AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040870.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040870.01.T01 MTR_7g100260 82.081 173 5 1 13 159 13 185 2.24e-77 229
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040870.01.T01 AT5G02770 46.763 139 39 4 62 166 76 213 1.11e-26 100

Find 129 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATAGAGTATTCTGTTTC+TGG 0.141837 7:+83693378 MsG0780040870.01.T01:three_prime_UTR
GAAAGTGGAGCGTCGGTTTC+AGG 0.160611 7:-83691223 None:intergenic
ATGTTTCTGATTCTATCTTC+TGG 0.202519 7:+83693070 MsG0780040870.01.T01:three_prime_UTR
CAGCATGTTTCTCTTGTTGT+AGG 0.216427 7:+83692030 MsG0780040870.01.T01:three_prime_UTR
TAAATTCATGTCATATGTTT+TGG 0.224189 7:+83692689 MsG0780040870.01.T01:three_prime_UTR
ATCTGACTCTGAGTGGGGTT+TGG 0.241492 7:-83691140 None:intergenic
GTTTGGGTGAGGTGGGGTCT+AGG 0.246385 7:-83691123 None:intergenic
TACTCTATTCTCCAAACTTT+TGG 0.249497 7:-83693366 None:intergenic
AAGTTAAAATTACCAGATTC+TGG 0.272565 7:-83692613 None:intergenic
TGAGTGGGGTTTGGGTGAGG+TGG 0.282725 7:-83691131 None:intergenic
CATTTCATACAGTACTTGTT+TGG 0.284610 7:+83693445 MsG0780040870.01.T01:three_prime_UTR
TGTTTCTGATTCTATCTTCT+GGG 0.293404 7:+83693071 MsG0780040870.01.T01:three_prime_UTR
AGATATACAATTCTATGTTT+TGG 0.299247 7:-83693274 None:intergenic
TGACACCTTTGGGTAATTAT+TGG 0.303499 7:+83692386 MsG0780040870.01.T01:three_prime_UTR
TCTGACTCTGAGTGGGGTTT+GGG 0.303834 7:-83691139 None:intergenic
GCATCTTTGTCGGCGGGAAT+TGG 0.309551 7:-83691163 None:intergenic
CAATGAAAGATAGATGCTTC+TGG 0.315216 7:-83692277 None:intergenic
TTCAGCCGGAGTCGTCTCTT+TGG 0.326592 7:-83691200 None:intergenic
TCTTGCTAGGTTTGCTGCAC+CGG 0.328630 7:+83691642 MsG0780040870.01.T01:CDS
ACCAATCAGGCACTACCTTT+TGG 0.339925 7:-83692565 None:intergenic
GTGGTTGCGGCGGTGGCGGA+AGG 0.344852 7:-83691061 None:intergenic
GGTTGCGGCGGTGGCGGAAG+GGG 0.348961 7:-83691059 None:intergenic
GGCTCACTAGGTGACACCTT+TGG 0.350802 7:+83692375 MsG0780040870.01.T01:three_prime_UTR
TTCTTTCTCAGATAACTTAA+CGG 0.352224 7:-83691290 None:intergenic
GAATGATAGGCGGCTGTTGC+TGG 0.357397 7:+83691980 MsG0780040870.01.T01:intron
CTACTTCTCACTACCGATAA+TGG 0.357715 7:+83692796 MsG0780040870.01.T01:three_prime_UTR
GCGGCTGTTGCTGGCAATGC+TGG 0.367071 7:+83691989 MsG0780040870.01.T01:CDS
AGTACAAATGCCGCCATTAT+CGG 0.369789 7:-83692809 None:intergenic
TCGATAGGGTTATCCTCTGT+TGG 0.375330 7:-83691097 None:intergenic
GGATCACCATGTTTCGTTGC+TGG 0.378536 7:+83692976 MsG0780040870.01.T01:three_prime_UTR
CTTTGTGTGGACCAAAAGTT+TGG 0.378828 7:+83693355 MsG0780040870.01.T01:three_prime_UTR
GCTCACTAGGTGACACCTTT+GGG 0.382120 7:+83692376 MsG0780040870.01.T01:three_prime_UTR
CTACTAGTACATAACTTCTA+TGG 0.382803 7:+83692881 MsG0780040870.01.T01:three_prime_UTR
TTTGGGTGAGGTGGGGTCTA+GGG 0.385855 7:-83691122 None:intergenic
GTTGGTGGTGGTTGCGGCGG+TGG 0.390869 7:-83691068 None:intergenic
CTGGGCTCATGAATAGATAA+TGG 0.391542 7:+83693089 MsG0780040870.01.T01:three_prime_UTR
GTTGCTGGCAATGCTGGAGG+AGG 0.392514 7:+83691995 MsG0780040870.01.T01:CDS
CATAGAAGTTATGTACTAGT+AGG 0.395213 7:-83692880 None:intergenic
TTCTTCAGCAGGATCGGTCT+TGG 0.396533 7:-83691668 None:intergenic
AGTGGGGTTTGGGTGAGGTG+GGG 0.401107 7:-83691129 None:intergenic
GAATAGAGTATTCTGTTTCT+GGG 0.401966 7:+83693379 MsG0780040870.01.T01:three_prime_UTR
GTGGCGGAAGGGGTTGCCAT+TGG 0.403893 7:-83691049 None:intergenic
GAGTGGGGTTTGGGTGAGGT+GGG 0.404681 7:-83691130 None:intergenic
CTCTGTTGGGTTTCCGTTGG+TGG 0.405625 7:-83691083 None:intergenic
GGTGGTGGTTGCGGCGGTGG+CGG 0.407399 7:-83691065 None:intergenic
