AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040595.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040595.01.T01 MTR_7g093450 95.410 610 19 2 1 610 1 601 0.0 1210
MsG0780040595.01.T01 MTR_0136s0010 62.783 575 139 10 27 599 11 512 0.0 710
MsG0780040595.01.T01 MTR_5g059400 62.323 353 132 1 257 608 175 527 4.49e-173 502
MsG0780040595.01.T01 MTR_1g116130 62.323 353 132 1 257 608 175 527 4.49e-173 502
MsG0780040595.01.T01 MTR_5g033800 56.383 376 157 2 222 597 116 484 2.89e-157 461
MsG0780040595.01.T01 MTR_4g121560 54.472 369 163 4 232 598 90 455 2.28e-155 455
MsG0780040595.01.T01 MTR_8g069790 59.064 342 139 1 256 597 177 517 3.06e-153 451
MsG0780040595.01.T01 MTR_4g126950 48.851 348 176 1 253 600 105 450 5.98e-133 397
MsG0780040595.01.T01 MTR_7g109550 43.723 462 236 7 141 600 32 471 6.91e-126 379
MsG0780040595.01.T01 MTR_5g033800 54.244 271 117 2 222 492 116 379 6.36e-103 317
MsG0780040595.01.T01 MTR_7g094750 44.722 360 190 6 257 610 91 447 2.89e-102 318
MsG0780040595.01.T01 MTR_3g464570 40.571 350 184 7 257 597 43 377 1.69e-95 298
MsG0780040595.01.T01 MTR_2g022560 43.466 352 184 6 257 600 97 441 1.23e-94 298
MsG0780040595.01.T01 MTR_1g058380 41.880 351 192 5 257 601 55 399 2.73e-94 296
MsG0780040595.01.T01 MTR_5g071350 40.390 359 180 7 257 597 58 400 3.87e-94 295
MsG0780040595.01.T01 MTR_2g015720 42.274 343 173 6 257 598 42 360 6.17e-94 293
MsG0780040595.01.T01 MTR_1g050448 41.935 341 181 6 256 596 52 375 1.86e-93 292
MsG0780040595.01.T01 MTR_4g087730 40.230 348 184 6 252 598 40 364 5.79e-91 285
MsG0780040595.01.T01 MTR_1g112210 39.247 372 206 7 227 596 29 382 3.64e-90 284
MsG0780040595.01.T01 MTR_1g112210 38.710 372 195 7 227 596 29 369 6.75e-89 280
MsG0780040595.01.T01 MTR_2g091175 40.816 343 178 6 256 597 49 367 7.44e-89 280
MsG0780040595.01.T01 MTR_2g073510 41.935 341 173 7 256 593 32 350 1.25e-86 274
MsG0780040595.01.T01 MTR_4g088030 39.650 343 183 6 257 598 33 352 4.66e-86 272
MsG0780040595.01.T01 MTR_3g021060 38.953 344 182 6 256 596 45 363 2.84e-85 271
MsG0780040595.01.T01 MTR_4g079700 40.351 342 177 7 257 596 47 363 2.10e-84 268
MsG0780040595.01.T01 MTR_3g090120 38.503 374 190 9 244 600 113 463 2.30e-83 269
MsG0780040595.01.T01 MTR_2g073500 40.634 347 171 10 257 597 29 346 1.46e-82 263
MsG0780040595.01.T01 MTR_4g014440 38.504 361 202 8 252 599 57 410 6.02e-82 263
MsG0780040595.01.T01 MTR_3g035830 37.427 342 188 6 257 596 31 348 4.28e-81 259
MsG0780040595.01.T01 MTR_5g034810 38.056 360 197 7 240 597 18 353 2.45e-80 258
MsG0780040595.01.T01 MTR_3g070900 37.216 352 203 7 257 597 106 450 3.63e-80 260
MsG0780040595.01.T01 MTR_8g093530 38.286 350 191 6 254 597 87 417 1.99e-79 258
MsG0780040595.01.T01 MTR_5g082880 36.932 352 207 7 257 597 165 512 2.24e-79 260
MsG0780040595.01.T01 MTR_3g021090 37.047 359 189 8 236 592 21 344 4.58e-79 256
MsG0780040595.01.T01 MTR_3g049330 38.192 343 188 7 257 597 31 351 3.40e-78 252
MsG0780040595.01.T01 MTR_7g070060 38.936 357 194 9 256 597 63 410 3.58e-78 254
MsG0780040595.01.T01 MTR_4g016940 37.607 351 201 8 256 596 85 427 4.29e-78 254
MsG0780040595.01.T01 MTR_3g071650 38.483 356 191 9 257 597 89 431 2.81e-77 252
MsG0780040595.01.T01 MTR_1g111010 38.873 355 169 12 256 601 31 346 1.13e-76 248
MsG0780040595.01.T01 MTR_4g014430 35.062 405 241 9 201 593 49 443 1.61e-74 245
MsG0780040595.01.T01 MTR_8g463790 35.593 354 201 8 257 597 71 410 4.11e-74 243
MsG0780040595.01.T01 MTR_5g083260 37.815 357 192 9 257 597 83 425 3.38e-73 241
MsG0780040595.01.T01 MTR_7g094750 45.570 237 128 1 257 492 91 327 4.07e-69 227
MsG0780040595.01.T01 MTR_3g464570 39.298 285 151 7 321 597 3 273 1.73e-68 224
MsG0780040595.01.T01 MTR_7g068920 37.037 351 203 8 256 596 79 421 3.34e-67 225
MsG0780040595.01.T01 MTR_7g070060 36.964 303 168 8 309 597 15 308 5.01e-55 189
MsG0780040595.01.T01 MTR_6g061710 28.628 503 293 16 122 601 59 518 1.79e-54 194
MsG0780040595.01.T01 MTR_1g076690 29.569 487 256 17 158 602 134 575 2.61e-54 194
MsG0780040595.01.T01 MTR_8g099300 32.873 362 199 13 256 592 73 415 1.05e-52 186
MsG0780040595.01.T01 MTR_7g019120 32.345 371 217 10 256 608 78 432 6.90e-50 179
MsG0780040595.01.T01 MTR_8g104970 30.867 473 246 19 154 592 36 461 3.02e-49 178
MsG0780040595.01.T01 MTR_8g027900 31.319 364 219 11 252 597 206 556 5.66e-49 179
MsG0780040595.01.T01 MTR_5g035080 32.804 378 209 14 257 610 75 431 4.53e-48 174
MsG0780040595.01.T01 MTR_3g109840 32.620 374 206 14 257 606 73 424 8.48e-48 173
MsG0780040595.01.T01 MTR_6g016880 31.429 385 210 13 253 609 74 432 1.60e-47 172
MsG0780040595.01.T01 MTR_5g035150 33.333 366 204 13 257 599 85 433 1.23e-46 170
MsG0780040595.01.T01 MTR_5g035090 32.591 359 203 13 256 592 82 423 4.21e-45 166
MsG0780040595.01.T01 MTR_7g070060 35.950 242 140 5 256 491 63 295 5.58e-45 162
MsG0780040595.01.T01 MTR_5g035070 33.243 370 206 14 257 603 87 438 6.22e-45 166
MsG0780040595.01.T01 MTR_6g016875 30.822 438 237 17 192 596 4 408 1.03e-43 162
MsG0780040595.01.T01 MTR_7g033230 31.967 366 208 14 257 599 264 611 1.62e-43 165
MsG0780040595.01.T01 MTR_7g033230 31.967 366 208 14 257 599 334 681 2.78e-43 165
MsG0780040595.01.T01 MTR_2g016060 30.214 374 202 15 258 599 56 402 6.39e-42 156
MsG0780040595.01.T01 MTR_4g092830 31.373 357 208 15 257 592 48 388 9.38e-42 157
