AlfalfaGEDB | MsG0780037413.01

M. sativa cultivar ZhongmuNo.1 / MsG0780037413.01

KEGG: K00231
GO: GO:0016491 GO:0055114
PFAM: PF01593

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037413.01.T01	TQD73770.1	59.593	344	89	7	83	392	419	746	1.22E-124	387
MsG0780037413.01.T01	TQD73770.1	55.385	130	29	2	169	269	240	369	6.20E-31	136
MsG0780037413.01.T01	TQD73770.1	66.667	99	32	1	56	154	12	109	1.25E-28	130

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037413.01.T01	Q94IG7	55.378	251	80	3	169	387	271	521	1.56E-83	267

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037413.01.T01	A0A4S4F0B5	50.353	425	158	5	18	393	27	447	1.90e-131	394

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180004711.01	MsG0780037413.01	0.805676	1.189976e-49	6.334281e-47
MsG0380016920.01	MsG0780037413.01	0.821493	3.920377e-53	3.194331e-50
MsG0780037413.01	MsG0880043614.01	0.855212	7.342729e-62	1.682300e-58
MsG0780037413.01	MsG0880045691.01	0.810153	1.327781e-50	7.944044e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037413.01.T01	MTR_7g031310	75.391	256	33	2	169	394	243	498	1.70e-125	371
MsG0780037413.01.T01	MTR_7g031310	83.838	99	15	1	56	154	12	109	1.24e-44	161

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037413.01.T01	AT5G14220	52.896	259	86	4	169	393	187	443	8.93e-82	258
MsG0780037413.01.T01	AT5G14220	67.925	53	17	0	102	154	2	54	2.19e-17	84.0
MsG0780037413.01.T01	AT5G14220	52.896	259	86	4	169	393	187	443	8.93e-82	258
MsG0780037413.01.T01	AT5G14220	67.925	53	17	0	102	154	2	54	2.19e-17	84.0
MsG0780037413.01.T01	AT5G14220	52.896	259	86	4	169	393	215	471	1.09e-81	258
MsG0780037413.01.T01	AT5G14220	58.333	108	42	2	46	153	7	111	6.25e-30	120
MsG0780037413.01.T01	AT5G14220	52.896	259	86	4	169	393	245	501	2.91e-81	258
MsG0780037413.01.T01	AT5G14220	57.798	109	43	2	46	154	7	112	6.59e-30	121
MsG0780037413.01.T01	AT5G14220	52.896	259	86	4	169	393	293	549	1.51e-80	258
MsG0780037413.01.T01	AT5G14220	57.798	109	43	2	46	154	55	160	1.04e-29	120

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Find 102 sgRNAs with CRISPR-Local

