AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041077.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041077.01.T01 MTR_7g103630 98.777 327 4 0 1 327 1 327 0.0 670
MsG0780041077.01.T01 MTR_2g084715 60.377 318 87 4 1 305 1 292 1.07e-118 345
MsG0780041077.01.T01 MTR_1g035130 72.362 199 41 2 1 199 1 185 1.66e-106 312
MsG0780041077.01.T01 MTR_2g005450 36.612 183 93 3 9 186 184 348 4.57e-35 135
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041077.01.T01 AT5G42820 64.026 303 83 5 1 298 1 282 2.79e-115 335
MsG0780041077.01.T01 AT5G42820 64.026 303 83 5 1 298 1 282 2.79e-115 335
MsG0780041077.01.T01 AT1G27650 65.461 304 74 7 1 292 1 285 5.06e-113 330
MsG0780041077.01.T01 AT1G27650 59.843 254 71 7 51 292 1 235 1.92e-73 227
MsG0780041077.01.T01 AT1G10320 34.426 183 97 3 9 186 228 392 1.51e-34 134
MsG0780041077.01.T01 AT1G10320 34.426 183 97 3 9 186 237 401 1.69e-34 134
MsG0780041077.01.T01 AT3G44785 65.753 73 24 1 1 73 1 72 3.90e-29 107

Find 91 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTGTTCTTGGAGTTTATC+AGG 0.235787 7:-86173515 None:intergenic
TATGAGGGGCGTTCGTATTC+TGG 0.248763 7:+86175448 MsG0780041077.01.T01:CDS
CTTGAATATTTGTGACAATT+TGG 0.267256 7:+86173691 MsG0780041077.01.T01:CDS
GATTTGAGGAAGCGATTATT+TGG 0.276417 7:+86175358 MsG0780041077.01.T01:CDS
TTATCAGGGTCAAGAGATTC+AGG 0.286148 7:-86173500 None:intergenic
TGCCGAGGACTACGGCTTCT+TGG 0.303158 7:-86175526 None:intergenic
TACATACATCGAAGTGTTCT+TGG 0.310686 7:-86173526 None:intergenic
TCGTATTCTGGCCGTGGTTC+TGG 0.312884 7:+86175460 MsG0780041077.01.T01:CDS
GAGAAGGAAGTTGGAGATTC+TGG 0.338699 7:+86175661 MsG0780041077.01.T01:CDS
TGAGGTTGTTGAGGTTGATT+AGG 0.344172 7:-86173458 None:intergenic
GAGCATTTAGCATCGATATT+CGG 0.354185 7:+86173269 MsG0780041077.01.T01:CDS
CTTTCTCTTTCTCCTCTGAT+AGG 0.355688 7:-86175598 None:intergenic
TGAGGTGGTTGAGGAGGTTG+AGG 0.362652 7:-86173476 None:intergenic
CTTTCTCCTCTGATAGGATT+CGG 0.367164 7:-86175592 None:intergenic
TGGTTCTGGTAGAAGGGATT+TGG 0.369893 7:+86175474 MsG0780041077.01.T01:CDS
CCCTCATAGTTACGATTTCT+CGG 0.370767 7:-86175433 None:intergenic
CTGGCCGTGGTTCTGGTAGA+AGG 0.372740 7:+86175467 MsG0780041077.01.T01:CDS
GATTCAGGTTGAGGTGGTTG+AGG 0.376296 7:-86173485 None:intergenic
ATAAAGTTAAGGTTCATATC+AGG 0.384960 7:-86173425 None:intergenic
TTTGAGGAGCTGAGCAAGTA+TGG 0.394906 7:+86173656 MsG0780041077.01.T01:CDS
GAGTAGGATTGATAAAGTTA+AGG 0.396234 7:-86173436 None:intergenic
GGCTTCTTGGCCTTCTACCA+TGG 0.400878 7:-86175513 None:intergenic
CTAGAATAGAACAATGGAAC+AGG 0.401571 7:+86175638 MsG0780041077.01.T01:CDS
TGTTGACTTCTCTCCTGTTA+CGG 0.406173 7:+86175150 MsG0780041077.01.T01:CDS
GCTTCTCGAAAATCCGTAAC+AGG 0.408045 7:-86175163 None:intergenic
TGACAATTTGGCTGATCATA+TGG 0.424836 7:+86173703 MsG0780041077.01.T01:CDS
AGTAGGACTAATGGTGGGTT+TGG 0.429071 7:-86173375 None:intergenic
CTCATGGCTCCCATGGTAGA+AGG 0.441236 7:+86175503 MsG0780041077.01.T01:CDS