MsG0780040595.01.T01 MTR_4g125060 27.655 452 269 17 162 596 61 471 2.24e-39 150
MsG0780040595.01.T01 MTR_6g007777 30.541 370 206 17 257 600 116 460 2.67e-39 150
MsG0780040595.01.T01 MTR_4g125060 27.617 449 273 15 162 596 100 510 3.49e-39 151
MsG0780040595.01.T01 MTR_4g125060 27.434 452 270 16 162 596 129 539 3.58e-39 151
MsG0780040595.01.T01 MTR_8g093870 29.379 354 222 12 257 596 133 472 6.21e-38 147
MsG0780040595.01.T01 MTR_6g016240 29.620 368 209 15 257 596 71 416 1.07e-37 145
MsG0780040595.01.T01 MTR_5g069320 32.759 290 106 11 321 589 165 386 7.18e-36 139
MsG0780040595.01.T01 MTR_2g022580 46.032 126 65 2 317 440 2 126 3.18e-29 112
MsG0780040595.01.T01 MTR_7g019140 50.000 90 45 0 256 345 78 167 2.32e-27 108
MsG0780040595.01.T01 MTR_3g021150 43.396 106 58 1 454 557 1 106 5.54e-25 100
MsG0780040595.01.T01 MTR_5g035120 46.809 94 50 0 257 350 75 168 4.61e-24 99.8
MsG0780040595.01.T01 MTR_7g029590 40.580 138 60 4 410 536 1 127 7.22e-24 100
MsG0780040595.01.T01 MTR_5g035140 30.159 252 148 11 362 592 17 261 7.51e-18 84.3
MsG0780040595.01.T01 MTR_0929s0010 43.421 76 36 1 238 306 53 128 2.92e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040595.01.T01 AT5G06700 55.134 633 233 7 2 610 3 608 0.0 669
MsG0780040595.01.T01 AT3G12060 54.515 598 208 10 3 599 4 538 0.0 630
MsG0780040595.01.T01 AT1G60790 55.402 361 158 2 240 597 173 533 2.49e-152 450
MsG0780040595.01.T01 AT5G49340 55.014 349 155 2 252 598 95 443 2.07e-145 429
MsG0780040595.01.T01 AT5G20590 48.718 351 177 2 250 599 134 482 4.07e-133 399
MsG0780040595.01.T01 AT3G62390 42.857 448 221 10 158 599 56 474 2.15e-123 373
MsG0780040595.01.T01 AT5G19160 44.658 365 188 5 246 600 88 448 4.49e-103 320
MsG0780040595.01.T01 AT3G06080 44.134 358 189 4 250 600 96 449 3.77e-101 315
MsG0780040595.01.T01 AT5G06230 41.783 359 193 5 256 604 20 372 7.25e-92 288
MsG0780040595.01.T01 AT1G29050 37.760 384 209 7 216 598 26 380 7.27e-92 288
MsG0780040595.01.T01 AT5G06230 41.783 359 193 5 256 604 61 413 1.97e-91 288
MsG0780040595.01.T01 AT1G48880 40.166 361 181 8 242 592 100 435 4.46e-89 283
MsG0780040595.01.T01 AT2G34070 36.898 374 211 5 227 598 35 385 4.97e-89 281
MsG0780040595.01.T01 AT3G11570 41.071 336 188 5 273 604 98 427 4.13e-87 278
MsG0780040595.01.T01 AT1G78710 38.736 364 191 9 236 597 24 357 4.64e-87 275
MsG0780040595.01.T01 AT5G58600 38.571 350 192 9 257 597 66 401 3.61e-86 274
MsG0780040595.01.T01 AT5G20590 47.951 244 126 1 250 492 134 377 5.08e-86 273
MsG0780040595.01.T01 AT2G42570 38.372 344 186 6 256 597 46 365 5.68e-85 270
MsG0780040595.01.T01 AT2G31110 35.904 376 217 7 222 596 10 362 1.10e-84 269
MsG0780040595.01.T01 AT2G30010 39.045 356 188 9 257 597 56 397 7.20e-84 268
MsG0780040595.01.T01 AT2G30010 39.045 356 188 9 257 597 99 440 7.97e-84 270
MsG0780040595.01.T01 AT2G40160 36.592 358 206 8 257 600 77 427 1.12e-83 269
MsG0780040595.01.T01 AT3G62390 39.665 358 188 6 158 510 56 390 6.60e-83 266
MsG0780040595.01.T01 AT2G40160 36.286 350 202 8 257 592 77 419 3.60e-82 265
MsG0780040595.01.T01 AT3G54260 38.728 346 186 8 257 597 51 375 3.63e-82 263
MsG0780040595.01.T01 AT2G30900 38.551 345 187 6 257 597 43 366 2.45e-81 261
MsG0780040595.01.T01 AT1G73140 38.764 356 198 9 257 603 67 411 1.37e-80 260
MsG0780040595.01.T01 AT5G01620 38.506 348 194 8 256 593 109 446 5.90e-79 257
MsG0780040595.01.T01 AT5G01620 38.506 348 194 8 256 593 109 446 5.90e-79 257
MsG0780040595.01.T01 AT5G01620 38.506 348 194 8 256 593 117 454 1.06e-78 256
MsG0780040595.01.T01 AT2G40150 35.734 361 208 7 256 599 70 423 2.95e-78 254
MsG0780040595.01.T01 AT3G55990 36.338 355 208 7 256 599 139 486 7.73e-78 255
MsG0780040595.01.T01 AT3G14850 37.791 344 191 7 252 593 29 351 7.64e-77 248
MsG0780040595.01.T01 AT5G01360 35.328 351 210 7 256 596 35 378 1.52e-74 243
MsG0780040595.01.T01 AT5G01360 35.328 351 210 7 256 596 91 434 5.62e-74 243
MsG0780040595.01.T01 AT5G19160 42.066 271 143 2 223 492 78 335 1.85e-72 237
MsG0780040595.01.T01 AT3G11030 37.006 354 200 9 257 597 106 449 2.17e-72 240
MsG0780040595.01.T01 AT2G38320 35.574 357 206 10 256 597 58 405 2.55e-72 238
MsG0780040595.01.T01 AT2G40320 36.467 351 205 8 257 597 81 423 1.57e-71 237
MsG0780040595.01.T01 AT3G06080 43.852 244 136 1 250 492 96 339 7.58e-67 222
MsG0780040595.01.T01 AT2G38320 34.441 331 194 9 281 597 1 322 1.85e-62 209
MsG0780040595.01.T01 AT2G34070 36.131 274 150 5 327 598 1 251 4.44e-59 198
MsG0780040595.01.T01 AT1G78710 32.782 363 161 10 236 597 17 297 3.79e-57 194
MsG0780040595.01.T01 AT5G58600 37.131 237 134 4 257 491 66 289 4.45e-56 191
MsG0780040595.01.T01 AT5G06230 38.710 248 145 2 256 496 61 308 6.33e-55 189
MsG0780040595.01.T01 AT1G01430 32.143 420 248 13 203 600 47 451 8.83e-55 193
MsG0780040595.01.T01 AT2G31110 34.717 265 160 4 222 486 10 261 3.70e-54 186
MsG0780040595.01.T01 AT1G70230 35.475 358 193 14 257 599 79 413 4.72e-53 187
MsG0780040595.01.T01 AT4G25360 30.400 375 214 11 256 602 174 529 5.41e-52 187
MsG0780040595.01.T01 AT4G25360 30.400 375 214 11 256 602 174 529 5.41e-52 187
MsG0780040595.01.T01 AT5G51640 30.469 384 219 11 256 610 137 501 1.16e-51 186
MsG0780040595.01.T01 AT2G40160 33.610 241 147 5 257 491 77 310 1.23e-50 177
MsG0780040595.01.T01 AT2G30900 37.662 231 131 4 257 486 43 261 1.65e-50 176
