AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780037219.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780037219.01.T01 MTR_3g099830 54.633 313 133 4 4 307 62 374 4.67e-104 309
MsG0780037219.01.T01 MTR_2g007400 47.953 342 138 7 4 306 62 402 1.81e-91 278
MsG0780037219.01.T01 MTR_7g007340 51.864 295 126 6 12 301 68 351 2.92e-86 263
MsG0780037219.01.T01 MTR_2g005990 44.575 341 151 5 4 307 56 395 1.16e-81 253
MsG0780037219.01.T01 MTR_2g007360 46.708 319 133 11 12 307 70 374 7.27e-74 232
MsG0780037219.01.T01 MTR_2g008320 44.214 337 142 9 4 306 102 426 2.46e-71 228
MsG0780037219.01.T01 MTR_2g008310 44.713 331 143 8 4 306 52 370 1.14e-70 224
MsG0780037219.01.T01 MTR_1g107385 40.116 344 148 10 12 307 90 423 2.74e-63 206
MsG0780037219.01.T01 MTR_6g029350 54.680 203 80 6 109 306 2 197 2.33e-60 193
MsG0780037219.01.T01 MTR_2g007090 44.737 266 99 5 68 307 51 294 5.79e-58 189
MsG0780037219.01.T01 MTR_7g075820 38.529 340 156 11 12 307 64 394 6.18e-57 189
MsG0780037219.01.T01 MTR_7g007370 44.828 261 121 6 22 278 75 316 9.35e-55 182
MsG0780037219.01.T01 MTR_5g083890 36.202 337 170 8 1 293 53 388 4.02e-54 184
MsG0780037219.01.T01 MTR_2g007450 37.921 356 152 11 12 307 74 420 9.26e-54 181
MsG0780037219.01.T01 MTR_1g053025 36.207 348 159 10 8 307 57 389 3.94e-48 166
MsG0780037219.01.T01 MTR_3g107120 38.554 332 147 15 10 304 77 388 2.26e-43 154
MsG0780037219.01.T01 MTR_3g107100 37.572 346 148 12 12 306 69 397 7.30e-43 152
MsG0780037219.01.T01 MTR_3g107160 36.012 336 162 13 12 310 67 386 1.49e-35 132
MsG0780037219.01.T01 MTR_7g007080 38.491 265 136 12 56 307 129 379 8.17e-31 120
MsG0780037219.01.T01 MTR_7g098570 32.827 329 171 13 2 310 98 396 9.78e-31 121
MsG0780037219.01.T01 MTR_7g034120 33.779 299 160 14 25 308 34 309 1.56e-30 117
MsG0780037219.01.T01 MTR_7g083740 34.688 320 180 13 5 311 68 371 2.71e-30 118
MsG0780037219.01.T01 MTR_2g007550 32.530 332 136 12 1 304 61 332 7.88e-29 114
MsG0780037219.01.T01 MTR_7g098510 31.090 312 165 11 13 304 107 388 1.85e-27 110
MsG0780037219.01.T01 MTR_7g075800 31.655 278 150 11 31 274 119 390 1.42e-26 110
MsG0780037219.01.T01 MTR_5g045170 34.317 271 145 9 56 306 133 390 3.69e-26 107
MsG0780037219.01.T01 MTR_7g098480 32.903 310 166 11 13 307 107 389 4.57e-26 107
MsG0780037219.01.T01 MTR_1g108800 31.734 271 140 10 59 306 93 341 2.53e-25 103
MsG0780037219.01.T01 MTR_5g073420 32.692 260 142 9 59 304 137 377 2.62e-25 104
MsG0780037219.01.T01 MTR_3g026920 30.532 357 165 14 8 306 73 404 3.29e-25 104
