Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040452.01.T01 | XP_003624975.3 | 89.453 | 256 | 25 | 2 | 13 | 268 | 377 | 630 | 9.82E-161 | 470 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040452.01.T01 | A0A396H7M6 | 89.453 | 256 | 25 | 2 | 13 | 268 | 377 | 630 | 4.69e-161 | 470 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0780040452.01 | MsG0780041456.01 | 0.806100 | 9.689941e-50 | 5.214298e-47 |
| MsG0780040452.01 | MsG0880046122.01 | 0.821408 | 4.102998e-53 | 3.335148e-50 |
| MsG0480022035.01 | MsG0780040452.01 | 0.837924 | 3.899718e-57 | 5.142036e-54 |
| MsG0380015779.01 | MsG0780040452.01 | 0.821816 | 3.302109e-53 | 2.715370e-50 |
| MsG0380018009.01 | MsG0780040452.01 | 0.800593 | 1.340288e-48 | 6.265188e-46 |
| MsG0480018163.01 | MsG0780040452.01 | 0.803501 | 3.383068e-49 | 1.702868e-46 |
| MsG0580029826.01 | MsG0780040452.01 | 0.809452 | 1.879379e-50 | 1.103811e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040452.01.T01 | MTR_7g105980 | 78.302 | 212 | 44 | 2 | 12 | 223 | 70 | 279 | 1.96e-113 | 328 |
| MsG0780040452.01.T01 | MTR_7g105980 | 78.302 | 212 | 44 | 2 | 12 | 223 | 140 | 349 | 2.16e-112 | 328 |
| MsG0780040452.01.T01 | MTR_0176s0050 | 66.537 | 257 | 74 | 4 | 12 | 268 | 197 | 441 | 1.41e-111 | 329 |
| MsG0780040452.01.T01 | MTR_0176s0050 | 66.537 | 257 | 74 | 4 | 12 | 268 | 266 | 510 | 1.36e-110 | 328 |
| MsG0780040452.01.T01 | MTR_0176s0050 | 65.759 | 257 | 70 | 5 | 12 | 268 | 197 | 435 | 1.03e-107 | 318 |
| MsG0780040452.01.T01 | MTR_7g087840 | 64.479 | 259 | 79 | 4 | 12 | 268 | 342 | 589 | 6.40e-106 | 319 |
| MsG0780040452.01.T01 | MTR_6g471290 | 62.454 | 269 | 79 | 3 | 12 | 268 | 707 | 965 | 2.93e-105 | 327 |
| MsG0780040452.01.T01 | MTR_6g471290 | 51.724 | 116 | 51 | 1 | 12 | 127 | 340 | 450 | 2.23e-29 | 117 |
| MsG0780040452.01.T01 | MTR_7g087040 | 63.035 | 257 | 79 | 3 | 12 | 268 | 696 | 936 | 7.48e-100 | 313 |
| MsG0780040452.01.T01 | MTR_7g087040 | 50.000 | 184 | 82 | 4 | 12 | 186 | 342 | 524 | 5.16e-46 | 165 |
| MsG0780040452.01.T01 | MTR_5g024120 | 60.700 | 257 | 31 | 4 | 12 | 268 | 163 | 349 | 2.73e-97 | 289 |
| MsG0780040452.01.T01 | MTR_3g009910 | 58.214 | 280 | 82 | 8 | 8 | 268 | 341 | 604 | 7.73e-97 | 296 |
| MsG0780040452.01.T01 | MTR_7g095350 | 58.527 | 258 | 86 | 6 | 12 | 268 | 350 | 587 | 2.05e-94 | 289 |
| MsG0780040452.01.T01 | MTR_7g095350 | 58.527 | 258 | 86 | 6 | 12 | 268 | 342 | 579 | 2.09e-94 | 289 |
| MsG0780040452.01.T01 | MTR_7g095560 | 56.410 | 273 | 87 | 7 | 12 | 268 | 347 | 603 | 1.52e-93 | 288 |
| MsG0780040452.01.T01 | MTR_6g013240 | 58.647 | 266 | 88 | 7 | 4 | 268 | 401 | 645 | 1.78e-92 | 286 |