TGCTTCTTGGTTCAAATGAA+TGG 0.412544 7:+83693413 MsG0780040870.01.T01:three_prime_UTR
CGATAGGGTTATCCTCTGTT+GGG 0.413400 7:-83691096 None:intergenic
CTCTGAGTGGGGTTTGGGTG+AGG 0.418891 7:-83691134 None:intergenic
ATGCGCCGCGCCGAACGTTT+CGG 0.419452 7:+83691262 MsG0780040870.01.T01:CDS
AATGAAAGATAGATGCTTCT+GGG 0.422591 7:-83692276 None:intergenic
TGGTTGCGGCGGTGGCGGAA+GGG 0.427018 7:-83691060 None:intergenic
TAGATGCTTCTGGGGATTAA+CGG 0.431889 7:-83692267 None:intergenic
CTTGCTAGGTTTGCTGCACC+GGG 0.434438 7:+83691643 MsG0780040870.01.T01:CDS
TGTTTGGAACATTACTTATG+TGG 0.435178 7:+83693461 MsG0780040870.01.T01:three_prime_UTR
AAGAGTAATAATGTTCTCTC+AGG 0.439685 7:+83692747 MsG0780040870.01.T01:three_prime_UTR
GTTTCCGTTGGTGGTGGTTG+CGG 0.444893 7:-83691074 None:intergenic
CATTGGATTGGAAAGAGAAA+TGG 0.447249 7:-83691032 None:intergenic
TAAGAACAGCAAAGGGTTTG+AGG 0.448245 7:-83692850 None:intergenic
CTCATTATCATTGTGCCAAA+AGG 0.449015 7:+83692550 MsG0780040870.01.T01:three_prime_UTR
TGTCATGCTGATCCAGAATC+TGG 0.456533 7:+83692601 MsG0780040870.01.T01:three_prime_UTR
GCCAAAAGGTAGTGCCTGAT+TGG 0.469660 7:+83692564 MsG0780040870.01.T01:three_prime_UTR
GTCGTCGTCAGCATCTTTGT+CGG 0.471755 7:-83691173 None:intergenic
ATCCTCTGTTGGGTTTCCGT+TGG 0.473461 7:-83691086 None:intergenic
CATTATCGGTAGTGAGAAGT+AGG 0.488723 7:-83692795 None:intergenic
ACAAGTACTGTATGAAATGA+TGG 0.490834 7:-83693441 None:intergenic
CATTTCTCTTTCCAATCCAA+TGG 0.491164 7:+83691033 MsG0780040870.01.T01:exon
AATTGGATCTGACTCTGAGT+GGG 0.499779 7:-83691146 None:intergenic
GGAAGGGGTTGCCATTGGAT+TGG 0.504121 7:-83691044 None:intergenic
AGAAGAAAGCTCGTCTTGCT+AGG 0.504439 7:+83691629 MsG0780040870.01.T01:CDS
TTTATCTTCTTCAGCAGGAT+CGG 0.506048 7:-83691674 None:intergenic
ACCGCCGCAACCACCACCAA+CGG 0.506471 7:+83691070 MsG0780040870.01.T01:CDS
ATAGCTTGCATATAAGATGA+AGG 0.512903 7:+83692658 MsG0780040870.01.T01:three_prime_UTR
TCCGTTGGTGGTGGTTGCGG+CGG 0.513562 7:-83691071 None:intergenic
GAAGATAGAATCAGAAACAT+AGG 0.517836 7:-83693067 None:intergenic
AACGGTAATACCGAAACGTT+CGG 0.521256 7:-83691272 None:intergenic
GATAAACTAAGAACAGCAAA+GGG 0.523490 7:-83692857 None:intergenic
TTCTTCTGAACATCGGAAAG+TGG 0.523703 7:-83691238 None:intergenic
TTGGATCAGTAAAACCAATC+AGG 0.524737 7:-83692578 None:intergenic
GTGGGGTCTAGGGTTTCGAT+AGG 0.527123 7:-83691112 None:intergenic
TCGTCAGCATCTTTGTCGGC+GGG 0.529841 7:-83691169 None:intergenic
GAATTGTATATCTGTAGTGC+TGG 0.538501 7:+83693284 MsG0780040870.01.T01:three_prime_UTR
AATAAAGTTAACAACAATGA+CGG 0.539536 7:-83693484 None:intergenic
TTGCTGGCAATGCTGGAGGA+GGG 0.540971 7:+83691996 MsG0780040870.01.T01:CDS
GCAGGATCGGTCTTGGAACC+CGG 0.542483 7:-83691661 None:intergenic
TGTTGGGTTTCCGTTGGTGG+TGG 0.544627 7:-83691080 None:intergenic
GCGTCGGTTTCAGGTTCAGC+CGG 0.546106 7:-83691214 None:intergenic
AGGAACACGAAAACTCGAAA+AGG 0.548532 7:+83690878 MsG0780040870.01.T01:five_prime_UTR
ATAGAAGTTATGTACTAGTA+GGG 0.551700 7:-83692879 None:intergenic
TAACGGTTCAAAAGTAGATA+CGG 0.554749 7:-83692250 None:intergenic
TGAATCAATCCACAGCTTGG+AGG 0.554760 7:-83692314 None:intergenic
AAAAGAAAGCAAGAGCACTT+AGG 0.555504 7:+83691695 MsG0780040870.01.T01:CDS
ACTTGAATCAATCCACAGCT+TGG 0.559019 7:-83692317 None:intergenic
GCTGTTGCTGGCAATGCTGG+AGG 0.561320 7:+83691992 MsG0780040870.01.T01:CDS
TATATCTGTAGTGCTGGATG+TGG 0.562610 7:+83693290 MsG0780040870.01.T01:three_prime_UTR
TGTCTCGGTATTGGCTCACT+AGG 0.563898 7:+83692363 MsG0780040870.01.T01:three_prime_UTR
TCTTGGTTCAAATGAATGGA+AGG 0.567313 7:+83693417 MsG0780040870.01.T01:three_prime_UTR
ATTCTGGATCAGCATGACAT+TGG 0.567963 7:-83692597 None:intergenic