MsG0780037219.01.T01 MTR_6g040270 29.963 267 152 7 59 306 130 380 3.93e-25 104
MsG0780037219.01.T01 MTR_7g056433 31.618 272 148 10 55 304 131 386 6.62e-25 103
MsG0780037219.01.T01 MTR_3g036250 32.700 263 142 10 55 304 123 363 8.70e-25 102
MsG0780037219.01.T01 MTR_1g085120 32.963 270 139 9 65 309 221 473 1.00e-24 103
MsG0780037219.01.T01 MTR_1g085120 32.727 275 143 9 60 309 291 548 1.55e-24 103
MsG0780037219.01.T01 MTR_4g098590 37.349 249 138 8 54 291 125 366 2.00e-24 102
MsG0780037219.01.T01 MTR_5g073370 31.022 274 160 7 55 313 127 386 5.15e-24 101
MsG0780037219.01.T01 MTR_7g055943 32.959 267 145 9 65 309 169 423 1.26e-23 100
MsG0780037219.01.T01 MTR_2g007500 36.530 219 111 8 54 251 119 330 1.55e-23 99.0
MsG0780037219.01.T01 MTR_7g056277 34.586 266 136 13 60 309 385 628 1.86e-23 100
MsG0780037219.01.T01 MTR_3g071850 32.342 269 144 9 56 299 146 401 3.03e-23 100
MsG0780037219.01.T01 MTR_2g007610 43.609 133 68 4 177 309 28 153 9.37e-23 93.2
MsG0780037219.01.T01 MTR_7g088260 32.959 267 146 11 56 304 208 459 1.76e-22 97.4
MsG0780037219.01.T01 MTR_7g033990 33.649 211 111 9 84 282 161 354 2.23e-22 97.1
MsG0780037219.01.T01 MTR_1089s0010 29.478 268 156 7 59 309 130 381 2.37e-22 96.3
MsG0780037219.01.T01 MTR_4g039440 32.353 272 142 8 65 309 158 414 7.39e-22 95.5
MsG0780037219.01.T01 MTR_6g022500 32.210 267 139 9 65 308 230 477 9.66e-22 95.5
MsG0780037219.01.T01 MTR_6g011460 32.975 279 145 9 56 311 166 425 1.83e-21 94.4
MsG0780037219.01.T01 MTR_3g087260 33.213 277 152 11 47 304 192 454 3.40e-21 94.0
MsG0780037219.01.T01 MTR_7g026500 31.274 259 142 11 65 304 151 392 6.05e-21 92.8
MsG0780037219.01.T01 MTR_5g054920 33.854 192 102 8 105 283 2 181 7.54e-21 88.6
MsG0780037219.01.T01 MTR_6g045333 32.404 287 132 11 56 305 183 444 9.28e-21 92.4
MsG0780037219.01.T01 MTR_5g058100 29.226 349 174 13 10 309 62 386 1.52e-20 91.3
MsG0780037219.01.T01 MTR_5g007410 31.522 276 147 10 56 304 145 405 1.71e-20 91.7
MsG0780037219.01.T01 MTR_7g033915 30.211 331 163 17 11 305 65 363 3.28e-20 90.1
MsG0780037219.01.T01 MTR_5g008950 27.832 309 181 13 23 304 69 362 3.87e-20 90.1
MsG0780037219.01.T01 MTR_7g032370 31.081 296 162 13 29 305 78 350 6.06e-20 89.4
MsG0780037219.01.T01 MTR_7g115270 29.603 277 156 9 55 304 135 399 6.06e-20 89.7
MsG0780037219.01.T01 MTR_5g058000 30.838 334 172 14 10 305 61 373 6.49e-20 89.4
MsG0780037219.01.T01 MTR_7g032380 31.439 264 130 11 55 305 129 354 8.21e-20 89.0
MsG0780037219.01.T01 MTR_3g023630 32.836 268 137 12 56 304 128 371 1.24e-19 88.6