| MsG0780040452.01.T01 | MTR_6g013380 | 57.895 | 266 | 90 | 7 | 4 | 268 | 396 | 640 | 2.78e-91 | 283 |
| MsG0780040452.01.T01 | MTR_7g089610 | 94.161 | 137 | 7 | 1 | 13 | 149 | 377 | 512 | 4.66e-87 | 269 |
| MsG0780040452.01.T01 | MTR_6g071510 | 53.659 | 246 | 80 | 5 | 12 | 257 | 321 | 532 | 5.69e-74 | 240 |
| MsG0780040452.01.T01 | MTR_7g089617 | 66.667 | 156 | 45 | 3 | 119 | 268 | 10 | 164 | 3.79e-64 | 198 |
| MsG0780040452.01.T01 | MTR_7g089570 | 89.888 | 89 | 9 | 0 | 12 | 100 | 377 | 465 | 7.15e-47 | 163 |
| MsG0780040452.01.T01 | MTR_7g089620 | 89.773 | 88 | 9 | 0 | 12 | 99 | 357 | 444 | 3.96e-46 | 160 |
| MsG0780040452.01.T01 | MTR_6g071680 | 67.890 | 109 | 25 | 2 | 160 | 268 | 2 | 100 | 5.31e-44 | 144 |
| MsG0780040452.01.T01 | MTR_7g105520 | 69.892 | 93 | 26 | 2 | 57 | 148 | 2 | 93 | 4.84e-37 | 127 |
| MsG0780040452.01.T01 | MTR_6g471300 | 65.347 | 101 | 34 | 1 | 12 | 112 | 133 | 232 | 5.75e-36 | 128 |
| MsG0780040452.01.T01 | MTR_2g064400 | 39.474 | 228 | 114 | 8 | 35 | 259 | 281 | 487 | 6.16e-33 | 125 |
| MsG0780040452.01.T01 | MTR_7g092645 | 62.745 | 102 | 24 | 2 | 160 | 261 | 2 | 89 | 4.43e-32 | 115 |
| MsG0780040452.01.T01 | MTR_4g057860 | 49.565 | 115 | 44 | 2 | 137 | 251 | 1 | 101 | 6.91e-31 | 111 |
| MsG0780040452.01.T01 | MTR_7g092650 | 65.517 | 87 | 30 | 0 | 12 | 98 | 369 | 455 | 2.38e-29 | 115 |
| MsG0780040452.01.T01 | MTR_7g092110 | 49.580 | 119 | 52 | 3 | 104 | 222 | 83 | 193 | 4.44e-28 | 107 |
| MsG0780040452.01.T01 | MTR_7g089590 | 84.314 | 51 | 7 | 1 | 208 | 258 | 1 | 50 | 1.13e-24 | 95.1 |
| MsG0780040452.01.T01 | MTR_7g111100 | 63.750 | 80 | 28 | 1 | 142 | 221 | 80 | 158 | 2.14e-24 | 97.4 |
| MsG0780040452.01.T01 | MTR_2g032920 | 56.667 | 90 | 38 | 1 | 12 | 101 | 263 | 351 | 3.85e-24 | 100 |
| MsG0780040452.01.T01 | MTR_7g095350 | 53.684 | 95 | 42 | 2 | 12 | 106 | 350 | 442 | 3.47e-23 | 98.2 |
| MsG0780040452.01.T01 | MTR_7g095350 | 53.684 | 95 | 42 | 2 | 12 | 106 | 342 | 434 | 3.50e-23 | 98.2 |
| MsG0780040452.01.T01 | MTR_3g009910 | 60.215 | 93 | 34 | 3 | 8 | 99 | 341 | 431 | 5.82e-23 | 97.8 |
| MsG0780040452.01.T01 | MTR_7g095350 | 54.023 | 87 | 39 | 1 | 12 | 98 | 342 | 427 | 3.79e-22 | 95.1 |
| MsG0780040452.01.T01 | MTR_7g095660 | 47.573 | 103 | 31 | 2 | 149 | 251 | 27 | 106 | 4.66e-21 | 87.0 |
| MsG0780040452.01.T01 | MTR_1g115530 | 52.500 | 80 | 24 | 3 | 189 | 268 | 1 | 66 | 4.13e-16 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 41 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGACGATCATTTGCGTCTC+TGG | 0.320274 | 7:-77789044 | None:intergenic |
| CCCGAGGATAATTTCTATTA+CGG | 0.363344 | 7:+77787155 | MsG0780040452.01.T01:CDS |
