AlfalfaGEDB | MsG0780040006.01

M. sativa cultivar ZhongmuNo.1 / MsG0780040006.01

KEGG: K16675
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040006.01.T01	XP_003624454.1	71.429	441	97	7	1	420	1	433	0	582

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040006.01.T01	Q0WQK2	55.069	434	159	12	1	407	1	425	9.35E-144	419

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040006.01.T01	G7KW72	71.429	441	97	7	1	420	1	433	0.0	582

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
MsG0180000280.01	MsG0780040006.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040006.01.T01	MTR_7g083480	71.429	441	97	7	1	420	1	433	0.0	582
MsG0780040006.01.T01	MTR_6g033315	58.864	440	146	11	1	414	1	431	5.21e-157	451
MsG0780040006.01.T01	MTR_3g098840	36.404	445	226	10	5	416	4	424	5.38e-71	230
MsG0780040006.01.T01	MTR_1g098390	37.292	421	200	12	20	397	5	404	1.16e-66	218
MsG0780040006.01.T01	MTR_6g038020	35.904	415	210	11	23	397	9	407	1.64e-57	194
MsG0780040006.01.T01	MTR_6g038020	36.341	410	205	11	28	397	11	404	2.14e-57	194
MsG0780040006.01.T01	MTR_7g088350	35.650	331	189	9	20	330	25	351	7.50e-48	170
MsG0780040006.01.T01	MTR_7g088360	34.848	330	186	11	20	328	29	350	1.21e-42	155

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040006.01.T01	AT3G26935	55.069	434	159	12	1	407	1	425	9.53e-145	419
MsG0780040006.01.T01	AT5G41060	50.355	423	173	11	1	401	1	408	1.24e-119	354
MsG0780040006.01.T01	AT5G41060	48.601	393	166	10	31	401	15	393	8.31e-105	316
MsG0780040006.01.T01	AT5G41060	44.507	355	161	10	69	401	1	341	1.29e-79	249
MsG0780040006.01.T01	AT5G41060	44.507	355	161	10	69	401	1	341	1.29e-79	249
MsG0780040006.01.T01	AT3G48760	39.070	430	229	9	19	420	27	451	4.05e-79	253
MsG0780040006.01.T01	AT4G24630	31.963	438	181	12	20	392	4	389	3.25e-56	191
MsG0780040006.01.T01	AT5G50020	32.367	414	212	10	20	390	4	392	2.99e-53	183
MsG0780040006.01.T01	AT5G50020	32.367	414	212	10	20	390	34	422	9.57e-53	182
MsG0780040006.01.T01	AT3G56930	36.176	340	177	11	20	328	10	340	1.41e-46	167

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Find 176 sgRNAs with CRISPR-Local

Find 499 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCATCCAATAGTTTAC+TGG	0.356292	7:+71864812	None:intergenic
AAACCATCGGATCCTGAACC+CGG	0.526272	7:+71865752	None:intergenic
AAAGAACAAATTCAGGGCAA+TGG	0.567208	7:-71860805	MsG0780040006.01.T01:CDS
AAAGTTTCCGGCGAAGTTGA+TGG	0.427560	7:+71865951	None:intergenic
AAATGGGAAGGAAAGCAGTA+TGG	0.318682	7:-71860698	MsG0780040006.01.T01:CDS
AACCAAAGTTTGGGAAAATC+TGG	0.287862	7:-71860732	MsG0780040006.01.T01:CDS
AACTCTGAGCGGTATGTACG+TGG	0.653871	7:-71865798	MsG0780040006.01.T01:exon
AACTTACCAGCCCAATACAC+TGG	0.588975	7:+71861387	None:intergenic
AAGTGTTAGCCTTGGCAGCC+AGG	0.437690	7:-71860494	MsG0780040006.01.T01:CDS
AAGTTTCCGGCGAAGTTGAT+GGG	0.514484	7:+71865952	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCCAAAACATAACTGAGA+TGG	+	Chr7:71861028-71861047	None:intergenic	30.0%
ACACAAACCATTTGACTATA+AGG	+	Chr7:71862837-71862856	None:intergenic	30.0%
ACCACAAAGAGAGAAAAAAA+AGG	-	Chr7:71859938-71859957	MsG0780040006.01.T01:three_prime_UTR	30.0%
ACTAATCAGGTATAAATGGA+AGG	+	Chr7:71865002-71865021	None:intergenic	30.0%
AGAAAATGAAATCTTGTTGG+CGG	+	Chr7:71863519-71863538	None:intergenic	30.0%
AGAATTGCAAAATCTTCAAG+TGG	+	Chr7:71863140-71863159	None:intergenic	30.0%
AGAGGAAACAAATATTTGGA+AGG	-	Chr7:71864899-71864918	MsG0780040006.01.T01:CDS	30.0%
AGATAATTTGGGAGTCAATT+AGG	+	Chr7:71862747-71862766	None:intergenic	30.0%
AGGATATATGAACCAAAGTT+TGG	-	Chr7:71865290-71865309	MsG0780040006.01.T01:intron	30.0%
AGTCAAGATATGATTCTGAT+AGG	-	Chr7:71862613-71862632	MsG0780040006.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	71859928	71866126	71859928	ID=MsG0780040006.01;Name=MsG0780040006.01
Chr7	mRNA	71859928	71866126	71859928	ID=MsG0780040006.01.T01;Parent=MsG0780040006.01;Name=MsG0780040006.01.T01;_AED=0.34;_eAED=0.35;_QI=319\|0.6\|0.66\|1\|0.6\|0.5\|6\|506\|420
Chr7	exon	71859928	71860934	71859928	ID=MsG0780040006.01.T01:exon:14074;Parent=MsG0780040006.01.T01
Chr7	exon	71861024	71861170	71861024	ID=MsG0780040006.01.T01:exon:14073;Parent=MsG0780040006.01.T01
Chr7	exon	71861266	71861314	71861266	ID=MsG0780040006.01.T01:exon:14072;Parent=MsG0780040006.01.T01
Chr7	exon	71861394	71861689	71861394	ID=MsG0780040006.01.T01:exon:14071;Parent=MsG0780040006.01.T01
Chr7	exon	71864758	71864940	71864758	ID=MsG0780040006.01.T01:exon:14070;Parent=MsG0780040006.01.T01
Chr7	exon	71865721	71866126	71865721	ID=MsG0780040006.01.T01:exon:14069;Parent=MsG0780040006.01.T01
Chr7	five_prime_UTR	71865808	71866126	71865808	ID=MsG0780040006.01.T01:five_prime_utr;Parent=MsG0780040006.01.T01
Chr7	CDS	71865721	71865807	71865721	ID=MsG0780040006.01.T01:cds;Parent=MsG0780040006.01.T01
Chr7	CDS	71864758	71864940	71864758	ID=MsG0780040006.01.T01:cds;Parent=MsG0780040006.01.T01
Chr7	CDS	71861394	71861689	71861394	ID=MsG0780040006.01.T01:cds;Parent=MsG0780040006.01.T01
Chr7	CDS	71861266	71861314	71861266	ID=MsG0780040006.01.T01:cds;Parent=MsG0780040006.01.T01
Chr7	CDS	71861024	71861170	71861024	ID=MsG0780040006.01.T01:cds;Parent=MsG0780040006.01.T01
Chr7	CDS	71860434	71860934	71860434	ID=MsG0780040006.01.T01:cds;Parent=MsG0780040006.01.T01
Chr7	three_prime_UTR	71859928	71860433	71859928	ID=MsG0780040006.01.T01:three_prime_utr;Parent=MsG0780040006.01.T01