MsG0780037219.01.T01 MTR_6g022360 33.088 272 143 11 56 304 150 405 1.27e-19 89.0
MsG0780037219.01.T01 MTR_1g066830 28.197 305 177 10 26 305 98 385 1.39e-19 88.6
MsG0780037219.01.T01 MTR_0543s0010 30.337 267 152 8 55 304 198 447 1.56e-19 89.0
MsG0780037219.01.T01 MTR_3g106960 40.625 160 79 8 146 299 41 190 1.82e-19 85.9
MsG0780037219.01.T01 MTR_1g108820 30.249 281 142 12 59 306 126 385 4.14e-19 87.4
MsG0780037219.01.T01 MTR_7g034115 27.385 325 186 11 11 299 65 375 7.45e-19 86.7
MsG0780037219.01.T01 MTR_5g013500 29.151 271 144 12 67 303 105 361 9.46e-19 85.9
MsG0780037219.01.T01 MTR_5g031970 31.783 258 139 11 59 306 125 355 1.61e-18 85.1
MsG0780037219.01.T01 MTR_7g056020 30.268 261 147 8 60 301 124 368 1.67e-18 86.3
MsG0780037219.01.T01 MTR_5g039450 29.630 243 129 6 85 304 132 355 2.63e-18 84.7
MsG0780037219.01.T01 MTR_3g108150 30.370 270 154 11 56 304 128 384 6.61e-18 84.0
MsG0780037219.01.T01 MTR_1g053050 50.000 82 38 2 226 307 37 115 1.23e-17 77.8
MsG0780037219.01.T01 MTR_7g056280 35.795 176 102 6 136 304 399 570 1.44e-17 83.6
MsG0780037219.01.T01 MTR_6g022520 31.159 276 147 9 60 309 57 315 1.79e-17 82.0
MsG0780037219.01.T01 MTR_0492s0020 32.489 237 131 9 55 279 198 417 2.66e-17 82.4
MsG0780037219.01.T01 MTR_2g036470 30.182 275 154 10 56 306 135 395 2.91e-17 82.0
MsG0780037219.01.T01 MTR_0009s0080 32.400 250 131 11 56 283 138 371 4.62e-17 81.6
MsG0780037219.01.T01 MTR_7g034090 35.503 169 87 5 152 310 159 315 1.08e-16 80.5
MsG0780037219.01.T01 MTR_5g063950 29.851 268 151 10 59 304 107 359 1.14e-16 80.1
MsG0780037219.01.T01 MTR_5g045510 28.996 269 141 8 59 306 132 371 2.74e-16 79.0
MsG0780037219.01.T01 MTR_5g073340 32.110 218 112 9 64 261 110 311 3.02e-16 78.2
MsG0780037219.01.T01 MTR_3g108560 28.826 281 161 9 46 304 123 386 6.19e-16 78.2
MsG0780037219.01.T01 MTR_7g114710 30.859 256 125 10 65 304 142 361 6.91e-16 77.8
MsG0780037219.01.T01 MTR_1g085120 34.503 171 88 5 60 210 303 469 7.85e-16 78.2
MsG0780037219.01.T01 MTR_5g008920 29.434 265 158 12 55 304 128 378 2.37e-14 73.6
MsG0780037219.01.T01 MTR_5g039470 29.918 244 132 7 55 275 100 327 2.97e-14 72.8
MsG0780037219.01.T01 MTR_2g007530 27.928 333 149 13 1 306 68 336 5.34e-14 72.0
MsG0780037219.01.T01 MTR_7g056430 26.837 313 164 12 17 301 84 359 7.27e-14 72.8
MsG0780037219.01.T01 MTR_7g056420 27.333 300 154 11 29 301 97 359 8.56e-14 72.4
MsG0780037219.01.T01 MTR_3g109982 32.636 239 130 9 56 279 220 442 1.49e-13 71.6
MsG0780037219.01.T01 MTR_6g044572 29.008 262 142 8 65 310 158 391 3.08e-13 70.1