| ATTTCAAAATCTTAGACAAT+TGG | 0.371551 | 7:+77787472 | MsG0780040452.01.T01:CDS |
| CATGGTGGTTGTTGTTGGTT+TGG | 0.383033 | 7:+77789088 | MsG0780040452.01.T01:CDS |
| CGTACATTGGAGCTGGTAGA+TGG | 0.397174 | 7:+77789020 | MsG0780040452.01.T01:CDS |
| TCATAACGATTTGAAATATG+TGG | 0.408090 | 7:+77788889 | MsG0780040452.01.T01:CDS |
| TCAGATTAGAAATCAACATC+TGG | 0.429590 | 7:+77788811 | MsG0780040452.01.T01:intron |
| TACGGCTCCTAAGTTATTGA+AGG | 0.429863 | 7:+77787173 | MsG0780040452.01.T01:CDS |
| CAGAAAACCTTCAATAACTT+AGG | 0.430857 | 7:-77787180 | None:intergenic |
| TGAAAATAATTGACTGTGGT+TGG | 0.432833 | 7:+77787061 | MsG0780040452.01.T01:CDS |
| GCGGTCATGGTGGTTGTTGT+TGG | 0.441777 | 7:+77789083 | MsG0780040452.01.T01:CDS |
| ACAATTGGAGTTACTTATTG+AGG | 0.448671 | 7:+77787487 | MsG0780040452.01.T01:CDS |
| CAATTGGAGTTACTTATTGA+GGG | 0.454986 | 7:+77787488 | MsG0780040452.01.T01:CDS |
| TAGAGGATTAACGAAGGTCT+TGG | 0.460348 | 7:+77787445 | MsG0780040452.01.T01:CDS |
| GAAAATAATTGACTGTGGTT+GGG | 0.464274 | 7:+77787062 | MsG0780040452.01.T01:CDS |
| ATATGTGATAATCTTGCAAT+CGG | 0.478712 | 7:-77787243 | None:intergenic |
| AGTTAGCTAGTCACTTATTG+AGG | 0.487897 | 7:+77788948 | MsG0780040452.01.T01:CDS |
| CACGTACGGTTGGATTTAAG+AGG | 0.490586 | 7:+77788840 | MsG0780040452.01.T01:CDS |
| CTGGAACATTCACGTACGGT+TGG | 0.522677 | 7:+77788830 | MsG0780040452.01.T01:CDS |
| TATGATCATACTCACTTCAC+AGG | 0.528823 | 7:+77787278 | MsG0780040452.01.T01:CDS |
| TTGAAATATGTGGAATTTCG+TGG | 0.528930 | 7:+77788899 | MsG0780040452.01.T01:CDS |
| GCCGTAATAGAAATTATCCT+CGG | 0.534260 | 7:-77787156 | None:intergenic |
| CGTGACGACAAAGCGTACAT+TGG | 0.534824 | 7:+77789007 | MsG0780040452.01.T01:CDS |
| ATGACGCAACTTTGGACTAT+CGG | 0.545256 | 7:-77787037 | None:intergenic |
| ATAATCTTGCAATCGGATCA+AGG | 0.545507 | 7:-77787236 | None:intergenic |
| GGGAGGGTATGATCCTAGTA+AGG | 0.558046 | 7:+77787508 | MsG0780040452.01.T01:CDS |
| GATGTGAGCACTATATTCAA+AGG | 0.563630 | 7:-77787133 | None:intergenic |
| TGGAGTTACTTATTGAGGGA+GGG | 0.565851 | 7:+77787492 | MsG0780040452.01.T01:CDS |
| GTGGAATTTCGTGGTTGTGT+AGG | 0.569733 | 7:+77788908 | MsG0780040452.01.T01:CDS |
| TTGGAGTTACTTATTGAGGG+AGG | 0.575936 | 7:+77787491 | MsG0780040452.01.T01:CDS |
| GACAAAGCGTACATTGGAGC+TGG | 0.578449 | 7:+77789013 | MsG0780040452.01.T01:CDS |
| TCTGGAATGCAGCTCCGGGA+AGG | 0.589432 | 7:+77787199 | MsG0780040452.01.T01:CDS |
| CCGTAATAGAAATTATCCTC+GGG | 0.598430 | 7:-77787155 | None:intergenic |
| GCATCAATAGCTATCTCAGA+AGG | 0.598480 | 7:-77787096 | None:intergenic |
| ACATCTGGAACATTCACGTA+CGG | 0.634596 | 7:+77788826 | MsG0780040452.01.T01:CDS |
| AATAATTGACTGTGGTTGGG+CGG | 0.644953 | 7:+77787065 | MsG0780040452.01.T01:CDS |
