AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780036261.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036261.01.T02 MTR_7g010650 97.080 274 8 0 1 274 1 274 0.0 538
MsG0780036261.01.T02 MTR_7g010650 98.315 178 3 0 1 178 1 178 1.64e-125 355
MsG0780036261.01.T02 MTR_8g087720 48.837 258 129 3 7 261 7 264 1.94e-79 241
MsG0780036261.01.T02 MTR_2g017660 50.000 214 106 1 37 249 39 252 7.99e-76 232
MsG0780036261.01.T02 MTR_4g084880 49.345 229 112 3 37 261 35 263 8.37e-76 232
MsG0780036261.01.T02 MTR_8g087710 46.725 229 120 2 35 261 37 265 1.42e-72 224
MsG0780036261.01.T02 MTR_4g006730 45.902 244 130 1 23 264 61 304 1.78e-71 222
MsG0780036261.01.T02 MTR_2g017590 49.533 214 107 1 37 249 36 249 8.52e-71 219
MsG0780036261.01.T02 MTR_2g104940 46.696 227 118 1 37 260 80 306 1.23e-70 220
MsG0780036261.01.T02 MTR_2g017570 47.034 236 121 3 28 261 31 264 2.07e-70 218
MsG0780036261.01.T02 MTR_2g017610 47.034 236 121 3 28 261 31 264 3.63e-70 218
MsG0780036261.01.T02 MTR_2g017620 46.121 232 123 2 35 264 22 253 5.22e-69 214
MsG0780036261.01.T02 MTR_2g017620 46.121 232 123 2 35 264 36 267 8.59e-69 214
MsG0780036261.01.T02 MTR_4g006630 46.544 217 114 1 50 264 1 217 1.25e-65 204
MsG0780036261.01.T02 MTR_4g006730 46.083 217 115 1 50 264 1 217 6.51e-65 202
MsG0780036261.01.T02 MTR_5g079570 45.291 223 120 2 37 258 40 261 1.92e-63 200
MsG0780036261.01.T02 MTR_1g097840 43.779 217 122 0 37 253 74 290 2.70e-62 198
MsG0780036261.01.T02 MTR_3g008920 47.826 207 106 2 37 242 26 231 5.58e-62 196
MsG0780036261.01.T02 MTR_2g017620 49.730 185 91 2 82 264 2 186 1.52e-58 185
MsG0780036261.01.T02 MTR_5g063930 43.636 220 118 2 37 252 37 254 4.04e-57 184
MsG0780036261.01.T02 MTR_8g087720 46.154 195 103 2 7 199 7 201 3.65e-52 169
MsG0780036261.01.T02 MTR_1g070385 38.991 218 133 0 33 250 58 275 1.17e-48 172
MsG0780036261.01.T02 MTR_4g006730 45.763 177 96 0 23 199 61 237 3.68e-47 158
MsG0780036261.01.T02 MTR_8g087720 44.382 178 97 2 7 182 7 184 3.42e-44 149
MsG0780036261.01.T02 MTR_1g097840 41.718 163 95 0 37 199 74 236 1.97e-39 138
MsG0780036261.01.T02 MTR_4g006650 43.972 141 70 1 38 178 5 136 2.82e-28 110
MsG0780036261.01.T02 MTR_5g012810 36.279 215 126 4 37 242 19 231 2.85e-26 103
MsG0780036261.01.T02 MTR_8g013680 33.051 236 145 6 26 250 8 241 5.26e-25 100
MsG0780036261.01.T02 MTR_2g101370 33.480 227 134 6 37 250 20 242 1.21e-24 99.4
MsG0780036261.01.T02 MTR_1g115405 33.188 229 137 4 37 253 21 245 5.08e-24 97.8
MsG0780036261.01.T02 MTR_1g006490 35.849 212 128 5 37 242 19 228 5.96e-24 97.4
MsG0780036261.01.T02 MTR_1g006590 33.175 211 135 4 37 242 19 228 5.82e-22 92.0
MsG0780036261.01.T02 MTR_4g063090 32.468 231 140 6 42 262 26 250 3.77e-21 90.1
MsG0780036261.01.T02 MTR_1g077540 28.631 241 149 7 37 260 21 255 3.86e-21 90.1
MsG0780036261.01.T02 MTR_6g069040 31.140 228 146 6 37 253 21 248 8.38e-21 89.4
MsG0780036261.01.T02 MTR_7g103030 32.589 224 143 4 37 252 21 244 8.41e-21 89.0
MsG0780036261.01.T02 MTR_4g415300 30.131 229 140 8 35 245 54 280 2.45e-19 85.9
MsG0780036261.01.T02 MTR_2g060360 30.328 244 147 8 37 265 19 254 7.54e-19 84.0
MsG0780036261.01.T02 MTR_3g118010 29.730 222 138 7 35 239 35 255 5.89e-17 79.0
MsG0780036261.01.T02 MTR_5g082070 28.444 225 138 7 41 245 59 280 6.10e-17 79.3
MsG0780036261.01.T02 MTR_7g023350 31.602 231 136 7 37 251 21 245 1.55e-16 77.4
MsG0780036261.01.T02 MTR_2g094270 28.692 237 139 7 27 239 35 265 1.69e-16 77.8
MsG0780036261.01.T02 MTR_7g101190 29.386 228 137 7 35 239 37 263 7.33e-16 76.3
MsG0780036261.01.T02 MTR_3g070210 27.511 229 147 6 35 245 53 280 8.20e-16 75.9
MsG0780036261.01.T02 MTR_5g010150 27.966 236 150 7 35 251 50 284 8.75e-16 75.9
MsG0780036261.01.T02 MTR_8g098375 27.966 236 150 7 35 251 50 284 9.85e-16 75.9
MsG0780036261.01.T02 MTR_4g059390 28.070 228 140 7 35 239 37 263 7.64e-15 73.2
MsG0780036261.01.T02 MTR_2g094270 27.650 217 130 6 27 222 35 245 1.38e-12 66.6
MsG0780036261.01.T02 MTR_1g095070 27.136 199 122 6 79 259 24 217 3.26e-12 64.7
MsG0780036261.01.T02 MTR_3g070210 27.749 191 122 5 41 216 59 248 1.45e-11 63.9
MsG0780036261.01.T02 MTR_4g075590 26.316 171 103 5 90 237 90 260 7.62e-11 62.0
MsG0780036261.01.T01 MTR_7g010650 97.080 274 8 0 1 274 1 274 0.0 538
MsG0780036261.01.T01 MTR_7g010650 98.315 178 3 0 1 178 1 178 1.64e-125 355
MsG0780036261.01.T01 MTR_8g087720 48.837 258 129 3 7 261 7 264 1.94e-79 241
MsG0780036261.01.T01 MTR_2g017660 50.000 214 106 1 37 249 39 252 7.99e-76 232
MsG0780036261.01.T01 MTR_4g084880 49.345 229 112 3 37 261 35 263 8.37e-76 232
MsG0780036261.01.T01 MTR_8g087710 46.725 229 120 2 35 261 37 265 1.42e-72 224
MsG0780036261.01.T01 MTR_4g006730 45.902 244 130 1 23 264 61 304 1.78e-71 222
MsG0780036261.01.T01 MTR_2g017590 49.533 214 107 1 37 249 36 249 8.52e-71 219
MsG0780036261.01.T01 MTR_2g104940 46.696 227 118 1 37 260 80 306 1.23e-70 220
MsG0780036261.01.T01 MTR_2g017570 47.034 236 121 3 28 261 31 264 2.07e-70 218
MsG0780036261.01.T01 MTR_2g017610 47.034 236 121 3 28 261 31 264 3.63e-70 218
MsG0780036261.01.T01 MTR_2g017620 46.121 232 123 2 35 264 22 253 5.22e-69 214
MsG0780036261.01.T01 MTR_2g017620 46.121 232 123 2 35 264 36 267 8.59e-69 214
MsG0780036261.01.T01 MTR_4g006630 46.544 217 114 1 50 264 1 217 1.25e-65 204
MsG0780036261.01.T01 MTR_4g006730 46.083 217 115 1 50 264 1 217 6.51e-65 202
MsG0780036261.01.T01 MTR_5g079570 45.291 223 120 2 37 258 40 261 1.92e-63 200