TCATCATCAGCAGTTGAAGT+AGG 0.570991 7:-83691601 None:intergenic
TCAGCAGTTGAAGTAGGAGT+AGG 0.577261 7:-83691595 None:intergenic
GGATAAACTAAGAACAGCAA+AGG 0.577376 7:-83692858 None:intergenic
GTCGTCAGCATCTTTGTCGG+CGG 0.578101 7:-83691170 None:intergenic
AGCGTAATTCACGAGCCGAA+AGG 0.578186 7:+83691314 MsG0780040870.01.T01:CDS
TGATACCTTCCTCCAAGCTG+TGG 0.583006 7:+83692305 MsG0780040870.01.T01:three_prime_UTR
ACGTTCATACTAATCAACTT+AGG 0.585722 7:-83693040 None:intergenic
GAATTGGATCTGACTCTGAG+TGG 0.589885 7:-83691147 None:intergenic
ATTGGATCTGACTCTGAGTG+GGG 0.590403 7:-83691145 None:intergenic
AGCACTTCAATTTCGCAGAG+TGG 0.594700 7:+83692219 MsG0780040870.01.T01:three_prime_UTR
TGGGGTCTAGGGTTTCGATA+GGG 0.597541 7:-83691111 None:intergenic
TCAGAATTGACTTGAGACAA+AGG 0.598781 7:-83691833 None:intergenic
TGTCTACCAGCAACGAAACA+TGG 0.600212 7:-83692982 None:intergenic
AACATCGGAAAGTGGAGCGT+CGG 0.603371 7:-83691230 None:intergenic
ACGAAAACTCGAAAAGGCAG+AGG 0.615261 7:+83690884 MsG0780040870.01.T01:five_prime_UTR
AATACCGAGACAACAAAAGC+AGG 0.616877 7:-83692352 None:intergenic
ATGAAAGATAGATGCTTCTG+GGG 0.620502 7:-83692275 None:intergenic
TCAATCCACAGCTTGGAGGA+AGG 0.623776 7:-83692310 None:intergenic
AATAGAGTATTCTGTTTCTG+GGG 0.624081 7:+83693380 MsG0780040870.01.T01:three_prime_UTR
GCGCATCTTCTTCTGAACAT+CGG 0.626640 7:-83691245 None:intergenic
TTTGTCTCAAGTCAATTCTG+AGG 0.631176 7:+83691835 MsG0780040870.01.T01:CDS
CACTTCGGAAGTACAATCGA+TGG 0.645154 7:-83690995 None:intergenic
ATTATCGGTAGTGAGAAGTA+GGG 0.649405 7:-83692794 None:intergenic
CAAATCCAAAGAGACGACTC+CGG 0.655383 7:+83691195 MsG0780040870.01.T01:CDS
GCGAAGAGAGACAAACACTT+CGG 0.655466 7:-83691010 None:intergenic
GACGACCAATAATTACCCAA+AGG 0.660937 7:-83692391 None:intergenic
AAGTTGATTAGTATGAACGT+TGG 0.670304 7:+83693043 MsG0780040870.01.T01:three_prime_UTR
GTTCAAAAGTAGATACGGTG+TGG 0.673459 7:-83692245 None:intergenic
CACCAACGGAAACCCAACAG+AGG 0.684921 7:+83691084 MsG0780040870.01.T01:CDS
TGTTTCACATGAAAACTATG+TGG 0.696162 7:+83693121 MsG0780040870.01.T01:three_prime_UTR
CTTCTCACTACCGATAATGG+CGG 0.708039 7:+83692799 MsG0780040870.01.T01:three_prime_UTR
TAATACCGAAACGTTCGGCG+CGG 0.741458 7:-83691267 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATAAAAAATAGATTACA+AGG - Chr7:83693335-83693354 None:intergenic 15.0%
!! ATAATCTTTATCTGAATTTA+GGG + Chr7:83691338-83691357 MsG0780040870.01.T01:intron 15.0%
!! GAACAAAATTATTGAAATTA+GGG + Chr7:83691385-83691404 MsG0780040870.01.T01:intron 15.0%
!! TATAATCTTTATCTGAATTT+AGG + Chr7:83691337-83691356 MsG0780040870.01.T01:intron 15.0%
!! TGAACAAAATTATTGAAATT+AGG + Chr7:83691384-83691403 MsG0780040870.01.T01:intron 15.0%
!!! ATTATGTTGCTTTTTTATTT+AGG + Chr7:83693148-83693167 MsG0780040870.01.T01:three_prime_UTR 15.0%
!!! TAAAAATTTTAGATGAATGT+AGG + Chr7:83692471-83692490 MsG0780040870.01.T01:three_prime_UTR 15.0%
!!! TACATTCATCTAAAATTTTT+AGG - Chr7:83692472-83692491 None:intergenic 15.0%
!!! TTATGTTGCTTTTTTATTTA+GGG + Chr7:83693149-83693168 MsG0780040870.01.T01:three_prime_UTR 15.0%
!! AATAAAGTTAACAACAATGA+CGG - Chr7:83693487-83693506 None:intergenic 20.0%
!! ATATATGAATTGTGTATGAT+TGG + Chr7:83691754-83691773 MsG0780040870.01.T01:intron 20.0%
!!! AAATTCATGTCATATGTTTT+GGG + Chr7:83692690-83692709 MsG0780040870.01.T01:three_prime_UTR 20.0%
!!! AGATATACAATTCTATGTTT+TGG - Chr7:83693277-83693296 None:intergenic 20.0%
!!! ATAATCTTTCTAGTAACAAA+AGG - Chr7:83691901-83691920 None:intergenic 20.0%
!!! CATTTCAATTCTCAATTTTA+GGG - Chr7:83691535-83691554 None:intergenic 20.0%
!!! GGTAATTTTAACTTAGTAAT+AGG + Chr7:83692622-83692641 MsG0780040870.01.T01:three_prime_UTR 20.0%