| AATATAGTGCTCACATCCCG+AGG | 0.659930 | 7:+77787139 | MsG0780040452.01.T01:CDS |
| GCAATCGGATCAAGGAGGTG+TGG | 0.670513 | 7:-77787228 | None:intergenic |
| CATTTGAAAATAATTGACTG+TGG | 0.683264 | 7:+77787057 | MsG0780040452.01.T01:CDS |
| CACAGATAGAGGATTAACGA+AGG | 0.721589 | 7:+77787439 | MsG0780040452.01.T01:intron |
| ATCTTGCAATCGGATCAAGG+AGG | 0.811593 | 7:-77787233 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAATTAAAAGAAACAT+AGG | - | Chr7:77787376-77787395 | None:intergenic | 10.0% |
| !! | ACACAAAAAAAAAAAAAAAT+TGG | - | Chr7:77788044-77788063 | None:intergenic | 10.0% |
| !! | ATTAATAAAGATAAGAATTT+CGG | + | Chr7:77788623-77788642 | MsG0780040452.01.T01:intron | 10.0% |
| !! | ATTATAGAAATATTTGTTTA+AGG | - | Chr7:77788583-77788602 | None:intergenic | 10.0% |
| !! | TTATAGAAATATTTGTTTAA+GGG | - | Chr7:77788582-77788601 | None:intergenic | 10.0% |
| !!! | TTATTTTATCTATTTGTTTT+TGG | + | Chr7:77789180-77789199 | MsG0780040452.01.T01:three_prime_UTR | 10.0% |
| !! | TATATACAAACAATAAACAT+GGG | - | Chr7:77787318-77787337 | None:intergenic | 15.0% |
| !! | TTTGTTAAATGTAAAATGAA+AGG | + | Chr7:77788436-77788455 | MsG0780040452.01.T01:intron | 15.0% |
| !!! | ATATAAAAAAATAGGGATTT+TGG | + | Chr7:77788530-77788549 | MsG0780040452.01.T01:intron | 15.0% |
| !!! | GAAAATTTTACAATTTCATT+AGG | - | Chr7:77788757-77788776 | None:intergenic | 15.0% |
| !!! | TTATTCAAACTCTATTTTTT+TGG | + | Chr7:77787598-77787617 | MsG0780040452.01.T01:intron | 15.0% |
| !!! | TTGTTCATTTTTTTTTTAAC+AGG | + | Chr7:77787621-77787640 | MsG0780040452.01.T01:intron | 15.0% |
| !! | AAAATAAATTAAGACTCTGA+TGG | + | Chr7:77788299-77788318 | MsG0780040452.01.T01:intron | 20.0% |
| !! | ATTTCAAAATCTTAGACAAT+TGG | + | Chr7:77787472-77787491 | MsG0780040452.01.T01:CDS | 20.0% |
| !! | CATGTTTATTGTTTGTATAT+AGG | + | Chr7:77787317-77787336 | MsG0780040452.01.T01:intron | 20.0% |
| !! | CTATATACAAACAATAAACA+TGG | - | Chr7:77787319-77787338 | None:intergenic | 20.0% |
| !!! | CATTTTTTTTTTAACAGGAA+TGG | + | Chr7:77787626-77787645 | MsG0780040452.01.T01:intron | 20.0% |
| ! | ATATGTGATAATCTTGCAAT+CGG | - | Chr7:77787246-77787265 | None:intergenic | 25.0% |
| ! | CATTTGAAAATAATTGACTG+TGG | + | Chr7:77787057-77787076 | MsG0780040452.01.T01:CDS | 25.0% |
| !! | AAACAATAAACATGGGTTTT+GGG | - | Chr7:77787311-77787330 | None:intergenic | 25.0% |
| !! | TATTTGTTTAAGGGTATAAC+TGG | - | Chr7:77788573-77788592 | None:intergenic | 25.0% |
| !! | TCATAACGATTTGAAATATG+TGG | + | Chr7:77788889-77788908 | MsG0780040452.01.T01:CDS | 25.0% |
| !! | TTACTGTTAGAGAAAGTTTT+TGG | - | Chr7:77787577-77787596 | None:intergenic | 25.0% |
