AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038147.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038147.01.T01 MTR_7g451050 75.676 185 10 2 24 208 1 150 1.53e-90 266
MsG0780038147.01.T01 MTR_7g451050 75.676 185 10 2 24 208 1 150 9.51e-90 265
MsG0780038147.01.T01 MTR_7g451050 82.468 154 5 1 55 208 1 132 1.86e-84 249
MsG0780038147.01.T01 MTR_7g451050 82.468 154 5 1 55 208 1 132 8.98e-84 249
MsG0780038147.01.T01 MTR_8g070510 31.618 136 70 2 72 206 14 127 2.07e-16 75.5
MsG0780038147.01.T01 MTR_8g070510 31.618 136 70 2 72 206 18 131 2.13e-16 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038147.01.T01 AT3G24110 42.466 146 60 2 60 203 4 127 4.10e-32 117
MsG0780038147.01.T01 AT3G24110 42.466 146 60 2 60 203 7 130 4.46e-32 117
MsG0780038147.01.T01 AT4G26470 32.680 153 80 2 55 206 1 131 4.00e-18 80.5
MsG0780038147.01.T01 AT4G26470 35.294 136 65 2 72 206 18 131 7.11e-18 79.3
MsG0780038147.01.T01 AT4G26470 32.680 153 80 2 55 206 64 194 1.13e-17 80.5

Find 30 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGTCTTTGCCTATAAAA+TGG 0.154965 7:-41168415 MsG0780038147.01.T01:CDS
CTGGACCGCGATGAGATTTC+TGG 0.203147 7:-41167638 MsG0780038147.01.T01:CDS
ACTATCAATTGATTTCAATT+TGG 0.248361 7:+41168290 None:intergenic
AGAGGAATGTTTGAACAATA+TGG 0.249474 7:-41168222 MsG0780038147.01.T01:CDS
GAAATAAGAAGAAATAAATT+TGG 0.278339 7:-41168318 MsG0780038147.01.T01:CDS
TGTGCAAACATCTATGAAAA+AGG 0.284647 7:+41169243 None:intergenic
TTTCAGTTCATGAGACTCTA+TGG 0.298588 7:+41167856 None:intergenic
CTCACAGATTTCTTCGTACT+TGG 0.313102 7:+41169177 None:intergenic
GTTTACTAAGAAGGAATGTT+TGG 0.348625 7:+41168185 None:intergenic
TTGAGTCTCTCCTTGAACAT+AGG 0.393777 7:+41168252 None:intergenic
CAAGTCTTTGCCTATAAAAT+GGG 0.396944 7:-41168414 MsG0780038147.01.T01:CDS
TATGTTGTTCCCTATGTTCA+AGG 0.416669 7:-41168262 MsG0780038147.01.T01:CDS
CAGAGGATAAAGGTTCTGTT+AGG 0.421057 7:+41167702 None:intergenic
GTTCTGTTAGGATATGAATA+AGG 0.422161 7:+41167714 None:intergenic
AATACATTATCAGAGGATAA+AGG 0.437787 7:+41167692 None:intergenic
ATATTCTCAATCTCATTCTC+TGG 0.438447 7:+41167803 None:intergenic
GAGAGACTCAAAACTTTAAG+AGG 0.440529 7:-41168240 MsG0780038147.01.T01:CDS
TTTCAGTACTGTGATGTTGA+TGG 0.444679 7:-41167779 MsG0780038147.01.T01:CDS
TGAGTCTCTCCTTGAACATA+GGG 0.475905 7:+41168253 None:intergenic
TGGACCGCGATGAGATTTCT+GGG 0.477115 7:-41167637 MsG0780038147.01.T01:CDS
AAAATGAGTGTTTACTAAGA+AGG 0.484132 7:+41168176 None:intergenic
GCGATGAGATTTCTGGGCCG+TGG 0.548276 7:-41167631 MsG0780038147.01.T01:CDS
