AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040439.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040439.01.T01 MTR_7g089910 68.224 535 110 10 5 506 3 510 0.0 689
MsG0780040439.01.T01 MTR_7g089920 83.796 432 42 6 1 427 1 409 0.0 671
MsG0780040439.01.T01 MTR_4g037690 49.885 433 175 10 5 429 3 401 4.68e-131 389
MsG0780040439.01.T01 MTR_1g094620 32.862 566 270 13 13 504 8 537 7.90e-86 275
MsG0780040439.01.T01 MTR_1g094620 32.635 573 269 14 13 504 8 544 4.56e-85 273
MsG0780040439.01.T01 MTR_7g062430 32.206 562 285 12 11 502 4 539 5.61e-79 257
MsG0780040439.01.T01 MTR_1g050328 36.526 449 233 12 8 430 2 424 9.09e-76 245
MsG0780040439.01.T01 MTR_8g467180 33.661 407 206 5 142 504 19 405 6.29e-61 206
MsG0780040439.01.T01 MTR_7g062410 34.406 404 204 8 143 502 36 422 4.56e-60 204
MsG0780040439.01.T01 MTR_7g010750 33.012 415 198 9 144 505 42 429 8.56e-57 195
MsG0780040439.01.T01 MTR_8g467190 31.695 407 214 5 142 504 18 404 1.14e-56 194
MsG0780040439.01.T01 MTR_7g010790 32.927 410 205 8 144 505 43 430 1.25e-56 195
MsG0780040439.01.T01 MTR_3g033730 34.152 407 204 7 144 505 43 430 4.01e-55 191
MsG0780040439.01.T01 MTR_8g467070 38.699 292 156 3 142 430 19 290 1.15e-53 186
MsG0780040439.01.T01 MTR_3g465510 28.571 434 243 9 118 505 18 430 2.65e-50 178
MsG0780040439.01.T01 MTR_8g465310 30.831 373 187 4 142 467 18 366 5.96e-50 176
MsG0780040439.01.T01 MTR_3g465440 29.500 400 215 8 147 499 52 431 4.09e-44 167
MsG0780040439.01.T01 MTR_3g084960 28.193 415 221 9 144 505 79 469 1.72e-36 141
MsG0780040439.01.T01 MTR_7g089905 92.424 66 5 0 441 506 46 111 7.52e-31 115
MsG0780040439.01.T01 MTR_2g067090 36.449 107 61 1 226 332 1 100 6.96e-13 69.7
MsG0780040439.01.T01 MTR_4g133495 38.000 100 55 1 226 325 1 93 3.24e-12 67.4
MsG0780040439.01.T01 MTR_4g133340 38.000 100 55 1 226 325 1 93 3.24e-12 67.4
MsG0780040439.01.T01 MTR_1g050325 41.026 78 42 1 426 503 50 123 9.11e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040439.01.T01 AT2G41190 43.409 569 223 16 1 505 1 534 1.43e-134 400
MsG0780040439.01.T01 AT2G41190 45.089 448 189 13 1 426 1 413 6.28e-112 341
MsG0780040439.01.T01 AT2G39130 33.216 569 285 11 9 505 2 547 1.82e-93 295
MsG0780040439.01.T01 AT2G39130 33.216 569 285 11 9 505 2 547 1.82e-93 295
MsG0780040439.01.T01 AT5G02180 33.019 530 271 9 33 505 45 547 5.60e-83 268
MsG0780040439.01.T01 AT5G02180 33.019 530 271 9 33 505 45 547 5.60e-83 268
MsG0780040439.01.T01 AT5G02170 32.353 544 293 11 12 503 2 522 2.15e-82 265
MsG0780040439.01.T01 AT2G39130 33.974 468 256 10 9 446 2 446 5.44e-79 256
MsG0780040439.01.T01 AT3G09340 32.528 538 293 10 18 503 1 520 4.89e-76 249
MsG0780040439.01.T01 AT3G09330 31.194 561 279 11 10 505 4 522 1.67e-72 239
MsG0780040439.01.T01 AT3G54830 32.941 425 238 8 33 430 16 420 3.60e-71 236
MsG0780040439.01.T01 AT3G54830 32.941 425 238 8 33 430 16 420 3.60e-71 236
MsG0780040439.01.T01 AT5G02170 30.174 517 257 11 12 476 2 466 1.89e-68 227
MsG0780040439.01.T01 AT5G15240 32.843 408 209 9 144 505 34 422 1.55e-55 192
MsG0780040439.01.T01 AT3G28960 31.762 403 215 6 144 503 17 402 1.86e-55 191
MsG0780040439.01.T01 AT3G28960 31.762 403 215 6 144 503 17 402 1.86e-55 191
MsG0780040439.01.T01 AT3G28960 31.762 403 215 6 144 503 17 402 1.86e-55 191
MsG0780040439.01.T01 AT3G28960 31.762 403 215 6 144 503 17 402 1.86e-55 191
MsG0780040439.01.T01 AT3G28960 30.347 346 181 6 201 503 5 333 5.88e-40 147
MsG0780040439.01.T01 AT5G15240 32.277 347 170 9 205 505 9 336 8.31e-39 144
MsG0780040439.01.T01 AT5G16740 27.941 408 212 12 144 498 34 412 5.97e-33 130
MsG0780040439.01.T01 AT5G15240 43.956 91 51 0 144 234 34 124 3.89e-18 85.9

Find 120 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGCATTTATTTGCAATTT+TGG 0.076512 7:+77573968 MsG0780040439.01.T01:CDS
ACCATAGATCCATGATTATT+TGG 0.167087 7:+77577337 MsG0780040439.01.T01:three_prime_UTR
CTTAGAACTGATCCAATATT+TGG 0.197588 7:-77571990 None:intergenic
TCCTGGAACATCCTTGCATT+GGG 0.235294 7:+77573926 MsG0780040439.01.T01:CDS
ATTGATTGCACTGTCGAAAA+TGG 0.244568 7:+77577263 MsG0780040439.01.T01:three_prime_UTR
AACGCAGCTTCTCCAATATC+TGG 0.246137 7:-77572808 None:intergenic
GTTCCTGTCACTGTTGTTGC+TGG 0.286572 7:-77571661 None:intergenic
CAAATATTGGATCAGTTCTA+AGG 0.287222 7:+77571991 MsG0780040439.01.T01:CDS
AACCTTTCTGGTCTGTTTCC+TGG 0.292599 7:+77573909 MsG0780040439.01.T01:CDS
ATGGAAGGCGATAACCTTTC+TGG 0.296002 7:+77573897 MsG0780040439.01.T01:intron
TGTTGAGAAGTGAAAGATTC+AGG 0.310172 7:-77571819 None:intergenic
ACCAAATAATCATGGATCTA+TGG 0.311176 7:-77577338 None:intergenic
TTATTATTCTTCCTACTGTT+TGG 0.311763 7:+77573997 MsG0780040439.01.T01:CDS
TGAAGGATTAATTTATATAT+CGG 0.314652 7:+77577465 MsG0780040439.01.T01:three_prime_UTR
GGGCTAGTGATGGCTTTAAT+TGG 0.315380 7:+77575507 MsG0780040439.01.T01:CDS
TGGGCAAGTTTGCTGGTAAT+TGG 0.322302 7:+77572706 MsG0780040439.01.T01:CDS
ATCATTAGCTACCCAGATAT+TGG 0.327623 7:+77572796 MsG0780040439.01.T01:CDS
CCAGCTTGCTTGACAGTATC+AGG 0.328130 7:-77572682 None:intergenic
GTTTAGAGAACCTGAGAGAT+AGG 0.328866 7:-77574042 None:intergenic
AACATGTCTGTGACATCTTT+TGG 0.334856 7:+77575474 MsG0780040439.01.T01:CDS
ATTGCGGCTGCACCAAATAT+TGG 0.335676 7:+77571978 MsG0780040439.01.T01:CDS
GAAGCTGCGTTTGGAAAATA+TGG 0.341207 7:+77572820 MsG0780040439.01.T01:CDS
AGTGGTGTTCCATTTGCTTT+TGG 0.341349 7:+77574284 MsG0780040439.01.T01:CDS
TCTTCCTACTGTTTGGTTGA+AGG 0.345243 7:+77574004 MsG0780040439.01.T01:CDS
ACACTGCTCCATTGGTAAAC+TGG 0.345643 7:+77574261 MsG0780040439.01.T01:CDS
CTTAATGTGTTGGCTGGAGT+TGG 0.350793 7:+77572646 MsG0780040439.01.T01:CDS
TTCTGAAAATTGTGGGGAAA+AGG 0.355690 7:+77576344 MsG0780040439.01.T01:CDS