MsG0780036261.01.T01 MTR_1g097840 43.779 217 122 0 37 253 74 290 2.70e-62 198
MsG0780036261.01.T01 MTR_3g008920 47.826 207 106 2 37 242 26 231 5.58e-62 196
MsG0780036261.01.T01 MTR_2g017620 49.730 185 91 2 82 264 2 186 1.52e-58 185
MsG0780036261.01.T01 MTR_5g063930 43.636 220 118 2 37 252 37 254 4.04e-57 184
MsG0780036261.01.T01 MTR_8g087720 46.154 195 103 2 7 199 7 201 3.65e-52 169
MsG0780036261.01.T01 MTR_1g070385 38.991 218 133 0 33 250 58 275 1.17e-48 172
MsG0780036261.01.T01 MTR_4g006730 45.763 177 96 0 23 199 61 237 3.68e-47 158
MsG0780036261.01.T01 MTR_8g087720 44.382 178 97 2 7 182 7 184 3.42e-44 149
MsG0780036261.01.T01 MTR_1g097840 41.718 163 95 0 37 199 74 236 1.97e-39 138
MsG0780036261.01.T01 MTR_4g006650 43.972 141 70 1 38 178 5 136 2.82e-28 110
MsG0780036261.01.T01 MTR_5g012810 36.279 215 126 4 37 242 19 231 2.85e-26 103
MsG0780036261.01.T01 MTR_8g013680 33.051 236 145 6 26 250 8 241 5.26e-25 100
MsG0780036261.01.T01 MTR_2g101370 33.480 227 134 6 37 250 20 242 1.21e-24 99.4
MsG0780036261.01.T01 MTR_1g115405 33.188 229 137 4 37 253 21 245 5.08e-24 97.8
MsG0780036261.01.T01 MTR_1g006490 35.849 212 128 5 37 242 19 228 5.96e-24 97.4
MsG0780036261.01.T01 MTR_1g006590 33.175 211 135 4 37 242 19 228 5.82e-22 92.0
MsG0780036261.01.T01 MTR_4g063090 32.468 231 140 6 42 262 26 250 3.77e-21 90.1
MsG0780036261.01.T01 MTR_1g077540 28.631 241 149 7 37 260 21 255 3.86e-21 90.1
MsG0780036261.01.T01 MTR_6g069040 31.140 228 146 6 37 253 21 248 8.38e-21 89.4
MsG0780036261.01.T01 MTR_7g103030 32.589 224 143 4 37 252 21 244 8.41e-21 89.0
MsG0780036261.01.T01 MTR_4g415300 30.131 229 140 8 35 245 54 280 2.45e-19 85.9
MsG0780036261.01.T01 MTR_2g060360 30.328 244 147 8 37 265 19 254 7.54e-19 84.0
MsG0780036261.01.T01 MTR_3g118010 29.730 222 138 7 35 239 35 255 5.89e-17 79.0
MsG0780036261.01.T01 MTR_5g082070 28.444 225 138 7 41 245 59 280 6.10e-17 79.3
MsG0780036261.01.T01 MTR_7g023350 31.602 231 136 7 37 251 21 245 1.55e-16 77.4
MsG0780036261.01.T01 MTR_2g094270 28.692 237 139 7 27 239 35 265 1.69e-16 77.8
MsG0780036261.01.T01 MTR_7g101190 29.386 228 137 7 35 239 37 263 7.33e-16 76.3
MsG0780036261.01.T01 MTR_3g070210 27.511 229 147 6 35 245 53 280 8.20e-16 75.9
MsG0780036261.01.T01 MTR_5g010150 27.966 236 150 7 35 251 50 284 8.75e-16 75.9
MsG0780036261.01.T01 MTR_8g098375 27.966 236 150 7 35 251 50 284 9.85e-16 75.9
MsG0780036261.01.T01 MTR_4g059390 28.070 228 140 7 35 239 37 263 7.64e-15 73.2
MsG0780036261.01.T01 MTR_2g094270 27.650 217 130 6 27 222 35 245 1.38e-12 66.6
MsG0780036261.01.T01 MTR_1g095070 27.136 199 122 6 79 259 24 217 3.26e-12 64.7
MsG0780036261.01.T01 MTR_3g070210 27.749 191 122 5 41 216 59 248 1.45e-11 63.9
MsG0780036261.01.T01 MTR_4g075590 26.316 171 103 5 90 237 90 260 7.62e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036261.01.T02 AT5G37820 51.628 215 103 1 37 250 43 257 3.44e-73 226
MsG0780036261.01.T02 AT4G18910 48.430 223 107 1 35 249 50 272 3.97e-73 226
MsG0780036261.01.T02 AT5G37820 51.869 214 102 1 37 249 79 292 5.53e-73 226
MsG0780036261.01.T02 AT5G37810 49.065 214 108 1 37 249 43 256 1.43e-69 216
MsG0780036261.01.T02 AT4G19030 39.777 269 141 3 2 249 7 275 3.59e-68 213
MsG0780036261.01.T02 AT1G31885 42.460 252 135 2 33 274 39 290 1.85e-67 213
MsG0780036261.01.T02 AT1G80760 44.444 216 120 0 37 252 80 295 2.83e-67 211
MsG0780036261.01.T02 AT4G10380 44.240 217 121 0 37 253 78 294 2.76e-63 201
MsG0780036261.01.T02 AT1G31885 43.220 236 124 2 49 274 1 236 2.94e-63 200
MsG0780036261.01.T02 AT2G34390 42.254 213 114 2 35 239 46 257 2.24e-56 183
MsG0780036261.01.T02 AT2G34390 41.784 213 115 2 35 239 4 215 4.16e-56 181
MsG0780036261.01.T02 AT3G06100 38.164 207 127 1 37 242 46 252 1.16e-48 162
MsG0780036261.01.T02 AT3G06100 38.424 203 124 1 41 242 2 204 6.25e-48 159
MsG0780036261.01.T02 AT4G18910 45.665 173 86 1 35 199 50 222 2.42e-47 157
MsG0780036261.01.T02 AT4G19030 36.239 218 118 3 2 198 7 224 4.92e-44 149
MsG0780036261.01.T02 AT2G34390 38.728 173 97 2 35 199 46 217 2.31e-37 132
MsG0780036261.01.T02 AT4G19030 34.848 198 108 3 2 178 7 204 1.25e-36 130
MsG0780036261.01.T02 AT2G34390 37.419 155 88 2 35 181 46 199 1.85e-31 116
MsG0780036261.01.T02 AT3G26520 33.613 238 145 7 26 252 12 247 1.50e-27 107
MsG0780036261.01.T02 AT3G16240 33.624 229 132 6 37 250 19 242 2.14e-26 103
MsG0780036261.01.T02 AT5G47450 35.945 217 125 5 37 242 19 232 3.68e-26 103
MsG0780036261.01.T02 AT3G06100 37.405 131 81 1 113 242 41 171 5.14e-26 101
MsG0780036261.01.T02 AT1G17810 31.120 241 150 6 37 262 24 263 6.96e-26 103
MsG0780036261.01.T02 AT4G17340 35.648 216 127 4 37 242 19 232 4.86e-25 100
MsG0780036261.01.T02 AT2G25810 33.913 230 146 4 37 261 19 247 4.29e-24 97.8
MsG0780036261.01.T02 AT1G73190 29.752 242 152 6 37 260 24 265 5.41e-24 98.2
MsG0780036261.01.T02 AT2G36830 32.456 228 139 6 37 252 21 245 5.96e-21 89.7
MsG0780036261.01.T02 AT2G29870 41.860 86 50 0 151 236 20 105 4.95e-20 84.3
MsG0780036261.01.T02 AT1G31885 46.429 84 45 0 33 116 39 122 6.28e-20 84.0
MsG0780036261.01.T02 AT2G16850 30.453 243 149 8 35 259 34 274 1.37e-18 83.6
MsG0780036261.01.T02 AT4G01470 31.602 231 136 6 37 251 21 245 2.60e-18 82.4
MsG0780036261.01.T02 AT3G61430 29.870 231 138 7 35 245 50 276 1.89e-17 80.5
MsG0780036261.01.T02 AT3G61430 29.870 231 138 7 35 245 50 276 1.89e-17 80.5
MsG0780036261.01.T02 AT1G01620 28.821 229 131 8 35 239 50 270 4.27e-17 79.7