GCGAATGGACATGAAGTTGT+CGG 0.557666 7:-41170713 None:intergenic
TTAGGATATGAATAAGGCAT+AGG 0.583687 7:+41167720 None:intergenic
CTGTGATGTTGATGGAAGCA+AGG 0.607148 7:-41167771 MsG0780038147.01.T01:CDS
AATAAAGAATACATTATCAG+AGG 0.622495 7:+41167685 None:intergenic
TGTGATGTTGATGGAAGCAA+GGG 0.639504 7:-41167770 MsG0780038147.01.T01:CDS
CGATTGAGCTAATTGAACCA+CGG 0.697842 7:+41167614 None:intergenic
ACGGCCCAGAAATCTCATCG+CGG 0.809216 7:+41167633 None:intergenic
GTGATGTTGATGGAAGCAAG+GGG 0.817481 7:-41167769 MsG0780038147.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATCAATGAAAATGATTT+AGG - Chr7:41168258-41168277 MsG0780038147.01.T01:CDS 15.0%
!! GAAATAAGAAGAAATAAATT+TGG - Chr7:41170013-41170032 MsG0780038147.01.T01:intron 15.0%
!!! ACGTATTTTGTTAATAATTT+TGG - Chr7:41170247-41170266 MsG0780038147.01.T01:intron 15.0%
!!! GAATAATTTCATTTTGAAAA+CGG + Chr7:41169789-41169808 None:intergenic 15.0%
!!! GTGTAACTTTTATAAAATTA+CGG - Chr7:41168552-41168571 MsG0780038147.01.T01:intron 15.0%
!!! TTGTAATTTTGATATTTTCA+AGG + Chr7:41170215-41170234 None:intergenic 15.0%
!!! TTTTTCTTTAAAAACTTCTA+AGG - Chr7:41169059-41169078 MsG0780038147.01.T01:intron 15.0%
!! AAAAGATTAAACAAGAGAAA+AGG + Chr7:41169205-41169224 None:intergenic 20.0%
!! AATAAAGAATACATTATCAG+AGG + Chr7:41170649-41170668 None:intergenic 20.0%
!! ACAATATATATGATGTTTGT+TGG - Chr7:41169348-41169367 MsG0780038147.01.T01:intron 20.0%
!! AGATATTAAAACTAGTAGAA+AGG + Chr7:41168238-41168257 None:intergenic 20.0%
!! AGTATAAAAACAAAGTATAG+TGG + Chr7:41169028-41169047 None:intergenic 20.0%
!! ATTAGCTGTTAGAATTTAAT+CGG - Chr7:41168131-41168150 MsG0780038147.01.T01:intron 20.0%
!! TTAGAGTAATAATCAAACAA+TGG + Chr7:41169766-41169785 None:intergenic 20.0%
!!! ACTATCAATTGATTTCAATT+TGG + Chr7:41170044-41170063 None:intergenic 20.0%
!!! CTTATTCTTTATTTGTTTGA+TGG + Chr7:41168876-41168895 None:intergenic 20.0%
!!! TAACTTTTATAAAATTACGG+TGG - Chr7:41168555-41168574 MsG0780038147.01.T01:intron 20.0%
!!! TAGAGATTTTGAAAAGAAAA+GGG + Chr7:41169647-41169666 None:intergenic 20.0%
!!! TTAGAGATTTTGAAAAGAAA+AGG + Chr7:41169648-41169667 None:intergenic 20.0%
!!! TTTTGCTTAGCTAAAAAAAA+AGG + Chr7:41168661-41168680 None:intergenic 20.0%
! AAAATGAGTGTTTACTAAGA+AGG + Chr7:41170158-41170177 None:intergenic 25.0%
! AAACTAACTTCGATATCATT+TGG + Chr7:41167827-41167846 None:intergenic 25.0%
! AACAACACTCAAAGAAAAAA+TGG - Chr7:41168985-41169004 MsG0780038147.01.T01:intron 25.0%
! AACCTTACTTTACTACAATT+CGG - Chr7:41169443-41169462 MsG0780038147.01.T01:intron 25.0%