Gene Sequence

>MsG0780040006.01.T01

ATGTACGTGGTGCCTCCGCCTCAACGATCTGATCCGGGTTCAGGATCCGATGGTTTGCGGGTTTATCAAGCATGGAAAGGAAGCAATAAATTTTTTCTTCAGGGTAGGTTCATATTTGGACCAGATGTGAGATCATTGGGGCTTACAATTTTACTCATTGTTGCTCCTGTCGCAGTTTTTTGTGTCTTTGTTGCCAGTAAACTATTGGATGATTTTTCTGACCATTGGGGGGTATCCATAATGGCTGTTGCAGTTATTTTCACAATTTATGACTTGGTTCTTCTTTTGTTAACATCTGGTCGAGATCCTGGCATAATACCACGCAACGCACACCCTCCTGAACCAGAAGGTTCGATAGTAATACAGATGTCGGTGCCGGTCAGACTCCTCAATTGCGGTTGCCACGGATTAAGGAGGTTGAGGTCAATGGCGTTGTTGTCAAGGTCAAGTATTGTGATACTTGCATGCTTTATAGGCCTCCTCGATGCTCACACTGCTCAATCTGTAATAACTGTGTGGAACGGTTTGATCATCACTGTCCATGGGTTGGCCAGTGTATTGGGCTGTTCAAGACACTCTTGGATACTTGATATGTATGTTAATGCTTGGACAATTAAAAATTATGGACGCAGAGGAAACAAATATTTGGAAGGCAATGATCAAAACCCCAGCCTCCATAGTTTTAATAATTTACACCTTCATATCAATGTGGTTTGTGGTGGCCTTACTGCCTTCCATTTATACCTGATTAGTACAAATCAGACTACTTATGAGAACTTCAGATACCGATATGATCGACGAGCAAACCCATACAACAAAGGAGTGTTGAATAATTTCAAAGAGATATTCTGCATCAGCATAGCCCCCTCAAAGAACAAATTCAGGGCAATGGTGCCAAATGAACCGGCATTACCTGCTCGATCAGTGAGTGGAGGATATATGAACCAAAGTTTGGGAAAATCTGGGGACGACATAGAAATGGGAAGGAAAGCAGTATGGGAGATGAATGCCGGAATGGATGAATCGGATAGTCAATTAAACAATGATCGTGTGACTATAAAAGATGGCGAGTTATCTTCTGAAATTAGGACGACAGTAGATGAAGCAGTTGACCGTGTTGGAATTCATCCTAGGCGATCTAGCTGGGGAAGAAAAAGTGGAAGCTGGGAAATGTCTCCCGAAGTGTTAGCCTTGGCAGCCAGGGTTGGGGAGCAAAATCGTGCCGGTGAAGGTAACAGTAGTAGTACGCGAGATCAGTCTTAA

Protein sequence

>MsG0780040006.01.T01

MYVVPPPQRSDPGSGSDGLRVYQAWKGSNKFFLQGRFIFGPDVRSLGLTILLIVAPVAVFCVFVASKLLDDFSDHWGVSIMAVAVIFTIYDLVLLLLTSGRDPGIIPRNAHPPEPEGSIVIQMSVPVRLLNCGCHGLRRLRSMALLSRSSIVILACFIGLLDAHTAQSVITVWNGLIITVHGLASVLGCSRHSWILDMYVNAWTIKNYGRRGNKYLEGNDQNPSLHSFNNLHLHINVVCGGLTAFHLYLISTNQTTYENFRYRYDRRANPYNKGVLNNFKEIFCISIAPSKNKFRAMVPNEPALPARSVSGGYMNQSLGKSGDDIEMGRKAVWEMNAGMDESDSQLNNDRVTIKDGELSSEIRTTVDEAVDRVGIHPRRSSWGRKSGSWEMSPEVLALAARVGEQNRAGEGNSSSTRDQS*