MsG0780036261.01.T02 AT4G35100 31.390 223 133 8 35 239 36 256 6.01e-17 79.0
MsG0780036261.01.T02 AT4G35100 31.390 223 133 8 35 239 36 256 6.01e-17 79.0
MsG0780036261.01.T02 AT2G45960 29.004 231 140 7 35 245 50 276 6.48e-17 79.0
MsG0780036261.01.T02 AT4G23400 29.339 242 138 9 35 251 51 284 7.39e-17 79.0
MsG0780036261.01.T02 AT4G00430 28.512 242 140 9 35 251 51 284 1.08e-16 78.6
MsG0780036261.01.T02 AT1G01620 31.156 199 115 7 71 251 17 211 1.46e-16 77.0
MsG0780036261.01.T02 AT3G54820 29.004 231 140 7 35 242 36 265 4.08e-16 77.0
MsG0780036261.01.T02 AT5G60660 27.660 235 140 6 37 245 39 269 9.58e-16 75.9
MsG0780036261.01.T02 AT3G53420 26.172 256 157 7 35 263 37 287 9.63e-16 75.9
MsG0780036261.01.T02 AT3G53420 26.172 256 157 7 35 263 37 287 9.63e-16 75.9
MsG0780036261.01.T02 AT2G37170 25.769 260 164 8 27 263 32 285 1.57e-15 75.1
MsG0780036261.01.T02 AT2G37170 25.769 260 164 8 27 263 75 328 2.43e-15 75.1
MsG0780036261.01.T02 AT2G37180 25.758 264 159 8 27 263 32 285 3.28e-15 74.3
MsG0780036261.01.T02 AT2G39010 28.458 253 138 9 20 242 26 265 3.74e-15 74.3
MsG0780036261.01.T02 AT3G47440 31.073 177 108 5 84 251 75 246 1.73e-13 68.9
MsG0780036261.01.T02 AT2G45960 28.643 199 121 6 35 216 50 244 8.97e-12 64.7
MsG0780036261.01.T02 AT2G45960 28.643 199 121 6 35 216 50 244 9.25e-12 64.3
MsG0780036261.01.T01 AT5G37820 51.628 215 103 1 37 250 43 257 3.44e-73 226
MsG0780036261.01.T01 AT4G18910 48.430 223 107 1 35 249 50 272 3.97e-73 226
MsG0780036261.01.T01 AT5G37820 51.869 214 102 1 37 249 79 292 5.53e-73 226
MsG0780036261.01.T01 AT5G37810 49.065 214 108 1 37 249 43 256 1.43e-69 216
MsG0780036261.01.T01 AT4G19030 39.777 269 141 3 2 249 7 275 3.59e-68 213
MsG0780036261.01.T01 AT1G31885 42.460 252 135 2 33 274 39 290 1.85e-67 213
MsG0780036261.01.T01 AT1G80760 44.444 216 120 0 37 252 80 295 2.83e-67 211
MsG0780036261.01.T01 AT4G10380 44.240 217 121 0 37 253 78 294 2.76e-63 201
MsG0780036261.01.T01 AT1G31885 43.220 236 124 2 49 274 1 236 2.94e-63 200
MsG0780036261.01.T01 AT2G34390 42.254 213 114 2 35 239 46 257 2.24e-56 183
MsG0780036261.01.T01 AT2G34390 41.784 213 115 2 35 239 4 215 4.16e-56 181
MsG0780036261.01.T01 AT3G06100 38.164 207 127 1 37 242 46 252 1.16e-48 162
MsG0780036261.01.T01 AT3G06100 38.424 203 124 1 41 242 2 204 6.25e-48 159
MsG0780036261.01.T01 AT4G18910 45.665 173 86 1 35 199 50 222 2.42e-47 157
MsG0780036261.01.T01 AT4G19030 36.239 218 118 3 2 198 7 224 4.92e-44 149
MsG0780036261.01.T01 AT2G34390 38.728 173 97 2 35 199 46 217 2.31e-37 132
MsG0780036261.01.T01 AT4G19030 34.848 198 108 3 2 178 7 204 1.25e-36 130
MsG0780036261.01.T01 AT2G34390 37.419 155 88 2 35 181 46 199 1.85e-31 116
MsG0780036261.01.T01 AT3G26520 33.613 238 145 7 26 252 12 247 1.50e-27 107
MsG0780036261.01.T01 AT3G16240 33.624 229 132 6 37 250 19 242 2.14e-26 103
MsG0780036261.01.T01 AT5G47450 35.945 217 125 5 37 242 19 232 3.68e-26 103
MsG0780036261.01.T01 AT3G06100 37.405 131 81 1 113 242 41 171 5.14e-26 101
MsG0780036261.01.T01 AT1G17810 31.120 241 150 6 37 262 24 263 6.96e-26 103
MsG0780036261.01.T01 AT4G17340 35.648 216 127 4 37 242 19 232 4.86e-25 100
MsG0780036261.01.T01 AT2G25810 33.913 230 146 4 37 261 19 247 4.29e-24 97.8
MsG0780036261.01.T01 AT1G73190 29.752 242 152 6 37 260 24 265 5.41e-24 98.2
MsG0780036261.01.T01 AT2G36830 32.456 228 139 6 37 252 21 245 5.96e-21 89.7
MsG0780036261.01.T01 AT2G29870 41.860 86 50 0 151 236 20 105 4.95e-20 84.3
MsG0780036261.01.T01 AT1G31885 46.429 84 45 0 33 116 39 122 6.28e-20 84.0
MsG0780036261.01.T01 AT2G16850 30.453 243 149 8 35 259 34 274 1.37e-18 83.6
MsG0780036261.01.T01 AT4G01470 31.602 231 136 6 37 251 21 245 2.60e-18 82.4
MsG0780036261.01.T01 AT3G61430 29.870 231 138 7 35 245 50 276 1.89e-17 80.5
MsG0780036261.01.T01 AT3G61430 29.870 231 138 7 35 245 50 276 1.89e-17 80.5
MsG0780036261.01.T01 AT1G01620 28.821 229 131 8 35 239 50 270 4.27e-17 79.7
MsG0780036261.01.T01 AT4G35100 31.390 223 133 8 35 239 36 256 6.01e-17 79.0
MsG0780036261.01.T01 AT4G35100 31.390 223 133 8 35 239 36 256 6.01e-17 79.0
MsG0780036261.01.T01 AT2G45960 29.004 231 140 7 35 245 50 276 6.48e-17 79.0
MsG0780036261.01.T01 AT4G23400 29.339 242 138 9 35 251 51 284 7.39e-17 79.0
MsG0780036261.01.T01 AT4G00430 28.512 242 140 9 35 251 51 284 1.08e-16 78.6
MsG0780036261.01.T01 AT1G01620 31.156 199 115 7 71 251 17 211 1.46e-16 77.0
MsG0780036261.01.T01 AT3G54820 29.004 231 140 7 35 242 36 265 4.08e-16 77.0
MsG0780036261.01.T01 AT5G60660 27.660 235 140 6 37 245 39 269 9.58e-16 75.9
MsG0780036261.01.T01 AT3G53420 26.172 256 157 7 35 263 37 287 9.63e-16 75.9
MsG0780036261.01.T01 AT3G53420 26.172 256 157 7 35 263 37 287 9.63e-16 75.9
MsG0780036261.01.T01 AT2G37170 25.769 260 164 8 27 263 32 285 1.57e-15 75.1
MsG0780036261.01.T01 AT2G37170 25.769 260 164 8 27 263 75 328 2.43e-15 75.1
MsG0780036261.01.T01 AT2G37180 25.758 264 159 8 27 263 32 285 3.28e-15 74.3
MsG0780036261.01.T01 AT2G39010 28.458 253 138 9 20 242 26 265 3.74e-15 74.3
MsG0780036261.01.T01 AT3G47440 31.073 177 108 5 84 251 75 246 1.73e-13 68.9
MsG0780036261.01.T01 AT2G45960 28.643 199 121 6 35 216 50 244 8.97e-12 64.7
MsG0780036261.01.T01 AT2G45960 28.643 199 121 6 35 216 50 244 9.25e-12 64.3

Find 17 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATCGTTGTTTATACCTTT+TGG 0.189673 7:+5544926 None:intergenic