!!! TAAATTCATGTCATATGTTT+TGG + Chr7:83692689-83692708 MsG0780040870.01.T01:three_prime_UTR 20.0%
!!! TATGTTGCTTTTTTATTTAG+GGG + Chr7:83693150-83693169 MsG0780040870.01.T01:three_prime_UTR 20.0%
!!! TATTTTTTATGTTCTTTGTG+TGG + Chr7:83693342-83693361 MsG0780040870.01.T01:three_prime_UTR 20.0%
!!! TCATTTCAATTCTCAATTTT+AGG - Chr7:83691536-83691555 None:intergenic 20.0%
! AAGTTAAAATTACCAGATTC+TGG - Chr7:83692616-83692635 None:intergenic 25.0%
! ATAGAAGTTATGTACTAGTA+GGG - Chr7:83692882-83692901 None:intergenic 25.0%
! CAGATAAAGATTATACCTTT+CGG - Chr7:83691332-83691351 None:intergenic 25.0%
! TGTATGATTGGTATCTTATT+AGG + Chr7:83691766-83691785 MsG0780040870.01.T01:intron 25.0%
! TTAGGGTTACGAATTAAAAA+GGG - Chr7:83691518-83691537 None:intergenic 25.0%
! TTCTTTCTCAGATAACTTAA+CGG - Chr7:83691293-83691312 None:intergenic 25.0%
!! AATTCATGTCATATGTTTTG+GGG + Chr7:83692691-83692710 MsG0780040870.01.T01:three_prime_UTR 25.0%
!! TTAAAGGCATATGTAGTTTA+TGG - Chr7:83692117-83692136 None:intergenic 25.0%
!! TTTAGGGTTACGAATTAAAA+AGG - Chr7:83691519-83691538 None:intergenic 25.0%
!! TTTCTAGTAACAAAAGGTAT+TGG - Chr7:83691895-83691914 None:intergenic 25.0%
!! TTTTTCTTCATGTAAGTCAA+TGG + Chr7:83692060-83692079 MsG0780040870.01.T01:intron 25.0%
!!! AGATGAATGTAGGTTTTTTT+TGG + Chr7:83692481-83692500 MsG0780040870.01.T01:three_prime_UTR 25.0%
!!! ATTATGATTTTTTGCAGGTT+TGG + Chr7:83691568-83691587 MsG0780040870.01.T01:intron 25.0%
!!! GATGAATGTAGGTTTTTTTT+GGG + Chr7:83692482-83692501 MsG0780040870.01.T01:three_prime_UTR 25.0%
!!! GTTTGTTTTGAATTTAGGTT+TGG + Chr7:83691407-83691426 MsG0780040870.01.T01:intron 25.0%
!!! TACTGATTATGATTTTTTGC+AGG + Chr7:83691563-83691582 MsG0780040870.01.T01:intron 25.0%
!!! TGAAGCATGTTTGTTTTAAA+GGG + Chr7:83692955-83692974 MsG0780040870.01.T01:three_prime_UTR 25.0%
!!! TGTAACGTTTTTGGATAATA+CGG + Chr7:83692905-83692924 MsG0780040870.01.T01:three_prime_UTR 25.0%
!!! TTAGGGTTTGTTTTGAATTT+AGG + Chr7:83691402-83691421 MsG0780040870.01.T01:intron 25.0%
!!! TTGTTTCTTTTAATGGTTCT+AGG + Chr7:83692771-83692790 MsG0780040870.01.T01:three_prime_UTR 25.0%
!!! TTTTGTGTGTTTTGAATGAT+AGG + Chr7:83691967-83691986 MsG0780040870.01.T01:intron 25.0%
AAGAGTAATAATGTTCTCTC+AGG + Chr7:83692747-83692766 MsG0780040870.01.T01:three_prime_UTR 30.0%
AATGAAAGATAGATGCTTCT+GGG - Chr7:83692279-83692298 None:intergenic 30.0%
ACGTTCATACTAATCAACTT+AGG - Chr7:83693043-83693062 None:intergenic 30.0%
ATGTAGTTTATGGAAGCAAA+AGG - Chr7:83692107-83692126 None:intergenic 30.0%
CATAGAAGTTATGTACTAGT+AGG - Chr7:83692883-83692902 None:intergenic 30.0%
CATTTCATACAGTACTTGTT+TGG + Chr7:83693445-83693464 MsG0780040870.01.T01:three_prime_UTR 30.0%
CGGAAAAAAAGAGAATATAG+AGG + Chr7:83690858-83690877 MsG0780040870.01.T01:five_prime_UTR 30.0%
CTACTAGTACATAACTTCTA+TGG + Chr7:83692881-83692900 MsG0780040870.01.T01:three_prime_UTR 30.0%
GAAGATAGAATCAGAAACAT+AGG - Chr7:83693070-83693089 None:intergenic 30.0%
GATAAACTAAGAACAGCAAA+GGG - Chr7:83692860-83692879 None:intergenic 30.0%
TAACGGTTCAAAAGTAGATA+CGG - Chr7:83692253-83692272 None:intergenic 30.0%
TGTAGTTTATGGAAGCAAAA+GGG - Chr7:83692106-83692125 None:intergenic 30.0%
TGTTTCACATGAAAACTATG+TGG + Chr7:83693121-83693140 MsG0780040870.01.T01:three_prime_UTR 30.0%
! AAGTTGATTAGTATGAACGT+TGG + Chr7:83693043-83693062 MsG0780040870.01.T01:three_prime_UTR 30.0%
! ACAAGTACTGTATGAAATGA+TGG - Chr7:83693444-83693463 None:intergenic 30.0%
! AGAATAGAGTATTCTGTTTC+TGG + Chr7:83693378-83693397 MsG0780040870.01.T01:three_prime_UTR 30.0%