Find 689 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGGGGAAACGGCGTT+TGG	0.439421	7:-25366315	None:intergenic
AAAGCTGTTGGGAGCGGAGG+GGG	0.398693	7:+25376468	MsG0780037413.01.T01:CDS
AAAGGGTGTGCATTAAAATT+GGG	0.426222	7:+25378068	MsG0780037413.01.T01:three_prime_UTR
AAAGGTTTGATTGATGCTCT+TGG	0.449228	7:+25369874	MsG0780037413.01.T01:CDS
AACAATGCTTCAGACAACAG+TGG	0.735325	7:+25377868	MsG0780037413.01.T01:CDS
AAGAGACCACTGGAGGGTTT+TGG	0.296122	7:+25375877	MsG0780037413.01.T01:CDS
AAGCTGAAGGAAGAGCTGGA+GGG	0.694070	7:+25369114	MsG0780037413.01.T01:CDS
AATAGACCAGTTCTGCGATG+GGG	0.696683	7:-25373997	None:intergenic
AATATGAGCTTCAGCGGAAC+CGG	0.435353	7:-25366395	None:intergenic
AATGTAAAGAGACCACTGGA+GGG	0.707965	7:+25375871	MsG0780037413.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACAAAAAACAGAGATCC+TGG	-	Chr7:25366653-25366672	None:intergenic	30.0%
AAGCGCTATATTGTGAAAAA+TGG	+	Chr7:25370489-25370508	MsG0780037413.01.T01:CDS	30.0%
AATGGTAATAATGTGCATCA+TGG	-	Chr7:25368979-25368998	None:intergenic	30.0%
ACAGAGAATAGAAACTGAAA+TGG	-	Chr7:25366570-25366589	None:intergenic	30.0%
ACTGTTTATAACTTCAGACT+TGG	+	Chr7:25375443-25375462	MsG0780037413.01.T01:intron	30.0%
AGAACAACATCTATCAGTAA+GGG	+	Chr7:25375733-25375752	MsG0780037413.01.T01:intron	30.0%
AGCGCTATATTGTGAAAAAT+GGG	+	Chr7:25370490-25370509	MsG0780037413.01.T01:CDS	30.0%
AGTAAAGGCTTTCCTTTATA+TGG	+	Chr7:25376585-25376604	MsG0780037413.01.T01:CDS	30.0%
AGTAATTATGACGGTTAGTA+TGG	+	Chr7:25374058-25374077	MsG0780037413.01.T01:intron	30.0%
ATATATACAAATTGGCCGAA+TGG	+	Chr7:25372457-25372476	MsG0780037413.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	25366268	25378100	25366268	ID=MsG0780037413.01;Name=MsG0780037413.01
Chr7	mRNA	25366268	25378100	25366268	ID=MsG0780037413.01.T01;Parent=MsG0780037413.01;Name=MsG0780037413.01.T01;_AED=0.54;_eAED=0.60;_QI=0\|0.36\|0.5\|0.91\|1\|1\|12\|203\|396
Chr7	exon	25377788	25378100	25377788	ID=MsG0780037413.01.T01:exon:5604;Parent=MsG0780037413.01.T01
Chr7	exon	25376572	25376678	25376572	ID=MsG0780037413.01.T01:exon:5603;Parent=MsG0780037413.01.T01
Chr7	exon	25376432	25376506	25376432	ID=MsG0780037413.01.T01:exon:5602;Parent=MsG0780037413.01.T01
Chr7	exon	25375823	25376040	25375823	ID=MsG0780037413.01.T01:exon:5601;Parent=MsG0780037413.01.T01
Chr7	exon	25373903	25374070	25373903	ID=MsG0780037413.01.T01:exon:5600;Parent=MsG0780037413.01.T01
Chr7	exon	25372873	25372913	25372873	ID=MsG0780037413.01.T01:exon:5599;Parent=MsG0780037413.01.T01
Chr7	exon	25370474	25370537	25370474	ID=MsG0780037413.01.T01:exon:5598;Parent=MsG0780037413.01.T01
Chr7	exon	25369853	25369918	25369853	ID=MsG0780037413.01.T01:exon:5597;Parent=MsG0780037413.01.T01
Chr7	exon	25369099	25369193	25369099	ID=MsG0780037413.01.T01:exon:5596;Parent=MsG0780037413.01.T01
Chr7	exon	25368172	25368220	25368172	ID=MsG0780037413.01.T01:exon:5595;Parent=MsG0780037413.01.T01
Chr7	exon	25367877	25367911	25367877	ID=MsG0780037413.01.T01:exon:5594;Parent=MsG0780037413.01.T01
Chr7	exon	25366268	25366430	25366268	ID=MsG0780037413.01.T01:exon:5593;Parent=MsG0780037413.01.T01
Chr7	CDS	25366268	25366430	25366268	ID=MsG0780037413.01.T01:cds;Parent=MsG0780037413.01.T01
Chr7	CDS	25367877	25367911	25367877	ID=MsG0780037413.01.T01:cds;Parent=MsG0780037413.01.T01
Chr7	CDS	25368172	25368220	25368172	ID=MsG0780037413.01.T01:cds;Parent=MsG0780037413.01.T01
Chr7	CDS	25369099	25369193	25369099	ID=MsG0780037413.01.T01:cds;Parent=MsG0780037413.01.T01
Chr7	CDS	25369853	25369918	25369853	ID=MsG0780037413.01.T01:cds;Parent=MsG0780037413.01.T01
Chr7	CDS	25370474	25370537	25370474	ID=MsG0780037413.01.T01:cds;Parent=MsG0780037413.01.T01
Chr7	CDS	25372873	25372913	25372873	ID=MsG0780037413.01.T01:cds;Parent=MsG0780037413.01.T01
Chr7	CDS	25373903	25374070	25373903	ID=MsG0780037413.01.T01:cds;Parent=MsG0780037413.01.T01
Chr7	CDS	25375823	25376040	25375823	ID=MsG0780037413.01.T01:cds;Parent=MsG0780037413.01.T01
Chr7	CDS	25376432	25376506	25376432	ID=MsG0780037413.01.T01:cds;Parent=MsG0780037413.01.T01
Chr7	CDS	25376572	25376678	25376572	ID=MsG0780037413.01.T01:cds;Parent=MsG0780037413.01.T01
Chr7	CDS	25377788	25377897	25377788	ID=MsG0780037413.01.T01:cds;Parent=MsG0780037413.01.T01
Chr7	three_prime_UTR	25377898	25378100	25377898	ID=MsG0780037413.01.T01:three_prime_utr;Parent=MsG0780037413.01.T01