TGTTGAGGTTGATTAGGAGT+AGG 0.451883 7:-86173452 None:intergenic
CCTTTGATTTCAGAGATTTG+AGG 0.452267 7:+86175344 MsG0780041077.01.T01:intron
GATTATTTGGAAGAAGTAGT+AGG 0.454782 7:+86175371 MsG0780041077.01.T01:CDS
CCTCATAGTTACGATTTCTC+GGG 0.458427 7:-86175432 None:intergenic
TGCATCTAAAGAAGATTAGC+AGG 0.461797 7:+86175242 MsG0780041077.01.T01:CDS
CCCGAGAAATCGTAACTATG+AGG 0.480351 7:+86175432 MsG0780041077.01.T01:CDS
TCAGGTTGAGGTGGTTGAGG+AGG 0.483616 7:-86173482 None:intergenic
AAAGAGAAAGTAGTGTAGAA+AGG 0.483749 7:+86175611 MsG0780041077.01.T01:CDS
TGGAACAGGGAGAAGGAAGT+TGG 0.485919 7:+86175652 MsG0780041077.01.T01:CDS
GGAGAGAAGTCAACAATGAT+TGG 0.494146 7:-86175142 None:intergenic
GGACTCCTGTCTCTTCCCAT+TGG 0.497688 7:-86175571 None:intergenic
GCTCCGATCTTGAAGTAGAA+TGG 0.500982 7:-86173317 None:intergenic
CTCATAGTTACGATTTCTCG+GGG 0.504601 7:-86175431 None:intergenic
CTGGTAGAAGGGATTTGGAC+AGG 0.507028 7:+86175479 MsG0780041077.01.T01:CDS
GGCCAAGAAGCCGTAGTCCT+CGG 0.507965 7:+86175524 MsG0780041077.01.T01:CDS
TGAGGAGGTTGAGGTTGTTG+AGG 0.510776 7:-86173467 None:intergenic
GCTTCTTGGCCTTCTACCAT+GGG 0.511138 7:-86175512 None:intergenic
GGGTCAAGAGATTCAGGTTG+AGG 0.514083 7:-86173494 None:intergenic
GGGCGTTCGTATTCTGGCCG+TGG 0.515780 7:+86175454 MsG0780041077.01.T01:CDS
TTGGAAGAAGTAGTAGGCGT+TGG 0.517691 7:+86175377 MsG0780041077.01.T01:CDS
GACAGGTCTCATGGCTCCCA+TGG 0.524520 7:+86175496 MsG0780041077.01.T01:CDS
GAGAACAAGAGTAGGACTAA+TGG 0.530039 7:-86173384 None:intergenic
AGGCGGAGTAGAAGTCCAAT+GGG 0.531064 7:+86175556 MsG0780041077.01.T01:CDS
ATCAGGACGTTGATACATGT+TGG 0.531267 7:-86173408 None:intergenic
GAAGTCCAATGGGAAGAGAC+AGG 0.531891 7:+86175566 MsG0780041077.01.T01:CDS
TGTATATGTTCAGTATAAAG+AGG 0.534599 7:+86173828 MsG0780041077.01.T01:CDS
ACCGTAGTGGAAGCAGAAGC+CGG 0.541010 7:+86175404 MsG0780041077.01.T01:CDS
TCCGGCTTCTGCTTCCACTA+CGG 0.545385 7:-86175405 None:intergenic
TGGCCGTGGTTCTGGTAGAA+GGG 0.546507 7:+86175468 MsG0780041077.01.T01:CDS
CCGAGAAATCGTAACTATGA+GGG 0.550258 7:+86175433 MsG0780041077.01.T01:CDS
AGGGATTTGGACAGGTCTCA+TGG 0.560557 7:+86175487 MsG0780041077.01.T01:CDS
AGTGTTCTTGGAGTTTATCA+GGG 0.562952 7:-86173514 None:intergenic
AACAATGATTATGAAGAGGC+GGG 0.563713 7:+86175703 MsG0780041077.01.T01:CDS
TTCCTCTATGCCGAGGACTA+CGG 0.567765 7:-86175534 None:intergenic
AATGCTCTTATGAATCTCAC+TGG 0.570244 7:+86173865 MsG0780041077.01.T01:CDS
TGTCCATTCTACTTCAAGAT+CGG 0.570630 7:+86173314 MsG0780041077.01.T01:CDS
AAGGCGGAGTAGAAGTCCAA+TGG 0.574467 7:+86175555 MsG0780041077.01.T01:CDS
AGCCGTAGTCCTCGGCATAG+AGG 0.581691 7:+86175532 MsG0780041077.01.T01:CDS
AGAACAATGGAACAGGGAGA+AGG 0.596602 7:+86175645 MsG0780041077.01.T01:CDS
TCATAAGAGCATTAGCAGCA+TGG 0.602037 7:-86173855 None:intergenic
GTAGTCCTCGGCATAGAGGA+AGG 0.603594 7:+86175536 MsG0780041077.01.T01:CDS
TAACAATGATTATGAAGAGG+CGG 0.605105 7:+86175702 MsG0780041077.01.T01:CDS
AGAAGTCAACAATGATTGGT+CGG 0.606403 7:-86175138 None:intergenic