GAAGAATTGCCTATTGGTTA+TGG 0.355857 7:+77572155 MsG0780040439.01.T01:CDS
GCTGCGGGATTTCTTATGTT+TGG 0.361933 7:+77574704 MsG0780040439.01.T01:CDS
CAGATGGTGTAGAGTAATAA+AGG 0.362396 7:-77573821 None:intergenic
AGCTGGGTGGGCAAGTTTGC+TGG 0.375195 7:+77572699 MsG0780040439.01.T01:CDS
TTCCTGGAACATCCTTGCAT+TGG 0.385943 7:+77573925 MsG0780040439.01.T01:CDS
ATTCCTGAAGAATTGCCTAT+TGG 0.389840 7:+77572149 MsG0780040439.01.T01:CDS
AGGGGTTGTTGGTACAGCTT+TGG 0.401111 7:+77574187 MsG0780040439.01.T01:CDS
GATATTGGAGAAGCTGCGTT+TGG 0.407226 7:+77572811 MsG0780040439.01.T01:CDS
TTAATGTGTTGGCTGGAGTT+GGG 0.408618 7:+77572647 MsG0780040439.01.T01:CDS
CCCCAATGCAAGGATGTTCC+AGG 0.412169 7:-77573927 None:intergenic
TAACCAATAGGCAATTCTTC+AGG 0.420750 7:-77572152 None:intergenic
TATGGAAGCGTCGGAGCTGC+GGG 0.422500 7:+77574689 MsG0780040439.01.T01:CDS
GTGACATACTTGTAACTTTG+AGG 0.423328 7:-77571846 None:intergenic
TCTGCAGCTGGAGGGGTTGT+TGG 0.424120 7:+77574176 MsG0780040439.01.T01:intron
TATAGTCCACAAGGAGACTT+TGG 0.426981 7:-77574780 None:intergenic
CACTTATATGCATGTCCCAT+TGG 0.428778 7:+77577196 MsG0780040439.01.T01:intron
GTTGTTGGTACAGCTTTGGT+TGG 0.430322 7:+77574191 MsG0780040439.01.T01:CDS
TGAATAGAGGTTAATGTTGA+AGG 0.433597 7:+77577448 MsG0780040439.01.T01:three_prime_UTR
TCGTTCTTCCAAGAGTTACT+TGG 0.437116 7:+77572049 MsG0780040439.01.T01:CDS
CTTTCACCACACTGCTCCAT+TGG 0.437794 7:+77574253 MsG0780040439.01.T01:CDS
GGTGCTTGTGTGTATGCTGT+TGG 0.448020 7:+77574212 MsG0780040439.01.T01:CDS
TCTGAAAATTGTGGGGAAAA+GGG 0.452112 7:+77576345 MsG0780040439.01.T01:CDS
CCTGGAACATCCTTGCATTG+GGG 0.457073 7:+77573927 MsG0780040439.01.T01:CDS
TTGTAATTCCAAGTAACTCT+TGG 0.459097 7:-77572057 None:intergenic
GGTGCAGCCGCAATTGTCAA+TGG 0.460773 7:-77571969 None:intergenic
GGTGTTACACATTTGATGAA+TGG 0.462873 7:+77577218 MsG0780040439.01.T01:three_prime_UTR
AAGGTACATCCATAACCAAT+AGG 0.465111 7:-77572164 None:intergenic
ACTTATATGCATGTCCCATT+GGG 0.466539 7:+77577197 MsG0780040439.01.T01:intron
TGGAACATCCTTGCATTGGG+GGG 0.469396 7:+77573929 MsG0780040439.01.T01:CDS
TTTAATAATGCACAGAATCA+TGG 0.477899 7:-77574537 None:intergenic
CCTGATACTGTCAAGCAAGC+TGG 0.481021 7:+77572682 MsG0780040439.01.T01:CDS
TTCTCTCCTCAGTGTACTTG+TGG 0.485145 7:+77575530 MsG0780040439.01.T01:CDS
GTGATCGTGATCTAGATTGC+AGG 0.488592 7:+77574458 MsG0780040439.01.T01:CDS
GGAACATCCTTGCATTGGGG+GGG 0.491351 7:+77573930 MsG0780040439.01.T01:CDS
CTGGAACATCCTTGCATTGG+GGG 0.492800 7:+77573928 MsG0780040439.01.T01:CDS
CCATAGATACCAAAAGCAAA+TGG 0.498363 7:-77574293 None:intergenic
CAGTGTGGTAATTGCTGCAT+GGG 0.500953 7:+77577063 MsG0780040439.01.T01:CDS
TGATGATTCTGCAGCTGGAG+GGG 0.502610 7:+77574169 MsG0780040439.01.T01:intron
CTAGGGCTTAATGTGTTGGC+TGG 0.503794 7:+77572640 MsG0780040439.01.T01:intron
CTGATACTGTCAAGCAAGCT+GGG 0.507959 7:+77572683 MsG0780040439.01.T01:CDS
GATTGCAGGATCAAGGTTGT+TGG 0.508591 7:+77574472 MsG0780040439.01.T01:CDS
CGACGCTTCCATATAAAACA+TGG 0.510472 7:-77574679 None:intergenic
CACACTTTAATTTCAGCAAG+TGG 0.510645 7:+77577152 MsG0780040439.01.T01:three_prime_UTR
TACTGTCAAGCAAGCTGGGT+GGG 0.510689 7:+77572687 MsG0780040439.01.T01:CDS
ATATGGAAGCGTCGGAGCTG+CGG 0.518169 7:+77574688 MsG0780040439.01.T01:CDS
GTGATGATTCTGCAGCTGGA+GGG 0.520304 7:+77574168 MsG0780040439.01.T01:intron
TGATCTAGATTGCAGGATCA+AGG 0.523549 7:+77574465 MsG0780040439.01.T01:CDS
ATCAAATGTGTAACACCCAA+TGG 0.525526 7:-77577212 None:intergenic
TACAATTTCAGGGCTAGTGA+TGG 0.528796 7:+77575497 MsG0780040439.01.T01:CDS
GTACTAGTACCAAATAATCA+TGG 0.535108 7:-77577346 None:intergenic
TCAAATGTGTAACACCCAAT+GGG 0.541406 7:-77577211 None:intergenic
TGGCCAGCAACAACAGTGAC+AGG 0.546238 7:+77571658 MsG0780040439.01.T01:CDS
GGAATAGTATGTGCTTCCCT+TGG 0.550647 7:+77577085 MsG0780040439.01.T01:CDS
GATTTCTTATGTTTGGCGAA+AGG 0.551409 7:+77574711 MsG0780040439.01.T01:CDS
ATGTCTAGGGCTTAATGTGT+TGG 0.553265 7:+77572636 MsG0780040439.01.T01:intron
TGGAAGAACGACCGGCCGCA+AGG 0.558295 7:-77572037 None:intergenic
CTAGAGATGAATATGTTCCA+AGG 0.558458 7:-77577102 None:intergenic
TTGCTTCCAAAGTCTCCTTG+TGG 0.559184 7:+77574774 MsG0780040439.01.T01:CDS
AGTTACTTGGAATTACAAGA+TGG 0.563969 7:+77572062 MsG0780040439.01.T01:CDS
ATTTACGCAAGCCTTGCGGC+CGG 0.565271 7:+77572026 MsG0780040439.01.T01:CDS
ACGCAGCTTCTCCAATATCT+GGG 0.573367 7:-77572807 None:intergenic
GTAACTCTTGGAAGAACGAC+CGG 0.577004 7:-77572045 None:intergenic
CATTGCTTTCAAAGCAGAGA+AGG 0.579024 7:+77572772 MsG0780040439.01.T01:CDS
TTCTTTGTCAGTGGAAACCA+AGG 0.580690 7:+77574418 MsG0780040439.01.T01:intron
AAATATTGGATCAGTTCTAA+GGG 0.582237 7:+77571992 MsG0780040439.01.T01:CDS
CTCAAATTCAAGAATCAACA+TGG 0.585458 7:+77572099 MsG0780040439.01.T01:CDS
GAAAAGGGCTACAAATGCAC+AGG 0.586002 7:+77576360 MsG0780040439.01.T01:CDS
AATCTTTCACTTCTCAACAA+TGG 0.587279 7:+77571823 MsG0780040439.01.T01:CDS
AATTCAAGAATCAACATGGT+GGG 0.587741 7:+77572103 MsG0780040439.01.T01:CDS
CACAGAATCATGGTCAAATG+TGG 0.588453 7:-77574527 None:intergenic
TCTTGATCCATTGACAATTG+CGG 0.597106 7:+77571962 MsG0780040439.01.T01:CDS
TCAGTGTGGTAATTGCTGCA+TGG 0.607399 7:+77577062 MsG0780040439.01.T01:CDS
AGGCTTGCGTAAATAACACT+TGG 0.608324 7:-77572017 None:intergenic
ACAGAATGATCTAATAATCA+CGG 0.608409 7:-77577307 None:intergenic
GACTTCGTCTCAGATTACAT+TGG 0.608432 7:+77574733 MsG0780040439.01.T01:CDS
GTTGGAACAAGAAAAGATGT+TGG 0.615898 7:+77574230 MsG0780040439.01.T01:CDS
ACACCACTCCAGTTTACCAA+TGG 0.617774 7:-77574269 None:intergenic
TAGAGATGAATATGTTCCAA+GGG 0.619334 7:-77577101 None:intergenic
AGATCCTTCAACCAAACAGT+AGG 0.620748 7:-77574008 None:intergenic
TGCAGCACTTACATATAACT+CGG 0.621394 7:-77573780 None:intergenic
GTGATTATTAGATCATTCTG+TGG 0.622839 7:+77577309 MsG0780040439.01.T01:three_prime_UTR