MsG0780040595.01.T01 AT4G23790 32.703 370 202 14 256 597 78 428 7.06e-49 176
MsG0780040595.01.T01 AT5G64470 31.921 354 216 14 257 598 55 395 7.77e-49 175
MsG0780040595.01.T01 AT4G11090 32.877 365 196 12 256 592 78 421 4.33e-48 174
MsG0780040595.01.T01 AT3G14850 35.316 269 151 7 327 593 1 248 1.26e-47 167
MsG0780040595.01.T01 AT5G64470 31.579 361 214 16 257 598 55 401 1.28e-47 172
MsG0780040595.01.T01 AT4G01080 31.667 360 216 11 256 600 90 434 2.60e-47 172
MsG0780040595.01.T01 AT3G28150 31.880 367 209 11 256 602 69 414 7.23e-47 170
MsG0780040595.01.T01 AT2G31110 35.874 223 126 6 375 596 8 214 4.15e-46 162
MsG0780040595.01.T01 AT5G15900 32.603 365 206 14 257 600 67 412 3.82e-45 166
MsG0780040595.01.T01 AT5G15890 27.459 488 287 14 144 592 59 518 4.77e-45 168
MsG0780040595.01.T01 AT5G15900 32.603 365 206 14 257 600 86 431 4.92e-45 166
MsG0780040595.01.T01 AT3G02440 31.707 369 208 12 257 602 127 474 1.11e-42 160
MsG0780040595.01.T01 AT3G02440 31.707 369 208 12 257 602 135 482 1.27e-42 160
MsG0780040595.01.T01 AT2G14530 29.863 365 211 12 257 596 62 406 3.18e-42 157
MsG0780040595.01.T01 AT5G64020 27.731 357 236 12 257 596 57 408 3.75e-38 146
MsG0780040595.01.T01 AT5G20680 28.045 353 228 11 257 596 118 457 8.95e-36 140
MsG0780040595.01.T01 AT5G20680 28.045 353 228 11 257 596 194 533 1.17e-35 141
MsG0780040595.01.T01 AT5G20680 28.045 353 228 11 257 596 212 551 1.42e-35 141
MsG0780040595.01.T01 AT5G20680 28.045 353 228 11 257 596 212 551 1.42e-35 141
MsG0780040595.01.T01 AT5G20680 28.045 353 228 11 257 596 212 551 1.42e-35 141
MsG0780040595.01.T01 AT5G20680 28.045 353 228 11 257 596 212 551 1.42e-35 141
MsG0780040595.01.T01 AT5G64470 31.250 272 170 11 257 518 55 319 1.70e-31 125
MsG0780040595.01.T01 AT5G64470 32.296 257 157 11 257 503 55 304 2.18e-31 124
MsG0780040595.01.T01 AT2G37720 26.989 352 233 11 257 596 143 482 4.45e-30 124

Find 126 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTATTCATTTGTATTTA+AGG 0.026700 7:-79712322 MsG0780040595.01.T01:intron
TGAATATGATGCAGTTATTT+TGG 0.146183 7:+79713812 None:intergenic
ACAATAGCAATCAGCCTTTC+AGG 0.167095 7:+79710489 None:intergenic
GCTATTCTGCTTCCCATTTC+AGG 0.198403 7:-79711709 MsG0780040595.01.T01:intron
CATTTGCACTTTACCTGAAA+TGG 0.238761 7:+79711696 None:intergenic
TGCAGTCATTGGTGCCTTCC+TGG 0.250995 7:-79710857 MsG0780040595.01.T01:CDS
TCAGAACTCAAATTCTTGTT+AGG 0.259301 7:+79713036 None:intergenic
AAGAGGCTTCCCCTCTAAAA+TGG 0.286161 7:+79712340 None:intergenic
CTGTCATCCTCGTGATATTC+AGG 0.292947 7:+79710966 None:intergenic
TATTTCTGATAATCTTTATC+AGG 0.295300 7:+79712799 None:intergenic
AAGTTGAACTACTACTTTCA+TGG 0.298361 7:-79713694 MsG0780040595.01.T01:exon
AAGATTATCAGAAATATAAA+TGG 0.301711 7:-79712792 MsG0780040595.01.T01:CDS
CGTAGACATGGCTACCTTCT+TGG 0.305212 7:+79711834 None:intergenic
ATTTGAGTTCTTTATAGCTT+TGG 0.320098 7:+79713098 None:intergenic
TTCTCCAGCACCCTCATCTT+AGG 0.338480 7:+79711022 None:intergenic
CTATTTCAACTTGAACTGAT+TGG 0.347240 7:+79710705 None:intergenic
AAGTCCATAGTCTTGTTTAG+AGG 0.347400 7:-79711731 MsG0780040595.01.T01:CDS
CTTAAATACAAATGAATAAG+AGG 0.350601 7:+79712323 None:intergenic
TGCAGTCTTGGAATCTCAAC+GGG 0.359692 7:+79710876 None:intergenic
TATCAATGGGCGCAGTTTCA+TGG 0.359918 7:+79711071 None:intergenic
GATATCATTGTCTTCAATAC+TGG 0.368321 7:-79712060 MsG0780040595.01.T01:CDS
GAGGAGAGAAGAGAATATTA+TGG 0.369603 7:-79710569 MsG0780040595.01.T01:three_prime_UTR
CAACAAATATGCAGAGTTGA+TGG 0.374691 7:-79712944 MsG0780040595.01.T01:CDS
TTGTTGGTGATTCTCTCAAT+AGG 0.379512 7:-79712443 MsG0780040595.01.T01:CDS
CAGTTCAATTGTATTAGAAA+TGG 0.385843 7:-79712826 MsG0780040595.01.T01:CDS
AAATTCTTGTTAGGGATAGT+TGG 0.386032 7:+79713045 None:intergenic
ATAGCCTCTAAACAAGACTA+TGG 0.392621 7:+79711727 None:intergenic
TTAGTAGTTCCTACTCCTAT+AGG 0.393314 7:+79713651 None:intergenic
ATTGTAAATCTCTAATCAAC+TGG 0.394347 7:-79710471 MsG0780040595.01.T01:three_prime_UTR
AGAATTTCATTCCACGCATC+AGG 0.404868 7:+79710830 None:intergenic
CAGTGGTGGACAATGGAATT+CGG 0.407795 7:-79711107 MsG0780040595.01.T01:CDS
CTTGGAATTGGTGTTTGAAC+AGG 0.415758 7:+79713213 None:intergenic
TCTTAGGCGGGTACTCTGTT+AGG 0.418648 7:+79711038 None:intergenic
ATTGGTGTTTGAACAGGAAC+AGG 0.425588 7:+79713219 None:intergenic
GGCACCAATGACTGCAGTCT+TGG 0.426478 7:+79710864 None:intergenic
GTCTAGTTTGTGTAAGTTGT+TGG 0.428884 7:+79713614 None:intergenic
CCCAAGTTGTTATAGCTCTT+CGG 0.429231 7:+79711786 None:intergenic
AAGAAAGTTTATGAAGCAAA+TGG 0.436779 7:-79712369 MsG0780040595.01.T01:CDS
AAGTAGTAGTTCAACTTTGA+AGG 0.438849 7:+79713700 None:intergenic
TAGGTACTTCTCGTTATCAA+TGG 0.440581 7:+79711057 None:intergenic
TCCCACTCTTGAACTAAGAA+TGG 0.443337 7:+79712165 None:intergenic
CTCATGATAAAACTTCTAAA+GGG 0.448781 7:-79712026 MsG0780040595.01.T01:intron
GCATCAGCAGAAGAGATCAT+AGG 0.453072 7:-79710771 MsG0780040595.01.T01:exon
CTTGGAAGGCTGCAACCCTT+AGG 0.453939 7:+79712766 None:intergenic
GATTCCAAGACTGCAGTCAT+TGG 0.456998 7:-79710868 MsG0780040595.01.T01:CDS
ACTCATGATAAAACTTCTAA+AGG 0.457588 7:-79712027 MsG0780040595.01.T01:CDS
GTTTGAACAGGAACAGGAAC+AGG 0.462874 7:+79713225 None:intergenic
CAGAACTCAAATTCTTGTTA+GGG 0.463399 7:+79713037 None:intergenic
ACAACCAAGTATGTTCCTAT+AGG 0.469081 7:-79713666 MsG0780040595.01.T01:CDS