! AATAAGCTAAAACCAAAAGA+AGG + Chr7:41168846-41168865 None:intergenic 25.0%
! AATACATTATCAGAGGATAA+AGG + Chr7:41170642-41170661 None:intergenic 25.0%
! ACATTTACGGACAAAAAATA+AGG - Chr7:41170348-41170367 MsG0780038147.01.T01:intron 25.0%
! ATCATAGATTAACAGTTGAT+GGG + Chr7:41168597-41168616 None:intergenic 25.0%
! ATGAATATGTTGAAAGAATC+TGG + Chr7:41167960-41167979 None:intergenic 25.0%
! ATTGTAGTAAAGTAAGGTTA+AGG + Chr7:41169442-41169461 None:intergenic 25.0%
! CAATATTTAAAAAACCGAAC+CGG + Chr7:41169558-41169577 None:intergenic 25.0%
! CTACACATATGTTATTAGAA+AGG + Chr7:41168294-41168313 None:intergenic 25.0%
! GAAAAAAGAAGAACTCATAT+AGG - Chr7:41168962-41168981 MsG0780038147.01.T01:intron 25.0%
! GATAAAAATTCCTTGTAATG+AGG + Chr7:41169877-41169896 None:intergenic 25.0%
! TAATCTATGATACCAAACAT+AGG - Chr7:41168606-41168625 MsG0780038147.01.T01:intron 25.0%
! TACTTTGATCAATTCATTGT+TGG - Chr7:41168387-41168406 MsG0780038147.01.T01:CDS 25.0%
! TATCATAGATTAACAGTTGA+TGG + Chr7:41168598-41168617 None:intergenic 25.0%
! TCAAGTATATCCAAATTAGA+GGG + Chr7:41168944-41168963 None:intergenic 25.0%
! TCTACTCAACATTTGATATA+GGG + Chr7:41169731-41169750 None:intergenic 25.0%
! TTACAAATCATCTATCAAAG+AGG - Chr7:41168750-41168769 MsG0780038147.01.T01:intron 25.0%
! TTCAAGTATATCCAAATTAG+AGG + Chr7:41168945-41168964 None:intergenic 25.0%
!! ACAACTTTCAACATTGATTA+GGG + Chr7:41169819-41169838 None:intergenic 25.0%
!! GATTGATGAATGTAATTTTC+TGG - Chr7:41168028-41168047 MsG0780038147.01.T01:intron 25.0%
!! GATTTCTATGTTTTCAAAAC+TGG - Chr7:41170674-41170693 MsG0780038147.01.T01:intron 25.0%
!! TTATAGCTTGTACAAAATCA+CGG + Chr7:41168531-41168550 None:intergenic 25.0%
!! TTCTTAGTAAACACTCATTT+TGG - Chr7:41170157-41170176 MsG0780038147.01.T01:intron 25.0%
!!! CAATTTTCTCTAGAAATTCT+CGG + Chr7:41169321-41169340 None:intergenic 25.0%
!!! CTCTTGTTTAATCTTTTTTC+TGG - Chr7:41169208-41169227 MsG0780038147.01.T01:CDS 25.0%
!!! TTCTTTTGGTTTTAGCTTAT+TGG - Chr7:41168845-41168864 MsG0780038147.01.T01:intron 25.0%
!!! TTTTAGCTAAGCAAAAGTTT+AGG - Chr7:41168665-41168684 MsG0780038147.01.T01:intron 25.0%
ACAATCGAGAATGAGTTTAA+GGG - Chr7:41169579-41169598 MsG0780038147.01.T01:intron 30.0%
ACCTTACTTTACTACAATTC+GGG - Chr7:41169444-41169463 MsG0780038147.01.T01:intron 30.0%
AGAGGAATGTTTGAACAATA+TGG - Chr7:41170109-41170128 MsG0780038147.01.T01:intron 30.0%
ATAGGCTCAATATCATAACA+TGG - Chr7:41168624-41168643 MsG0780038147.01.T01:intron 30.0%
ATATTCTCAATCTCATTCTC+TGG + Chr7:41170531-41170550 None:intergenic 30.0%