TTCCAGGAAACAGACCAGAA+AGG 0.630155 7:-77573911 None:intergenic
GACGCTTCCATATAAAACAT+GGG 0.633635 7:-77574678 None:intergenic
GCTCCATTGGTAAACTGGAG+TGG 0.644409 7:+77574266 MsG0780040439.01.T01:CDS
TGTTATTTACGCAAGCCTTG+CGG 0.644615 7:+77572022 MsG0780040439.01.T01:CDS
CTCTAGTAAAGATTGTGCAT+AGG 0.658851 7:+77577119 MsG0780040439.01.T01:CDS
TTGGAAGCAAATGCATCTCG+TGG 0.668817 7:-77574761 None:intergenic
AAATTCAAGAATCAACATGG+TGG 0.671637 7:+77572102 MsG0780040439.01.T01:CDS
ATACTGTCAAGCAAGCTGGG+TGG 0.693466 7:+77572686 MsG0780040439.01.T01:CDS
TGTGCAGGTTATTCTCAGTG+TGG 0.712539 7:+77577048 MsG0780040439.01.T01:intron
AGTTTACCAATGGAGCAGTG+TGG 0.715260 7:-77574259 None:intergenic
AGTGTGGTAATTGCTGCATG+GGG 0.745704 7:+77577064 MsG0780040439.01.T01:CDS
TGCTTACCACAAGTACACTG+AGG 0.766695 7:-77575536 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATGATTTCAAATTTA+GGG - Chr7:77572315-77572334 None:intergenic 10.0%
!! TAATAAATATAAGACATAAA+AGG - Chr7:77574928-77574947 None:intergenic 10.0%
!! TACTTATTTATTCATAATTA+TGG - Chr7:77576548-77576567 None:intergenic 10.0%
!! TATATTATGATTTCAAATTT+AGG - Chr7:77572316-77572335 None:intergenic 10.0%
!!! AATTTGAAATCATAATATAA+AGG + Chr7:77572317-77572336 MsG0780040439.01.T01:intron 10.0%
!!! TAAATAAAAATTTAGAGTAA+GGG - Chr7:77575743-77575762 None:intergenic 10.0%
!!! TTTTTTTACTTTTGATTATT+GGG + Chr7:77572868-77572887 MsG0780040439.01.T01:intron 10.0%
!! AAGAAAAAAAAAATCAAGTT+TGG - Chr7:77576093-77576112 None:intergenic 15.0%
!! AGTAATAAAGGAAAAATAAA+TGG - Chr7:77573812-77573831 None:intergenic 15.0%
!! GATATAAAATAAAAGATCAA+AGG - Chr7:77573565-77573584 None:intergenic 15.0%
!! TGAAGGATTAATTTATATAT+CGG + Chr7:77577465-77577484 MsG0780040439.01.T01:three_prime_UTR 15.0%
!!! AAATAAAAATTTAGAGTAAG+GGG - Chr7:77575742-77575761 None:intergenic 15.0%
!!! AACTTGATTTTTTTTTTCTT+TGG + Chr7:77576093-77576112 MsG0780040439.01.T01:intron 15.0%
!!! AATTTTAAATTAACTAGTGT+TGG - Chr7:77573324-77573343 None:intergenic 15.0%
!!! GTAAATAAAAATTTAGAGTA+AGG - Chr7:77575744-77575763 None:intergenic 15.0%
!!! GTTTTTTTACTTTTGATTAT+TGG + Chr7:77572867-77572886 MsG0780040439.01.T01:intron 15.0%
!!! TGATTACTAATTTTAGAAAA+GGG + Chr7:77576472-77576491 MsG0780040439.01.T01:intron 15.0%
!!! TTGATTACTAATTTTAGAAA+AGG + Chr7:77576471-77576490 MsG0780040439.01.T01:intron 15.0%
!!! TTTTTTACTTTTGATTATTG+GGG + Chr7:77572869-77572888 MsG0780040439.01.T01:intron 15.0%
!!! TTTTTTTACTTTTTATCTTG+TGG + Chr7:77573741-77573760 MsG0780040439.01.T01:intron 15.0%
!! AAAATAAAAGATCAAAGGTA+TGG - Chr7:77573560-77573579 None:intergenic 20.0%
!! ATAAAAGGATATTTAGTTAG+TGG - Chr7:77574913-77574932 None:intergenic 20.0%
!! ATTAAAAATAGTTTGAGTGA+AGG - Chr7:77572186-77572205 None:intergenic 20.0%
!! GCATTAAAAAAAGTAAAGTA+GGG - Chr7:77577019-77577038 None:intergenic 20.0%
!! GTAAATAAGATAATTGCATT+TGG - Chr7:77576426-77576445 None:intergenic 20.0%
!! TAAAAGGATATTTAGTTAGT+GGG - Chr7:77574912-77574931 None:intergenic 20.0%
!! TAACATGTTGAAGAATTATA+AGG - Chr7:77573518-77573537 None:intergenic 20.0%
!! TATCATGATACATTATTTCA+TGG - Chr7:77573594-77573613 None:intergenic 20.0%
!! TCAAAGTACATAAACAAAAT+TGG - Chr7:77571901-77571920 None:intergenic 20.0%
!! TGTAAAGTGATATATAATGT+AGG + Chr7:77576280-77576299 MsG0780040439.01.T01:intron 20.0%
!! TTAAATTCAAATCTATTGTG+TGG + Chr7:77573342-77573361 MsG0780040439.01.T01:intron 20.0%
!! TTCAAAAAAACTTGATATTG+CGG + Chr7:77572447-77572466 MsG0780040439.01.T01:intron 20.0%
!! TTCTTACTGATATAAAAACT+CGG - Chr7:77572846-77572865 None:intergenic 20.0%
!!! AAAATAAGTTGAATGTCTTA+AGG - Chr7:77576637-77576656 None:intergenic 20.0%
!!! ACTATAGTAAGAAAATTTTG+GGG + Chr7:77574797-77574816 MsG0780040439.01.T01:intron 20.0%
!!! GACTATAGTAAGAAAATTTT+GGG + Chr7:77574796-77574815 MsG0780040439.01.T01:intron 20.0%
!!! TAACAAAAAAGATTTTACGA+AGG + Chr7:77574367-77574386 MsG0780040439.01.T01:intron 20.0%
!!! TAATGAAAATTTCTCTGTTT+TGG + Chr7:77575703-77575722 MsG0780040439.01.T01:intron 20.0%
!!! TACCTCATACATTTTATTTT+TGG + Chr7:77574641-77574660 MsG0780040439.01.T01:intron 20.0%
!!! TTATGTTTTCTGAAAATTGT+GGG + Chr7:77576337-77576356 MsG0780040439.01.T01:CDS 20.0%
!!! TTCACTCAAACTATTTTTAA+TGG + Chr7:77572185-77572204 MsG0780040439.01.T01:CDS 20.0%
!!! TTGTATAGTTTTTTCTTTCT+AGG + Chr7:77574836-77574855 MsG0780040439.01.T01:intron 20.0%
!!! TTTATGTTTTCTGAAAATTG+TGG + Chr7:77576336-77576355 MsG0780040439.01.T01:CDS 20.0%
!!! TTTCTTTATTCTTTTGAACT+GGG + Chr7:77572417-77572436 MsG0780040439.01.T01:intron 20.0%
! AAAAAAAGTTTCTATGTGTG+TGG + Chr7:77575379-77575398 MsG0780040439.01.T01:intron 25.0%
! AAATATGTATGTGTATGTCT+AGG + Chr7:77572622-77572641 MsG0780040439.01.T01:intron 25.0%
! AAATCCTTAAAATTAGCTGA+AGG - Chr7:77576254-77576273 None:intergenic 25.0%
! AAATTTAGTCCATGTAATGT+TGG - Chr7:77576224-77576243 None:intergenic 25.0%
! AACAATACTTACCGAAAAAT+GGG - Chr7:77575159-77575178 None:intergenic 25.0%
! AATAAGGTATAAAAAACCAG+AGG - Chr7:77573413-77573432 None:intergenic 25.0%
! AATACATAAGCGTGTTTAAA+TGG - Chr7:77576716-77576735 None:intergenic 25.0%
! AATATGTATGTGTATGTCTA+GGG + Chr7:77572623-77572642 MsG0780040439.01.T01:intron 25.0%
! AATTTAGTCCATGTAATGTT+GGG - Chr7:77576223-77576242 None:intergenic 25.0%
! ACAGAATGATCTAATAATCA+CGG - Chr7:77577310-77577329 None:intergenic 25.0%
! ACTTGACTAACAAATACAAT+AGG + Chr7:77575915-77575934 MsG0780040439.01.T01:intron 25.0%
! AGCATATGTGTTCATAATTA+AGG - Chr7:77575008-77575027 None:intergenic 25.0%
! AGCCATAGATTGATAAATAT+TGG - Chr7:77574348-77574367 None:intergenic 25.0%
! ATAACTTAGATTATGTGATG+TGG + Chr7:77576909-77576928 MsG0780040439.01.T01:intron 25.0%
! ATACATAAGCGTGTTTAAAT+GGG - Chr7:77576715-77576734 None:intergenic 25.0%