MsG0780037219.01.T01 MTR_6g044560 28.889 270 148 8 60 313 329 570 3.72e-13 70.5
MsG0780037219.01.T01 MTR_3g467400 26.361 349 183 15 1 304 45 364 4.25e-11 63.5
MsG0780037219.01.T01 MTR_3g082890 28.016 257 144 10 55 281 211 456 6.07e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 55 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGGTGCTGAACTATAAT+TGG 0.105146 7:-22018804 MsG0780037219.01.T01:CDS
AGGTAGCCTGGAACAAATTT+TGG 0.198081 7:+22018572 None:intergenic
GTCTTTGGAGCCAGAGTCTT+TGG 0.210097 7:+22019419 None:intergenic
TTCCATCCGCAGTTTCATTC+TGG 0.247559 7:-22019340 MsG0780037219.01.T01:CDS
AGGATAGAATAAGGCAATTC+AGG 0.264936 7:+22019267 None:intergenic
TCAAAATCTTGACCTTTATC+AGG 0.270976 7:-22018743 MsG0780037219.01.T01:intron
GCACCAAATGAGTCAAATTA+TGG 0.288597 7:+22018818 None:intergenic
AAATTCGTCGAAGCTGTCTT+TGG 0.307271 7:+22019404 None:intergenic
GTTCCATAATTTGACTCATT+TGG 0.323958 7:-22018821 MsG0780037219.01.T01:CDS
GCACTTATGCAGGCTGGAAC+TGG 0.327088 7:-22019047 MsG0780037219.01.T01:CDS
AATTGCCTTATTCTATCCTT+TGG 0.327090 7:-22019263 MsG0780037219.01.T01:CDS
CGACTTTATGATCTCGTTGT+TGG 0.361059 7:-22019297 MsG0780037219.01.T01:CDS
GTACACCAAAGGATAGAATA+AGG 0.370071 7:+22019258 None:intergenic
TGCCTTTGATTACTTCAAAT+AGG 0.370732 7:+22019067 None:intergenic
ACCCATCCAAAATTTGTTCC+AGG 0.377854 7:-22018578 MsG0780037219.01.T01:CDS
ACTATGCGGGACCTTGCATT+TGG 0.384934 7:-22018527 MsG0780037219.01.T01:CDS
TGCTCTGTTCAACATTGTTA+AGG 0.395002 7:+22019020 None:intergenic
AGGTAAAGATCTTCAAGAAT+TGG 0.397337 7:+22019087 None:intergenic
GACGATTAACCTCGTGTTCA+AGG 0.400521 7:-22018397 MsG0780037219.01.T01:CDS
AGGTTTGATGAAAGGTAGCC+TGG 0.404861 7:+22018560 None:intergenic
TTAATAAACAAACCTGATAA+AGG 0.415704 7:+22018731 None:intergenic
GATCTCATGAATCTTATAGA+AGG 0.426483 7:-22019114 MsG0780037219.01.T01:CDS
TTTGGTGCTGAACTATAATT+GGG 0.435209 7:-22018803 MsG0780037219.01.T01:CDS
CTATGTCAATCTGGTGCTCC+AGG 0.443857 7:-22018439 MsG0780037219.01.T01:CDS
CACTTATGCAGGCTGGAACT+GGG 0.462576 7:-22019046 MsG0780037219.01.T01:CDS
ATGCGGGACCTTGCATTTGG+AGG 0.466903 7:-22018524 MsG0780037219.01.T01:CDS
GAGGGTAATGTTACGTGAAA+AGG 0.471986 7:+22019183 None:intergenic
GGATAGAATAAGGCAATTCA+GGG 0.475367 7:+22019268 None:intergenic
CCTTAAAACTTGTACTATGC+GGG 0.489288 7:-22018540 MsG0780037219.01.T01:CDS
AAAAGCTTATTTACCTATGT+CGG 0.495392 7:+22018326 None:intergenic
GACAATATATGCGTGAAACC+TGG 0.497289 7:-22018601 MsG0780037219.01.T01:CDS