! ATAGCTTGCATATAAGATGA+AGG + Chr7:83692658-83692677 MsG0780040870.01.T01:three_prime_UTR 30.0%
! ATGTTTCTGATTCTATCTTC+TGG + Chr7:83693070-83693089 MsG0780040870.01.T01:three_prime_UTR 30.0%
! CATATAAGATGAAGGTTTTC+TGG + Chr7:83692666-83692685 MsG0780040870.01.T01:three_prime_UTR 30.0%
! GAATAGAGTATTCTGTTTCT+GGG + Chr7:83693379-83693398 MsG0780040870.01.T01:three_prime_UTR 30.0%
! GTATTGAAACTGTTTTGTGT+GGG - Chr7:83690946-83690965 None:intergenic 30.0%
! TACTCTATTCTCCAAACTTT+TGG - Chr7:83693369-83693388 None:intergenic 30.0%
! TGTTTCTGATTCTATCTTCT+GGG + Chr7:83693071-83693090 MsG0780040870.01.T01:three_prime_UTR 30.0%
! TGTTTGGAACATTACTTATG+TGG + Chr7:83693461-83693480 MsG0780040870.01.T01:three_prime_UTR 30.0%
! TTCTATGGTTGTAACGTTTT+TGG + Chr7:83692896-83692915 MsG0780040870.01.T01:three_prime_UTR 30.0%
! TTCTTTTTATCTTCTTCAGC+AGG - Chr7:83691682-83691701 None:intergenic 30.0%
!! AATAGAGTATTCTGTTTCTG+GGG + Chr7:83693380-83693399 MsG0780040870.01.T01:three_prime_UTR 30.0%
!! AGTATTGAAACTGTTTTGTG+TGG - Chr7:83690947-83690966 None:intergenic 30.0%
!! CTCAGGTTTGTTTCTTTTAA+TGG + Chr7:83692764-83692783 MsG0780040870.01.T01:three_prime_UTR 30.0%
!!! ATGTAGGTTTTTTTTGGGAA+AGG + Chr7:83692487-83692506 MsG0780040870.01.T01:three_prime_UTR 30.0%
!!! CTGAAGCATGTTTGTTTTAA+AGG + Chr7:83692954-83692973 MsG0780040870.01.T01:three_prime_UTR 30.0%
!!! GGCTTAAACTGTTTTTATGA+AGG + Chr7:83693171-83693190 MsG0780040870.01.T01:three_prime_UTR 30.0%
ATGAAAGATAGATGCTTCTG+GGG - Chr7:83692278-83692297 None:intergenic 35.0%
ATTATCGGTAGTGAGAAGTA+GGG - Chr7:83692797-83692816 None:intergenic 35.0%
CAATGAAAGATAGATGCTTC+TGG - Chr7:83692280-83692299 None:intergenic 35.0%
CATTTCTCTTTCCAATCCAA+TGG + Chr7:83691033-83691052 MsG0780040870.01.T01:exon 35.0%
CTCATTATCATTGTGCCAAA+AGG + Chr7:83692550-83692569 MsG0780040870.01.T01:three_prime_UTR 35.0%
GAATTGTATATCTGTAGTGC+TGG + Chr7:83693284-83693303 MsG0780040870.01.T01:three_prime_UTR 35.0%
GATGATGCATTTGAAAACCT+GGG - Chr7:83691809-83691828 None:intergenic 35.0%
GGATAAACTAAGAACAGCAA+AGG - Chr7:83692861-83692880 None:intergenic 35.0%
TCTTGGTTCAAATGAATGGA+AGG + Chr7:83693417-83693436 MsG0780040870.01.T01:three_prime_UTR 35.0%
TGACACCTTTGGGTAATTAT+TGG + Chr7:83692386-83692405 MsG0780040870.01.T01:three_prime_UTR 35.0%
TGCTTCTTGGTTCAAATGAA+TGG + Chr7:83693413-83693432 MsG0780040870.01.T01:three_prime_UTR 35.0%
TTATTGCTTTCTTTGTTCCC+AGG + Chr7:83691789-83691808 MsG0780040870.01.T01:intron 35.0%
TTGGATCAGTAAAACCAATC+AGG - Chr7:83692581-83692600 None:intergenic 35.0%
TTTATCTTCTTCAGCAGGAT+CGG - Chr7:83691677-83691696 None:intergenic 35.0%
TTTGTCTCAAGTCAATTCTG+AGG + Chr7:83691835-83691854 MsG0780040870.01.T01:CDS 35.0%
! CATTGGATTGGAAAGAGAAA+TGG - Chr7:83691035-83691054 None:intergenic 35.0%
! TGATGATGCATTTGAAAACC+TGG - Chr7:83691810-83691829 None:intergenic 35.0%
!! AAAAGAAAGCAAGAGCACTT+AGG + Chr7:83691695-83691714 MsG0780040870.01.T01:CDS 35.0%
!! CTAGTAACAAAAGGTATTGG+AGG - Chr7:83691892-83691911 None:intergenic 35.0%
!! TCAGAATTGACTTGAGACAA+AGG - Chr7:83691836-83691855 None:intergenic 35.0%
!! TGTGTGTTTTGAATGATAGG+CGG + Chr7:83691970-83691989 MsG0780040870.01.T01:intron 35.0%
AAAAAGACGAGGATCTGAAG+AGG + Chr7:83691461-83691480 MsG0780040870.01.T01:intron 40.0%
AACGGTAATACCGAAACGTT+CGG - Chr7:83691275-83691294 None:intergenic 40.0%
AATACCGAGACAACAAAAGC+AGG - Chr7:83692355-83692374 None:intergenic 40.0%
AATTGGATCTGACTCTGAGT+GGG - Chr7:83691149-83691168 None:intergenic 40.0%
ACTTGAATCAATCCACAGCT+TGG - Chr7:83692320-83692339 None:intergenic 40.0%
AGGAACACGAAAACTCGAAA+AGG + Chr7:83690878-83690897 MsG0780040870.01.T01:five_prime_UTR 40.0%