! ATGAAATGCAATCAAACTTT+CGG + Chr7:77573067-77573086 MsG0780040439.01.T01:intron 25.0%
! ATTCATTATTTGTCACATCT+CGG + Chr7:77575851-77575870 MsG0780040439.01.T01:intron 25.0%
! CACTAAACAATTACGAATAT+CGG + Chr7:77575679-77575698 MsG0780040439.01.T01:intron 25.0%
! CAGTATGATAAAATCAATAC+TGG + Chr7:77575432-77575451 MsG0780040439.01.T01:intron 25.0%
! CATCACATAATCTAAGTTAT+TGG - Chr7:77576909-77576928 None:intergenic 25.0%
! GAAAACTTAAGAGTAGAATA+TGG - Chr7:77576975-77576994 None:intergenic 25.0%
! GATCATATTCTTATGAAGAA+AGG - Chr7:77572919-77572938 None:intergenic 25.0%
! GCCATAGATTGATAAATATT+GGG - Chr7:77574347-77574366 None:intergenic 25.0%
! GGCATTAAAAAAAGTAAAGT+AGG - Chr7:77577020-77577039 None:intergenic 25.0%
! GTCCAAAAATAAAATGTATG+AGG - Chr7:77574646-77574665 None:intergenic 25.0%
! TAAAACAGTAGTTCAAATCA+TGG - Chr7:77576070-77576089 None:intergenic 25.0%
! TAATGTTGGGAACATTAAAA+AGG - Chr7:77576210-77576229 None:intergenic 25.0%
! TCCCAATATTTATCAATCTA+TGG + Chr7:77574343-77574362 MsG0780040439.01.T01:intron 25.0%
! TTATTATTCTTCCTACTGTT+TGG + Chr7:77573997-77574016 MsG0780040439.01.T01:CDS 25.0%
! TTGTGTGGAATTTATTATCA+TGG + Chr7:77573878-77573897 MsG0780040439.01.T01:intron 25.0%
! TTTAAAGGAACATGATTTGA+AGG + Chr7:77575630-77575649 MsG0780040439.01.T01:intron 25.0%
! TTTAATAATGCACAGAATCA+TGG - Chr7:77574540-77574559 None:intergenic 25.0%
!! AAATATTGGATCAGTTCTAA+GGG + Chr7:77571992-77572011 MsG0780040439.01.T01:CDS 25.0%
!! ATTCATTTTATCGTGAATAG+AGG + Chr7:77577435-77577454 MsG0780040439.01.T01:three_prime_UTR 25.0%
!! ATTTCCTTCAGCTAATTTTA+AGG + Chr7:77576247-77576266 MsG0780040439.01.T01:intron 25.0%
!! ATTTTCAGAAAACATAAAGC+TGG - Chr7:77576334-77576353 None:intergenic 25.0%
!! CAAGCATTTATTTGCAATTT+TGG + Chr7:77573968-77573987 MsG0780040439.01.T01:CDS 25.0%
!! CATGTTTCAACTTCATATTT+TGG + Chr7:77576850-77576869 MsG0780040439.01.T01:intron 25.0%
!! GGACTATAGTAAGAAAATTT+TGG + Chr7:77574795-77574814 MsG0780040439.01.T01:intron 25.0%
!! GTTATAGAATTTGAAGTTTC+TGG + Chr7:77575954-77575973 MsG0780040439.01.T01:intron 25.0%
!! GTTTCTTTATTCTTTTGAAC+TGG + Chr7:77572416-77572435 MsG0780040439.01.T01:intron 25.0%
!! TCTCCACAACTTAAAATTTT+GGG - Chr7:77574086-77574105 None:intergenic 25.0%
!! TGTAGGATTTCTATATTTTC+AGG + Chr7:77576297-77576316 MsG0780040439.01.T01:intron 25.0%
!! TTATTTAACCTTTTGCTTGT+TGG + Chr7:77575811-77575830 MsG0780040439.01.T01:intron 25.0%
!! TTCAGGAATATTCTTTTGAA+TGG - Chr7:77572138-77572157 None:intergenic 25.0%
!! TTCTTTATTCTTTTGAACTG+GGG + Chr7:77572418-77572437 MsG0780040439.01.T01:intron 25.0%
!! TTTAAATTAACTAGTGTTGG+AGG - Chr7:77573321-77573340 None:intergenic 25.0%
!!! AAACCAAGGTTTTTTAGAAA+AGG + Chr7:77574432-77574451 MsG0780040439.01.T01:CDS 25.0%
!!! AAATTTCTCTGTTTTGGATT+AGG + Chr7:77575709-77575728 MsG0780040439.01.T01:intron 25.0%
!!! ACATTGTTTCTAATTTTGTC+TGG + Chr7:77574866-77574885 MsG0780040439.01.T01:intron 25.0%
!!! ATTTCTATATTTTCAGGCAA+TGG + Chr7:77576303-77576322 MsG0780040439.01.T01:intron 25.0%
!!! TATGTTTTCTGAAAATTGTG+GGG + Chr7:77576338-77576357 MsG0780040439.01.T01:CDS 25.0%
AAACAAACATAGCGTATGTT+TGG - Chr7:77573115-77573134 None:intergenic 30.0%
AAATTCAAGAATCAACATGG+TGG + Chr7:77572102-77572121 MsG0780040439.01.T01:CDS 30.0%
AACAAACATAGCGTATGTTT+GGG - Chr7:77573114-77573133 None:intergenic 30.0%
AACAGAATGAAGAGACAATA+AGG - Chr7:77573429-77573448 None:intergenic 30.0%
AACTTGATATGTCATACAGA+TGG - Chr7:77573840-77573859 None:intergenic 30.0%
AATAACCTGCACATGATATA+TGG - Chr7:77577041-77577060 None:intergenic 30.0%
AATCTTTCACTTCTCAACAA+TGG + Chr7:77571823-77571842 MsG0780040439.01.T01:CDS 30.0%
AATTCAAGAATCAACATGGT+GGG + Chr7:77572103-77572122 MsG0780040439.01.T01:CDS 30.0%
ACCAAATAATCATGGATCTA+TGG - Chr7:77577341-77577360 None:intergenic 30.0%
ACCATAGATCCATGATTATT+TGG + Chr7:77577337-77577356 MsG0780040439.01.T01:three_prime_UTR 30.0%
ACGTGAAAACAAATCCTTAT+TGG - Chr7:77576799-77576818 None:intergenic 30.0%
AGTATCAGATATTTGTAGCA+TGG - Chr7:77575278-77575297 None:intergenic 30.0%
AGTTACTTGGAATTACAAGA+TGG + Chr7:77572062-77572081 MsG0780040439.01.T01:CDS 30.0%
AGTTTGATTGCATTTCATCA+TGG - Chr7:77573065-77573084 None:intergenic 30.0%
ATAATATAAAGGACTGCAGT+TGG + Chr7:77572328-77572347 MsG0780040439.01.T01:intron 30.0%
CAAATATTGGATCAGTTCTA+AGG + Chr7:77571991-77572010 MsG0780040439.01.T01:CDS 30.0%
CAGTTGAATACATGTTAGTA+CGG + Chr7:77576520-77576539 MsG0780040439.01.T01:intron 30.0%
CTCAAATTCAAGAATCAACA+TGG + Chr7:77572099-77572118 MsG0780040439.01.T01:CDS 30.0%
CTTAGAACTGATCCAATATT+TGG - Chr7:77571993-77572012 None:intergenic 30.0%
GAACAATACTTACCGAAAAA+TGG - Chr7:77575160-77575179 None:intergenic 30.0%
GATGTAGTGTCTTAGTATTT+AGG + Chr7:77573251-77573270 MsG0780040439.01.T01:intron 30.0%
GTACTAGTACCAAATAATCA+TGG - Chr7:77577349-77577368 None:intergenic 30.0%
GTGATTATTAGATCATTCTG+TGG + Chr7:77577309-77577328 MsG0780040439.01.T01:three_prime_UTR 30.0%
GTGGAATTTATTATCATGGA+AGG + Chr7:77573882-77573901 MsG0780040439.01.T01:intron 30.0%
TAAAGTAGGGAGAGAAAAAT+TGG - Chr7:77577006-77577025 None:intergenic 30.0%
TACATAACTTTCTTTGTCAG+TGG + Chr7:77574409-77574428 MsG0780040439.01.T01:intron 30.0%
TAGAGATGAATATGTTCCAA+GGG - Chr7:77577104-77577123 None:intergenic 30.0%
TATAGGGAGTTTGAATGAAA+AGG - Chr7:77573637-77573656 None:intergenic 30.0%
TCAATATCTAGCGATGTATA+AGG + Chr7:77575586-77575605 MsG0780040439.01.T01:intron 30.0%
TCTTTAACACTCCTGTTATA+GGG - Chr7:77573653-77573672 None:intergenic 30.0%
TGAATAGAGGTTAATGTTGA+AGG + Chr7:77577448-77577467 MsG0780040439.01.T01:three_prime_UTR 30.0%
TGCTACAAATATCTGATACT+CGG + Chr7:77575278-77575297 MsG0780040439.01.T01:intron 30.0%