| !! | TTGGATTTTAGATATTGCAA+TGG | + | Chr7:77787538-77787557 | MsG0780040452.01.T01:CDS | 25.0% |
| ACAATTGGAGTTACTTATTG+AGG | + | Chr7:77787487-77787506 | MsG0780040452.01.T01:CDS | 30.0% | |
| AGCTAACGGTTAATTTATGA+TGG | + | Chr7:77788344-77788363 | MsG0780040452.01.T01:intron | 30.0% | |
| AGGCAAAAAAGAGAATATAC+GGG | + | Chr7:77788860-77788879 | MsG0780040452.01.T01:CDS | 30.0% | |
| ATCCAAAAATAGTCCTTACT+AGG | - | Chr7:77787524-77787543 | None:intergenic | 30.0% | |
| CAATTGGAGTTACTTATTGA+GGG | + | Chr7:77787488-77787507 | MsG0780040452.01.T01:CDS | 30.0% | |
| CAGAAAACCTTCAATAACTT+AGG | - | Chr7:77787183-77787202 | None:intergenic | 30.0% | |
| GAAAATAATTGACTGTGGTT+GGG | + | Chr7:77787062-77787081 | MsG0780040452.01.T01:CDS | 30.0% | |
| GAATGTGTATTGTGTAACAT+AGG | + | Chr7:77788212-77788231 | MsG0780040452.01.T01:intron | 30.0% | |
| GAGGCAAAAAAGAGAATATA+CGG | + | Chr7:77788859-77788878 | MsG0780040452.01.T01:CDS | 30.0% | |
| GTAAGCATAATCTAGTCATT+AGG | + | Chr7:77788010-77788029 | MsG0780040452.01.T01:intron | 30.0% | |
| GTCGTTGAAAACGATAAAAA+TGG | + | Chr7:77788668-77788687 | MsG0780040452.01.T01:intron | 30.0% | |
| TAGTAGCTTATAGCTAAAAC+CGG | + | Chr7:77788375-77788394 | MsG0780040452.01.T01:intron | 30.0% | |
| TCAGATTAGAAATCAACATC+TGG | + | Chr7:77788811-77788830 | MsG0780040452.01.T01:intron | 30.0% | |
| TGAAAATAATTGACTGTGGT+TGG | + | Chr7:77787061-77787080 | MsG0780040452.01.T01:CDS | 30.0% | |
| TTACTATTGTACACAGATAG+AGG | + | Chr7:77787428-77787447 | MsG0780040452.01.T01:intron | 30.0% | |
| TTGAAATATGTGGAATTTCG+TGG | + | Chr7:77788899-77788918 | MsG0780040452.01.T01:CDS | 30.0% | |
| ! | ATCCTAGTAAGGACTATTTT+TGG | + | Chr7:77787519-77787538 | MsG0780040452.01.T01:CDS | 30.0% |
| ! | ATTTTCAAATGACGCAACTT+TGG | - | Chr7:77787048-77787067 | None:intergenic | 30.0% |
| ! | CAAACAATAAACATGGGTTT+TGG | - | Chr7:77787312-77787331 | None:intergenic | 30.0% |
| ! | CTAAGTTATTGAAGGTTTTC+TGG | + | Chr7:77787181-77787200 | MsG0780040452.01.T01:CDS | 30.0% |
| AGTTAGCTAGTCACTTATTG+AGG | + | Chr7:77788948-77788967 | MsG0780040452.01.T01:CDS | 35.0% | |
| ATAATCTTGCAATCGGATCA+AGG | - | Chr7:77787239-77787258 | None:intergenic | 35.0% | |
| CCCGAGGATAATTTCTATTA+CGG | + | Chr7:77787155-77787174 | MsG0780040452.01.T01:CDS | 35.0% | |
| CCGTAATAGAAATTATCCTC+GGG | - | Chr7:77787158-77787177 | None:intergenic | 35.0% | |
| GACTCTGATGGTAAAAATAG+TGG | + | Chr7:77788311-77788330 | MsG0780040452.01.T01:intron | 35.0% | |
| GATGTGAGCACTATATTCAA+AGG | - | Chr7:77787136-77787155 | None:intergenic | 35.0% | |
| GCCGTAATAGAAATTATCCT+CGG | - | Chr7:77787159-77787178 | None:intergenic | 35.0% | |