AGGTACTTCTCGTTATCAAT+GGG 0.469131 7:+79711058 None:intergenic
ATTTGCACTTTACCTGAAAT+GGG 0.470384 7:+79711697 None:intergenic
TTTGTTGAGAGGCAAGAGAT+TGG 0.476914 7:-79712469 MsG0780040595.01.T01:CDS
GAAATATAAATGGAAACCTA+AGG 0.478515 7:-79712782 MsG0780040595.01.T01:CDS
ATTCTCTCAATAGGAATATG+TGG 0.479362 7:-79712434 MsG0780040595.01.T01:CDS
ACGGTCACCCCTCGATATAC+CGG 0.482085 7:-79710931 MsG0780040595.01.T01:CDS
CACAATCTGTGAAGTGGTGT+TGG 0.482346 7:+79713170 None:intergenic
ATTACACAGCTTCACTTGCT+AGG 0.482509 7:-79712984 MsG0780040595.01.T01:CDS
CTTTATAGCTTTGGTTTCAT+CGG 0.486363 7:+79713107 None:intergenic
CAAGAACCTGGTTTATAAAG+AGG 0.488101 7:+79712865 None:intergenic
GTGATATTCAGGTAGGATAC+AGG 0.492374 7:+79710977 None:intergenic
ACGCTTCGTCTTGATTTAGT+TGG 0.494923 7:-79712111 MsG0780040595.01.T01:CDS
GGTGTTGTGGTGGAAATTGT+TGG 0.495635 7:+79713483 None:intergenic
AGTTCTGATTCTTCATTGAA+AGG 0.499613 7:-79713021 MsG0780040595.01.T01:CDS
TCCGAAGAGCTATAACAACT+TGG 0.501825 7:-79711787 MsG0780040595.01.T01:CDS
AAATGATGAAGATGAGAGAT+GGG 0.509701 7:+79713739 None:intergenic
TACTCCTATAGGAACATACT+TGG 0.509826 7:+79713662 None:intergenic
CTATAACAACTTGGGGTAGG+TGG 0.511798 7:-79711778 MsG0780040595.01.T01:CDS
AATTAAGAGATGTGGTTACC+TGG 0.517044 7:-79710593 MsG0780040595.01.T01:three_prime_UTR
GTGTGATTTGTGACTAAAGA+TGG 0.517197 7:+79713138 None:intergenic
AATTGAGAAGTAGAAGAAGA+AGG 0.518373 7:+79713462 None:intergenic
CCGAAGAGCTATAACAACTT+GGG 0.520685 7:-79711786 MsG0780040595.01.T01:CDS
AACAAGACTATGGACTTGGT+TGG 0.522372 7:+79711737 None:intergenic
CCCGCCTAAGATGAGGGTGC+TGG 0.524275 7:-79711026 MsG0780040595.01.T01:CDS
AGTAGTAGTTCAACTTTGAA+GGG 0.527072 7:+79713701 None:intergenic
CTAAGGGTTGCAGCCTTCCA+AGG 0.532158 7:-79712765 MsG0780040595.01.T01:intron
AGTGGTGGACAATGGAATTC+GGG 0.533025 7:-79711106 MsG0780040595.01.T01:CDS
TCTTATCCTCTTTATAAACC+AGG 0.534497 7:-79712871 MsG0780040595.01.T01:CDS
GAAATGATGAAGATGAGAGA+TGG 0.540754 7:+79713738 None:intergenic
TCTTCTGCTGATGCTTATCT+CGG 0.542278 7:+79710780 None:intergenic
TCCAGCACCCTCATCTTAGG+CGG 0.543139 7:+79711025 None:intergenic
TTTAATGCAGTGGTGGACAA+TGG 0.545585 7:-79711114 MsG0780040595.01.T01:intron
AGAAGAAGAAGGTGTTGTGG+TGG 0.546115 7:+79713473 None:intergenic
CACCATTCTTAGTTCAAGAG+TGG 0.548350 7:-79712167 MsG0780040595.01.T01:CDS
AGGAAGGACTATTACCAAGA+AGG 0.548521 7:-79711848 MsG0780040595.01.T01:CDS
AGAATGCTTGATTTGTTGAG+AGG 0.553381 7:-79712480 MsG0780040595.01.T01:CDS
CGATGAATTGAATGTTCTTG+AGG 0.560269 7:-79711813 MsG0780040595.01.T01:CDS
ACCATTCTTAGTTCAAGAGT+GGG 0.562123 7:-79712166 MsG0780040595.01.T01:CDS
GGAACTACTAATAATACTAC+TGG 0.564960 7:-79713639 MsG0780040595.01.T01:CDS
TCAATTATTGAACAAGAACC+TGG 0.565676 7:+79712853 None:intergenic
TATTGAGATGAGCTGTTCCA+CGG 0.566478 7:-79710424 MsG0780040595.01.T01:three_prime_UTR
ATGAGATTGAGAAGTTGCAT+TGG 0.566578 7:+79713320 None:intergenic
TTCCTGGTGTTCCTGATGCG+TGG 0.566916 7:-79710841 MsG0780040595.01.T01:CDS
TTGTCTTCAATACTGGCCAC+TGG 0.567532 7:-79712053 MsG0780040595.01.T01:CDS
GAGCTATAACAACTTGGGGT+AGG 0.571905 7:-79711781 MsG0780040595.01.T01:CDS
CCAGCACCCTCATCTTAGGC+GGG 0.574801 7:+79711026 None:intergenic
TATTCTCTTCTCTCCTCACC+AGG 0.579132 7:+79710575 None:intergenic
CATTCAATTCATCGTAGACA+TGG 0.579213 7:+79711822 None:intergenic
CTGCAGTCTTGGAATCTCAA+CGG 0.582121 7:+79710875 None:intergenic
GACAAAGATAGAAAATGAAG+TGG 0.582327 7:+79713773 None:intergenic
GATATAATGTATAAGTGAGG+TGG 0.585769 7:+79710727 None:intergenic
CAGAGTACCCGCCTAAGATG+AGG 0.590274 7:-79711033 MsG0780040595.01.T01:CDS
AGAGATGTGGTTACCTGGTG+AGG 0.595301 7:-79710588 MsG0780040595.01.T01:three_prime_UTR
AGTAGAAGAAGAAGGTGTTG+TGG 0.595942 7:+79713470 None:intergenic
AAGTATGTTCCTATAGGAGT+AGG 0.596005 7:-79713660 MsG0780040595.01.T01:CDS
TATAACAACTTGGGGTAGGT+GGG 0.598986 7:-79711777 MsG0780040595.01.T01:CDS
AGAGTACCCGCCTAAGATGA+GGG 0.602147 7:-79711032 MsG0780040595.01.T01:CDS
AAATATAAATGGAAACCTAA+GGG 0.602347 7:-79712781 MsG0780040595.01.T01:CDS
TCTAAACAAGACTATGGACT+TGG 0.603081 7:+79711733 None:intergenic
TCTTCAATACTGGCCACTGG+TGG 0.603633 7:-79712050 MsG0780040595.01.T01:CDS
CATCCTCGTGATATTCAGGT+AGG 0.603802 7:+79710970 None:intergenic
TTCTCTCAATAGGAATATGT+GGG 0.605396 7:-79712433 MsG0780040595.01.T01:CDS
ACAGAATTAGATACCTTGGA+AGG 0.608146 7:+79712752 None:intergenic
CGAAGAGCTATAACAACTTG+GGG 0.615761 7:-79711785 MsG0780040595.01.T01:CDS
GTGGTGGAAATTGTTGGAGA+AGG 0.616261 7:+79713489 None:intergenic
GTAGGATTATCACTTCTCTG+TGG 0.617774 7:-79712202 MsG0780040595.01.T01:intron
ATATATATAATTAAGAGATG+TGG 0.626005 7:-79710601 MsG0780040595.01.T01:three_prime_UTR
TTCCACGCATCAGGAACACC+AGG 0.632725 7:+79710839 None:intergenic
CTTGCTAGGAAACAGAACAA+TGG 0.648916 7:-79712970 MsG0780040595.01.T01:CDS
AAAAGGATGAACAAGATCAG+TGG 0.649933 7:+79713380 None:intergenic
GGTGGACAATGGAATTCGGG+TGG 0.657454 7:-79711103 MsG0780040595.01.T01:CDS
ACGCATCAGGAACACCAGGA+AGG 0.667233 7:+79710843 None:intergenic
TTTGCTTCCGGTATATCGAG+GGG 0.679052 7:+79710924 None:intergenic
GAAAATGAAGATACAAAACA+AGG 0.691798 7:+79710519 None:intergenic
TTGGATATAATGTATAAGTG+AGG 0.701408 7:+79710724 None:intergenic
TATCCTACCTGAATATCACG+AGG 0.721350 7:-79710973 MsG0780040595.01.T01:CDS