CAATCTGGTGCTCCAGGAAA+CGG 0.509574 7:-22018433 MsG0780037219.01.T01:CDS
GTAATCAAAGGCACTTATGC+AGG 0.510126 7:-22019057 MsG0780037219.01.T01:CDS
TTCATGGAAGCCAAAGACTC+TGG 0.519933 7:-22019429 MsG0780037219.01.T01:CDS
AAGGGTAGTGTTGCCGACAT+AGG 0.522344 7:-22018339 None:intergenic
TACCTATTTGAAGTAATCAA+AGG 0.524388 7:-22019069 MsG0780037219.01.T01:CDS
TTCTACGCATAAGACTATCC+AGG 0.534923 7:-22018948 MsG0780037219.01.T01:CDS
TCAAAGGCACTTATGCAGGC+TGG 0.542665 7:-22019053 MsG0780037219.01.T01:CDS
ACATAATGTGATAGCTCTGT+AGG 0.546243 7:+22018501 None:intergenic
TCATGCCCACAAAAGCAGTC+TGG 0.547651 7:+22018632 None:intergenic
ACGATTAACCTCGTGTTCAA+GGG 0.555423 7:-22018396 MsG0780037219.01.T01:CDS
ATTGCGGTCGCGACAAACTG+CGG 0.562636 7:-22019370 MsG0780037219.01.T01:CDS
TTGCGGTCGCGACAAACTGC+GGG 0.573462 7:-22019369 MsG0780037219.01.T01:CDS
AAAATAATGCAGGGTTGTCG+AGG 0.583040 7:-22018859 MsG0780037219.01.T01:intron
AATTTGTTTACTACGTATTG+CGG 0.601388 7:-22019386 MsG0780037219.01.T01:CDS
CAACAAGTGTTGTACACCAA+AGG 0.606070 7:+22019247 None:intergenic
ACCTTAAAACTTGTACTATG+CGG 0.612983 7:-22018541 MsG0780037219.01.T01:CDS
TGCAGAAGCCCTTGAACACG+AGG 0.614415 7:+22018388 None:intergenic
TGAGTCAAATTATGGAACGT+AGG 0.635708 7:+22018826 None:intergenic
TCTACGCATAAGACTATCCA+GGG 0.638723 7:-22018947 MsG0780037219.01.T01:intron
TCTGTAGGCCTCCAAATGCA+AGG 0.638907 7:+22018516 None:intergenic
GTCCAGAATGAAACTGCGGA+TGG 0.646917 7:+22019338 None:intergenic
GATAGAATAAGGCAATTCAG+GGG 0.647302 7:+22019269 None:intergenic
ATAGAATAAGGCAATTCAGG+GGG 0.677310 7:+22019270 None:intergenic
TAATGTCCAGAATGAAACTG+CGG 0.756588 7:+22019334 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAACTCAATTTTATTAATAT+GGG - Chr7:22018547-22018566 MsG0780037219.01.T01:CDS 10.0%
!!! AACTTTCAATTTATTTTAAA+AGG - Chr7:22019408-22019427 MsG0780037219.01.T01:CDS 10.0%
!!! ACTTTCAATTTATTTTAAAA+GGG - Chr7:22019409-22019428 MsG0780037219.01.T01:CDS 10.0%
!!! TAAACTCAATTTTATTAATA+TGG - Chr7:22018546-22018565 MsG0780037219.01.T01:CDS 10.0%
!! TTAATAAACAAACCTGATAA+AGG + Chr7:22019038-22019057 None:intergenic 20.0%
!! TTTAAATGATATATATACCC+TGG + Chr7:22018839-22018858 None:intergenic 20.0%
!!! ATACTGTTTTAAAATAATGC+AGG - Chr7:22018897-22018916 MsG0780037219.01.T01:intron 20.0%
!!! TACTGTTTTAAAATAATGCA+GGG - Chr7:22018898-22018917 MsG0780037219.01.T01:intron 20.0%
!! AATTTGTTTACTACGTATTG+CGG - Chr7:22018380-22018399 MsG0780037219.01.T01:CDS 25.0%
!! TACCTATTTGAAGTAATCAA+AGG - Chr7:22018697-22018716 MsG0780037219.01.T01:intron 25.0%