| GGCAAAAAAGAGAATATACG+GGG | + | Chr7:77788861-77788880 | MsG0780040452.01.T01:CDS | 35.0% | |
| GTGGATAACTGATAAGCTAA+CGG | + | Chr7:77788330-77788349 | MsG0780040452.01.T01:intron | 35.0% | |
| GTGTATTGTGTAACATAGGT+GGG | + | Chr7:77788216-77788235 | MsG0780040452.01.T01:intron | 35.0% | |
| TATGATCATACTCACTTCAC+AGG | + | Chr7:77787278-77787297 | MsG0780040452.01.T01:CDS | 35.0% | |
| TGTATATAGGTTGCCAATCT+CGG | + | Chr7:77787330-77787349 | MsG0780040452.01.T01:intron | 35.0% | |
| TGTGTATTGTGTAACATAGG+TGG | + | Chr7:77788215-77788234 | MsG0780040452.01.T01:intron | 35.0% | |
| TTCTTTGCAATGAACGATAC+AGG | - | Chr7:77788108-77788127 | None:intergenic | 35.0% | |
| AATAATTGACTGTGGTTGGG+CGG | + | Chr7:77787065-77787084 | MsG0780040452.01.T01:CDS | 40.0% | |
| AGTTATAAGTCACCAACCAC+CGG | - | Chr7:77788397-77788416 | None:intergenic | 40.0% | |
| ATGACGCAACTTTGGACTAT+CGG | - | Chr7:77787040-77787059 | None:intergenic | 40.0% | |
| CACAGATAGAGGATTAACGA+AGG | + | Chr7:77787439-77787458 | MsG0780040452.01.T01:intron | 40.0% | |
| GCATCAATAGCTATCTCAGA+AGG | - | Chr7:77787099-77787118 | None:intergenic | 40.0% | |
| TACGGCTCCTAAGTTATTGA+AGG | + | Chr7:77787173-77787192 | MsG0780040452.01.T01:CDS | 40.0% | |
| TAGAGGATTAACGAAGGTCT+TGG | + | Chr7:77787445-77787464 | MsG0780040452.01.T01:CDS | 40.0% | |
| TAGCTTATAGCTAAAACCGG+TGG | + | Chr7:77788378-77788397 | MsG0780040452.01.T01:intron | 40.0% | |
| TGGAGTTACTTATTGAGGGA+GGG | + | Chr7:77787492-77787511 | MsG0780040452.01.T01:CDS | 40.0% | |
| TTATAGCTAAAACCGGTGGT+TGG | + | Chr7:77788382-77788401 | MsG0780040452.01.T01:intron | 40.0% | |
| TTGGAGTTACTTATTGAGGG+AGG | + | Chr7:77787491-77787510 | MsG0780040452.01.T01:CDS | 40.0% | |
| ! | ACATCTGGAACATTCACGTA+CGG | + | Chr7:77788826-77788845 | MsG0780040452.01.T01:CDS | 40.0% |
| ! | CGTAAAGACACTCTTTTCTG+CGG | + | Chr7:77789064-77789083 | MsG0780040452.01.T01:CDS | 40.0% |
| AATATAGTGCTCACATCCCG+AGG | + | Chr7:77787139-77787158 | MsG0780040452.01.T01:CDS | 45.0% | |
| ATCTTGCAATCGGATCAAGG+AGG | - | Chr7:77787236-77787255 | None:intergenic | 45.0% | |
| CACGTACGGTTGGATTTAAG+AGG | + | Chr7:77788840-77788859 | MsG0780040452.01.T01:CDS | 45.0% | |
| GCAATGCACTATTCCGAGAT+TGG | - | Chr7:77787346-77787365 | None:intergenic | 45.0% | |
| GTGGAATTTCGTGGTTGTGT+AGG | + | Chr7:77788908-77788927 | MsG0780040452.01.T01:CDS | 45.0% | |
| ! | CATGGTGGTTGTTGTTGGTT+TGG | + | Chr7:77789088-77789107 | MsG0780040452.01.T01:CDS | 45.0% |
| !! | ATACTATATATAAAAAAATA+GGG | + | Chr7:77788523-77788542 | MsG0780040452.01.T01:intron | 5.0% |