ATTCCAATTACTATAGCAAG+TGG + Chr7:41168183-41168202 None:intergenic 30.0%
CAAGTCTTTGCCTATAAAAT+GGG - Chr7:41169917-41169936 MsG0780038147.01.T01:intron 30.0%
CGGACAAAAAATAAGGTTTA+CGG - Chr7:41170355-41170374 MsG0780038147.01.T01:intron 30.0%
CTCTACTCAACATTTGATAT+AGG + Chr7:41169732-41169751 None:intergenic 30.0%
GACTTGAGAAAAAAGGAAAA+AGG + Chr7:41169903-41169922 None:intergenic 30.0%
GTACTTGGCATTTATATCTA+TGG + Chr7:41167805-41167824 None:intergenic 30.0%
GTCTGCTTTCATGTATTAAA+GGG - Chr7:41167931-41167950 MsG0780038147.01.T01:intron 30.0%
GTTCTGTTAGGATATGAATA+AGG + Chr7:41170620-41170639 None:intergenic 30.0%
GTTTACTAAGAAGGAATGTT+TGG + Chr7:41170149-41170168 None:intergenic 30.0%
TAAAGGTGAAGATACATTTG+TGG + Chr7:41170304-41170323 None:intergenic 30.0%
TACAACGATGGAAAGAAAAA+AGG + Chr7:41168461-41168480 None:intergenic 30.0%
TATGATATTGAGCCTATGTT+TGG + Chr7:41168621-41168640 None:intergenic 30.0%
TATGTTATTAGAAAGGAGCT+TGG + Chr7:41168287-41168306 None:intergenic 30.0%
TCAAGTCTTTGCCTATAAAA+TGG - Chr7:41169916-41169935 MsG0780038147.01.T01:intron 30.0%
TGCTATAGTAATTGGAATCA+TGG - Chr7:41168185-41168204 MsG0780038147.01.T01:intron 30.0%
TGTCTGCTTTCATGTATTAA+AGG - Chr7:41167930-41167949 MsG0780038147.01.T01:intron 30.0%
TGTGCAAACATCTATGAAAA+AGG + Chr7:41169091-41169110 None:intergenic 30.0%
TGTGCATATTGGAGAATATT+TGG - Chr7:41169243-41169262 MsG0780038147.01.T01:CDS 30.0%
TGTTACCTGAATATGAAGTA+CGG - Chr7:41169274-41169293 MsG0780038147.01.T01:intron 30.0%
TTAGGATATGAATAAGGCAT+AGG + Chr7:41170614-41170633 None:intergenic 30.0%
TTCACCTTTAATGACTACAA+TGG - Chr7:41170314-41170333 MsG0780038147.01.T01:intron 30.0%
TTTCTACCAAAATTAAGACG+TGG + Chr7:41170406-41170425 None:intergenic 30.0%
TTTGATCAATTCATTGTTGG+TGG - Chr7:41168390-41168409 MsG0780038147.01.T01:CDS 30.0%
! AATTACTGCTCCCATTTTAT+AGG + Chr7:41169930-41169949 None:intergenic 30.0%
! CTTTACAACTTTTACAACGA+TGG + Chr7:41168473-41168492 None:intergenic 30.0%
! GACAACTTTCAACATTGATT+AGG + Chr7:41169820-41169839 None:intergenic 30.0%
! GATATCGAAGTTAGTTTCAT+CGG - Chr7:41167830-41167849 MsG0780038147.01.T01:CDS 30.0%
! GTAAAAGTTGTAAAGCATCA+TGG - Chr7:41168478-41168497 MsG0780038147.01.T01:intron 30.0%
! GTGAACTCTTATTTGATTGA+TGG - Chr7:41167871-41167890 MsG0780038147.01.T01:CDS 30.0%
! TATAAGCCACGTCTTAATTT+TGG - Chr7:41170397-41170416 MsG0780038147.01.T01:intron 30.0%
! TGCTTTAAATCAAACGAATC+AGG + Chr7:41169498-41169517 None:intergenic 30.0%
! TTATTTGATTGATGGCAGTT+AGG - Chr7:41167879-41167898 MsG0780038147.01.T01:CDS 30.0%