!! TTGCAACGAAATTTTACATT+CGG + Chr7:22018779-22018798 None:intergenic 25.0%
!! TTTTAGATACTATGTCAATC+TGG - Chr7:22019318-22019337 MsG0780037219.01.T01:CDS 25.0%
!!! AAGTTTTAAGGTTTGATGAA+AGG + Chr7:22019217-22019236 None:intergenic 25.0%
ACCTTAAAACTTGTACTATG+CGG - Chr7:22019225-22019244 MsG0780037219.01.T01:CDS 30.0%
AGGTAAAGATCTTCAAGAAT+TGG + Chr7:22018682-22018701 None:intergenic 30.0%
GATCTCATGAATCTTATAGA+AGG - Chr7:22018652-22018671 MsG0780037219.01.T01:intron 30.0%
GTTCCATAATTTGACTCATT+TGG - Chr7:22018945-22018964 MsG0780037219.01.T01:intron 30.0%
TCAAAATCTTGACCTTTATC+AGG - Chr7:22019023-22019042 MsG0780037219.01.T01:CDS 30.0%
TGCCTTTGATTACTTCAAAT+AGG + Chr7:22018702-22018721 None:intergenic 30.0%
! AATTGCCTTATTCTATCCTT+TGG - Chr7:22018503-22018522 MsG0780037219.01.T01:CDS 30.0%
!! ACCAAATGTTTTTCAAACGT+AGG + Chr7:22018618-22018637 None:intergenic 30.0%
!! ATTTGGTGCTGAACTATAAT+TGG - Chr7:22018962-22018981 MsG0780037219.01.T01:CDS 30.0%
!! CCAAATGTTTTTCAAACGTA+GGG + Chr7:22018617-22018636 None:intergenic 30.0%
!! TTTGGTGCTGAACTATAATT+GGG - Chr7:22018963-22018982 MsG0780037219.01.T01:CDS 30.0%
AGGATAGAATAAGGCAATTC+AGG + Chr7:22018502-22018521 None:intergenic 35.0%
ATAGAATAAGGCAATTCAGG+GGG + Chr7:22018499-22018518 None:intergenic 35.0%
CCCTACGTTTGAAAAACATT+TGG - Chr7:22018614-22018633 MsG0780037219.01.T01:CDS 35.0%
CCTTAAAACTTGTACTATGC+GGG - Chr7:22019226-22019245 MsG0780037219.01.T01:CDS 35.0%
GATAGAATAAGGCAATTCAG+GGG + Chr7:22018500-22018519 None:intergenic 35.0%
GCACCAAATGAGTCAAATTA+TGG + Chr7:22018951-22018970 None:intergenic 35.0%
GGATAGAATAAGGCAATTCA+GGG + Chr7:22018501-22018520 None:intergenic 35.0%
GTACACCAAAGGATAGAATA+AGG + Chr7:22018511-22018530 None:intergenic 35.0%
TAATGTCCAGAATGAAACTG+CGG + Chr7:22018435-22018454 None:intergenic 35.0%
TGAGTCAAATTATGGAACGT+AGG + Chr7:22018943-22018962 None:intergenic 35.0%
TGCTCTGTTCAACATTGTTA+AGG + Chr7:22018749-22018768 None:intergenic 35.0%
! ACATAATGTGATAGCTCTGT+AGG + Chr7:22019268-22019287 None:intergenic 35.0%
!! ATAATACCAGACTGCTTTTG+TGG - Chr7:22019128-22019147 MsG0780037219.01.T01:CDS 35.0%
!! TAATACCAGACTGCTTTTGT+GGG - Chr7:22019129-22019148 MsG0780037219.01.T01:CDS 35.0%
!! TTCTATTTTAGACCGTTTCC+TGG + Chr7:22019348-22019367 None:intergenic 35.0%
!!! GATTTTGAAGCTTCAGACAA+TGG + Chr7:22019011-22019030 None:intergenic 35.0%
AAAATAATGCAGGGTTGTCG+AGG - Chr7:22018907-22018926 MsG0780037219.01.T01:intron 40.0%
AAATTCGTCGAAGCTGTCTT+TGG + Chr7:22018365-22018384 None:intergenic 40.0%