GAGGATACATTGATTGCTTT+TGG 0.205177 7:+5544833 None:intergenic
CACAAGAGGAAGATTATAAA+AGG 0.237949 7:-5545045 MsG0780036261.01.T01:five_prime_UTR
ATAAGTTATATTACTCCAAA+AGG 0.431304 7:-5544941 MsG0780036261.01.T01:five_prime_UTR
TGTGATCTCTAGCTAGAGTT+AGG 0.446117 7:+5544970 None:intergenic
ATCAAGATCAACAAGCCGTT+TGG 0.458517 7:-5544890 MsG0780036261.01.T01:CDS
ATATGTTAACCGAATGTGGC+AGG 0.471225 7:+5545004 None:intergenic
GTATTGTTCCCTGCCACATT+CGG 0.480851 7:-5545013 MsG0780036261.01.T01:five_prime_UTR
AAGCAATCAATGTATCCTCT+TGG 0.516456 7:-5544829 MsG0780036261.01.T01:CDS
AATCATTGAGTAGGCACAAG+AGG 0.543469 7:-5545059 None:intergenic
ACAAGAGGAAGATTATAAAA+GGG 0.546207 7:-5545044 MsG0780036261.01.T01:five_prime_UTR
AGCTATATGTTAACCGAATG+TGG 0.556187 7:+5545000 None:intergenic
CATTTGTAAAAGTGACCAAA+CGG 0.563732 7:+5544875 None:intergenic
AAGGTATAAACAACGATGGA+GGG 0.581184 7:-5544922 MsG0780036261.01.T01:exon
AAAGGTATAAACAACGATGG+AGG 0.586172 7:-5544923 MsG0780036261.01.T01:exon
CCAAAAGGTATAAACAACGA+TGG 0.643598 7:-5544926 MsG0780036261.01.T01:exon
TATGTTAACCGAATGTGGCA+GGG 0.647011 7:+5545005 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATGATTTCTTAATATA+AGG - Chr7:5541020-5541039 MsG0780036261.01.T01:CDS 10.0%
!! ATATTAAATTTAATTGATGA+AGG + Chr7:5541271-5541290 None:intergenic 10.0%
!! ATCAATTAAATTTAATATAC+AGG - Chr7:5541273-5541292 MsG0780036261.01.T01:intron 10.0%
!! ATTTAATTAAATTGTTAAAG+TGG + Chr7:5541786-5541805 None:intergenic 10.0%
!!! AAATTCTAATTTTTACTTTA+TGG - Chr7:5541541-5541560 MsG0780036261.01.T01:CDS 10.0%
!!! AATCAATTTTTAATATTAAG+AGG + Chr7:5544414-5544433 None:intergenic 10.0%
!!! ACTTATTATTAATAATTTGT+TGG + Chr7:5544475-5544494 None:intergenic 10.0%
!!! ATAATTTTTTAGTGTAAATT+GGG + Chr7:5541760-5541779 None:intergenic 10.0%
!!! ATCAATTTTTAATATTAAGA+GGG + Chr7:5544413-5544432 None:intergenic 10.0%
!!! ATTGATTGAATTTTTTATTT+TGG - Chr7:5544427-5544446 MsG0780036261.01.T01:intron 10.0%
!!! TATAATTTTTTAGTGTAAAT+TGG + Chr7:5541761-5541780 None:intergenic 10.0%
!! AAAAAGAAAAAGAAAAAAGA+GGG - Chr7:5541954-5541973 MsG0780036261.01.T01:intron 15.0%
!!! ATATTAGTAATTACCTTTTT+TGG + Chr7:5540877-5540896 None:intergenic 15.0%
!!! TAAACATTAAGAGTATTTTT+TGG - Chr7:5541909-5541928 MsG0780036261.01.T01:intron 15.0%
!!! TATCATTTTTAGTAAAAAAG+TGG + Chr7:5541124-5541143 None:intergenic 15.0%
!!! TATTAGTAATTACCTTTTTT+GGG + Chr7:5540876-5540895 None:intergenic 15.0%
!!! TTATTTCAATTTCTCTTTTT+TGG + Chr7:5541867-5541886 None:intergenic 15.0%
!! AAAATATACTCTCAAGAATT+GGG - Chr7:5543468-5543487 MsG0780036261.01.T01:intron 20.0%
!! AATTAATTGTGAAGAAAAGT+AGG + Chr7:5542481-5542500 None:intergenic 20.0%
!! ACATATTTATTGGTATTTGT+TGG - Chr7:5541316-5541335 MsG0780036261.01.T01:intron 20.0%
!! ATAAGTTATATTACTCCAAA+AGG - Chr7:5540735-5540754 MsG0780036261.01.T01:three_prime_UTR 20.0%
!! ATATGTATGTATCAAACTTA+AGG - Chr7:5544979-5544998 MsG0780036261.01.T01:intron 20.0%
!! ATGTGTTATATAGTTAATTC+TGG + Chr7:5544241-5544260 None:intergenic 20.0%
!! ATTAACCATGTATATTTCAA+TGG - Chr7:5545002-5545021 MsG0780036261.01.T01:five_prime_UTR 20.0%
!! ATTATTAAGTCTGGATTTAT+TGG - Chr7:5542992-5543011 MsG0780036261.01.T01:intron 20.0%
!! ATTTAATATACAGGTATTTG+CGG - Chr7:5541282-5541301 MsG0780036261.01.T01:intron 20.0%
!! CAAAAAGAAAAAGAAAAAAG+AGG - Chr7:5541953-5541972 MsG0780036261.01.T01:intron 20.0%
!! CAATCAATAACAACAAAAAA+TGG + Chr7:5541242-5541261 None:intergenic 20.0%
!! CATATTAGAGATACTTTATA+TGG + Chr7:5542148-5542167 None:intergenic 20.0%
!! CATATTTATTGGTATTTGTT+GGG - Chr7:5541317-5541336 MsG0780036261.01.T01:intron 20.0%
!! TATATCCATTGAAATATACA+TGG + Chr7:5545010-5545029 None:intergenic 20.0%
!! TTATCTATGCATTATTCAAT+AGG + Chr7:5540947-5540966 None:intergenic 20.0%
!! TTTCAAGATAAAAAACAACT+AGG + Chr7:5543546-5543565 None:intergenic 20.0%
!!! AATCTTTTCTAACTTAATCA+AGG - Chr7:5541611-5541630 MsG0780036261.01.T01:CDS 20.0%
!!! ATAAAGTATCTCTAATATGA+AGG - Chr7:5542149-5542168 MsG0780036261.01.T01:intron 20.0%
!!! ATAATGATTTTATTTGCAGA+CGG - Chr7:5544271-5544290 MsG0780036261.01.T01:CDS 20.0%
!!! ATCTTTTCTAACTTAATCAA+GGG - Chr7:5541612-5541631 MsG0780036261.01.T01:CDS 20.0%
!!! ATTGAACATTCTAAGAAAAT+TGG - Chr7:5542352-5542371 MsG0780036261.01.T01:intron 20.0%
!!! CCAATAACTAATTTTAAATG+TGG + Chr7:5543496-5543515 None:intergenic 20.0%
!!! CCACATTTAAAATTAGTTAT+TGG - Chr7:5543493-5543512 MsG0780036261.01.T01:intron 20.0%
!!! GTTATAAACCTTTTAACTAT+AGG + Chr7:5541161-5541180 None:intergenic 20.0%
!!! TACTTTTCTTCACAATTAAT+TGG - Chr7:5542480-5542499 MsG0780036261.01.T01:intron 20.0%
!!! TAGAAAACTTCCAAAAATTT+TGG + Chr7:5543174-5543193 None:intergenic 20.0%
!!! TCTTTTTAAAAAAATGTGAC+TGG + Chr7:5544371-5544390 None:intergenic 20.0%
!!! TTGTTTGTTTTTAAAACGAT+TGG - Chr7:5543516-5543535 MsG0780036261.01.T01:intron 20.0%
!!! TTTTGTTGTTATTGATTGAT+TGG - Chr7:5541244-5541263 MsG0780036261.01.T01:intron 20.0%
!!! TTTTTATAATCCGAATTGAA+CGG + Chr7:5541003-5541022 None:intergenic 20.0%
! AACAATCTCATCATTGAATT+TGG + Chr7:5543145-5543164 None:intergenic 25.0%
! ACAAGAGGAAGATTATAAAA+GGG - Chr7:5540632-5540651 MsG0780036261.01.T01:three_prime_UTR 25.0%
! ACTAAATATATGCACTGAAT+TGG + Chr7:5544953-5544972 None:intergenic 25.0%
! ACTGTTATGATTTATGCTAT+TGG - Chr7:5541421-5541440 MsG0780036261.01.T01:intron 25.0%
! AGAGATACTTTATATGGAAA+TGG + Chr7:5542142-5542161 None:intergenic 25.0%
! AGATGGAAAATTATTAAGTC+TGG - Chr7:5542983-5543002 MsG0780036261.01.T01:intron 25.0%