! TTTTCTTGTACCTCATTACA+AGG - Chr7:41169864-41169883 MsG0780038147.01.T01:intron 30.0%
!! CTTTTGATTACCCTCTAATT+TGG - Chr7:41168931-41168950 MsG0780038147.01.T01:intron 30.0%
!!! CGGTTCGGTTTTTTAAATAT+TGG - Chr7:41169556-41169575 MsG0780038147.01.T01:intron 30.0%
!!! TTACTACAATTCGGGTTTTT+TGG - Chr7:41169452-41169471 MsG0780038147.01.T01:intron 30.0%
AAAAAATGGCATCTCTCCTT+TGG - Chr7:41168999-41169018 MsG0780038147.01.T01:intron 35.0%
AACTACATAGACTAGAGTAG+TGG - Chr7:41168096-41168115 MsG0780038147.01.T01:intron 35.0%
AAGCAAAAGTTTAGGTGAGT+TGG - Chr7:41168673-41168692 MsG0780038147.01.T01:intron 35.0%
AATTGAAACCACGTTCTTGA+GGG - Chr7:41168792-41168811 MsG0780038147.01.T01:intron 35.0%
ACAAAGTGAGAAAAAGAGCT+TGG - Chr7:41169964-41169983 MsG0780038147.01.T01:intron 35.0%
ACCCGAATTGTAGTAAAGTA+AGG + Chr7:41169448-41169467 None:intergenic 35.0%
ACTACATAGACTAGAGTAGT+GGG - Chr7:41168097-41168116 MsG0780038147.01.T01:intron 35.0%
AGCAAAAGTTTAGGTGAGTT+GGG - Chr7:41168674-41168693 MsG0780038147.01.T01:intron 35.0%
AGCTAAAACCAAAAGAAGGT+TGG + Chr7:41168842-41168861 None:intergenic 35.0%
AGGCAAAGACTTGAGAAAAA+AGG + Chr7:41169910-41169929 None:intergenic 35.0%
ATCATCCGTACTTCATATTC+AGG + Chr7:41169282-41169301 None:intergenic 35.0%
CTTCGATATCATTTGGTACT+TGG + Chr7:41167820-41167839 None:intergenic 35.0%
GACAAAGTCTCAGACATTTA+AGG + Chr7:41170184-41170203 None:intergenic 35.0%
GACAATCGAGAATGAGTTTA+AGG - Chr7:41169578-41169597 MsG0780038147.01.T01:intron 35.0%
GAGAGACTCAAAACTTTAAG+AGG - Chr7:41170091-41170110 MsG0780038147.01.T01:intron 35.0%
GCAGTTGAATTATGATTCAG+AGG - Chr7:41169515-41169534 MsG0780038147.01.T01:intron 35.0%
GGCATTTATATCTATGGAAG+AGG + Chr7:41167799-41167818 None:intergenic 35.0%
GGTCTTAATGTTTCAATGTC+CGG - Chr7:41169536-41169555 MsG0780038147.01.T01:intron 35.0%
GTACTATGCAAATGTTCTTG+TGG - Chr7:41168342-41168361 MsG0780038147.01.T01:CDS 35.0%
TAATGTTTCAATGTCCGGTT+CGG - Chr7:41169541-41169560 MsG0780038147.01.T01:intron 35.0%
TATCAAAGAGGTTCTTACCT+TGG - Chr7:41168762-41168781 MsG0780038147.01.T01:intron 35.0%
TATGTTGTTCCCTATGTTCA+AGG - Chr7:41170069-41170088 MsG0780038147.01.T01:intron 35.0%
TTTCAGTACTGTGATGTTGA+TGG - Chr7:41170552-41170571 MsG0780038147.01.T01:intron 35.0%
TTTCAGTTCATGAGACTCTA+TGG + Chr7:41170478-41170497 None:intergenic 35.0%
! AAAGTTGTAAAGCATCATGG+TGG - Chr7:41168481-41168500 MsG0780038147.01.T01:intron 35.0%
! AAGTTGTAAAGCATCATGGT+GGG - Chr7:41168482-41168501 MsG0780038147.01.T01:intron 35.0%
