AlfalfaGEDB | MsG0780036061.01

M. sativa cultivar ZhongmuNo.1 / MsG0780036061.01

KEGG: -
GO: GO:0003735 GO:0005622 GO:0005840 GO:0006412
PFAM: PF00181

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036061.01.T01	XP_013447445.1	98.558	208	3	0	1	208	1	208	6.82E-147	417

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036061.01.T01	P0C8K6	42.857	217	77	5	7	207	8	193	2.60E-41	149

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036061.01.T01	A0A072TWF8	98.558	208	3	0	1	208	1	208	3.26e-147	417

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0380016183.01	MsG0780036061.01	0.815065	1.118797e-51	7.635017e-49
MsG0480021417.01	MsG0780036061.01	0.807210	5.649892e-50	3.128328e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036061.01.T01	MTR_7g007070	98.558	208	3	1	208	1	208	8.25e-151	417
MsG0780036061.01.T01	MTR_3g035700	53.448	58	27	21	78	29	86	8.25e-14	65.9
MsG0780036061.01.T01	MTR_0002s0350	53.448	58	27	21	78	82	139	1.52e-13	66.2
MsG0780036061.01.T01	MTR_4g047920	53.448	58	27	21	78	143	200	1.15e-12	65.1
MsG0780036061.01.T01	MTR_4g051430	53.448	58	27	21	78	143	200	1.19e-12	66.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036061.01.T01	ATMG00560	40.873	252	100	11	1	207	1	248	2.93e-36	130
MsG0780036061.01.T01	AT2G07715	40.000	250	105	11	1	207	1	248	1.24e-35	129
MsG0780036061.01.T01	ATCG00830	53.448	58	27	0	21	78	40	97	4.45e-13	66.6
MsG0780036061.01.T01	ATCG01310	53.448	58	27	0	21	78	40	97	4.45e-13	66.6

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Find 63 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACGATCCTGCAACAAA+CGG	0.532110	7:+1968748	MsG0780036061.01.T01:CDS
AAAGGAAAACTGCAATTTCG+TGG	0.550482	7:+1969022	MsG0780036061.01.T01:CDS
AACGTTTATGGCCGCCGCCG+CGG	0.570918	7:-1968528	None:intergenic
ACCGCCGGCCGTAACTGTTA+CGG	0.496435	7:+1968487	MsG0780036061.01.T01:CDS
ACCTCCTTCCACCGCGGCGG+CGG	0.434065	7:+1968517	MsG0780036061.01.T01:CDS
AGAAATTGGAGATTAGGAAT+TGG	0.386894	7:+1968965	MsG0780036061.01.T01:CDS
AGACAATTCACATTCGGTGC+CGG	0.562885	7:+1968460	MsG0780036061.01.T01:CDS
AGGATCGTGTTTGAGGAATC+TGG	0.421010	7:-1968737	None:intergenic
AGGTTTACCGAGGATTGCAG+TGG	0.627488	7:+1968900	MsG0780036061.01.T01:CDS
ATAGTGATGTTTGGATGAAT+AGG	0.385359	7:+1968995	MsG0780036061.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAATTGGAGATTAGGAAT+TGG	+	Chr7:1968965-1968984	MsG0780036061.01.T01:CDS	30.0%
ATAGTGATGTTTGGATGAAT+AGG	+	Chr7:1968995-1969014	MsG0780036061.01.T01:CDS	30.0%
TAACTCGATGTAAACGTTTA+TGG	-	Chr7:1968543-1968562	None:intergenic	30.0%
AAAGGAAAACTGCAATTTCG+TGG	+	Chr7:1969022-1969041	MsG0780036061.01.T01:CDS	35.0%
ATGGTGAGAAATTGGAGATT+AGG	+	Chr7:1968959-1968978	MsG0780036061.01.T01:CDS	35.0%
GGAAGAAGAATAGTGATGTT+TGG	+	Chr7:1968986-1969005	MsG0780036061.01.T01:CDS	35.0%
TCACTGAGACAATTCACATT+CGG	+	Chr7:1968454-1968473	MsG0780036061.01.T01:CDS	35.0%
TGAAAGTGAATCTGTTTCGT+CGG	+	Chr7:1968873-1968892	MsG0780036061.01.T01:CDS	35.0%
AAACACGATCCTGCAACAAA+CGG	+	Chr7:1968748-1968767	MsG0780036061.01.T01:CDS	40.0%
CCTTTCACACCAAAAAACTC+CGG	-	Chr7:1968937-1968956	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	1968433	1969059	1968433	ID=MsG0780036061.01;Name=MsG0780036061.01
Chr7	mRNA	1968433	1969059	1968433	ID=MsG0780036061.01.T01;Parent=MsG0780036061.01;Name=MsG0780036061.01.T01;_AED=0.43;_eAED=0.43;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|208
Chr7	exon	1968433	1969059	1968433	ID=MsG0780036061.01.T01:exon:38380;Parent=MsG0780036061.01.T01
Chr7	CDS	1968433	1969059	1968433	ID=MsG0780036061.01.T01:cds;Parent=MsG0780036061.01.T01

Gene Sequence

>MsG0780036061.01.T01

ATGTCAGGAGGAGTGAAGAGATCACTGAGACAATTCACATTCGGTGCCGGAAAAACCGCCGGCCGTAACTGTTACGGCCGCATCACCTCCTTCCACCGCGGCGGCGGCCATAAACGTTTACATCGAGTTATCGATCTCAAACGCAACACTTCTTCTTCCGTCGGTATCGTCGAACGCATCGAATACGATCCTAACCGTTCATCTCGTATCGCTCTCGTTCGTTGGCTCAACGGTATCCAACCACCTCCACAACGCACCGCAACCACCGCCACCGCCGCCGCTGTATCCACCGCATCATCCTCCTCCAGATTCCTCAAACACGATCCTGCAACAAACGGAGAAATTCGTGGTGTGTTTGGTTTGAATTCGTTGCTTCCACAAATCCACGCTGGAAGTAGTTCAGGGAAGGTGTTTCTGTCGGCGTTTTCGGGGAAGGGAGATGAAAGTGAATCTGTTTCGTCGGCGTTAGGTTTACCGAGGATTGCAGTGGCGGCGTCAAGACCGGAGTTTTTTGGTGTGAAAGGGGATGGTGAGAAATTGGAGATTAGGAATTGGAAGAAGAATAGTGATGTTTGGATGAATAGGAATAAAAGGAAAACTGCAATTTCGTGGCAGAATATTGCTTGA

Protein sequence

>MsG0780036061.01.T01

MSGGVKRSLRQFTFGAGKTAGRNCYGRITSFHRGGGHKRLHRVIDLKRNTSSSVGIVERIEYDPNRSSRIALVRWLNGIQPPPQRTATTATAAAVSTASSSSRFLKHDPATNGEIRGVFGLNSLLPQIHAGSSSGKVFLSAFSGKGDESESVSSALGLPRIAVAASRPEFFGVKGDGEKLEIRNWKKNSDVWMNRNKRKTAISWQNIA*