TTAATGTTCCCAACATTACA+TGG + Chr7:77576212-77576231 MsG0780040439.01.T01:intron 30.0%
TTCATTATTTGTCACATCTC+GGG + Chr7:77575852-77575871 MsG0780040439.01.T01:intron 30.0%
TTCTTCAACATGTTACTGAA+TGG + Chr7:77573523-77573542 MsG0780040439.01.T01:intron 30.0%
TTCTTTAACACTCCTGTTAT+AGG - Chr7:77573654-77573673 None:intergenic 30.0%
TTGTAATTCCAAGTAACTCT+TGG - Chr7:77572060-77572079 None:intergenic 30.0%
! ACATCTTTTGGTACAATTTC+AGG + Chr7:77575486-77575505 MsG0780040439.01.T01:CDS 30.0%
! CACGTACTGTTATCTTTTAA+AGG + Chr7:77575615-77575634 MsG0780040439.01.T01:intron 30.0%
! CATCTTTTGGTACAATTTCA+GGG + Chr7:77575487-77575506 MsG0780040439.01.T01:CDS 30.0%
! GTATGATTTATGTGATAGTG+AGG + Chr7:77571938-77571957 MsG0780040439.01.T01:intron 30.0%
! GTCTCCACAACTTAAAATTT+TGG - Chr7:77574087-77574106 None:intergenic 30.0%
! TGTTTTGCCCATGTTTTATA+TGG + Chr7:77574671-77574690 MsG0780040439.01.T01:CDS 30.0%
! TTACAAGATGGTTTTCTAAC+TGG + Chr7:77572074-77572093 MsG0780040439.01.T01:CDS 30.0%
! TTTTCTTACTATAGTCCACA+AGG - Chr7:77574792-77574811 None:intergenic 30.0%
!! AGACCTTTTCTAAAAAACCT+TGG - Chr7:77574438-77574457 None:intergenic 30.0%
!! ATAACAGGAGTGTTAAAGAA+TGG + Chr7:77573654-77573673 MsG0780040439.01.T01:intron 30.0%
!! CATTTGCTTTTGGTATCTAT+GGG + Chr7:77574294-77574313 MsG0780040439.01.T01:CDS 30.0%
!! GCTATAAATGGACTAAATGA+AGG + Chr7:77573177-77573196 MsG0780040439.01.T01:intron 30.0%
!!! CAAATTTTGAGACTCCAATA+AGG + Chr7:77576782-77576801 MsG0780040439.01.T01:intron 30.0%
!!! GATCCCAAAATTTTAAGTTG+TGG + Chr7:77574080-77574099 MsG0780040439.01.T01:intron 30.0%
AAACAAAGTACACACGTGTT+TGG - Chr7:77572385-77572404 None:intergenic 35.0%
AAGGTACATCCATAACCAAT+AGG - Chr7:77572167-77572186 None:intergenic 35.0%
ACTTATATGCATGTCCCATT+GGG + Chr7:77577197-77577216 MsG0780040439.01.T01:intron 35.0%
AGAATCATCACAGGTTATCT+CGG - Chr7:77574159-77574178 None:intergenic 35.0%
AGATTATGTGATGTGGTCAA+AGG + Chr7:77576916-77576935 MsG0780040439.01.T01:intron 35.0%
ATCAAATGTGTAACACCCAA+TGG - Chr7:77577215-77577234 None:intergenic 35.0%
ATCATTAGCTACCCAGATAT+TGG + Chr7:77572796-77572815 MsG0780040439.01.T01:CDS 35.0%
ATGAATGCAGTCATATTGTG+TGG + Chr7:77573863-77573882 MsG0780040439.01.T01:intron 35.0%
ATTCCTGAAGAATTGCCTAT+TGG + Chr7:77572149-77572168 MsG0780040439.01.T01:CDS 35.0%
ATTGATTGCACTGTCGAAAA+TGG + Chr7:77577263-77577282 MsG0780040439.01.T01:three_prime_UTR 35.0%
CAGATGGTGTAGAGTAATAA+AGG - Chr7:77573824-77573843 None:intergenic 35.0%
CATATCACTATAGCTAGAGA+TGG + Chr7:77575236-77575255 MsG0780040439.01.T01:intron 35.0%
CCATAGATACCAAAAGCAAA+TGG - Chr7:77574296-77574315 None:intergenic 35.0%
CTAACAAATACAATAGGCAC+TGG + Chr7:77575921-77575940 MsG0780040439.01.T01:intron 35.0%
CTACAAACTGTAGCTTCAAA+AGG - Chr7:77573031-77573050 None:intergenic 35.0%
CTAGAGATGAATATGTTCCA+AGG - Chr7:77577105-77577124 None:intergenic 35.0%
CTCTAGTAAAGATTGTGCAT+AGG + Chr7:77577119-77577138 MsG0780040439.01.T01:CDS 35.0%
GACGCTTCCATATAAAACAT+GGG - Chr7:77574681-77574700 None:intergenic 35.0%
GAGAGAAAAATTGGAAGGAT+AGG - Chr7:77576997-77577016 None:intergenic 35.0%
GATTTCTTATGTTTGGCGAA+AGG + Chr7:77574711-77574730 MsG0780040439.01.T01:CDS 35.0%
GTAGTGTCTTAGTATTTAGG+TGG + Chr7:77573254-77573273 MsG0780040439.01.T01:intron 35.0%
GTGACATACTTGTAACTTTG+AGG - Chr7:77571849-77571868 None:intergenic 35.0%
GTTGGAACAAGAAAAGATGT+TGG + Chr7:77574230-77574249 MsG0780040439.01.T01:CDS 35.0%
TAACCAATAGGCAATTCTTC+AGG - Chr7:77572155-77572174 None:intergenic 35.0%
TAATGCCATATATCATGTGC+AGG + Chr7:77577033-77577052 MsG0780040439.01.T01:intron 35.0%
TACTGGTATTATGTGTCAGA+TGG + Chr7:77575449-77575468 MsG0780040439.01.T01:intron 35.0%
TCAAATGTGTAACACCCAAT+GGG - Chr7:77577214-77577233 None:intergenic 35.0%
TCATTCAAACTCCCTATAAC+AGG + Chr7:77573639-77573658 MsG0780040439.01.T01:intron 35.0%
TCTGAAAATTGTGGGGAAAA+GGG + Chr7:77576345-77576364 MsG0780040439.01.T01:CDS 35.0%
TCTTAGTATTTAGGTGGTCT+TGG + Chr7:77573260-77573279 MsG0780040439.01.T01:intron 35.0%
TCTTGATCCATTGACAATTG+CGG + Chr7:77571962-77571981 MsG0780040439.01.T01:CDS 35.0%
TGCAGCACTTACATATAACT+CGG - Chr7:77573783-77573802 None:intergenic 35.0%
TGGCTAGAAAGATAAGTAAC+TGG - Chr7:77577178-77577197 None:intergenic 35.0%
TGTTGAGAAGTGAAAGATTC+AGG - Chr7:77571822-77571841 None:intergenic 35.0%
TTACGAAGGCAATACTCATA+TGG + Chr7:77574381-77574400 MsG0780040439.01.T01:intron 35.0%
TTACGTAGTCAACTCAAGAT+TGG + Chr7:77576821-77576840 MsG0780040439.01.T01:intron 35.0%
TTGGCGAAGTGAAGTTTAAT+TGG + Chr7:77573375-77573394 MsG0780040439.01.T01:intron 35.0%
! AAAAAAGTGTGTTGCTATCC+AGG - Chr7:77574601-77574620 None:intergenic 35.0%
! AACATGTCTGTGACATCTTT+TGG + Chr7:77575474-77575493 MsG0780040439.01.T01:CDS 35.0%
! ACGTGTTTGGTAACAAAGTT+TGG - Chr7:77572372-77572391 None:intergenic 35.0%
! ATTGTGTGGTTCTTGTTTCT+TGG + Chr7:77573356-77573375 MsG0780040439.01.T01:intron 35.0%
! ATTTAGGTGGTCTTGGTAAT+TGG + Chr7:77573267-77573286 MsG0780040439.01.T01:intron 35.0%
! CACACTTTAATTTCAGCAAG+TGG + Chr7:77577152-77577171 MsG0780040439.01.T01:three_prime_UTR 35.0%
! GAAGAATTGCCTATTGGTTA+TGG + Chr7:77572155-77572174 MsG0780040439.01.T01:CDS 35.0%
! GGTGTTACACATTTGATGAA+TGG + Chr7:77577218-77577237 MsG0780040439.01.T01:three_prime_UTR 35.0%
! TTCTGAAAATTGTGGGGAAA+AGG + Chr7:77576344-77576363 MsG0780040439.01.T01:CDS 35.0%
!! AATAGGCACTGGTATGTATA+TGG + Chr7:77575932-77575951 MsG0780040439.01.T01:intron 35.0%
!! AGTTCTAGGTTCTAACATTG+TGG + Chr7:77573460-77573479 MsG0780040439.01.T01:intron 35.0%
!! CATGTTTTATATGGAAGCGT+CGG + Chr7:77574680-77574699 MsG0780040439.01.T01:CDS 35.0%
!! CCATTTGCTTTTGGTATCTA+TGG + Chr7:77574293-77574312 MsG0780040439.01.T01:CDS 35.0%