! CAACTAAACCAACCTTCTTT+TGG - Chr7:41168831-41168850 MsG0780038147.01.T01:intron 35.0%
! CTTTAAAAACATGGAATGCG+AGG - Chr7:41167710-41167729 MsG0780038147.01.T01:CDS 35.0%
! TCATGTCTTGTTGTGCATAT+TGG - Chr7:41169232-41169251 MsG0780038147.01.T01:CDS 35.0%
!! ACATTTGTTAGCGCTTTTTG+AGG + Chr7:41168728-41168747 None:intergenic 35.0%
!! AGAGGCACTCTTAATTGAAA+TGG + Chr7:41167781-41167800 None:intergenic 35.0%
!! ATGTTCTGAGATGTGTTGAA+AGG + Chr7:41167677-41167696 None:intergenic 35.0%
!! CAAAAGAAGGTTGGTTTAGT+TGG + Chr7:41168833-41168852 None:intergenic 35.0%
!! CAAAGTATAGTGGATTCCAA+AGG + Chr7:41169018-41169037 None:intergenic 35.0%
!! CATCCACTTGCTATAGTAAT+TGG - Chr7:41168177-41168196 MsG0780038147.01.T01:intron 35.0%
!! GCTTGAAGGCTTTAAAAACA+TGG - Chr7:41167701-41167720 MsG0780038147.01.T01:CDS 35.0%
!!! GTTTTTGAAACCGAGTTGAA+CGG - Chr7:41169402-41169421 MsG0780038147.01.T01:intron 35.0%
ACCAATTGAACCGTTCAACT+CGG + Chr7:41169415-41169434 None:intergenic 40.0%
AGCTTGTACAAAATCACGGT+GGG + Chr7:41168527-41168546 None:intergenic 40.0%
AGGCATTCAGGAACAATTGT+TGG + Chr7:41167657-41167676 None:intergenic 40.0%
ATGAAGTTGTCGGTAATTGG+AGG - Chr7:41167628-41167647 MsG0780038147.01.T01:CDS 40.0%
CAGAGGATAAAGGTTCTGTT+AGG + Chr7:41170632-41170651 None:intergenic 40.0%
CTCACAGATTTCTTCGTACT+TGG + Chr7:41169157-41169176 None:intergenic 40.0%
GAATTGAAACCACGTTCTTG+AGG - Chr7:41168791-41168810 MsG0780038147.01.T01:intron 40.0%
GACATGAAGTTGTCGGTAAT+TGG - Chr7:41167625-41167644 MsG0780038147.01.T01:CDS 40.0%
GCTGCCATTGTAGTCATTAA+AGG + Chr7:41170321-41170340 None:intergenic 40.0%
GTGAGAAAAAGAGCTTGGAA+AGG - Chr7:41169969-41169988 MsG0780038147.01.T01:intron 40.0%
TGAAGTTGTCGGTAATTGGA+GGG - Chr7:41167629-41167648 MsG0780038147.01.T01:CDS 40.0%
TGAGTCTCTCCTTGAACATA+GGG + Chr7:41170081-41170100 None:intergenic 40.0%
TGATGGCAGTTAGGAACTTA+GGG - Chr7:41167888-41167907 MsG0780038147.01.T01:CDS 40.0%
TTGAGTCTCTCCTTGAACAT+AGG + Chr7:41170082-41170101 None:intergenic 40.0%
TTGTTAGCAGAAGACATTCG+AGG + Chr7:41170274-41170293 None:intergenic 40.0%
! GAAGTTAGTTTCATCGGCAA+GGG - Chr7:41167836-41167855 MsG0780038147.01.T01:CDS 40.0%
! TAGCTTGTACAAAATCACGG+TGG + Chr7:41168528-41168547 None:intergenic 40.0%
! TGTGATGTTGATGGAAGCAA+GGG - Chr7:41170561-41170580 MsG0780038147.01.T01:intron 40.0%
! TTGATGGCAGTTAGGAACTT+AGG - Chr7:41167887-41167906 MsG0780038147.01.T01:CDS 40.0%
!! AGATGTGTTGAAAGGCATTC+AGG + Chr7:41167669-41167688 None:intergenic 40.0%