GCAGTCTTGGAATCTCAACG+GGG 0.793976 7:+79710877 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGATTATCAGAAATATAAA+TGG - Chr7:79711474-79711493 MsG0780040595.01.T01:intron 15.0%
!! ATATATATAATTAAGAGATG+TGG - Chr7:79713665-79713684 MsG0780040595.01.T01:CDS 15.0%
!!! ATTTTGTAGTTTACTATAAT+TGG - Chr7:79711699-79711718 MsG0780040595.01.T01:intron 15.0%
!!! TAATTTTCATAGGTTAATTT+GGG - Chr7:79711662-79711681 MsG0780040595.01.T01:intron 15.0%
!!! TTAACCTTTTTAAGAAAAAT+AGG + Chr7:79713628-79713647 None:intergenic 15.0%
!!! TTAATTTTCATAGGTTAATT+TGG - Chr7:79711661-79711680 MsG0780040595.01.T01:intron 15.0%
!!! TTTTAAGAAAAATAGGAAAA+AGG + Chr7:79713621-79713640 None:intergenic 15.0%
!!! TTTTCCTATTTTTCTTAAAA+AGG - Chr7:79713621-79713640 MsG0780040595.01.T01:CDS 15.0%
!!! TTTTGTAGTTTACTATAATT+GGG - Chr7:79711700-79711719 MsG0780040595.01.T01:intron 15.0%
!! AAATATAAATGGAAACCTAA+GGG - Chr7:79711485-79711504 MsG0780040595.01.T01:intron 20.0%
!! AATAACCATAAACAGAAAAT+GGG + Chr7:79712306-79712325 None:intergenic 20.0%
!! ATCAAAATGACAAATAAAAG+TGG - Chr7:79712951-79712970 MsG0780040595.01.T01:CDS 20.0%
!! CTCTTATTCATTTGTATTTA+AGG - Chr7:79711944-79711963 MsG0780040595.01.T01:intron 20.0%
!! CTTAAATACAAATGAATAAG+AGG + Chr7:79711946-79711965 None:intergenic 20.0%
!! CTTAATTAACATTCATAACA+AGG + Chr7:79712380-79712399 None:intergenic 20.0%
!! TAATAACCATAAACAGAAAA+TGG + Chr7:79712307-79712326 None:intergenic 20.0%
!! TTATGAATGTTAATTAAGTC+TGG - Chr7:79712382-79712401 MsG0780040595.01.T01:CDS 20.0%
!!! AAAGGCATTTTTTTTTTGTA+TGG + Chr7:79713603-79713622 None:intergenic 20.0%
!!! ATAAGATTTTGTTCACAATT+CGG + Chr7:79712802-79712821 None:intergenic 20.0%
!!! ATAGAAGTGTTATTTTGAAA+TGG + Chr7:79710915-79710934 None:intergenic 20.0%
!!! TATTTCTGATAATCTTTATC+AGG + Chr7:79711470-79711489 None:intergenic 20.0%
!!! TGGAAAAAAGTATGAAAAAA+TGG + Chr7:79710835-79710854 None:intergenic 20.0%
!!! TTATTTTGAAATGGATCAAA+AGG + Chr7:79710906-79710925 None:intergenic 20.0%
! AAATGACAAATAAAAGTGGT+TGG - Chr7:79712955-79712974 MsG0780040595.01.T01:CDS 25.0%
! AAGAAAGTTTATGAAGCAAA+TGG - Chr7:79711897-79711916 MsG0780040595.01.T01:intron 25.0%
! ACCAAATAACCAATATCATT+AGG + Chr7:79712027-79712046 None:intergenic 25.0%
! ACTCATGATAAAACTTCTAA+AGG - Chr7:79712239-79712258 MsG0780040595.01.T01:intron 25.0%
! ATTGTAAATCTCTAATCAAC+TGG - Chr7:79713795-79713814 MsG0780040595.01.T01:five_prime_UTR 25.0%
! CAGTTCAATTGTATTAGAAA+TGG - Chr7:79711440-79711459 MsG0780040595.01.T01:intron 25.0%
! CTCATGATAAAACTTCTAAA+GGG - Chr7:79712240-79712259 MsG0780040595.01.T01:intron 25.0%
! CTGCATTAAAATAAAAACGA+TGG + Chr7:79713142-79713161 None:intergenic 25.0%
! GAAAATGAAGATACAAAACA+AGG + Chr7:79713750-79713769 None:intergenic 25.0%
! GAAATATAAATGGAAACCTA+AGG - Chr7:79711484-79711503 MsG0780040595.01.T01:intron 25.0%
! GTTATTTAGTTGTGAAAAAG+TGG + Chr7:79710865-79710884 None:intergenic 25.0%
! TTAAACAGAATTAGATACCT+TGG + Chr7:79711521-79711540 None:intergenic 25.0%
! TTGCATATGACATATCATAT+CGG + Chr7:79712901-79712920 None:intergenic 25.0%
! TTGGATATAATGTATAAGTG+AGG + Chr7:79713545-79713564 None:intergenic 25.0%
!! ATGATATTGGTTATTTGGTT+TGG - Chr7:79712028-79712047 MsG0780040595.01.T01:CDS 25.0%
!! ATTTGAGTTCTTTATAGCTT+TGG + Chr7:79711171-79711190 None:intergenic 25.0%
!! TACTCTTTTCCTAATGATAT+TGG - Chr7:79712015-79712034 MsG0780040595.01.T01:intron 25.0%
!! TCCTAATGATATTGGTTATT+TGG - Chr7:79712023-79712042 MsG0780040595.01.T01:intron 25.0%
!! TGAATATGATGCAGTTATTT+TGG + Chr7:79710457-79710476 None:intergenic 25.0%
!! TGGGTTTTCTTAATTTTCAT+AGG - Chr7:79711652-79711671 MsG0780040595.01.T01:intron 25.0%
!!! AAGATTTGTCTTATTTGTGT+TGG - Chr7:79711632-79711651 MsG0780040595.01.T01:intron 25.0%
!!! AGATTTGTCTTATTTGTGTT+GGG - Chr7:79711633-79711652 MsG0780040595.01.T01:intron 25.0%
!!! AGTAGTTTTAGTTTTGAGAA+TGG + Chr7:79710694-79710713 None:intergenic 25.0%
!!! ATAGTTTTTTGACTTGTGTT+TGG + Chr7:79710975-79710994 None:intergenic 25.0%
!!! ATGAAGTGTGATTTTTTTGA+TGG - Chr7:79711353-79711372 MsG0780040595.01.T01:intron 25.0%
!!! ATGTTTTTATAGCATATCAC+TGG + Chr7:79712875-79712894 None:intergenic 25.0%
!!! ATTGAAGTATTGTTTTTGCT+TGG + Chr7:79711074-79711093 None:intergenic 25.0%
!!! TCGTTTTTATTTTAATGCAG+TGG - Chr7:79713142-79713161 MsG0780040595.01.T01:CDS 25.0%
!!! TGATTTTTTTGATGGAGAAT+GGG - Chr7:79711361-79711380 MsG0780040595.01.T01:intron 25.0%
!!! TTTTTATTTTAATGCAGTGG+TGG - Chr7:79713145-79713164 MsG0780040595.01.T01:CDS 25.0%
AAATGATGAAGATGAGAGAT+GGG + Chr7:79710530-79710549 None:intergenic 30.0%
AAATGCATGACAACTCTTAT+TGG - Chr7:79713059-79713078 MsG0780040595.01.T01:CDS 30.0%
AAATTCTTGTTAGGGATAGT+TGG + Chr7:79711224-79711243 None:intergenic 30.0%
AAGAAATGCATTCTCATCTT+GGG + Chr7:79712665-79712684 None:intergenic 30.0%
AAGTAGTAGTTCAACTTTGA+AGG + Chr7:79710569-79710588 None:intergenic 30.0%
AAGTTGAACTACTACTTTCA+TGG - Chr7:79710572-79710591 MsG0780040595.01.T01:three_prime_UTR 30.0%
AATTGAGAAGTAGAAGAAGA+AGG + Chr7:79710807-79710826 None:intergenic 30.0%
AGTAGTAGTTCAACTTTGAA+GGG + Chr7:79710568-79710587 None:intergenic 30.0%
ATTCTCTCAATAGGAATATG+TGG - Chr7:79711832-79711851 MsG0780040595.01.T01:CDS 30.0%
ATTTAGTTGTGAAAAAGTGG+TGG + Chr7:79710862-79710881 None:intergenic 30.0%
ATTTGCACTTTACCTGAAAT+GGG + Chr7:79712572-79712591 None:intergenic 30.0%