!! CGTGTTTAAATGGGTTTTCT+TGG - Chr7:77576706-77576725 None:intergenic 35.0%
!! GCTTTTCTGATCCCATTTTT+CGG + Chr7:77575145-77575164 MsG0780040439.01.T01:intron 35.0%
!! TATTTTTATGCACCCTCTCA+AGG - Chr7:77576499-77576518 None:intergenic 35.0%
!! TTTTGTCTGGTTTCTCTTTC+AGG + Chr7:77574879-77574898 MsG0780040439.01.T01:intron 35.0%
AAACATAGCGTATGTTTGGG+AGG - Chr7:77573111-77573130 None:intergenic 40.0%
AGAACCTAGAACTAGAACGA+AGG - Chr7:77573453-77573472 None:intergenic 40.0%
AGATCCTTCAACCAAACAGT+AGG - Chr7:77574011-77574030 None:intergenic 40.0%
AGGCTTGCGTAAATAACACT+TGG - Chr7:77572020-77572039 None:intergenic 40.0%
AGTCTCGCAATGGCTATAAA+TGG + Chr7:77573165-77573184 MsG0780040439.01.T01:intron 40.0%
ATAGCATCTCACGCACTAAT+TGG + Chr7:77575074-77575093 MsG0780040439.01.T01:intron 40.0%
ATGTGATGTTTACACCTGCA+AGG + Chr7:77576035-77576054 MsG0780040439.01.T01:intron 40.0%
CAACAATGCCAACAAGCAAA+AGG - Chr7:77575822-77575841 None:intergenic 40.0%
CAATGGGACATGCATATAAG+TGG - Chr7:77577198-77577217 None:intergenic 40.0%
CACAGAATCATGGTCAAATG+TGG - Chr7:77574530-77574549 None:intergenic 40.0%
CACTTATATGCATGTCCCAT+TGG + Chr7:77577196-77577215 MsG0780040439.01.T01:intron 40.0%
CATTGCTTTCAAAGCAGAGA+AGG + Chr7:77572772-77572791 MsG0780040439.01.T01:CDS 40.0%
CCAATTTACAAGATTACCCG+TGG - Chr7:77572279-77572298 None:intergenic 40.0%
CCACGGGTAATCTTGTAAAT+TGG + Chr7:77572276-77572295 MsG0780040439.01.T01:intron 40.0%
CGACGCTTCCATATAAAACA+TGG - Chr7:77574682-77574701 None:intergenic 40.0%
GAAGCTGCGTTTGGAAAATA+TGG + Chr7:77572820-77572839 MsG0780040439.01.T01:CDS 40.0%
GAAGTGACTCATACGTGTAA+AGG + Chr7:77573210-77573229 MsG0780040439.01.T01:intron 40.0%
GACTTCGTCTCAGATTACAT+TGG + Chr7:77574733-77574752 MsG0780040439.01.T01:CDS 40.0%
GTAGGGAGAGAAAAATTGGA+AGG - Chr7:77577002-77577021 None:intergenic 40.0%
GTAGTCAACTCAAGATTGGA+CGG + Chr7:77576825-77576844 MsG0780040439.01.T01:intron 40.0%
GTTGGAGACGTAAGCAAAAT+TGG + Chr7:77572346-77572365 MsG0780040439.01.T01:intron 40.0%
GTTTAGAGAACCTGAGAGAT+AGG - Chr7:77574045-77574064 None:intergenic 40.0%
TAAGCGTGTGTTTGTCTTGT+CGG + Chr7:77572982-77573001 MsG0780040439.01.T01:intron 40.0%
TATAGTCCACAAGGAGACTT+TGG - Chr7:77574783-77574802 None:intergenic 40.0%
TCATTTCATGCCACATCAAG+TGG + Chr7:77575313-77575332 MsG0780040439.01.T01:intron 40.0%
TCGTTCTTCCAAGAGTTACT+TGG + Chr7:77572049-77572068 MsG0780040439.01.T01:CDS 40.0%
TCTTCCTACTGTTTGGTTGA+AGG + Chr7:77574004-77574023 MsG0780040439.01.T01:CDS 40.0%
TGATCTAGATTGCAGGATCA+AGG + Chr7:77574465-77574484 MsG0780040439.01.T01:CDS 40.0%
TGCAATCAAACTTTCGGTAG+TGG + Chr7:77573073-77573092 MsG0780040439.01.T01:intron 40.0%
TGTTGTGAACCTTGATATCG+CGG + Chr7:77572246-77572265 MsG0780040439.01.T01:intron 40.0%
TTAGAAAAGGGTCCTTGAGA+GGG + Chr7:77576484-77576503 MsG0780040439.01.T01:intron 40.0%
TTCTTTGTCAGTGGAAACCA+AGG + Chr7:77574418-77574437 MsG0780040439.01.T01:intron 40.0%
TTGTCTTGTCGGTAGACAAA+AGG + Chr7:77572993-77573012 MsG0780040439.01.T01:intron 40.0%
TTTAGAAAAGGGTCCTTGAG+AGG + Chr7:77576483-77576502 MsG0780040439.01.T01:intron 40.0%
! AGTGGTGTTCCATTTGCTTT+TGG + Chr7:77574284-77574303 MsG0780040439.01.T01:CDS 40.0%
! ATCTATGGGTTTTGCTTTGC+AGG + Chr7:77574308-77574327 MsG0780040439.01.T01:intron 40.0%
! ATGTCTAGGGCTTAATGTGT+TGG + Chr7:77572636-77572655 MsG0780040439.01.T01:intron 40.0%
! TAACTAGTGTTGGAGGTTCA+AGG - Chr7:77573314-77573333 None:intergenic 40.0%
! TACAATTTCAGGGCTAGTGA+TGG + Chr7:77575497-77575516 MsG0780040439.01.T01:CDS 40.0%
! TCGGTAAGTGCTTGCTAATA+AGG - Chr7:77574140-77574159 None:intergenic 40.0%
! TCTATGGGTTTTGCTTTGCA+GGG + Chr7:77574309-77574328 MsG0780040439.01.T01:intron 40.0%
! TGTTATTTACGCAAGCCTTG+CGG + Chr7:77572022-77572041 MsG0780040439.01.T01:CDS 40.0%
! TTGGTCTGTTTTCATTCCTC+TGG + Chr7:77573394-77573413 MsG0780040439.01.T01:intron 40.0%
!! GTGAATGATTAGTCTCGCAA+TGG + Chr7:77573155-77573174 MsG0780040439.01.T01:intron 40.0%
!! GTTTCCTTCGTTCTAGTTCT+AGG + Chr7:77573446-77573465 MsG0780040439.01.T01:intron 40.0%
!! TTAATGTGTTGGCTGGAGTT+GGG + Chr7:77572647-77572666 MsG0780040439.01.T01:CDS 40.0%
AAAACGACAGTTCCAAACCG+CGG - Chr7:77572561-77572580 None:intergenic 45.0%
AACGCAGCTTCTCCAATATC+TGG - Chr7:77572811-77572830 None:intergenic 45.0%
ACACACGCTTAGTGTGTGTT+TGG - Chr7:77572973-77572992 None:intergenic 45.0%
ACACCACTCCAGTTTACCAA+TGG - Chr7:77574272-77574291 None:intergenic 45.0%
ACACTGCTCCATTGGTAAAC+TGG + Chr7:77574261-77574280 MsG0780040439.01.T01:CDS 45.0%
ACGCAGCTTCTCCAATATCT+GGG - Chr7:77572810-77572829 None:intergenic 45.0%
AGTGTGGTAATTGCTGCATG+GGG + Chr7:77577064-77577083 MsG0780040439.01.T01:CDS 45.0%
AGTTTACCAATGGAGCAGTG+TGG - Chr7:77574262-77574281 None:intergenic 45.0%
ATGGAAGGCGATAACCTTTC+TGG + Chr7:77573897-77573916 MsG0780040439.01.T01:intron 45.0%
ATTGCGGCTGCACCAAATAT+TGG + Chr7:77571978-77571997 MsG0780040439.01.T01:CDS 45.0%
ATTTAAACCCCCCCAATGCA+AGG - Chr7:77573940-77573959 None:intergenic 45.0%
CAGTGTGGTAATTGCTGCAT+GGG + Chr7:77577063-77577082 MsG0780040439.01.T01:CDS 45.0%
CTGATACTGTCAAGCAAGCT+GGG + Chr7:77572683-77572702 MsG0780040439.01.T01:CDS 45.0%
CTGCAATTGTGATGTCGTTG+TGG + Chr7:77572490-77572509 MsG0780040439.01.T01:intron 45.0%
GAAAAGGGCTACAAATGCAC+AGG + Chr7:77576360-77576379 MsG0780040439.01.T01:CDS 45.0%
GAACCTTGATATCGCGGTTA+TGG + Chr7:77572252-77572271 MsG0780040439.01.T01:intron 45.0%
GATATTGGAGAAGCTGCGTT+TGG + Chr7:77572811-77572830 MsG0780040439.01.T01:CDS 45.0%
GATTGCAGGATCAAGGTTGT+TGG + Chr7:77574472-77574491 MsG0780040439.01.T01:CDS 45.0%
GCATTGGGGGGGTTTAAATT+TGG + Chr7:77573941-77573960 MsG0780040439.01.T01:CDS 45.0%
GCTGCGGGATTTCTTATGTT+TGG + Chr7:77574704-77574723 MsG0780040439.01.T01:CDS 45.0%