!!! CTACAATTCGGGTTTTTTGG+CGG - Chr7:41169455-41169474 MsG0780038147.01.T01:intron 40.0%
AGAGGTTCTTACCTTGGCAA+CGG - Chr7:41168768-41168787 MsG0780038147.01.T01:intron 45.0%
CATGGCCTACGACAACAATT+GGG - Chr7:41168203-41168222 MsG0780038147.01.T01:CDS 45.0%
CTACGACAACAATTGGGACT+CGG - Chr7:41168209-41168228 MsG0780038147.01.T01:CDS 45.0%
CTCAGAACATGCTTGCTTGA+AGG - Chr7:41167687-41167706 MsG0780038147.01.T01:CDS 45.0%
TCATGGCCTACGACAACAAT+TGG - Chr7:41168202-41168221 MsG0780038147.01.T01:CDS 45.0%
TGGACTTGTGGGAATGAGAA+TGG - Chr7:41168059-41168078 MsG0780038147.01.T01:intron 45.0%
! ACCGAGTTGAACGGTTCAAT+TGG - Chr7:41169411-41169430 MsG0780038147.01.T01:intron 45.0%
! CATAGACTAGAGTAGTGGGA+CGG - Chr7:41168101-41168120 MsG0780038147.01.T01:intron 45.0%
! CGAAGTTAGTTTCATCGGCA+AGG - Chr7:41167835-41167854 MsG0780038147.01.T01:CDS 45.0%
! CTGTGATGTTGATGGAAGCA+AGG - Chr7:41170560-41170579 MsG0780038147.01.T01:intron 45.0%
! GTGATGTTGATGGAAGCAAG+GGG - Chr7:41170562-41170581 MsG0780038147.01.T01:intron 45.0%
! GTTTAGGTGAGTTGGGCATT+TGG - Chr7:41168681-41168700 MsG0780038147.01.T01:intron 45.0%
!! GTAATTTTCTGGCAGTCTCG+TGG - Chr7:41168039-41168058 MsG0780038147.01.T01:intron 45.0%
!!! GTTTTTTGGCGGTGCTTTTG+CGG - Chr7:41169466-41169485 MsG0780038147.01.T01:intron 45.0%
CGAGTCCCAATTGTTGTCGT+AGG + Chr7:41168211-41168230 None:intergenic 50.0%
GAGGTTCTTACCTTGGCAAC+GGG - Chr7:41168769-41168788 MsG0780038147.01.T01:intron 50.0%
GGCAGCGTCTCACACATTTA+CGG - Chr7:41170335-41170354 MsG0780038147.01.T01:intron 50.0%
GGGACTTCTTCTTGTCATGC+TGG - Chr7:41169599-41169618 MsG0780038147.01.T01:intron 50.0%
GGTTTCAATTCCCGTTGCCA+AGG + Chr7:41168782-41168801 None:intergenic 50.0%
TGGACCGCGATGAGATTTCT+GGG - Chr7:41170694-41170713 MsG0780038147.01.T01:intron 50.0%
TTGACTCACCCTCAAGAACG+TGG + Chr7:41168803-41168822 None:intergenic 50.0%
!! CAGTTGATGGGCCAGAATCA+CGG + Chr7:41168585-41168604 None:intergenic 50.0%
ACGGCCCAGAAATCTCATCG+CGG + Chr7:41170701-41170720 None:intergenic 55.0%
ACGGTGGATCACCGTGATTC+TGG - Chr7:41168571-41168590 MsG0780038147.01.T01:intron 55.0%
CTGGACCGCGATGAGATTTC+TGG - Chr7:41170693-41170712 MsG0780038147.01.T01:intron 55.0%
TGGCAGTCTCGTGGACTTGT+GGG - Chr7:41168048-41168067 MsG0780038147.01.T01:intron 55.0%
! AGTTGGGCATTTGGCTCACC+AGG - Chr7:41168690-41168709 MsG0780038147.01.T01:intron 55.0%
! GTTGGGCATTTGGCTCACCA+GGG - Chr7:41168691-41168710 MsG0780038147.01.T01:intron 55.0%
!! AGCATCATGGTGGGTGTTCC+AGG - Chr7:41168491-41168510 MsG0780038147.01.T01:intron 55.0%
!!! GCGCTTTTTGAGGTCTGTCC+TGG + Chr7:41168718-41168737 None:intergenic 55.0%