AGTACAAATGCCGCCATTAT+CGG - Chr7:83692812-83692831 None:intergenic 40.0%
ATTCTGGATCAGCATGACAT+TGG - Chr7:83692600-83692619 None:intergenic 40.0%
CATTATCGGTAGTGAGAAGT+AGG - Chr7:83692798-83692817 None:intergenic 40.0%
CTACTTCTCACTACCGATAA+TGG + Chr7:83692796-83692815 MsG0780040870.01.T01:three_prime_UTR 40.0%
CTGGGCTCATGAATAGATAA+TGG + Chr7:83693089-83693108 MsG0780040870.01.T01:three_prime_UTR 40.0%
CTTTGTGTGGACCAAAAGTT+TGG + Chr7:83693355-83693374 MsG0780040870.01.T01:three_prime_UTR 40.0%
GACGACCAATAATTACCCAA+AGG - Chr7:83692394-83692413 None:intergenic 40.0%
GTTCAAAAGTAGATACGGTG+TGG - Chr7:83692248-83692267 None:intergenic 40.0%
TAAGAACAGCAAAGGGTTTG+AGG - Chr7:83692853-83692872 None:intergenic 40.0%
TCATCATCAGCAGTTGAAGT+AGG - Chr7:83691604-83691623 None:intergenic 40.0%
TCTGTATTACAAGGACCTGA+GGG + Chr7:83691437-83691456 MsG0780040870.01.T01:intron 40.0%
TTCTTCTGAACATCGGAAAG+TGG - Chr7:83691241-83691260 None:intergenic 40.0%
! CAGCATGTTTCTCTTGTTGT+AGG + Chr7:83692030-83692049 MsG0780040870.01.T01:three_prime_UTR 40.0%
! TAGATGCTTCTGGGGATTAA+CGG - Chr7:83692270-83692289 None:intergenic 40.0%
! TATATCTGTAGTGCTGGATG+TGG + Chr7:83693290-83693309 MsG0780040870.01.T01:three_prime_UTR 40.0%
!! GTAACAAAAGGTATTGGAGG+TGG - Chr7:83691889-83691908 None:intergenic 40.0%
!! TGCTTTTGTTGTCTCGGTAT+TGG + Chr7:83692354-83692373 MsG0780040870.01.T01:three_prime_UTR 40.0%
!!! ATGTCATATGTTTTGGGGAG+AGG + Chr7:83692696-83692715 MsG0780040870.01.T01:three_prime_UTR 40.0%
ACGAAAACTCGAAAAGGCAG+AGG + Chr7:83690884-83690903 MsG0780040870.01.T01:five_prime_UTR 45.0%
AGAAGAAAGCTCGTCTTGCT+AGG + Chr7:83691629-83691648 MsG0780040870.01.T01:CDS 45.0%
AGCACTTCAATTTCGCAGAG+TGG + Chr7:83692219-83692238 MsG0780040870.01.T01:three_prime_UTR 45.0%
AGGCTAACATTGAGCCTGTA+AGG + Chr7:83691855-83691874 MsG0780040870.01.T01:intron 45.0%
ATTGGATCTGACTCTGAGTG+GGG - Chr7:83691148-83691167 None:intergenic 45.0%
CAAATCCAAAGAGACGACTC+CGG + Chr7:83691195-83691214 MsG0780040870.01.T01:CDS 45.0%
CGATAGGGTTATCCTCTGTT+GGG - Chr7:83691099-83691118 None:intergenic 45.0%
GAATTGGATCTGACTCTGAG+TGG - Chr7:83691150-83691169 None:intergenic 45.0%
GCGAAGAGAGACAAACACTT+CGG - Chr7:83691013-83691032 None:intergenic 45.0%
GCGCATCTTCTTCTGAACAT+CGG - Chr7:83691248-83691267 None:intergenic 45.0%
GTCTGTATTACAAGGACCTG+AGG + Chr7:83691436-83691455 MsG0780040870.01.T01:intron 45.0%
TCAGCAGTTGAAGTAGGAGT+AGG - Chr7:83691598-83691617 None:intergenic 45.0%
TCGATAGGGTTATCCTCTGT+TGG - Chr7:83691100-83691119 None:intergenic 45.0%
TGAATCAATCCACAGCTTGG+AGG - Chr7:83692317-83692336 None:intergenic 45.0%
TGTCATGCTGATCCAGAATC+TGG + Chr7:83692601-83692620 MsG0780040870.01.T01:three_prime_UTR 45.0%
TGTCTACCAGCAACGAAACA+TGG - Chr7:83692985-83693004 None:intergenic 45.0%
! ACCAATCAGGCACTACCTTT+TGG - Chr7:83692568-83692587 None:intergenic 45.0%
! CACTTCGGAAGTACAATCGA+TGG - Chr7:83690998-83691017 None:intergenic 45.0%
! CGATGGCTGCTCTTTTTCTT+CGG - Chr7:83690981-83691000 None:intergenic 45.0%
! CTTCTCACTACCGATAATGG+CGG + Chr7:83692799-83692818 MsG0780040870.01.T01:three_prime_UTR 45.0%
! GATGGCTGCTCTTTTTCTTC+GGG - Chr7:83690980-83690999 None:intergenic 45.0%
! GGGTCAACAGTTTTGCTTCT+TGG + Chr7:83693400-83693419 MsG0780040870.01.T01:three_prime_UTR 45.0%
!! GTAGCCTGCTTTTGTTGTCT+CGG + Chr7:83692348-83692367 MsG0780040870.01.T01:three_prime_UTR 45.0%
!!! ATCCTCGTCTTTTTTCCCTC+AGG - Chr7:83691455-83691474 None:intergenic 45.0%
!!! CATATGTTTTGGGGAGAGGT+GGG + Chr7:83692700-83692719 MsG0780040870.01.T01:three_prime_UTR 45.0%