! ATGAAATGAAAGAAGATTGT+TGG + Chr7:5542524-5542543 None:intergenic 25.0%
! ATGACATTCTTAATATTCGT+TGG + Chr7:5542946-5542965 None:intergenic 25.0%
! CAAAATATACTCTCAAGAAT+TGG - Chr7:5543467-5543486 MsG0780036261.01.T01:intron 25.0%
! CATCTCTTTCACATTTATTA+TGG - Chr7:5542857-5542876 MsG0780036261.01.T01:intron 25.0%
! CCTTCTCATTAAAATTCTTA+TGG - Chr7:5543102-5543121 MsG0780036261.01.T01:intron 25.0%
! CTATCTATTATGATCCTATT+CGG - Chr7:5543191-5543210 MsG0780036261.01.T01:intron 25.0%
! GAAAACAAAGTCTCAAAATT+GGG - Chr7:5541370-5541389 MsG0780036261.01.T01:CDS 25.0%
! GAAATGTGTTTGCATTTAAT+TGG - Chr7:5542680-5542699 MsG0780036261.01.T01:intron 25.0%
! GAATAATGCATAGATAAAAC+TGG - Chr7:5540950-5540969 MsG0780036261.01.T01:CDS 25.0%
! TATTTGTGAAAGTGATTGTT+TGG + Chr7:5542236-5542255 None:intergenic 25.0%
! TGAAAACAAAGTCTCAAAAT+TGG - Chr7:5541369-5541388 MsG0780036261.01.T01:CDS 25.0%
! TGAAATGAAATGAAATGTCT+TGG - Chr7:5544915-5544934 MsG0780036261.01.T01:exon 25.0%
! TTAATTAGCATCAAATAACC+AGG + Chr7:5544554-5544573 None:intergenic 25.0%
! TTATGAATGCTGTAAAATTG+AGG - Chr7:5541192-5541211 MsG0780036261.01.T01:intron 25.0%
! TTCGAAAACTATCTTCTAAA+CGG - Chr7:5543604-5543623 MsG0780036261.01.T01:intron 25.0%
! TTTGTGTTTCAATGAAAAGT+TGG - Chr7:5545034-5545053 MsG0780036261.01.T01:five_prime_UTR 25.0%
!! AAATATGTGTGCAGATTTTA+TGG + Chr7:5542086-5542105 None:intergenic 25.0%
!! ACTCACAACAATTTATTTCT+TGG + Chr7:5542632-5542651 None:intergenic 25.0%
!! AGCATTTTTCTATGTTGAAA+AGG + Chr7:5543694-5543713 None:intergenic 25.0%
!! ATATTAAGAGGGATCTTTTT+AGG + Chr7:5544402-5544421 None:intergenic 25.0%
!! ATGTAAGAGTACATATTGAA+TGG + Chr7:5541069-5541088 None:intergenic 25.0%
!! CAATTTTACAGCATTCATAA+AGG + Chr7:5541192-5541211 None:intergenic 25.0%
!! CTTGATTTTTGTAGTCAAAA+AGG + Chr7:5542271-5542290 None:intergenic 25.0%
!! TAAAATTCTTATGGCTTTTG+AGG - Chr7:5543111-5543130 MsG0780036261.01.T01:intron 25.0%
!! TACAAAAATCAAGACCTTTT+TGG - Chr7:5542278-5542297 MsG0780036261.01.T01:intron 25.0%
!! TATTAAGAGGGATCTTTTTA+GGG + Chr7:5544401-5544420 None:intergenic 25.0%
!! TTTGGTAGTTTCTTTCTTTA+TGG + Chr7:5543395-5543414 None:intergenic 25.0%
!!! AGGTTTCTACATTTTAGTTT+TGG + Chr7:5543439-5543458 None:intergenic 25.0%
!!! ATTCACATTAGAGGTATTTT+CGG + Chr7:5543755-5543774 None:intergenic 25.0%
!!! ATTCTTGAGAGTATATTTTG+TGG + Chr7:5543467-5543486 None:intergenic 25.0%
!!! CCATAAGAATTTTAATGAGA+AGG + Chr7:5543105-5543124 None:intergenic 25.0%
!!! GAGAATAGTACATTTTAGTT+TGG - Chr7:5544868-5544887 MsG0780036261.01.T01:CDS 25.0%
!!! GCATTTATGTTTTAAAGAGA+TGG - Chr7:5542966-5542985 MsG0780036261.01.T01:intron 25.0%
!!! TAATGATTTTATTTGCAGAC+GGG - Chr7:5544272-5544291 MsG0780036261.01.T01:CDS 25.0%
!!! TCTACATTTTAGTTTTGGAA+GGG + Chr7:5543434-5543453 None:intergenic 25.0%
!!! TTCTACATTTTAGTTTTGGA+AGG + Chr7:5543435-5543454 None:intergenic 25.0%
!!! TTTGATAATTTTCACAACAC+AGG + Chr7:5544522-5544541 None:intergenic 25.0%
AAAGAGTTTACTGTCCATTT+AGG - Chr7:5541684-5541703 MsG0780036261.01.T01:CDS 30.0%
AAATGCAAACACATTTCTGT+GGG + Chr7:5542677-5542696 None:intergenic 30.0%
AAATGTTTGTTCCTACGAAT+TGG + Chr7:5543081-5543100 None:intergenic 30.0%
AAGAAGATTGTTGGATAGAA+AGG + Chr7:5542515-5542534 None:intergenic 30.0%
AAGATACACAATGAAATGAG+TGG - Chr7:5544802-5544821 MsG0780036261.01.T01:intron 30.0%
ACTAATCTTTCAATCCGAAT+AGG + Chr7:5543208-5543227 None:intergenic 30.0%
AGATACACAATGAAATGAGT+GGG - Chr7:5544803-5544822 MsG0780036261.01.T01:intron 30.0%
CACAAGAGGAAGATTATAAA+AGG - Chr7:5540631-5540650 MsG0780036261.01.T01:three_prime_UTR 30.0%
CATTATTCAATAGGTTCGAA+CGG + Chr7:5540938-5540957 None:intergenic 30.0%
CATTTGTAAAAGTGACCAAA+CGG + Chr7:5540804-5540823 None:intergenic 30.0%
GGTCACAATTTCTATGATTA+GGG + Chr7:5544117-5544136 None:intergenic 30.0%
GGTTATAGGGACATATTTAT+TGG - Chr7:5541306-5541325 MsG0780036261.01.T01:intron 30.0%
GTGTTTGCATTTAATTGGAT+GGG - Chr7:5542685-5542704 MsG0780036261.01.T01:intron 30.0%
TAAATGCAAACACATTTCTG+TGG + Chr7:5542678-5542697 None:intergenic 30.0%
TCATTTCATTTCATATGCCT+TGG + Chr7:5544908-5544927 None:intergenic 30.0%
TCTGGATTTATTGGAAATCA+TGG - Chr7:5543001-5543020 MsG0780036261.01.T01:intron 30.0%
TGGAAATGGTAATACAACAT+TGG + Chr7:5542128-5542147 None:intergenic 30.0%
TGGTCACAATTTCTATGATT+AGG + Chr7:5544118-5544137 None:intergenic 30.0%
TGTGTTTGCATTTAATTGGA+TGG - Chr7:5542684-5542703 MsG0780036261.01.T01:intron 30.0%
TTCATCCTACAAAGGAATTT+GGG - Chr7:5544666-5544685 MsG0780036261.01.T01:intron 30.0%
TTGATATGGACTTAATCCAT+TGG + Chr7:5542599-5542618 None:intergenic 30.0%
TTTCCAAGGAAAATGCTTAA+CGG + Chr7:5541497-5541516 None:intergenic 30.0%
! ATTAAGAGGGATCTTTTTAG+GGG + Chr7:5544400-5544419 None:intergenic 30.0%
! CATAGCATTTAGAGTTTCTT+TGG - Chr7:5542321-5542340 MsG0780036261.01.T01:intron 30.0%
! GAGTATATTTTGTGGTTAGT+AGG + Chr7:5543459-5543478 None:intergenic 30.0%
! GTATTTTCGGAAGTTTAGTT+GGG - Chr7:5543893-5543912 MsG0780036261.01.T01:intron 30.0%
! TAAACGGTTTGCACATTTTT+GGG - Chr7:5543620-5543639 MsG0780036261.01.T01:intron 30.0%
! TCTTGTGCTCTAAATAATGT+AGG + Chr7:5543326-5543345 None:intergenic 30.0%
! TGTTGTAGCACCAAAATTTT+TGG - Chr7:5543161-5543180 MsG0780036261.01.T01:intron 30.0%
!! AGGATACATTGATTGCTTTT+GGG + Chr7:5540845-5540864 None:intergenic 30.0%
!! TAGTTTTACAGCTTTTGAGT+CGG + Chr7:5544177-5544196 None:intergenic 30.0%