| !! | TATACTATATATAAAAAAAT+AGG | + | Chr7:77788522-77788541 | MsG0780040452.01.T01:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTTGA+GGG | - | Chr7:77787779-77787798 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTTTG+AGG | - | Chr7:77787780-77787799 | None:intergenic | 5.0% |
| ACGACGATCATTTGCGTCTC+TGG | - | Chr7:77789047-77789066 | None:intergenic | 50.0% | |
| CGTACATTGGAGCTGGTAGA+TGG | + | Chr7:77789020-77789039 | MsG0780040452.01.T01:CDS | 50.0% | |
| CGTGACGACAAAGCGTACAT+TGG | + | Chr7:77789007-77789026 | MsG0780040452.01.T01:CDS | 50.0% | |
| CTGGAACATTCACGTACGGT+TGG | + | Chr7:77788830-77788849 | MsG0780040452.01.T01:CDS | 50.0% | |
| GACAAAGCGTACATTGGAGC+TGG | + | Chr7:77789013-77789032 | MsG0780040452.01.T01:CDS | 50.0% | |
| ! | ACTCTTTTCTGCGGTCATGG+TGG | + | Chr7:77789073-77789092 | MsG0780040452.01.T01:CDS | 50.0% |
| ! | AGGTGTGGTGTTTTCCTTCC+CGG | - | Chr7:77787216-77787235 | None:intergenic | 50.0% |
| ! | GACACTCTTTTCTGCGGTCA+TGG | + | Chr7:77789070-77789089 | MsG0780040452.01.T01:CDS | 50.0% |
| ! | GGGAGGGTATGATCCTAGTA+AGG | + | Chr7:77787508-77787527 | MsG0780040452.01.T01:CDS | 50.0% |
| !!! | GGTTTTCTGGAATGCAGCTC+CGG | + | Chr7:77787194-77787213 | MsG0780040452.01.T01:CDS | 50.0% |
| !!! | GTTTTCTGGAATGCAGCTCC+GGG | + | Chr7:77787195-77787214 | MsG0780040452.01.T01:CDS | 50.0% |
| GCAATCGGATCAAGGAGGTG+TGG | - | Chr7:77787231-77787250 | None:intergenic | 55.0% | |
| GCGGTCATGGTGGTTGTTGT+TGG | + | Chr7:77789083-77789102 | MsG0780040452.01.T01:CDS | 55.0% | |
| ! | TCTGGAATGCAGCTCCGGGA+AGG | + | Chr7:77787199-77787218 | MsG0780040452.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 77787009 | 77789216 | 77787009 | ID=MsG0780040452.01;Name=MsG0780040452.01 |
| Chr7 | mRNA | 77787009 | 77789216 | 77787009 | ID=MsG0780040452.01.T01;Parent=MsG0780040452.01;Name=MsG0780040452.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0.5|0.66|1|1|1|3|39|268 |
| Chr7 | exon | 77787009 | 77787303 | 77787009 | ID=MsG0780040452.01.T01:exon:14980;Parent=MsG0780040452.01.T01 |
| Chr7 | exon | 77787444 | 77787592 | 77787444 | ID=MsG0780040452.01.T01:exon:14981;Parent=MsG0780040452.01.T01 |
| Chr7 | exon | 77788815 | 77789216 | 77788815 | ID=MsG0780040452.01.T01:exon:14982;Parent=MsG0780040452.01.T01 |
| Chr7 | CDS | 77787009 | 77787303 | 77787009 | ID=MsG0780040452.01.T01:cds;Parent=MsG0780040452.01.T01 |
| Chr7 | CDS | 77787444 | 77787592 | 77787444 | ID=MsG0780040452.01.T01:cds;Parent=MsG0780040452.01.T01 |
| Chr7 | CDS | 77788815 | 77789177 | 77788815 | ID=MsG0780040452.01.T01:cds;Parent=MsG0780040452.01.T01 |
| Chr7 | three_prime_UTR | 77789178 | 77789216 | 77789178 | ID=MsG0780040452.01.T01:three_prime_utr;Parent=MsG0780040452.01.T01 |
| Gene Sequence |
| Protein sequence |