!!! TCATATGTTTTGGGGAGAGG+TGG + Chr7:83692699-83692718 MsG0780040870.01.T01:three_prime_UTR 45.0%
!! ATAAATCATATAAAAATTAA+AGG - Chr7:83692133-83692152 None:intergenic 5.0%
AACATCGGAAAGTGGAGCGT+CGG - Chr7:83691233-83691252 None:intergenic 50.0%
AGACGAGGATCTGAAGAGGA+AGG + Chr7:83691465-83691484 MsG0780040870.01.T01:intron 50.0%
AGCGTAATTCACGAGCCGAA+AGG + Chr7:83691314-83691333 MsG0780040870.01.T01:CDS 50.0%
AGGATCTGAAGAGGAAGGCT+AGG + Chr7:83691470-83691489 MsG0780040870.01.T01:intron 50.0%
ATCCTCTGTTGGGTTTCCGT+TGG - Chr7:83691089-83691108 None:intergenic 50.0%
ATCTGACTCTGAGTGGGGTT+TGG - Chr7:83691143-83691162 None:intergenic 50.0%
GACCTGAGGGAAAAAAGACG+AGG + Chr7:83691450-83691469 MsG0780040870.01.T01:intron 50.0%
GCCAAAAGGTAGTGCCTGAT+TGG + Chr7:83692564-83692583 MsG0780040870.01.T01:three_prime_UTR 50.0%
GCTCACTAGGTGACACCTTT+GGG + Chr7:83692376-83692395 MsG0780040870.01.T01:three_prime_UTR 50.0%
GGATCACCATGTTTCGTTGC+TGG + Chr7:83692976-83692995 MsG0780040870.01.T01:three_prime_UTR 50.0%
GGATCTGAAGAGGAAGGCTA+GGG + Chr7:83691471-83691490 MsG0780040870.01.T01:intron 50.0%
GGCACTGCGTCTGTATTACA+AGG + Chr7:83691428-83691447 MsG0780040870.01.T01:intron 50.0%
GTCGTCGTCAGCATCTTTGT+CGG - Chr7:83691176-83691195 None:intergenic 50.0%
TAATACCGAAACGTTCGGCG+CGG - Chr7:83691270-83691289 None:intergenic 50.0%
TCAATCCACAGCTTGGAGGA+AGG - Chr7:83692313-83692332 None:intergenic 50.0%
TCTGACTCTGAGTGGGGTTT+GGG - Chr7:83691142-83691161 None:intergenic 50.0%
TGATACCTTCCTCCAAGCTG+TGG + Chr7:83692305-83692324 MsG0780040870.01.T01:three_prime_UTR 50.0%
TTCTTCAGCAGGATCGGTCT+TGG - Chr7:83691671-83691690 None:intergenic 50.0%
! TGGGGTCTAGGGTTTCGATA+GGG - Chr7:83691114-83691133 None:intergenic 50.0%
!! AAGGTATTGGAGGTGGCGAA+AGG - Chr7:83691882-83691901 None:intergenic 50.0%
!! AGGTATTGGAGGTGGCGAAA+GGG - Chr7:83691881-83691900 None:intergenic 50.0%
!! TCTTGCTAGGTTTGCTGCAC+CGG + Chr7:83691642-83691661 MsG0780040870.01.T01:CDS 50.0%
!! TGTCTCGGTATTGGCTCACT+AGG + Chr7:83692363-83692382 MsG0780040870.01.T01:three_prime_UTR 50.0%
CACCAACGGAAACCCAACAG+AGG + Chr7:83691084-83691103 MsG0780040870.01.T01:CDS 55.0%
CTCTGTTGGGTTTCCGTTGG+TGG - Chr7:83691086-83691105 None:intergenic 55.0%
GAATGATAGGCGGCTGTTGC+TGG + Chr7:83691980-83691999 MsG0780040870.01.T01:intron 55.0%
GCATCTTTGTCGGCGGGAAT+TGG - Chr7:83691166-83691185 None:intergenic 55.0%
GGAAGGGGTTGCCATTGGAT+TGG - Chr7:83691047-83691066 None:intergenic 55.0%
GGCTCACTAGGTGACACCTT+TGG + Chr7:83692375-83692394 MsG0780040870.01.T01:three_prime_UTR 55.0%
GTCGTCAGCATCTTTGTCGG+CGG - Chr7:83691173-83691192 None:intergenic 55.0%
TCGTCAGCATCTTTGTCGGC+GGG - Chr7:83691172-83691191 None:intergenic 55.0%
TTCAGCCGGAGTCGTCTCTT+TGG - Chr7:83691203-83691222 None:intergenic 55.0%
TTGCTGGCAATGCTGGAGGA+GGG + Chr7:83691996-83692015 MsG0780040870.01.T01:CDS 55.0%
TTTGGGTGAGGTGGGGTCTA+GGG - Chr7:83691125-83691144 None:intergenic 55.0%
! GTGGGGTCTAGGGTTTCGAT+AGG - Chr7:83691115-83691134 None:intergenic 55.0%
! TGTTGGGTTTCCGTTGGTGG+TGG - Chr7:83691083-83691102 None:intergenic 55.0%
!! CTTGCTAGGTTTGCTGCACC+GGG + Chr7:83691643-83691662 MsG0780040870.01.T01:CDS 55.0%
!! GAAAGTGGAGCGTCGGTTTC+AGG - Chr7:83691226-83691245 None:intergenic 55.0%
!! GTTTCCGTTGGTGGTGGTTG+CGG - Chr7:83691077-83691096 None:intergenic 55.0%
AGAGGAAGGCTAGGGCAGAG+AGG + Chr7:83691479-83691498 MsG0780040870.01.T01:intron 60.0%
AGGTGGCGAAAGGGCCTTAC+AGG - Chr7:83691872-83691891 None:intergenic 60.0%
AGTGGGGTTTGGGTGAGGTG+GGG - Chr7:83691132-83691151 None:intergenic 60.0%
CTCTGAGTGGGGTTTGGGTG+AGG - Chr7:83691137-83691156 None:intergenic 60.0%