!! TGAGTTCAAATCTAGTCTTA+GGG - Chr7:5541637-5541656 MsG0780036261.01.T01:CDS 30.0%
!!! GTACATTTTAGTTTGGAGTT+TGG - Chr7:5544875-5544894 MsG0780036261.01.T01:CDS 30.0%
AAAACTTTGCATCACATGCA+AGG + Chr7:5542744-5542763 None:intergenic 35.0%
AAGCAATCAATGTATCCTCT+TGG - Chr7:5540847-5540866 MsG0780036261.01.T01:intron 35.0%
AAGGTATAAACAACGATGGA+GGG - Chr7:5540754-5540773 MsG0780036261.01.T01:three_prime_UTR 35.0%
ACAGGTTTGTCTCTTTACTT+TGG - Chr7:5541516-5541535 MsG0780036261.01.T01:CDS 35.0%
ACTATTCTCACACTTAGCAT+TGG + Chr7:5544857-5544876 None:intergenic 35.0%
ACTGATTGAACCGTTCAATT+CGG - Chr7:5540990-5541009 MsG0780036261.01.T01:CDS 35.0%
ACTTTGATTCTCGTATTTCC+TGG + Chr7:5543354-5543373 None:intergenic 35.0%
AGCTATATGTTAACCGAATG+TGG + Chr7:5540679-5540698 None:intergenic 35.0%
AGTTGAGCTGCAATGTAAAA+TGG + Chr7:5543999-5544018 None:intergenic 35.0%
ATAGACCCAAATTCCTTTGT+AGG + Chr7:5544674-5544693 None:intergenic 35.0%
ATGAGAAATTCCATGTCAAG+CGG - Chr7:5542013-5542032 MsG0780036261.01.T01:intron 35.0%
ATTATCAAAAGAACCAAGCC+TGG - Chr7:5544533-5544552 MsG0780036261.01.T01:intron 35.0%
CAAAGGAATTTGGGTCTATA+TGG - Chr7:5544675-5544694 MsG0780036261.01.T01:intron 35.0%
CAAAGTACACAAGTTAACAC+AGG - Chr7:5543368-5543387 MsG0780036261.01.T01:intron 35.0%
CAACATGAGTCAATTTCCAA+TGG - Chr7:5542580-5542599 MsG0780036261.01.T01:intron 35.0%
CACATGCAAGGACTTATATA+GGG + Chr7:5542732-5542751 None:intergenic 35.0%
CATGTGTTTGTGAAAATGGA+TGG - Chr7:5543025-5543044 MsG0780036261.01.T01:intron 35.0%
CGTGACTTAATTCACATTAG+AGG + Chr7:5543764-5543783 None:intergenic 35.0%
CTTCATCCTACAAAGGAATT+TGG - Chr7:5544665-5544684 MsG0780036261.01.T01:intron 35.0%
CTTGTATACAGACCAATATC+AGG - Chr7:5544598-5544617 MsG0780036261.01.T01:intron 35.0%
GAGTTACATGCTATCCAAAA+AGG + Chr7:5542295-5542314 None:intergenic 35.0%
GATTACGACCATCAATAATC+AGG - Chr7:5542200-5542219 MsG0780036261.01.T01:intron 35.0%
GGTAGTGTTACAAAGTAATG+AGG - Chr7:5541930-5541949 MsG0780036261.01.T01:intron 35.0%
GTCAACTTCAAATATCACTC+TGG - Chr7:5542650-5542669 MsG0780036261.01.T01:intron 35.0%
GTTGAGCTGCAATGTAAAAT+GGG + Chr7:5543998-5544017 None:intergenic 35.0%
TAATATACAGGTATTTGCGG+AGG - Chr7:5541285-5541304 MsG0780036261.01.T01:intron 35.0%
TATACAGACCAATATCAGGT+GGG - Chr7:5544602-5544621 MsG0780036261.01.T01:intron 35.0%
TATATGGTTGGACCAATTAC+AGG - Chr7:5544691-5544710 MsG0780036261.01.T01:intron 35.0%
TCACATGCAAGGACTTATAT+AGG + Chr7:5542733-5542752 None:intergenic 35.0%
TTGGCTGAACAAGTTTGATA+TGG + Chr7:5542613-5542632 None:intergenic 35.0%
TTGTGTATCTTGACTGAAAG+TGG + Chr7:5544793-5544812 None:intergenic 35.0%
! AAAGGTATAAACAACGATGG+AGG - Chr7:5540753-5540772 MsG0780036261.01.T01:three_prime_UTR 35.0%
! ATAACAAGTTGTGGTTTTCG+TGG - Chr7:5543051-5543070 MsG0780036261.01.T01:intron 35.0%
! ATTGCTACTTCATCCTACAA+AGG - Chr7:5544658-5544677 MsG0780036261.01.T01:intron 35.0%
! CATCCATTTTCACAAACACA+TGG + Chr7:5543027-5543046 None:intergenic 35.0%
! CATTGGAAATTGACTCATGT+TGG + Chr7:5542582-5542601 None:intergenic 35.0%
! CCAAAAGGTATAAACAACGA+TGG - Chr7:5540750-5540769 MsG0780036261.01.T01:three_prime_UTR 35.0%
! CCATCGTTGTTTATACCTTT+TGG + Chr7:5540753-5540772 None:intergenic 35.0%
! CTAAACGGTTTGCACATTTT+TGG - Chr7:5543619-5543638 MsG0780036261.01.T01:intron 35.0%
! GGTATTTTCGGAAGTTTAGT+TGG - Chr7:5543892-5543911 MsG0780036261.01.T01:intron 35.0%
! GTGAGTTCAAATCTAGTCTT+AGG - Chr7:5541636-5541655 MsG0780036261.01.T01:CDS 35.0%
! GTGCTCTAAATAATGTAGGT+TGG + Chr7:5543322-5543341 None:intergenic 35.0%
! TAAGCATTTTCCTTGGAAAC+AGG - Chr7:5541498-5541517 MsG0780036261.01.T01:intron 35.0%
! TATTGGTATTTGTTGGGAGT+GGG - Chr7:5541323-5541342 MsG0780036261.01.T01:intron 35.0%
! TTATTGGTATTTGTTGGGAG+TGG - Chr7:5541322-5541341 MsG0780036261.01.T01:intron 35.0%
! TTGAGCTATAATTTGCGACA+TGG - Chr7:5544827-5544846 MsG0780036261.01.T01:CDS 35.0%
!! CGAAAACCACAACTTGTTAT+CGG + Chr7:5543051-5543070 None:intergenic 35.0%
!! CTTTTAACTATAGGCGTAAG+CGG + Chr7:5541152-5541171 None:intergenic 35.0%
!! GAGGATACATTGATTGCTTT+TGG + Chr7:5540846-5540865 None:intergenic 35.0%
!!! GAGCAACTGTCACTTTTTTT+TGG - Chr7:5543650-5543669 MsG0780036261.01.T01:intron 35.0%
!!! TAGAGGTATTTTCGGAAGTT+TGG + Chr7:5543747-5543766 None:intergenic 35.0%
AAAAGGTCCAAATCTACACC+TGG + Chr7:5543677-5543696 None:intergenic 40.0%
AACATTGGTGCATGCTCTTA+GGG + Chr7:5542113-5542132 None:intergenic 40.0%
AAGAGACAAACCTGTTTCCA+AGG + Chr7:5541511-5541530 None:intergenic 40.0%
AATGTAAAATGGGACCTGCA+AGG + Chr7:5543988-5544007 None:intergenic 40.0%
AGGTATTTGCGGAGGTTATA+GGG - Chr7:5541293-5541312 MsG0780036261.01.T01:intron 40.0%
ATATGTTAACCGAATGTGGC+AGG + Chr7:5540675-5540694 None:intergenic 40.0%
ATCAAGATCAACAAGCCGTT+TGG - Chr7:5540786-5540805 MsG0780036261.01.T01:three_prime_UTR 40.0%
ATGAATCCAGCAAGGTCTTT+AGG - Chr7:5544628-5544647 MsG0780036261.01.T01:intron 40.0%
CGCTTACGCCTATAGTTAAA+AGG - Chr7:5541150-5541169 MsG0780036261.01.T01:intron 40.0%
CTCATTTCGAGAGATAAGCT+TGG + Chr7:5541998-5542017 None:intergenic 40.0%
GAGAGTGAGCAAATCTTGTT+GGG + Chr7:5543722-5543741 None:intergenic 40.0%
GCAGTTGACCTGATTATTGA+TGG + Chr7:5542211-5542230 None:intergenic 40.0%
GCTTGAATGTTTGATCCAGA+AGG + Chr7:5544095-5544114 None:intergenic 40.0%
GGAAGGGTTGTTGTGTATTT+GGG + Chr7:5543418-5543437 None:intergenic 40.0%
GGAATTTGGGTCTATATGGT+TGG - Chr7:5544679-5544698 MsG0780036261.01.T01:intron 40.0%
GTATACAGACCAATATCAGG+TGG - Chr7:5544601-5544620 MsG0780036261.01.T01:intron 40.0%