GGAATAGTATGTGCTTCCCT+TGG + Chr7:77577085-77577104 MsG0780040439.01.T01:CDS 45.0%
GTAACTCTTGGAAGAACGAC+CGG - Chr7:77572048-77572067 None:intergenic 45.0%
GTGATCGTGATCTAGATTGC+AGG + Chr7:77574458-77574477 MsG0780040439.01.T01:CDS 45.0%
TCAGTGTGGTAATTGCTGCA+TGG + Chr7:77577062-77577081 MsG0780040439.01.T01:CDS 45.0%
TCCTGGAACATCCTTGCATT+GGG + Chr7:77573926-77573945 MsG0780040439.01.T01:CDS 45.0%
TGCTTACCACAAGTACACTG+AGG - Chr7:77575539-77575558 None:intergenic 45.0%
TGGGGGGGTTTAAATTTGGA+TGG + Chr7:77573945-77573964 MsG0780040439.01.T01:CDS 45.0%
TGTGCAGGTTATTCTCAGTG+TGG + Chr7:77577048-77577067 MsG0780040439.01.T01:intron 45.0%
TTAGCAGTCACCACTTGATG+TGG - Chr7:77575326-77575345 None:intergenic 45.0%
TTAGTGCGTGAGATGCTATC+AGG - Chr7:77575073-77575092 None:intergenic 45.0%
TTCCAGGAAACAGACCAGAA+AGG - Chr7:77573914-77573933 None:intergenic 45.0%
TTCCTGGAACATCCTTGCAT+TGG + Chr7:77573925-77573944 MsG0780040439.01.T01:CDS 45.0%
TTCTCTCCTCAGTGTACTTG+TGG + Chr7:77575530-77575549 MsG0780040439.01.T01:CDS 45.0%
TTGCTTCCAAAGTCTCCTTG+TGG + Chr7:77574774-77574793 MsG0780040439.01.T01:CDS 45.0%
TTGGAAGCAAATGCATCTCG+TGG - Chr7:77574764-77574783 None:intergenic 45.0%
! AACCTTTCTGGTCTGTTTCC+TGG + Chr7:77573909-77573928 MsG0780040439.01.T01:CDS 45.0%
! AATTGGCCTGTTATTGCTCC+TGG + Chr7:77573284-77573303 MsG0780040439.01.T01:intron 45.0%
! CAGCCACATTTTCTCACACT+TGG - Chr7:77572473-77572492 None:intergenic 45.0%
! CGTTTTGTCTCCTATCTCTC+AGG + Chr7:77574032-77574051 MsG0780040439.01.T01:CDS 45.0%
! GTTGTTGGTACAGCTTTGGT+TGG + Chr7:77574191-77574210 MsG0780040439.01.T01:CDS 45.0%
!! CTTAATGTGTTGGCTGGAGT+TGG + Chr7:77572646-77572665 MsG0780040439.01.T01:CDS 45.0%
!! GGGCTAGTGATGGCTTTAAT+TGG + Chr7:77575507-77575526 MsG0780040439.01.T01:CDS 45.0%
!! TGCTTTGATGATGAACCCAC+TGG + Chr7:77575024-77575043 MsG0780040439.01.T01:intron 45.0%
!! TGGGCAAGTTTGCTGGTAAT+TGG + Chr7:77572706-77572725 MsG0780040439.01.T01:CDS 45.0%
!!! TCCAGGTTTTAAGCTGCAGT+CGG - Chr7:77574584-77574603 None:intergenic 45.0%
!! ATTACTTATAATAAATAATT+TGG - Chr7:77576012-77576031 None:intergenic 5.0%
ACCTGTGATGATTCTGCAGC+TGG + Chr7:77574164-77574183 MsG0780040439.01.T01:intron 50.0%
AGAGATGGTCAGCACTTTGC+AGG + Chr7:77575251-77575270 MsG0780040439.01.T01:intron 50.0%
AGGGGTTGTTGGTACAGCTT+TGG + Chr7:77574187-77574206 MsG0780040439.01.T01:CDS 50.0%
ATACTGTCAAGCAAGCTGGG+TGG + Chr7:77572686-77572705 MsG0780040439.01.T01:CDS 50.0%
ATATCGCGGTTATGGTCCAC+GGG + Chr7:77572260-77572279 MsG0780040439.01.T01:intron 50.0%
CCTGATACTGTCAAGCAAGC+TGG + Chr7:77572682-77572701 MsG0780040439.01.T01:CDS 50.0%
CCTGGAACATCCTTGCATTG+GGG + Chr7:77573927-77573946 MsG0780040439.01.T01:CDS 50.0%
CCTTCTTCTCAGAACAGCAC+TGG + Chr7:77575102-77575121 MsG0780040439.01.T01:intron 50.0%
CGGCCAAGTGTGAGAAAATG+TGG + Chr7:77572467-77572486 MsG0780040439.01.T01:intron 50.0%
CTGGAACATCCTTGCATTGG+GGG + Chr7:77573928-77573947 MsG0780040439.01.T01:CDS 50.0%
CTTTCACCACACTGCTCCAT+TGG + Chr7:77574253-77574272 MsG0780040439.01.T01:CDS 50.0%
GAGATGGTCAGCACTTTGCA+GGG + Chr7:77575252-77575271 MsG0780040439.01.T01:intron 50.0%
GATATCGCGGTTATGGTCCA+CGG + Chr7:77572259-77572278 MsG0780040439.01.T01:intron 50.0%
GCTCCATTGGTAAACTGGAG+TGG + Chr7:77574266-77574285 MsG0780040439.01.T01:CDS 50.0%
GGACCATAACCGCGATATCA+AGG - Chr7:77572258-77572277 None:intergenic 50.0%
GGTGCTTGTGTGTATGCTGT+TGG + Chr7:77574212-77574231 MsG0780040439.01.T01:CDS 50.0%
GTGATGATTCTGCAGCTGGA+GGG + Chr7:77574168-77574187 MsG0780040439.01.T01:intron 50.0%
GTTCCTGTCACTGTTGTTGC+TGG - Chr7:77571664-77571683 None:intergenic 50.0%
GTTTACACCTGCAAGGAGAG+AGG + Chr7:77576042-77576061 MsG0780040439.01.T01:intron 50.0%
TACTGTCAAGCAAGCTGGGT+GGG + Chr7:77572687-77572706 MsG0780040439.01.T01:CDS 50.0%
TCCAGCTGCAGAATCATCAC+AGG - Chr7:77574168-77574187 None:intergenic 50.0%
TGATGATTCTGCAGCTGGAG+GGG + Chr7:77574169-77574188 MsG0780040439.01.T01:intron 50.0%
TGGAACATCCTTGCATTGGG+GGG + Chr7:77573929-77573948 MsG0780040439.01.T01:CDS 50.0%
TGTGATGATTCTGCAGCTGG+AGG + Chr7:77574167-77574186 MsG0780040439.01.T01:intron 50.0%
TTAAGCTGCAGTCGGGGTAA+CGG - Chr7:77574576-77574595 None:intergenic 50.0%
! CCAGCTTGCTTGACAGTATC+AGG - Chr7:77572685-77572704 None:intergenic 50.0%
! CTAGGGCTTAATGTGTTGGC+TGG + Chr7:77572640-77572659 MsG0780040439.01.T01:intron 50.0%
!! CCAGTGCTGTTCTGAGAAGA+AGG - Chr7:77575105-77575124 None:intergenic 50.0%
!! TCTTGGACGCTGATTCTGTG+CGG - Chr7:77576689-77576708 None:intergenic 50.0%
!!! CAGGTTTTAAGCTGCAGTCG+GGG - Chr7:77574582-77574601 None:intergenic 50.0%
!!! CCAGGTTTTAAGCTGCAGTC+GGG - Chr7:77574583-77574602 None:intergenic 50.0%
ACAATTGCAGCCGTTGACCG+CGG + Chr7:77572541-77572560 MsG0780040439.01.T01:intron 55.0%
ATTTACGCAAGCCTTGCGGC+CGG + Chr7:77572026-77572045 MsG0780040439.01.T01:CDS 55.0%
CAGTTCCAAACCGCGGTCAA+CGG - Chr7:77572554-77572573 None:intergenic 55.0%
CCCCAATGCAAGGATGTTCC+AGG - Chr7:77573930-77573949 None:intergenic 55.0%
CCCGACTGCAGCTTAAAACC+TGG + Chr7:77574580-77574599 MsG0780040439.01.T01:intron 55.0%
CCTCCACACTTCTTGCCAGT+GGG - Chr7:77575042-77575061 None:intergenic 55.0%
GAACCCACTGGCAAGAAGTG+TGG + Chr7:77575036-77575055 MsG0780040439.01.T01:intron 55.0%
GGAACATCCTTGCATTGGGG+GGG + Chr7:77573930-77573949 MsG0780040439.01.T01:CDS 55.0%
GGTGCAGCCGCAATTGTCAA+TGG - Chr7:77571972-77571991 None:intergenic 55.0%
TCCTCCACACTTCTTGCCAG+TGG - Chr7:77575043-77575062 None:intergenic 55.0%
TGGCCAGCAACAACAGTGAC+AGG + Chr7:77571658-77571677 MsG0780040439.01.T01:CDS 55.0%
! GGAGCACCAGGAGCAATAAC+AGG - Chr7:77573293-77573312 None:intergenic 55.0%
!! ATATGGAAGCGTCGGAGCTG+CGG + Chr7:77574688-77574707 MsG0780040439.01.T01:CDS 55.0%