CAGAACTCAAATTCTTGTTA+GGG + Chr7:79711232-79711251 None:intergenic 30.0%
CTATTTCAACTTGAACTGAT+TGG + Chr7:79713564-79713583 None:intergenic 30.0%
GACAAAGATAGAAAATGAAG+TGG + Chr7:79710496-79710515 None:intergenic 30.0%
GATATAATGTATAAGTGAGG+TGG + Chr7:79713542-79713561 None:intergenic 30.0%
GATATCATTGTCTTCAATAC+TGG - Chr7:79712206-79712225 MsG0780040595.01.T01:intron 30.0%
GGAACTACTAATAATACTAC+TGG - Chr7:79710627-79710646 MsG0780040595.01.T01:three_prime_UTR 30.0%
GGTTTCACATTCATTACTAT+TGG - Chr7:79712616-79712635 MsG0780040595.01.T01:intron 30.0%
TCAATTATTGAACAAGAACC+TGG + Chr7:79711416-79711435 None:intergenic 30.0%
TCAGAACTCAAATTCTTGTT+AGG + Chr7:79711233-79711252 None:intergenic 30.0%
TCTTATCCTCTTTATAAACC+AGG - Chr7:79711395-79711414 MsG0780040595.01.T01:intron 30.0%
TGATAAAAATGGGACAAAGA+AGG - Chr7:79712130-79712149 MsG0780040595.01.T01:CDS 30.0%
TGATAGCAAATTTGCAATTG+AGG - Chr7:79712280-79712299 MsG0780040595.01.T01:intron 30.0%
TTCTCTCAATAGGAATATGT+GGG - Chr7:79711833-79711852 MsG0780040595.01.T01:CDS 30.0%
! AGTTCTGATTCTTCATTGAA+AGG - Chr7:79711245-79711264 MsG0780040595.01.T01:intron 30.0%
! ATGTGATGAATTTTGTACAG+TGG + Chr7:79711012-79711031 None:intergenic 30.0%
! CATTCATTACTATTGGTTGT+TGG - Chr7:79712623-79712642 MsG0780040595.01.T01:intron 30.0%
! TCAGTAACTCATACTTCTTT+TGG - Chr7:79712595-79712614 MsG0780040595.01.T01:intron 30.0%
!! CTTGTTTGTTTTCTAGATGA+TGG - Chr7:79711583-79711602 MsG0780040595.01.T01:intron 30.0%
!! CTTTATAGCTTTGGTTTCAT+CGG + Chr7:79711162-79711181 None:intergenic 30.0%
!! GATCTTCTTTGTTTCTATCT+TGG - Chr7:79712733-79712752 MsG0780040595.01.T01:intron 30.0%
!! GTTATTTGGTTTGGTATCAA+TGG - Chr7:79712037-79712056 MsG0780040595.01.T01:CDS 30.0%
!! GTTGTCATGCATTTATTTTC+TGG + Chr7:79713053-79713072 None:intergenic 30.0%
!! TTCTTTGTCCCATTTTTATC+AGG + Chr7:79712131-79712150 None:intergenic 30.0%
!! TTTTCATAGGTTAATTTGGG+AGG - Chr7:79711665-79711684 MsG0780040595.01.T01:intron 30.0%
!!! AGATGATGGATGTTTTTGTT+TGG - Chr7:79711597-79711616 MsG0780040595.01.T01:intron 30.0%
!!! GTATTGTTTTTGCTTGGAAT+TGG + Chr7:79711068-79711087 None:intergenic 30.0%
!!! GTGATTTTTTTGATGGAGAA+TGG - Chr7:79711360-79711379 MsG0780040595.01.T01:intron 30.0%
AAAAGGATGAACAAGATCAG+TGG + Chr7:79710889-79710908 None:intergenic 35.0%
AAGTATGTTCCTATAGGAGT+AGG - Chr7:79710606-79710625 MsG0780040595.01.T01:three_prime_UTR 35.0%
AATTAAGAGATGTGGTTACC+TGG - Chr7:79713673-79713692 MsG0780040595.01.T01:CDS 35.0%
ACAACCAAGTATGTTCCTAT+AGG - Chr7:79710600-79710619 MsG0780040595.01.T01:three_prime_UTR 35.0%
ACAGAATTAGATACCTTGGA+AGG + Chr7:79711517-79711536 None:intergenic 35.0%
ACCATTCTTAGTTCAAGAGT+GGG - Chr7:79712100-79712119 MsG0780040595.01.T01:CDS 35.0%
AGGTACTTCTCGTTATCAAT+GGG + Chr7:79713211-79713230 None:intergenic 35.0%
ATAGCCTCTAAACAAGACTA+TGG + Chr7:79712542-79712561 None:intergenic 35.0%
ATGAGATTGAGAAGTTGCAT+TGG + Chr7:79710949-79710968 None:intergenic 35.0%
CAACAAATATGCAGAGTTGA+TGG - Chr7:79711322-79711341 MsG0780040595.01.T01:intron 35.0%
CAAGAACCTGGTTTATAAAG+AGG + Chr7:79711404-79711423 None:intergenic 35.0%
CATTCAATTCATCGTAGACA+TGG + Chr7:79712447-79712466 None:intergenic 35.0%
CATTTGCACTTTACCTGAAA+TGG + Chr7:79712573-79712592 None:intergenic 35.0%
CGATGAATTGAATGTTCTTG+AGG - Chr7:79712453-79712472 MsG0780040595.01.T01:CDS 35.0%
GAAATGATGAAGATGAGAGA+TGG + Chr7:79710531-79710550 None:intergenic 35.0%
GAAGAAATGCATTCTCATCT+TGG + Chr7:79712666-79712685 None:intergenic 35.0%
GAGGAGAGAAGAGAATATTA+TGG - Chr7:79713697-79713716 MsG0780040595.01.T01:exon 35.0%
GGGAAATGCCTGATAAAAAT+GGG - Chr7:79712120-79712139 MsG0780040595.01.T01:CDS 35.0%
TACTCCTATAGGAACATACT+TGG + Chr7:79710607-79710626 None:intergenic 35.0%
TAGGTACTTCTCGTTATCAA+TGG + Chr7:79713212-79713231 None:intergenic 35.0%
TCTAAACAAGACTATGGACT+TGG + Chr7:79712536-79712555 None:intergenic 35.0%
TGGGAAATGCCTGATAAAAA+TGG - Chr7:79712119-79712138 MsG0780040595.01.T01:CDS 35.0%
TGTGAAAAAGTGGTGGTATT+TGG + Chr7:79710855-79710874 None:intergenic 35.0%
TTAGTAGTTCCTACTCCTAT+AGG + Chr7:79710618-79710637 None:intergenic 35.0%
TTGTTCACAATTCGGAAGAT+AGG + Chr7:79712794-79712813 None:intergenic 35.0%
! AATGGAAGAGTCCATTTTAG+AGG - Chr7:79711915-79711934 MsG0780040595.01.T01:intron 35.0%
! AGTCTGGTGTGAATATTTTC+AGG - Chr7:79712398-79712417 MsG0780040595.01.T01:CDS 35.0%
! ATGGAAGAGTCCATTTTAGA+GGG - Chr7:79711916-79711935 MsG0780040595.01.T01:intron 35.0%
! GTCTAGTTTGTGTAAGTTGT+TGG + Chr7:79710655-79710674 None:intergenic 35.0%
! GTGTGATTTGTGACTAAAGA+TGG + Chr7:79711131-79711150 None:intergenic 35.0%
! TTGTTGTGTTGCTCATAGAT+TGG - Chr7:79711755-79711774 MsG0780040595.01.T01:CDS 35.0%
!! AAGTCCATAGTCTTGTTTAG+AGG - Chr7:79712535-79712554 MsG0780040595.01.T01:intron 35.0%
!! AGAATGCTTGATTTGTTGAG+AGG - Chr7:79711786-79711805 MsG0780040595.01.T01:CDS 35.0%
!! CAGTGTTCATTTTTAGACCA+TGG - Chr7:79712685-79712704 MsG0780040595.01.T01:intron 35.0%
!! CTTTTTCACAATCTGTGAAG+TGG + Chr7:79711105-79711124 None:intergenic 35.0%
!! TGGTGTGAATATTTTCAGGA+AGG - Chr7:79712402-79712421 MsG0780040595.01.T01:CDS 35.0%
!! TTGTTGGTGATTCTCTCAAT+AGG - Chr7:79711823-79711842 MsG0780040595.01.T01:CDS 35.0%
!! TTTGGTATCAATGGTCTTGT+AGG - Chr7:79712046-79712065 MsG0780040595.01.T01:CDS 35.0%