ACGGTGGGTCATCGTGATCC+TGG + Chr7:41168512-41168531 None:intergenic 60.0%
CTGGCAGTCTCGTGGACTTG+TGG - Chr7:41168047-41168066 MsG0780038147.01.T01:intron 60.0%
TTGAGGTCTGTCCTGGACCC+TGG + Chr7:41168711-41168730 None:intergenic 60.0%
! CATTTGGCTCACCAGGGTCC+AGG - Chr7:41168697-41168716 MsG0780038147.01.T01:intron 60.0%
! GCGATGAGATTTCTGGGCCG+TGG - Chr7:41170700-41170719 MsG0780038147.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 41167622 41170731 41167622 ID=MsG0780038147.01;Name=MsG0780038147.01
Chr7 mRNA 41167622 41170731 41167622 ID=MsG0780038147.01.T01;Parent=MsG0780038147.01;Name=MsG0780038147.01.T01;_AED=0.50;_eAED=0.61;_QI=0|0|0|1|0|0|4|0|232
Chr7 exon 41170714 41170731 41170714 ID=MsG0780038147.01.T01:exon:8277;Parent=MsG0780038147.01.T01
Chr7 exon 41169178 41169272 41169178 ID=MsG0780038147.01.T01:exon:8276;Parent=MsG0780038147.01.T01
Chr7 exon 41168191 41168467 41168191 ID=MsG0780038147.01.T01:exon:8275;Parent=MsG0780038147.01.T01
Chr7 exon 41167622 41167930 41167622 ID=MsG0780038147.01.T01:exon:8274;Parent=MsG0780038147.01.T01
Chr7 CDS 41170714 41170731 41170714 ID=MsG0780038147.01.T01:cds;Parent=MsG0780038147.01.T01
Chr7 CDS 41169178 41169272 41169178 ID=MsG0780038147.01.T01:cds;Parent=MsG0780038147.01.T01
Chr7 CDS 41168191 41168467 41168191 ID=MsG0780038147.01.T01:cds;Parent=MsG0780038147.01.T01
Chr7 CDS 41167622 41167930 41167622 ID=MsG0780038147.01.T01:cds;Parent=MsG0780038147.01.T01
Gene Sequence

>MsG0780038147.01.T01

ATGGACATGAAGTTGTCGGTTCTTTCCTTTTTCATAGATGTTTGCACATATATAGTCTACAACTTGTTTATGACTCTAAAAATAGCTGTAGCCAAGTACGAAGAAATCTGTGAGAATTTTTATCTTACCTTTTTCCTTTTTTCTCAAGTCTTTGCCTATAAAATGGGAGCAGTAATTTGTTGCATCAGTGAACAAAGTGAGAAAAAGAGCTTGGAAAGGAAGCTTGAAAAGAAAATAGCTGAAATAAGAAGAAATAAATTTGGACAAACCAAATTGAAATCAATTGATAGTATAGTTATGTTGTTCCCTATGTTCAAGGAGAGACTCAAAACTTTAAGAGGAATGTTTGAACAATATGGTAAGTTTCACTATTCCAAACATTCCTTCTTAAAAACTAACTTGTTTTATGTTGTATCTTTCATAGATGAAGACTCTAATGAATCCATAGAGTCTCATGAACTGAAAACTTTCTTAGAAGATTTGCAACTTCATCTTCCAGAGAATGAGATTGAGAATATTTTTCAGTACTGTGATGTTGATGGAAGCAAGGGGATACAGTTCAATGAATTTATTGTTCTCCTATGCCTTATTCATATCCTAACAGAACCTTTATCCTCTGATAATGTATTCTTTATTAACTTGATTTCTATGTTTTCAAAACTGGACCGCGATGAGATTTCTGGGCCGTGGTTCAATTAG
Protein sequence

>MsG0780038147.01.T01

MDMKLSVLSFFIDVCTYIVYNLFMTLKIAVAKYEEICENFYLTFFLFSQVFAYKMGAVICCISEQSEKKSLERKLEKKIAEIRRNKFGQTKLKSIDSIVMLFPMFKERLKTLRGMFEQYGKFHYSKHSFLKTNLFYVVSFIDEDSNESIESHELKTFLEDLQLHLPENEIENIFQYCDVDGSKGIQFNEFIVLLCLIHILTEPLSSDNVFFINLISMFSKLDRDEISGPWFN*