ACGATTAACCTCGTGTTCAA+GGG - Chr7:22019370-22019389 MsG0780037219.01.T01:CDS 40.0%
CGACTTTATGATCTCGTTGT+TGG - Chr7:22018469-22018488 MsG0780037219.01.T01:CDS 40.0%
GACAATATATGCGTGAAACC+TGG - Chr7:22019165-22019184 MsG0780037219.01.T01:CDS 40.0%
GAGGGTAATGTTACGTGAAA+AGG + Chr7:22018586-22018605 None:intergenic 40.0%
TCTACGCATAAGACTATCCA+GGG - Chr7:22018819-22018838 MsG0780037219.01.T01:CDS 40.0%
TTCTACGCATAAGACTATCC+AGG - Chr7:22018818-22018837 MsG0780037219.01.T01:CDS 40.0%
! AACAAATTTTGGATGGGTCC+AGG + Chr7:22019186-22019205 None:intergenic 40.0%
! ACCCATCCAAAATTTGTTCC+AGG - Chr7:22019188-22019207 MsG0780037219.01.T01:CDS 40.0%
! AGACAATGGAGCAGCATTTT+TGG + Chr7:22018997-22019016 None:intergenic 40.0%
! AGCCTGGAACAAATTTTGGA+TGG + Chr7:22019193-22019212 None:intergenic 40.0%
! AGGTAGCCTGGAACAAATTT+TGG + Chr7:22019197-22019216 None:intergenic 40.0%
! CAACAAGTGTTGTACACCAA+AGG + Chr7:22018522-22018541 None:intergenic 40.0%
! CCCGCATAGTACAAGTTTTA+AGG + Chr7:22019229-22019248 None:intergenic 40.0%
! GCCTGGAACAAATTTTGGAT+GGG + Chr7:22019192-22019211 None:intergenic 40.0%
! TTTTGTGGGCATGACTACTT+TGG - Chr7:22019143-22019162 MsG0780037219.01.T01:CDS 40.0%
!! GTAATCAAAGGCACTTATGC+AGG - Chr7:22018709-22018728 MsG0780037219.01.T01:intron 40.0%
!!! AAACGTAGGGTTTTGAGTGA+GGG + Chr7:22018604-22018623 None:intergenic 40.0%
AGGTTTGATGAAAGGTAGCC+TGG + Chr7:22019209-22019228 None:intergenic 45.0%
GACGATTAACCTCGTGTTCA+AGG - Chr7:22019369-22019388 MsG0780037219.01.T01:CDS 45.0%
TTCCATCCGCAGTTTCATTC+TGG - Chr7:22018426-22018445 MsG0780037219.01.T01:CDS 45.0%
!!! CAAACGTAGGGTTTTGAGTG+AGG + Chr7:22018605-22018624 None:intergenic 45.0%
ACTATGCGGGACCTTGCATT+TGG - Chr7:22019239-22019258 MsG0780037219.01.T01:CDS 50.0%
CAATCTGGTGCTCCAGGAAA+CGG - Chr7:22019333-22019352 MsG0780037219.01.T01:CDS 50.0%
CACTTATGCAGGCTGGAACT+GGG - Chr7:22018720-22018739 MsG0780037219.01.T01:intron 50.0%
CTATGTCAATCTGGTGCTCC+AGG - Chr7:22019327-22019346 MsG0780037219.01.T01:CDS 50.0%
GTCCAGAATGAAACTGCGGA+TGG + Chr7:22018431-22018450 None:intergenic 50.0%
TCATGCCCACAAAAGCAGTC+TGG + Chr7:22019137-22019156 None:intergenic 50.0%
TCTGTAGGCCTCCAAATGCA+AGG + Chr7:22019253-22019272 None:intergenic 50.0%
!! GTCTTTGGAGCCAGAGTCTT+TGG + Chr7:22018350-22018369 None:intergenic 50.0%
!! TCAAAGGCACTTATGCAGGC+TGG - Chr7:22018713-22018732 MsG0780037219.01.T01:intron 50.0%
ATGCGGGACCTTGCATTTGG+AGG - Chr7:22019242-22019261 MsG0780037219.01.T01:CDS 55.0%
ATTGCGGTCGCGACAAACTG+CGG - Chr7:22018396-22018415 MsG0780037219.01.T01:CDS 55.0%