!!! TAAGTGAGGTGGAAGTTTTT+TGG + Chr7:79713531-79713550 None:intergenic 35.0%
ACAATAGCAATCAGCCTTTC+AGG + Chr7:79713780-79713799 None:intergenic 40.0%
ACGCTTCGTCTTGATTTAGT+TGG - Chr7:79712155-79712174 MsG0780040595.01.T01:CDS 40.0%
AGAATTTCATTCCACGCATC+AGG + Chr7:79713439-79713458 None:intergenic 40.0%
AGGAAGGACTATTACCAAGA+AGG - Chr7:79712418-79712437 MsG0780040595.01.T01:CDS 40.0%
ATTACACAGCTTCACTTGCT+AGG - Chr7:79711282-79711301 MsG0780040595.01.T01:intron 40.0%
CACCATTCTTAGTTCAAGAG+TGG - Chr7:79712099-79712118 MsG0780040595.01.T01:CDS 40.0%
CCCAAGTTGTTATAGCTCTT+CGG + Chr7:79712483-79712502 None:intergenic 40.0%
CCGAAGAGCTATAACAACTT+GGG - Chr7:79712480-79712499 MsG0780040595.01.T01:CDS 40.0%
CGAAGAGCTATAACAACTTG+GGG - Chr7:79712481-79712500 MsG0780040595.01.T01:CDS 40.0%
CTTGCTAGGAAACAGAACAA+TGG - Chr7:79711296-79711315 MsG0780040595.01.T01:intron 40.0%
GTAGGATTATCACTTCTCTG+TGG - Chr7:79712064-79712083 MsG0780040595.01.T01:CDS 40.0%
GTGATATTCAGGTAGGATAC+AGG + Chr7:79713292-79713311 None:intergenic 40.0%
TATAACAACTTGGGGTAGGT+GGG - Chr7:79712489-79712508 MsG0780040595.01.T01:CDS 40.0%
TATCCTACCTGAATATCACG+AGG - Chr7:79713293-79713312 MsG0780040595.01.T01:CDS 40.0%
TATTGAGATGAGCTGTTCCA+CGG - Chr7:79713842-79713861 MsG0780040595.01.T01:five_prime_UTR 40.0%
TCCCACTCTTGAACTAAGAA+TGG + Chr7:79712104-79712123 None:intergenic 40.0%
TCCGAAGAGCTATAACAACT+TGG - Chr7:79712479-79712498 MsG0780040595.01.T01:CDS 40.0%
TCTTCTGCTGATGCTTATCT+CGG + Chr7:79713489-79713508 None:intergenic 40.0%
TTTGTTGAGAGGCAAGAGAT+TGG - Chr7:79711797-79711816 MsG0780040595.01.T01:CDS 40.0%
! AACAAGACTATGGACTTGGT+TGG + Chr7:79712532-79712551 None:intergenic 40.0%
! AACGGGGATTTTCTTTCTTC+AGG + Chr7:79713376-79713395 None:intergenic 40.0%
! ATGACAGATTTTCGGAAGGA+CGG - Chr7:79713316-79713335 MsG0780040595.01.T01:CDS 40.0%
! ATTGGTGTTTGAACAGGAAC+AGG + Chr7:79711050-79711069 None:intergenic 40.0%
! ATTTTGCTTCCGGTATATCG+AGG + Chr7:79713347-79713366 None:intergenic 40.0%
! CAGGTGATAGATTTTGCTTC+CGG + Chr7:79713357-79713376 None:intergenic 40.0%
! CATTTTCTCTCTAGCCTGAA+AGG - Chr7:79713763-79713782 MsG0780040595.01.T01:five_prime_UTR 40.0%
! CTTGGAATTGGTGTTTGAAC+AGG + Chr7:79711056-79711075 None:intergenic 40.0%
! TCACGAGGATGACAGATTTT+CGG - Chr7:79713308-79713327 MsG0780040595.01.T01:CDS 40.0%
! TGAGGCCCATTTTCTGTTTA+TGG - Chr7:79712298-79712317 MsG0780040595.01.T01:intron 40.0%
! TTTTATCATGAGTCCACCAG+TGG + Chr7:79712232-79712251 None:intergenic 40.0%
! TTTTGCTTCCGGTATATCGA+GGG + Chr7:79713346-79713365 None:intergenic 40.0%
!! AACGAGTCTTTCTAGTTCCA+TGG + Chr7:79712705-79712724 None:intergenic 40.0%
!! AGTAGAAGAAGAAGGTGTTG+TGG + Chr7:79710799-79710818 None:intergenic 40.0%
!! TGGAAGAGTCCATTTTAGAG+GGG - Chr7:79711917-79711936 MsG0780040595.01.T01:intron 40.0%
!! TTTAATGCAGTGGTGGACAA+TGG - Chr7:79713152-79713171 MsG0780040595.01.T01:CDS 40.0%
!!! GGCAAGAGATTGGTTTTTGT+TGG - Chr7:79711807-79711826 MsG0780040595.01.T01:CDS 40.0%
CACAATCTGTGAAGTGGTGT+TGG + Chr7:79711099-79711118 None:intergenic 45.0%
CATCCTCGTGATATTCAGGT+AGG + Chr7:79713299-79713318 None:intergenic 45.0%
CTATAACAACTTGGGGTAGG+TGG - Chr7:79712488-79712507 MsG0780040595.01.T01:CDS 45.0%
CTGCAGTCTTGGAATCTCAA+CGG + Chr7:79713394-79713413 None:intergenic 45.0%
CTGTCATCCTCGTGATATTC+AGG + Chr7:79713303-79713322 None:intergenic 45.0%
GAGCTATAACAACTTGGGGT+AGG - Chr7:79712485-79712504 MsG0780040595.01.T01:CDS 45.0%
GATTCCAAGACTGCAGTCAT+TGG - Chr7:79713398-79713417 MsG0780040595.01.T01:CDS 45.0%
GCATCAGCAGAAGAGATCAT+AGG - Chr7:79713495-79713514 MsG0780040595.01.T01:CDS 45.0%
GCTATTCTGCTTCCCATTTC+AGG - Chr7:79712557-79712576 MsG0780040595.01.T01:intron 45.0%
GTTTGAACAGGAACAGGAAC+AGG + Chr7:79711044-79711063 None:intergenic 45.0%
TATCAATGGGCGCAGTTTCA+TGG + Chr7:79713198-79713217 None:intergenic 45.0%
TATTCTCTTCTCTCCTCACC+AGG + Chr7:79713694-79713713 None:intergenic 45.0%
TGCAGTCTTGGAATCTCAAC+GGG + Chr7:79713393-79713412 None:intergenic 45.0%
TTGTCTTCAATACTGGCCAC+TGG - Chr7:79712213-79712232 MsG0780040595.01.T01:intron 45.0%
TTTGCTTCCGGTATATCGAG+GGG + Chr7:79713345-79713364 None:intergenic 45.0%
! AAGAGGCTTCCCCTCTAAAA+TGG + Chr7:79711929-79711948 None:intergenic 45.0%
! AGTGGTTGGCTACAAGTTGA+AGG - Chr7:79712969-79712988 MsG0780040595.01.T01:CDS 45.0%
! GAGGATGACAGATTTTCGGA+AGG - Chr7:79713312-79713331 MsG0780040595.01.T01:CDS 45.0%
! GGTGTTGTGGTGGAAATTGT+TGG + Chr7:79710786-79710805 None:intergenic 45.0%
! GTGGTGGAAATTGTTGGAGA+AGG + Chr7:79710780-79710799 None:intergenic 45.0%
! GTGGTTGGCTACAAGTTGAA+GGG - Chr7:79712970-79712989 MsG0780040595.01.T01:CDS 45.0%
!! AGAAGAAGAAGGTGTTGTGG+TGG + Chr7:79710796-79710815 None:intergenic 45.0%
!! AGTGGTGGACAATGGAATTC+GGG - Chr7:79713160-79713179 MsG0780040595.01.T01:CDS 45.0%
!! CAGTGGTGGACAATGGAATT+CGG - Chr7:79713159-79713178 MsG0780040595.01.T01:CDS 45.0%
!!! TTTTAATTTTACTAATTTTT+TGG - Chr7:79711541-79711560 MsG0780040595.01.T01:intron 5.0%
AGAGATGTGGTTACCTGGTG+AGG - Chr7:79713678-79713697 MsG0780040595.01.T01:CDS 50.0%
CGTAGACATGGCTACCTTCT+TGG + Chr7:79712435-79712454 None:intergenic 50.0%
GCAGTCTTGGAATCTCAACG+GGG + Chr7:79713392-79713411 None:intergenic 50.0%
TCTTAGGCGGGTACTCTGTT+AGG + Chr7:79713231-79713250 None:intergenic 50.0%
TCTTCAATACTGGCCACTGG+TGG - Chr7:79712216-79712235 MsG0780040595.01.T01:intron 50.0%