Gene Sequence

>MsG0780037413.01.T01

ATGTGTTTGGCATCACTTTTCCACAAGCCTAACCTCCGTTTCTTTTGCCAAACGCCGTTTCCCCAATTTTCATCTTGTTTGGATGAAGAAAAAGCGATTCCAGGAAACGTGATTTTAGGCCAAAACGCCGGTTCCGCTGAAGCTCATATTCCTAGCTTCTGCGGATCTGTTAAAAGAGTTGCTGTTGTTGGTGCTGGTACACGTCTTCAATTAGAAGTGTTGGTGCTACAGATCGTAACTGTAACAAATGTAACTGTATTTGAAGCTGAAGGAAGAGCTGGAGGGAGGCTAAGAACTGTTTCTCGAGATGGGCTAGTCTGGGACGAGGGAGCTAATACAATGACTGAAAATGAAATAGAGGTTAAAGGTTTGATTGATGCTCTTGGACTTCATGAAAAACAACAATATCCATTGTCACAGCATAAGCGCTATATTGTGAAAAATGGGACACCAGTTCTGGTATGTCTTGCTAATGCGCCATTCTTTCCCAGAGCTATGGAATTTGGAGAAAAGACACTGACTGATACATTGTGCAAAGAGCTTGGCAAAGATGACATTAAATTAAATGCGAAGGTTCTGACACTAGCTTACAGTCACGATGGAAGTTCCCCATCGCAGAACTGGTCTATTACTTGTGCTTCTAACCGAAAAACACAAGATGTTGATGCAGTAATTATGACGGTGACCTATTTACCACTCTCAGTCTTAATAACCACCTTTAAAAAGGAGAATGTAAAGAGACCACTGGAGGGTTTTGGAGTTCTTGTTCCTTCAAAAGAGCAACAAAATGGTTTTAAAACCCTTGGTAATGCTTCCATAAGCCTATGGCTCAAGAAAACTAAAATAGGTCAAATTATTCTTGAAATAACTTCTGAGTTCTGGCTTATTTTGCACAATAGTGACGAGCTTAAGAAAATTGTAACTTCTGACCTGAGAAAGCTGTTGGGAGCGGAGGGGGAGCCCACATTCGTCAACCATTTCTTCTGGAGTAAAGGCTTTCCTTTATATGGTCATAACTATGGGTCAGTTCTTGAAGCAATTGACAAAATGGAAAAAGATCTCCCTGGATTTTTCTATGCTGGTAACCACAGAGGTGGACTCTCAGTTGGTAGAGCAATTGCCTCGGGTTGCAAAGCAGCTGATCTTGTAATTTCCTACCTAAACAATGCTTCAGACAACAGTGGTGTCTGA

Protein sequence

>MsG0780037413.01.T01

MCLASLFHKPNLRFFCQTPFPQFSSCLDEEKAIPGNVILGQNAGSAEAHIPSFCGSVKRVAVVGAGTRLQLEVLVLQIVTVTNVTVFEAEGRAGGRLRTVSRDGLVWDEGANTMTENEIEVKGLIDALGLHEKQQYPLSQHKRYIVKNGTPVLVCLANAPFFPRAMEFGEKTLTDTLCKELGKDDIKLNAKVLTLAYSHDGSSPSQNWSITCASNRKTQDVDAVIMTVTYLPLSVLITTFKKENVKRPLEGFGVLVPSKEQQNGFKTLGNASISLWLKKTKIGQIILEITSEFWLILHNSDELKKIVTSDLRKLLGAEGEPTFVNHFFWSKGFPLYGHNYGSVLEAIDKMEKDLPGFFYAGNHRGGLSVGRAIASGCKAADLVISYLNNASDNSGV*