!! TTGGAGGTTCAAGGAGCACC+AGG - Chr7:77573305-77573324 None:intergenic 55.0%
AGCTGGGTGGGCAAGTTTGC+TGG + Chr7:77572699-77572718 MsG0780040439.01.T01:CDS 60.0%
CATGGAGCCTCTCTCCTTGC+AGG - Chr7:77576052-77576071 None:intergenic 60.0%
GCGGTCAACGGCTGCAATTG+TGG - Chr7:77572542-77572561 None:intergenic 60.0%
TCTGCAGCTGGAGGGGTTGT+TGG + Chr7:77574176-77574195 MsG0780040439.01.T01:intron 60.0%
! CCCACTGGCAAGAAGTGTGG+AGG + Chr7:77575039-77575058 MsG0780040439.01.T01:intron 60.0%
!! TATGGAAGCGTCGGAGCTGC+GGG + Chr7:77574689-77574708 MsG0780040439.01.T01:CDS 60.0%
TGCAGCCGTTGACCGCGGTT+TGG + Chr7:77572546-77572565 MsG0780040439.01.T01:intron 65.0%
TGGAAGAACGACCGGCCGCA+AGG - Chr7:77572040-77572059 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 77571657 77577522 77571657 ID=MsG0780040439.01;Name=MsG0780040439.01
Chr7 mRNA 77571657 77577522 77571657 ID=MsG0780040439.01.T01;Parent=MsG0780040439.01;Name=MsG0780040439.01.T01;_AED=0.47;_eAED=0.50;_QI=0|0.63|0.5|1|0.90|0.83|12|355|506
Chr7 exon 77571657 77571859 77571657 ID=MsG0780040439.01.T01:exon:15408;Parent=MsG0780040439.01.T01
Chr7 exon 77571956 77572206 77571956 ID=MsG0780040439.01.T01:exon:15409;Parent=MsG0780040439.01.T01
Chr7 exon 77572644 77572858 77572644 ID=MsG0780040439.01.T01:exon:15410;Parent=MsG0780040439.01.T01
Chr7 exon 77573767 77573842 77573767 ID=MsG0780040439.01.T01:exon:15411;Parent=MsG0780040439.01.T01
Chr7 exon 77573904 77574053 77573904 ID=MsG0780040439.01.T01:exon:15412;Parent=MsG0780040439.01.T01
Chr7 exon 77574183 77574315 77574183 ID=MsG0780040439.01.T01:exon:15413;Parent=MsG0780040439.01.T01
Chr7 exon 77574429 77574546 77574429 ID=MsG0780040439.01.T01:exon:15414;Parent=MsG0780040439.01.T01
Chr7 exon 77574668 77574802 77574668 ID=MsG0780040439.01.T01:exon:15415;Parent=MsG0780040439.01.T01
Chr7 exon 77575468 77575551 77575468 ID=MsG0780040439.01.T01:exon:15416;Parent=MsG0780040439.01.T01
Chr7 exon 77576319 77576381 77576319 ID=MsG0780040439.01.T01:exon:15417;Parent=MsG0780040439.01.T01
Chr7 exon 77577055 77577178 77577055 ID=MsG0780040439.01.T01:exon:15418;Parent=MsG0780040439.01.T01
Chr7 exon 77577199 77577522 77577199 ID=MsG0780040439.01.T01:exon:15419;Parent=MsG0780040439.01.T01
Chr7 CDS 77571657 77571859 77571657 ID=MsG0780040439.01.T01:cds;Parent=MsG0780040439.01.T01
Chr7 CDS 77571956 77572206 77571956 ID=MsG0780040439.01.T01:cds;Parent=MsG0780040439.01.T01
Chr7 CDS 77572644 77572858 77572644 ID=MsG0780040439.01.T01:cds;Parent=MsG0780040439.01.T01
Chr7 CDS 77573767 77573842 77573767 ID=MsG0780040439.01.T01:cds;Parent=MsG0780040439.01.T01
Chr7 CDS 77573904 77574053 77573904 ID=MsG0780040439.01.T01:cds;Parent=MsG0780040439.01.T01
Chr7 CDS 77574183 77574315 77574183 ID=MsG0780040439.01.T01:cds;Parent=MsG0780040439.01.T01
Chr7 CDS 77574429 77574546 77574429 ID=MsG0780040439.01.T01:cds;Parent=MsG0780040439.01.T01
Chr7 CDS 77574668 77574802 77574668 ID=MsG0780040439.01.T01:cds;Parent=MsG0780040439.01.T01
Chr7 CDS 77575468 77575551 77575468 ID=MsG0780040439.01.T01:cds;Parent=MsG0780040439.01.T01
Chr7 CDS 77576319 77576381 77576319 ID=MsG0780040439.01.T01:cds;Parent=MsG0780040439.01.T01
Chr7 CDS 77577055 77577147 77577055 ID=MsG0780040439.01.T01:cds;Parent=MsG0780040439.01.T01
Chr7 three_prime_UTR 77577148 77577178 77577148 ID=MsG0780040439.01.T01:three_prime_utr;Parent=MsG0780040439.01.T01
Chr7 three_prime_UTR 77577199 77577522 77577199 ID=MsG0780040439.01.T01:three_prime_utr;Parent=MsG0780040439.01.T01
Gene Sequence

>MsG0780040439.01.T01

ATGGCCAGCAACAACAGTGACAGGAACAAAGAAAAAGAGAATGAATATTTCTTAGATGCTAATGAAGATGAAACTGATATTGAAGCTGTTAACTACGACAGTGACAGTAGTAATAATAATAATGATGACGACGATGAAGATGATCGCATTGCTACTCATCGACCTGAATCTTTCACTTCTCAACAATGGCCTCAAAGTTACAATGAGGCTCTTGATCCATTGACAATTGCGGCTGCACCAAATATTGGATCAGTTCTAAGGGCACCAAGTGTTATTTACGCAAGCCTTGCGGCCGGTCGTTCTTCCAAGAGTTACTTGGAATTACAAGATGGTTTTCTAACTGGTTCTCAAATTCAAGAATCAACATGGTGGGAGAAAGCTTCCATTCAAAAGAATATTCCTGAAGAATTGCCTATTGGTTATGGATGTACCTTCACTCAAACTATTTTTAATGGGCTTAATGTGTTGGCTGGAGTTGGGCTTCTATCTGCACCTGATACTGTCAAGCAAGCTGGGTGGGCAAGTTTGCTGGTAATTGGTATTTTTGCAGTTGTATGTTTTTATACAGCAGAGCTTATGAGACATTGCTTTCAAAGCAGAGAAGGTATCATTAGCTACCCAGATATTGGAGAAGCTGCGTTTGGAAAATATGGCCGAGTTTTTATATCAATCGTTTTGTACACCGAGTTATATGTAAGTGCTGCAGTGCGTCCATTTATTTTTCCTTTATTACTCTACACCATCTGCGATAACCTTTCTGGTCTGTTTCCTGGAACATCCTTGCATTGGGGGGGTTTAAATTTGGATGGCAAGCATTTATTTGCAATTTTGGCTGCACTTATTATTCTTCCTACTGTTTGGTTGAAGGATCTTCGTTTTGTCTCCTATCTCTCAGCTGGAGGGGTTGTTGGTACAGCTTTGGTTGGTGCTTGTGTGTATGCTGTTGGAACAAGAAAAGATGTTGGCTTTCACCACACTGCTCCATTGGTAAACTGGAGTGGTGTTCCATTTGCTTTTGGTATCTATGGTGGAAACCAAGGTTTTTTAGAAAAGGTCTGTGATCGTGATCTAGATTGCAGGATCAAGGTTGTTGGTGTCTTTGTGACTGTTATTGAGTCTACATTAGCCACATTTGACCATGATTCTTTTTGTTTTGCCCATGTTTTATATGGAAGCGTCGGAGCTGCGGGATTTCTTATGTTTGGCGAAAGGACTTCGTCTCAGATTACATTGGATCTACCACGAGATGCATTTGCTTCCAAAGTCTCCTTGTGGACTATAATGGATAACATGTCTGTGACATCTTTTGGTACAATTTCAGGGCTAGTGATGGCTTTAATTGGTTCTCTCCTCAGTGTACTTGTGGCAATGGTTTTGCCAGCTTTATGTTTTCTGAAAATTGTGGGGAAAAGGGCTACAAATGCACAGGTTATTCTCAGTGTGGTAATTGCTGCATGGGGAATAGTATGTGCTTCCCTTGGAACATATTCATCTCTAGTAAAGATTGTGCATAGGAGCTGA
Protein sequence

>MsG0780040439.01.T01

MASNNSDRNKEKENEYFLDANEDETDIEAVNYDSDSSNNNNDDDDEDDRIATHRPESFTSQQWPQSYNEALDPLTIAAAPNIGSVLRAPSVIYASLAAGRSSKSYLELQDGFLTGSQIQESTWWEKASIQKNIPEELPIGYGCTFTQTIFNGLNVLAGVGLLSAPDTVKQAGWASLLVIGIFAVVCFYTAELMRHCFQSREGIISYPDIGEAAFGKYGRVFISIVLYTELYVSAAVRPFIFPLLLYTICDNLSGLFPGTSLHWGGLNLDGKHLFAILAALIILPTVWLKDLRFVSYLSAGGVVGTALVGACVYAVGTRKDVGFHHTAPLVNWSGVPFAFGIYGGNQGFLEKVCDRDLDCRIKVVGVFVTVIESTLATFDHDSFCFAHVLYGSVGAAGFLMFGERTSSQITLDLPRDAFASKVSLWTIMDNMSVTSFGTISGLVMALIGSLLSVLVAMVLPALCFLKIVGKRATNAQVILSVVIAAWGIVCASLGTYSSLVKIVHRS*