TTCTCCAGCACCCTCATCTT+AGG + Chr7:79713247-79713266 None:intergenic 50.0%
! AGAGTACCCGCCTAAGATGA+GGG - Chr7:79713234-79713253 MsG0780040595.01.T01:CDS 50.0%
ACGCATCAGGAACACCAGGA+AGG + Chr7:79713426-79713445 None:intergenic 55.0%
ACGGTCACCCCTCGATATAC+CGG - Chr7:79713335-79713354 MsG0780040595.01.T01:CDS 55.0%
CTAAGGGTTGCAGCCTTCCA+AGG - Chr7:79711501-79711520 MsG0780040595.01.T01:intron 55.0%
CTTGGAAGGCTGCAACCCTT+AGG + Chr7:79711503-79711522 None:intergenic 55.0%
GGCACCAATGACTGCAGTCT+TGG + Chr7:79713405-79713424 None:intergenic 55.0%
GGTGGACAATGGAATTCGGG+TGG - Chr7:79713163-79713182 MsG0780040595.01.T01:CDS 55.0%
TCCAGCACCCTCATCTTAGG+CGG + Chr7:79713244-79713263 None:intergenic 55.0%
TTCCACGCATCAGGAACACC+AGG + Chr7:79713430-79713449 None:intergenic 55.0%
TTCCTGGTGTTCCTGATGCG+TGG - Chr7:79713425-79713444 MsG0780040595.01.T01:CDS 55.0%
! CAGAGTACCCGCCTAAGATG+AGG - Chr7:79713233-79713252 MsG0780040595.01.T01:CDS 55.0%
! TGCAGTCATTGGTGCCTTCC+TGG - Chr7:79713409-79713428 MsG0780040595.01.T01:CDS 55.0%
CCAGCACCCTCATCTTAGGC+GGG + Chr7:79713243-79713262 None:intergenic 60.0%
! CCCGCCTAAGATGAGGGTGC+TGG - Chr7:79713240-79713259 MsG0780040595.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 79710423 79713865 79710423 ID=MsG0780040595.01;Name=MsG0780040595.01
Chr7 mRNA 79710423 79713865 79710423 ID=MsG0780040595.01.T01;Parent=MsG0780040595.01;Name=MsG0780040595.01.T01;_AED=0.27;_eAED=0.27;_QI=168|1|1|1|1|1|5|349|610
Chr7 exon 79710423 79711126 79710423 ID=MsG0780040595.01.T01:exon:16563;Parent=MsG0780040595.01.T01
Chr7 exon 79711710 79711868 79711710 ID=MsG0780040595.01.T01:exon:16562;Parent=MsG0780040595.01.T01
Chr7 exon 79712027 79712220 79712027 ID=MsG0780040595.01.T01:exon:16561;Parent=MsG0780040595.01.T01
Chr7 exon 79712323 79712515 79712323 ID=MsG0780040595.01.T01:exon:16560;Parent=MsG0780040595.01.T01
Chr7 exon 79712766 79713865 79712766 ID=MsG0780040595.01.T01:exon:16559;Parent=MsG0780040595.01.T01
Chr7 five_prime_UTR 79713698 79713865 79713698 ID=MsG0780040595.01.T01:five_prime_utr;Parent=MsG0780040595.01.T01
Chr7 CDS 79712766 79713697 79712766 ID=MsG0780040595.01.T01:cds;Parent=MsG0780040595.01.T01
Chr7 CDS 79712323 79712515 79712323 ID=MsG0780040595.01.T01:cds;Parent=MsG0780040595.01.T01
Chr7 CDS 79712027 79712220 79712027 ID=MsG0780040595.01.T01:cds;Parent=MsG0780040595.01.T01
Chr7 CDS 79711710 79711868 79711710 ID=MsG0780040595.01.T01:cds;Parent=MsG0780040595.01.T01
Chr7 CDS 79710772 79711126 79710772 ID=MsG0780040595.01.T01:cds;Parent=MsG0780040595.01.T01
Chr7 three_prime_UTR 79710423 79710771 79710423 ID=MsG0780040595.01.T01:three_prime_utr;Parent=MsG0780040595.01.T01
Gene Sequence

>MsG0780040595.01.T01

ATGGCTGATACAACCAAGTATGTTCCTATAGGAGTAGGAACTACTAATAATACTACTGGTGCCAACAACTTACACAAACTAGACTTCAAAAACATATTCACCATTCTCAAAACTAAAACTACTGTTGCTTTTGTTTATGCTTTTATGCTTGTTTTCATTGCTTTCACTCTTTTCTTAGCTTTTTCACCTTCTCCAACAATTTCCACCACAACACCTTCTTCTTCTACTTCTCAATTTTCTTCCATTTTTTCATACTTTTTTCCAAATACCACCACTTTTTCACAACTAAATAACACCACTGATCTTGTTCATCCTTTTGATCCATTTCAAAATAACACTTCTATTACTAGATCTACCAATGCAACTTCTCAATCTCATAATCCAAACACAAGTCAAAAAACTATCAATAGCAACATAACCACTGTACAAAATTCATCACATGATACAGTTCCTGTTCCTGTTCCTGTTCAAACACCAATTCCAAGCAAAAACAATACTTCAATCACCAACACCACTTCACAGATTGTGAAAAAGCAACCATCTTTAGTCACAAATCACACATCAAGTTCCGATGAAACCAAAGCTATAAAGAACTCAAATCAAACTACAAATGCTACTGTTAAAGCAGTTCCAACTATCCCTAACAAGAATTTGAGTTCTGATTCTTCATTGAAAGGTGTTGATTTGCATAATTACACAGCTTCACTTGCTAGGAAACAGAACAATGGAAGCAACAAATATGCAGAGTTGATGGAGTCTTTGATGAAGTGTGATTTTTTTGATGGAGAATGGGTTAAAGATGATTCTTATCCTCTTTATAAACCAGGTTCTTGTTCAATAATTGATGAACAGTTCAATTGTATTAGAAATGGAAGACCTGATAAAGATTATCAGAAATATAAATGGAAACCTAAGGGTTGCAGCCTTCCAAGATTGGATGCACATAGAATGCTTGATTTGTTGAGAGGCAAGAGATTGGTTTTTGTTGGTGATTCTCTCAATAGGAATATGTGGGAATCACTTATTTGTATACTAAAAAATTCTGTGAAAGATAAAAAGAAAGTTTATGAAGCAAATGGAAGAGTCCATTTTAGAGGGGAAGCCTCTTATTCATTTGTATTTAAGGATTATCACTTCTCTGTGGAGCTTTTTGTGTCACCATTCTTAGTTCAAGAGTGGGAAATGCCTGATAAAAATGGGACAAAGAAGGAAACGCTTCGTCTTGATTTAGTTGGTAGATCTTCAGATCAGTATAAAGATGCAGATATCATTGTCTTCAATACTGGCCACTGGTGGACTCATGATAAAACTTCTAAAGGGAAGGACTATTACCAAGAAGGTAGCCATGTCTACGATGAATTGAATGTTCTTGAGGCGTTCCGAAGAGCTATAACAACTTGGGGTAGGTGGGTTGATGCTAACGTAAATCCAACCAAGTCCATAGTCTTGTTTAGAGGCTATTCTGCTTCCCATTTCAGTGGTGGACAATGGAATTCGGGTGGACAATGTGACCATGAAACTGCGCCCATTGATAACGAGAAGTACCTAACAGAGTACCCGCCTAAGATGAGGGTGCTGGAGAAAGTTCTTAAGAATATGAAAAATCCTGTATCCTACCTGAATATCACGAGGATGACAGATTTTCGGAAGGACGGTCACCCCTCGATATACCGGAAGCAAAATCTATCACCTGAAGAAAGAAAATCCCCGTTGAGATTCCAAGACTGCAGTCATTGGTGCCTTCCTGGTGTTCCTGATGCGTGGAATGAAATTCTCTATGCTGAACTTCTAATGAGAGAGTACCGAGATAAGCATCAGCAGAAGAGATCATAG
Protein sequence

>MsG0780040595.01.T01

MADTTKYVPIGVGTTNNTTGANNLHKLDFKNIFTILKTKTTVAFVYAFMLVFIAFTLFLAFSPSPTISTTTPSSSTSQFSSIFSYFFPNTTTFSQLNNTTDLVHPFDPFQNNTSITRSTNATSQSHNPNTSQKTINSNITTVQNSSHDTVPVPVPVQTPIPSKNNTSITNTTSQIVKKQPSLVTNHTSSSDETKAIKNSNQTTNATVKAVPTIPNKNLSSDSSLKGVDLHNYTASLARKQNNGSNKYAELMESLMKCDFFDGEWVKDDSYPLYKPGSCSIIDEQFNCIRNGRPDKDYQKYKWKPKGCSLPRLDAHRMLDLLRGKRLVFVGDSLNRNMWESLICILKNSVKDKKKVYEANGRVHFRGEASYSFVFKDYHFSVELFVSPFLVQEWEMPDKNGTKKETLRLDLVGRSSDQYKDADIIVFNTGHWWTHDKTSKGKDYYQEGSHVYDELNVLEAFRRAITTWGRWVDANVNPTKSIVLFRGYSASHFSGGQWNSGGQCDHETAPIDNEKYLTEYPPKMRVLEKVLKNMKNPVSYLNITRMTDFRKDGHPSIYRKQNLSPEERKSPLRFQDCSHWCLPGVPDAWNEILYAELLMREYRDKHQQKRS*