GAGTGGGGTTTGGGTGAGGT+GGG - Chr7:83691133-83691152 None:intergenic 60.0%
GCAGGATCGGTCTTGGAACC+CGG - Chr7:83691664-83691683 None:intergenic 60.0%
GCTGTTGCTGGCAATGCTGG+AGG + Chr7:83691992-83692011 MsG0780040870.01.T01:CDS 60.0%
GTTGCTGGCAATGCTGGAGG+AGG + Chr7:83691995-83692014 MsG0780040870.01.T01:CDS 60.0%
GTTTGGGTGAGGTGGGGTCT+AGG - Chr7:83691126-83691145 None:intergenic 60.0%
TGAGTGGGGTTTGGGTGAGG+TGG - Chr7:83691134-83691153 None:intergenic 60.0%
!! GCGTCGGTTTCAGGTTCAGC+CGG - Chr7:83691217-83691236 None:intergenic 60.0%
ACCGCCGCAACCACCACCAA+CGG + Chr7:83691070-83691089 MsG0780040870.01.T01:CDS 65.0%
ATGCGCCGCGCCGAACGTTT+CGG + Chr7:83691262-83691281 MsG0780040870.01.T01:CDS 65.0%
GCGGCTGTTGCTGGCAATGC+TGG + Chr7:83691989-83692008 MsG0780040870.01.T01:CDS 65.0%
! GTGGCGGAAGGGGTTGCCAT+TGG - Chr7:83691052-83691071 None:intergenic 65.0%
!! TCCGTTGGTGGTGGTTGCGG+CGG - Chr7:83691074-83691093 None:intergenic 65.0%
!! GTTGGTGGTGGTTGCGGCGG+TGG - Chr7:83691071-83691090 None:intergenic 70.0%
!! TGGTTGCGGCGGTGGCGGAA+GGG - Chr7:83691063-83691082 None:intergenic 70.0%
! GGTGGTGGTTGCGGCGGTGG+CGG - Chr7:83691068-83691087 None:intergenic 75.0%
!! GGTTGCGGCGGTGGCGGAAG+GGG - Chr7:83691062-83691081 None:intergenic 75.0%
!! GTGGTTGCGGCGGTGGCGGA+AGG - Chr7:83691064-83691083 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr7 gene 83690857 83693533 83690857 ID=MsG0780040870.01;Name=MsG0780040870.01
Chr7 mRNA 83690857 83693533 83690857 ID=MsG0780040870.01.T01;Parent=MsG0780040870.01;Name=MsG0780040870.01.T01;_AED=0.49;_eAED=0.49;_QI=195|0.75|1|1|0.75|0.6|5|1372|170
Chr7 exon 83690857 83691335 83690857 ID=MsG0780040870.01.T01:exon:19877;Parent=MsG0780040870.01.T01
Chr7 exon 83691585 83691716 83691585 ID=MsG0780040870.01.T01:exon:19878;Parent=MsG0780040870.01.T01
Chr7 exon 83691811 83691871 83691811 ID=MsG0780040870.01.T01:exon:19879;Parent=MsG0780040870.01.T01
Chr7 exon 83691989 83692070 83691989 ID=MsG0780040870.01.T01:exon:19880;Parent=MsG0780040870.01.T01
Chr7 exon 83692208 83693533 83692208 ID=MsG0780040870.01.T01:exon:19881;Parent=MsG0780040870.01.T01
Chr7 five_prime_UTR 83690857 83691051 83690857 ID=MsG0780040870.01.T01:five_prime_utr;Parent=MsG0780040870.01.T01
Chr7 CDS 83691052 83691335 83691052 ID=MsG0780040870.01.T01:cds;Parent=MsG0780040870.01.T01
Chr7 CDS 83691585 83691716 83691585 ID=MsG0780040870.01.T01:cds;Parent=MsG0780040870.01.T01
Chr7 CDS 83691811 83691871 83691811 ID=MsG0780040870.01.T01:cds;Parent=MsG0780040870.01.T01
Chr7 CDS 83691989 83692024 83691989 ID=MsG0780040870.01.T01:cds;Parent=MsG0780040870.01.T01
Chr7 three_prime_UTR 83692025 83692070 83692025 ID=MsG0780040870.01.T01:three_prime_utr;Parent=MsG0780040870.01.T01
Chr7 three_prime_UTR 83692208 83693533 83692208 ID=MsG0780040870.01.T01:three_prime_utr;Parent=MsG0780040870.01.T01
Gene Sequence

>MsG0780040870.01.T01

ATGGCAACCCCTTCCGCCACCGCCGCAACCACCACCAACGGAAACCCAACAGAGGATAACCCTATCGAAACCCTAGACCCCACCTCACCCAAACCCCACTCAGAGTCAGATCCAATTCCCGCCGACAAAGATGCTGACGACGACAAATCCAAAGAGACGACTCCGGCTGAACCTGAAACCGACGCTCCACTTTCCGATGTTCAGAAGAAGATGCGCCGCGCCGAACGTTTCGGTATTACCGTTAAGTTATCTGAGAAAGAAAAGCGTAATTCACGAGCCGAAAGGTTTGGAATGCCTACTCCTACTTCAACTGCTGATGATGATGCAAAGAAGAAAGCTCGTCTTGCTAGGTTTGCTGCACCGGGTTCCAAGACCGATCCTGCTGAAGAAGATAAAAAGAAAGCAAGAGCACTTAGGTTTTCAAATGCATCATCAAAACCTTTGTCTCAAGTCAATTCTGAGGCTAACATTGAGCCTGCGGCTGTTGCTGGCAATGCTGGAGGAGGGACTTGA
Protein sequence

>MsG0780040870.01.T01

MATPSATAATTTNGNPTEDNPIETLDPTSPKPHSESDPIPADKDADDDKSKETTPAEPETDAPLSDVQKKMRRAERFGITVKLSEKEKRNSRAERFGMPTPTSTADDDAKKKARLARFAAPGSKTDPAEEDKKKARALRFSNASSKPLSQVNSEANIEPAAVAGNAGGGT*