGGATAAATTCATTAACTGCTGAAGGAATAAGGAAAATGGAATTTGCGAGTGTTGATGAAGCTTACGATTTTTATTATAAGTACGGTAAGTGTAATGGTTTTGCTGTTAGGAATTGTGATATTAGGCGCATTGTTAACGGTGAGATTGTAATGAGGCAGTATGTATGCAACATGCAGGGGTTCAGAGAGAAGAAGCATTTATCAAGGTTAGATAGGCAAAGAGATCACCGACGTATCACTCGTACAAAGTGTCCAACTAGGCTCCGTGTTCACTACAGACCCAAAAAGGGTAGATATGTTGCGTCTATTTTTGAAGAGGGTCACAACCATGAACCTACTCCAACCAATGTTGTGCATTTACACCCAGTTTATCGGAAAATATCCGAGGAAGATAAAGCACAAATTGATGGTCTTCAGTCACACGGAATAAGAACTTGTCATATAATGGGATACATGGTGGCTCAGGAGGGTGGATATCCTGGTGTTGGGTTCACTAAGAAACATCTGTACAATTACTTTGACAAAAAAATGCGTGTTGTTATTAAGGATGGTGATGTTTCAGCTGATTTAAACTATCTGAATATGGCACAAGCAGATCAGATTATTTCTGCTTTGGCGATGTGGTTTAATTTGACACAACGTACAACAAGAACAAATACCACTATCCGTTGTTTTCTAGATTGTATGGGACAAAAACTTCCAAAAGCAGTTGTAACAGATGGTGATGGTTCTATGAGGGAGGCGATAAAGGCGGTGTCAAAATGTTCGTCAAGGAGTAGAGGAACTATGTCTAGTGGTGATGAAGATGATGGTCATCAACAGAATTTGGGGAATGAACCCGAGGATGAGGTCTGGAGTAGAGGAATTGTGTCTAGTGGTGGTGATGATGATGGTCAACAACAGAATTTGGGGAATGAATCCAAGGATGCTGATTTTGGGACGGTTTTGATGAGATTCACGCTCCAACCAATATCAGTTTCCTCTGACCAGCCGCTAATCCCTCCATGCTACTTCGCCGGTAGAATTTCAGCTGTAGTCTCATTCACATGGTCTTCATTGAAGGTTCTTCCATCTTTGCGAGAAAAGAAAGATGAACTCTTGTTAAGAGAATTGGTTAGAAGATGGTCAAATCACAAAGATATGAGATTGGAGAAAGTACAGAAAAATACGATCCAATACACTTTGCAGAAACAATGA
Protein sequence

>MsG0680035430.01.T01

LPIFYQRDEGGGDESESDGSEGDESEGHGSEGDNNLAEDDDVVVGEEMVRINSLTAEGIRKMEFASVDEAYDFYYKYGKCNGFAVRNCDIRRIVNGEIVMRQYVCNMQGFREKKHLSRLDRQRDHRRITRTKCPTRLRVHYRPKKGRYVASIFEEGHNHEPTPTNVVHLHPVYRKISEEDKAQIDGLQSHGIRTCHIMGYMVAQEGGYPGVGFTKKHLYNYFDKKMRVVIKDGDVSADLNYLNMAQADQIISALAMWFNLTQRTTRTNTTIRCFLDCMGQKLPKAVVTDGDGSMREAIKAVSKCSSRSRGTMSSGDEDDGHQQNLGNEPEDEVWSRGIVSSGGDDDGQQQNLGNESKDADFGTVLMRFTLQPISVSSDQPLIPPCYFAGRISAVVSFTWSSLKVLPSLREKKDELLLRELVRRWSNHKDMRLEKVQKNTIQYTLQKQ*