GTATCTCATCTAAGCGTTCT+TGG + Chr7:5541588-5541607 None:intergenic 40.0%
TAGCATCAAATAACCAGGCT+TGG + Chr7:5544549-5544568 None:intergenic 40.0%
TAGGATGAAGTAGCAATTGC+AGG + Chr7:5544655-5544674 None:intergenic 40.0%
TATGCTATTGGACACATCTC+TGG - Chr7:5541433-5541452 MsG0780036261.01.T01:intron 40.0%
TATGTTAACCGAATGTGGCA+GGG + Chr7:5540674-5540693 None:intergenic 40.0%
TCTAAGCGTTCTTGGATAAG+TGG + Chr7:5541580-5541599 None:intergenic 40.0%
TGAGAGTGAGCAAATCTTGT+TGG + Chr7:5543723-5543742 None:intergenic 40.0%
TGCATTATTTCATGCCAGTG+AGG + Chr7:5542778-5542797 None:intergenic 40.0%
TGGAAGGGTTGTTGTGTATT+TGG + Chr7:5543419-5543438 None:intergenic 40.0%
TGGCCATGTGTTTGTGAAAA+TGG - Chr7:5543021-5543040 MsG0780036261.01.T01:intron 40.0%
TGTGATCTCTAGCTAGAGTT+AGG + Chr7:5540709-5540728 None:intergenic 40.0%
TTTGAACCTCAAATCCTCAC+TGG - Chr7:5542761-5542780 MsG0780036261.01.T01:intron 40.0%
! ATTGGTATTTGTTGGGAGTG+GGG - Chr7:5541324-5541343 MsG0780036261.01.T01:intron 40.0%
! CCAATTACAGGTGCACTTTT+AGG - Chr7:5544703-5544722 MsG0780036261.01.T01:intron 40.0%
! CCTAAAAGTGCACCTGTAAT+TGG + Chr7:5544706-5544725 None:intergenic 40.0%
! GGTTGTTGTGTATTTGGGTT+TGG + Chr7:5543413-5543432 None:intergenic 40.0%
! TTTTGGACCAGGTGTAGATT+TGG - Chr7:5543667-5543686 MsG0780036261.01.T01:intron 40.0%
!! TTTTACAGCTTTTGAGTCGG+TGG + Chr7:5544174-5544193 None:intergenic 40.0%
!!! AAGTCACGCAAGGGTATTTT+CGG - Chr7:5543880-5543899 MsG0780036261.01.T01:intron 40.0%
!!! CTGTCACTTTTTTTTGGACC+AGG - Chr7:5543656-5543675 MsG0780036261.01.T01:intron 40.0%
AAATTGGGAGCTTCACTTGC+AGG - Chr7:5541385-5541404 MsG0780036261.01.T01:CDS 45.0%
AATTGTGACCACCTTCACCA+TGG - Chr7:5544127-5544146 MsG0780036261.01.T01:intron 45.0%
ACGTGAGTTAAGTCACGCAA+GGG - Chr7:5543871-5543890 MsG0780036261.01.T01:intron 45.0%
AGAAATTCCATGTCAAGCGG+AGG - Chr7:5542016-5542035 MsG0780036261.01.T01:intron 45.0%
AGACCACAATCTTTCCTTGC+AGG - Chr7:5543971-5543990 MsG0780036261.01.T01:intron 45.0%
CAACATTGGTGCATGCTCTT+AGG + Chr7:5542114-5542133 None:intergenic 45.0%
CAGGTATTTGCGGAGGTTAT+AGG - Chr7:5541292-5541311 MsG0780036261.01.T01:intron 45.0%
CCAAGGAAAATGCTTAACGG+TGG + Chr7:5541494-5541513 None:intergenic 45.0%
GAAATTCCATGTCAAGCGGA+GGG - Chr7:5542017-5542036 MsG0780036261.01.T01:intron 45.0%
GTATTGTTCCCTGCCACATT+CGG - Chr7:5540663-5540682 MsG0780036261.01.T01:three_prime_UTR 45.0%
TACATTGCAGCTCAACTCAC+AGG - Chr7:5544002-5544021 MsG0780036261.01.T01:intron 45.0%
TACGTGAGTTAAGTCACGCA+AGG - Chr7:5543870-5543889 MsG0780036261.01.T01:intron 45.0%
TAGAGCCATCAAAGCAGCTA+GGG - Chr7:5544060-5544079 MsG0780036261.01.T01:intron 45.0%
TCCTCTTGGCTTCCCAAAAA+AGG - Chr7:5540861-5540880 MsG0780036261.01.T01:CDS 45.0%
TGGAGTTTGGACACTATCCA+AGG - Chr7:5544888-5544907 MsG0780036261.01.T01:CDS 45.0%
TTAGAGCACAAGATGTGTCC+AGG - Chr7:5543333-5543352 MsG0780036261.01.T01:intron 45.0%
TTAGAGCCATCAAAGCAGCT+AGG - Chr7:5544059-5544078 MsG0780036261.01.T01:intron 45.0%
TTAGGTCTCACAAGACTCGA+GGG - Chr7:5541702-5541721 MsG0780036261.01.T01:intron 45.0%
TTCATGCCAGTGAGGATTTG+AGG + Chr7:5542770-5542789 None:intergenic 45.0%
TTCGTGGATAGCCAATTCGT+AGG - Chr7:5543067-5543086 MsG0780036261.01.T01:intron 45.0%
TTGCGTGACTTAACTCACGT+AGG + Chr7:5543871-5543890 None:intergenic 45.0%
TTTAGGTCTCACAAGACTCG+AGG - Chr7:5541701-5541720 MsG0780036261.01.T01:intron 45.0%
! AGCATAGCAAGCATTGTTGC+TGG - Chr7:5544329-5544348 MsG0780036261.01.T01:CDS 45.0%
! CCACCGTTAAGCATTTTCCT+TGG - Chr7:5541491-5541510 MsG0780036261.01.T01:intron 45.0%
! CGAGTCTTGTGAGACCTAAA+TGG + Chr7:5541701-5541720 None:intergenic 45.0%
! GCATAGCAAGCATTGTTGCT+GGG - Chr7:5544330-5544349 MsG0780036261.01.T01:CDS 45.0%
! GGAAATTGACTCATGTTGGC+TGG + Chr7:5542578-5542597 None:intergenic 45.0%
! TGGGAGCGAGCAATTTTTGA+TGG - Chr7:5543912-5543931 MsG0780036261.01.T01:intron 45.0%
!!! ACCTTTTTTGGGAAGCCAAG+AGG + Chr7:5540865-5540884 None:intergenic 45.0%
!!! AAATTATTTAAAATAATTTG+TGG + Chr7:5542455-5542474 None:intergenic 5.0%
AGAGCCATCAAAGCAGCTAG+GGG - Chr7:5544061-5544080 MsG0780036261.01.T01:intron 50.0%
AGCGCGAGTTAATTCACGCT+GGG + Chr7:5543838-5543857 None:intergenic 50.0%
AGCGTGAATTAACTCGCGCT+GGG - Chr7:5543838-5543857 MsG0780036261.01.T01:intron 50.0%
AGTTTACACAGTTGCGCGCA+CGG - Chr7:5541728-5541747 MsG0780036261.01.T01:intron 50.0%
ATGCAATGTACTCTGCTCGC+TGG + Chr7:5542048-5542067 None:intergenic 50.0%
CTCTGGTGCACACATGAATC+CGG - Chr7:5541450-5541469 MsG0780036261.01.T01:intron 50.0%
CTTAACGGTGGCAAAAGCCA+AGG + Chr7:5541482-5541501 None:intergenic 50.0%
GATGAACACCATGGTGAAGG+TGG + Chr7:5544138-5544157 None:intergenic 50.0%
GCAAAAGCCAAGGAAACAGC+CGG + Chr7:5541472-5541491 None:intergenic 50.0%
GGACCTGCAAGGAAAGATTG+TGG + Chr7:5543977-5543996 None:intergenic 50.0%
GGAGATGAACACCATGGTGA+AGG + Chr7:5544141-5544160 None:intergenic 50.0%
GGATGGCCGATAACAAGTTG+TGG - Chr7:5543042-5543061 MsG0780036261.01.T01:intron 50.0%
! CATGAATCCGGCTGTTTCCT+TGG - Chr7:5541462-5541481 MsG0780036261.01.T01:intron 50.0%
!! CAGGTGCACTTTTAGGTGCA+TGG - Chr7:5544710-5544729 MsG0780036261.01.T01:intron 50.0%
!! GAACTTGCTGGAGTAGCAGT+AGG - Chr7:5544296-5544315 MsG0780036261.01.T01:CDS 50.0%
CAGCGCGAGTTAATTCACGC+TGG + Chr7:5543839-5543858 None:intergenic 55.0%
CAGCGTGAATTAACTCGCGC+TGG - Chr7:5543837-5543856 MsG0780036261.01.T01:intron 55.0%
CTAGGGGGAACATCACCTTC+TGG - Chr7:5544077-5544096 MsG0780036261.01.T01:intron 55.0%