GCACTTATGCAGGCTGGAAC+TGG - Chr7:22018719-22018738 MsG0780037219.01.T01:intron 55.0%
TGCAGAAGCCCTTGAACACG+AGG + Chr7:22019381-22019400 None:intergenic 55.0%
TTGCGGTCGCGACAAACTGC+GGG - Chr7:22018397-22018416 MsG0780037219.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 22018340 22019448 22018340 ID=MsG0780037219.01;Name=MsG0780037219.01
Chr7 mRNA 22018340 22019448 22018340 ID=MsG0780037219.01.T01;Parent=MsG0780037219.01;Name=MsG0780037219.01.T01;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|1|1|3|0|315
Chr7 exon 22018948 22019448 22018948 ID=MsG0780037219.01.T01:exon:4331;Parent=MsG0780037219.01.T01
Chr7 exon 22018744 22018869 22018744 ID=MsG0780037219.01.T01:exon:4330;Parent=MsG0780037219.01.T01
Chr7 exon 22018340 22018660 22018340 ID=MsG0780037219.01.T01:exon:4329;Parent=MsG0780037219.01.T01
Chr7 CDS 22018948 22019448 22018948 ID=MsG0780037219.01.T01:cds;Parent=MsG0780037219.01.T01
Chr7 CDS 22018744 22018869 22018744 ID=MsG0780037219.01.T01:cds;Parent=MsG0780037219.01.T01
Chr7 CDS 22018340 22018660 22018340 ID=MsG0780037219.01.T01:cds;Parent=MsG0780037219.01.T01
Gene Sequence

>MsG0780037219.01.T01

ATGGAAGCCAAAGACTCTGGCTCCAAAGACAGCTTCGACGAATTTGTTTACTACGTATTGCGGTCGCGACAAACTGCGGGTAATCATTCCATCCGCAGTTTCATTCTGGACATTAAACATGATTCATCTCGACTTTATGATCTCGTTGTTGGTGATCCCCCTGAATTGCCTTATTCTATCCTTTGGTGTACAACACTTGTTGTTCTTAAACTCAATTTTATTAATATGGGTGACAACTTTTCTCCTTTTCACGTAACATTACCCTCACTCAAAACCCTACGTTTGAAAAACATTTGGTTTGAACAAGATGATGATCTCATGAATCTTATAGAAGGATGTCCAATTCTTGAAGATCTTTACCTATTTGAAGTAATCAAAGGCACTTATGCAGGCTGGAACTGGGACACCTTAACAATGTTGAACAGAGCAGATGTTACCGAATGTAAAATTTCGTTGCAAGCAATTTCAAATGTCGAGTTTCTACGCATAAGACTATCCAGGGGTTGTCGAGGTCTTCATTTTCCTACGTTCCATAATTTGACTCATTTGGTGCTGAACTATAATTGGGATACAGTTCCAAAAATGCTGCTCCATTGTCTGAAGCTTCAAAATCTTGACCTTTATCAGATAATACCAGACTGCTTTTGTGGGCATGACTACTTTGGACAATATATGCGTGAAACCTGGACCCATCCAAAATTTGTTCCAGGCTACCTTTCATCAAACCTTAAAACTTGTACTATGCGGGACCTTGCATTTGGAGGCCTACAGAGCTATCACATTATGTTAGCAAAATTTATTCTGAAGAATTCATCAGTTTTAGATACTATGTCAATCTGGTGCTCCAGGAAACGGTCTAAAATAGAAAGACGATTAACCTCGTGTTCAAGGGCTTCTGCAACGTGTCAACTTTCAATTTATTTTAAAAGGGTAGTGTTGCCGACATAG
Protein sequence

>MsG0780037219.01.T01

MEAKDSGSKDSFDEFVYYVLRSRQTAGNHSIRSFILDIKHDSSRLYDLVVGDPPELPYSILWCTTLVVLKLNFINMGDNFSPFHVTLPSLKTLRLKNIWFEQDDDLMNLIEGCPILEDLYLFEVIKGTYAGWNWDTLTMLNRADVTECKISLQAISNVEFLRIRLSRGCRGLHFPTFHNLTHLVLNYNWDTVPKMLLHCLKLQNLDLYQIIPDCFCGHDYFGQYMRETWTHPKFVPGYLSSNLKTCTMRDLAFGGLQSYHIMLAKFILKNSSVLDTMSIWCSRKRSKIERRLTSCSRASATCQLSIYFKRVVLPT*