GAGCCATCAAAGCAGCTAGG+GGG - Chr7:5544062-5544081 MsG0780036261.01.T01:intron 55.0%
GCAGGACCTAAAGACCTTGC+TGG + Chr7:5544637-5544656 None:intergenic 55.0%
GCGCGAGTTAATTCACGCTG+GGG + Chr7:5543837-5543856 None:intergenic 55.0%
GGCAGTGGAGATGAACACCA+TGG + Chr7:5544147-5544166 None:intergenic 55.0%
TTGCAGACGGGAGAACTTGC+TGG - Chr7:5544284-5544303 MsG0780036261.01.T01:CDS 55.0%
TTGGGAGCTTCACTTGCAGG+TGG - Chr7:5541388-5541407 MsG0780036261.01.T01:CDS 55.0%
! GTTCCCCCTAGCTGCTTTGA+TGG + Chr7:5544068-5544087 None:intergenic 55.0%
!! AGCTTTTGAGTCGGTGGCGA+CGG + Chr7:5544168-5544187 None:intergenic 55.0%
GAACTGCCCTCCGCTTGACA+TGG + Chr7:5542026-5542045 None:intergenic 60.0%
TTACACAGTTGCGCGCACGG+AGG - Chr7:5541731-5541750 MsG0780036261.01.T01:intron 60.0%
TGAGTCGGTGGCGACGGCAG+TGG + Chr7:5544162-5544181 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 5540627 5545071 5540627 ID=MsG0780036261.01;Name=MsG0780036261.01
Chr7 mRNA 5540627 5545064 5540627 ID=MsG0780036261.01.T01;Parent=MsG0780036261.01;Name=MsG0780036261.01.T01;_AED=0.37;_eAED=0.37;_QI=115|1|1|1|0.6|0.66|6|234|274
Chr7 exon 5544816 5544981 5544816 ID=MsG0780036261.01.T01:exon:2966;Parent=MsG0780036261.01.T01
Chr7 exon 5545002 5545064 5545002 ID=MsG0780036261.01.T01:exon:2965;Parent=MsG0780036261.01.T01
Chr7 five_prime_UTR 5545002 5545064 5545002 ID=MsG0780036261.01.T01:five_prime_utr;Parent=MsG0780036261.01.T01
Chr7 five_prime_UTR 5544930 5544981 5544930 ID=MsG0780036261.01.T01:five_prime_utr;Parent=MsG0780036261.01.T01
Chr7 CDS 5544816 5544929 5544816 ID=MsG0780036261.01.T01:cds;Parent=MsG0780036261.01.T01
Chr7 CDS 5544179 5544403 5544179 ID=MsG0780036261.01.T01:cds;Parent=MsG0780036261.01.T01
Chr7 CDS 5541511 5541705 5541511 ID=MsG0780036261.01.T01:cds;Parent=MsG0780036261.01.T01
Chr7 CDS 5541347 5541408 5541347 ID=MsG0780036261.01.T01:cds;Parent=MsG0780036261.01.T01
Chr7 CDS 5540861 5541089 5540861 ID=MsG0780036261.01.T01:cds;Parent=MsG0780036261.01.T01
Chr7 three_prime_UTR 5540627 5540860 5540627 ID=MsG0780036261.01.T01:three_prime_utr;Parent=MsG0780036261.01.T01
Chr7 mRNA 5540627 5545071 5540627 ID=MsG0780036261.01.T02;Parent=MsG0780036261.01;Name=MsG0780036261.01.T02;_AED=0.37;_eAED=0.37;_QI=142|1|1|1|0.75|0.8|5|234|274
Chr7 exon 5544816 5545071 5544816 ID=MsG0780036261.01.T02:exon:2971;Parent=MsG0780036261.01.T02
Chr7 five_prime_UTR 5544930 5545071 5544930 ID=MsG0780036261.01.T02:five_prime_utr;Parent=MsG0780036261.01.T02
Chr7 CDS 5544816 5544929 5544816 ID=MsG0780036261.01.T02:cds;Parent=MsG0780036261.01.T02
Chr7 CDS 5544179 5544403 5544179 ID=MsG0780036261.01.T02:cds;Parent=MsG0780036261.01.T02
Chr7 CDS 5541511 5541705 5541511 ID=MsG0780036261.01.T02:cds;Parent=MsG0780036261.01.T02
Chr7 CDS 5541347 5541408 5541347 ID=MsG0780036261.01.T02:cds;Parent=MsG0780036261.01.T02
Chr7 CDS 5540861 5541089 5540861 ID=MsG0780036261.01.T02:cds;Parent=MsG0780036261.01.T02
Chr7 three_prime_UTR 5540627 5540860 5540627 ID=MsG0780036261.01.T02:three_prime_utr;Parent=MsG0780036261.01.T02
Gene Sequence

>MsG0780036261.01.T02

ATGGAGGGAATAGACAGATCAAGATCAACAAGCCGTTTGGTCACTTTTACAAATGAGCTGCAAAATCGCATAACCCAAAAGCAATCAATGTATCCTCTTGGCTTCCCAAAAAAGGTATTTGCGGAGGTTATAGGGACATATTTATTGGTATTTGTTGGGAGTGGGGCTGCTGCTATGAATTCAATTGATGAAAACAAAGTCTCAAAATTGGGAGCTTCACTTGCAGGTGGATTCATTGTTACTGTTATGATTTATGCTATTGGACACATCTCTGGTGCACACATGAATCCGGCTGTTTCCTTGGCTTTTGCCACCGTTAAGCATTTTCCTTGGAAACAGGTCCCATTTTACATTGCAGCTCAACTCACAGGAGCAATTTCAGCTTCATATACACTTCGAGTTTTGTTAGAGCCATCAAAGCAGCTAGGGGGAACATCACCTTCTGGATCAAACATTCAAGCCCTAATCATAGAAATTGTGACCACCTTCACCATGGTGTTCATCTCCACTGCCGTCGCCACCGACTCAAAAGCTACGGGAGAACTTGCTGGAGTAGCAGTAGGTTCATCTGTTAGCATAGCAAGCATTGTTGCTGGACCAATATCAGGTGGGTCAATGAATCCAGCAAGGTCTTTAGGTCCTGCAATTGCTACTTCATCCTACAAAGGAATTTGGGTCTATATGGTTGGACCAATTACAGGTGCACTTTTAGGTGCATGGTCTTATGTTGTGATTCAAGAGACAGATCATAAACAAGATATTGCAACTTCACAATCTCCACTTTCAGTCAAGATACACAATGAAATGAGTGGGATTGAGCTATAA

>MsG0780036261.01.T01

ATGGAGGGAATAGACAGATCAAGATCAACAAGCCGTTTGGTCACTTTTACAAATGAGCTGCAAAATCGCATAACCCAAAAGCAATCAATGTATCCTCTTGGCTTCCCAAAAAAGGTATTTGCGGAGGTTATAGGGACATATTTATTGGTATTTGTTGGGAGTGGGGCTGCTGCTATGAATTCAATTGATGAAAACAAAGTCTCAAAATTGGGAGCTTCACTTGCAGGTGGATTCATTGTTACTGTTATGATTTATGCTATTGGACACATCTCTGGTGCACACATGAATCCGGCTGTTTCCTTGGCTTTTGCCACCGTTAAGCATTTTCCTTGGAAACAGGTCCCATTTTACATTGCAGCTCAACTCACAGGAGCAATTTCAGCTTCATATACACTTCGAGTTTTGTTAGAGCCATCAAAGCAGCTAGGGGGAACATCACCTTCTGGATCAAACATTCAAGCCCTAATCATAGAAATTGTGACCACCTTCACCATGGTGTTCATCTCCACTGCCGTCGCCACCGACTCAAAAGCTACGGGAGAACTTGCTGGAGTAGCAGTAGGTTCATCTGTTAGCATAGCAAGCATTGTTGCTGGACCAATATCAGGTGGGTCAATGAATCCAGCAAGGTCTTTAGGTCCTGCAATTGCTACTTCATCCTACAAAGGAATTTGGGTCTATATGGTTGGACCAATTACAGGTGCACTTTTAGGTGCATGGTCTTATGTTGTGATTCAAGAGACAGATCATAAACAAGATATTGCAACTTCACAATCTCCACTTTCAGTCAAGATACACAATGAAATGAGTGGGATTGAGCTATAA
Protein sequence

>MsG0780036261.01.T02

MEGIDRSRSTSRLVTFTNELQNRITQKQSMYPLGFPKKVFAEVIGTYLLVFVGSGAAAMNSIDENKVSKLGASLAGGFIVTVMIYAIGHISGAHMNPAVSLAFATVKHFPWKQVPFYIAAQLTGAISASYTLRVLLEPSKQLGGTSPSGSNIQALIIEIVTTFTMVFISTAVATDSKATGELAGVAVGSSVSIASIVAGPISGGSMNPARSLGPAIATSSYKGIWVYMVGPITGALLGAWSYVVIQETDHKQDIATSQSPLSVKIHNEMSGIEL*

>MsG0780036261.01.T01

MEGIDRSRSTSRLVTFTNELQNRITQKQSMYPLGFPKKVFAEVIGTYLLVFVGSGAAAMNSIDENKVSKLGASLAGGFIVTVMIYAIGHISGAHMNPAVSLAFATVKHFPWKQVPFYIAAQLTGAISASYTLRVLLEPSKQLGGTSPSGSNIQALIIEIVTTFTMVFISTAVATDSKATGELAGVAVGSSVSIASIVAGPISGGSMNPARSLGPAIATSSYKGIWVYMVGPITGALLGAWSYVVIQETDHKQDIATSQSPLSVKIHNEMSGIEL*