CATAGTTACGATTTCTCGGG+GGG 0.607441 7:-86175429 None:intergenic
AACAAGAGTAGGACTAATGG+TGG 0.614682 7:-86173381 None:intergenic
TCAAGAGATTCAGGTTGAGG+TGG 0.615585 7:-86173491 None:intergenic
AAGATCGGAGCTTGTAGACA+TGG 0.618937 7:+86173329 MsG0780041077.01.T01:CDS
CTCCGCCTTCCTCTATGCCG+AGG 0.622022 7:-86175541 None:intergenic
GAGTAACAATGATTATGAAG+AGG 0.626539 7:+86175699 MsG0780041077.01.T01:CDS
AGTTGGAGATTCTGGTAACA+AGG 0.630652 7:+86175669 MsG0780041077.01.T01:CDS
AGGAGTCCGAATCCTATCAG+AGG 0.630679 7:+86175586 MsG0780041077.01.T01:CDS
CGAGAAATCGTAACTATGAG+GGG 0.636005 7:+86175434 MsG0780041077.01.T01:CDS
GAAGAGAATGTATGCAATCG+AGG 0.636366 7:+86175202 MsG0780041077.01.T01:CDS
ATGTTGGAGAGAACAAGAGT+AGG 0.650220 7:-86173392 None:intergenic
TCATAGTTACGATTTCTCGG+GGG 0.654148 7:-86175430 None:intergenic
GGAGAGCTAGAATAGAACAA+TGG 0.656515 7:+86175632 MsG0780041077.01.T01:CDS
AGGCGTTGGAATGACCGTAG+TGG 0.684717 7:+86175391 MsG0780041077.01.T01:CDS
TAGAATAGAACAATGGAACA+GGG 0.687714 7:+86175639 MsG0780041077.01.T01:CDS
AATCCCTTCTACCAGAACCA+CGG 0.694334 7:-86175471 None:intergenic
ACAAGAGTAGGACTAATGGT+GGG 0.704223 7:-86173380 None:intergenic
GAGAATGTATGCAATCGAGG+TGG 0.723621 7:+86175205 MsG0780041077.01.T01:CDS
GTCCTCGGCATAGAGGAAGG+CGG 0.728288 7:+86175539 MsG0780041077.01.T01:CDS
TGGTATGAAGACGAGAACAG+CGG 0.740225 7:-86173355 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAAAAATCATAAAAATT+AGG - Chr7:86173791-86173810 None:intergenic 10.0%
!! AACAAAAATCATAAAAATTA+GGG - Chr7:86173790-86173809 None:intergenic 10.0%
!! TATATATATATATGATGATT+TGG + Chr7:86173996-86174015 MsG0780041077.01.T01:intron 10.0%
!!! ATGATTTTTGTTTTTTTTAT+AGG + Chr7:86173798-86173817 MsG0780041077.01.T01:intron 10.0%
!! AAAAAGAAAATTACAATTGT+GGG - Chr7:86174883-86174902 None:intergenic 15.0%
!! CAAATATTAATGATTATTTC+AGG + Chr7:86174984-86175003 MsG0780041077.01.T01:intron 15.0%
!!! TTTTTGTTTTTTTTATAGGT+TGG + Chr7:86173802-86173821 MsG0780041077.01.T01:intron 15.0%
!! AAAAAATTGAAGAAGAGAAA+AGG - Chr7:86173572-86173591 None:intergenic 20.0%
!! AAAAATTGAAGAAGAGAAAA+GGG - Chr7:86173571-86173590 None:intergenic 20.0%
!! GAAAAAGAAAATTACAATTG+TGG - Chr7:86174884-86174903 None:intergenic 20.0%
!! TTCATAAATCAAAAAGAGAA+AGG - Chr7:86173743-86173762 None:intergenic 20.0%
!! TTTAGATTGAGATATTCAAT+TGG + Chr7:86174623-86174642 MsG0780041077.01.T01:intron 20.0%
!!! AAAAATTGAAAAGCATGAAT+AGG - Chr7:86175285-86175304 None:intergenic 20.0%
!!! TATTAATGATTATTTCAGGT+AGG + Chr7:86174988-86175007 MsG0780041077.01.T01:intron 20.0%
!!! TTTTTATGAAGATCTATTTG+AGG + Chr7:86173640-86173659 MsG0780041077.01.T01:CDS 20.0%
!!! TTTTTCTAAGACAAACTATT+AGG + Chr7:86174416-86174435 MsG0780041077.01.T01:intron 20.0%
!!! TTTTTTTTTTTTTTCCTTCC+TGG + Chr7:86174855-86174874 MsG0780041077.01.T01:intron 20.0%
! AAAATTGAAGAAGAGAAAAG+GGG - Chr7:86173570-86173589 None:intergenic 25.0%
! ACATGACATATATTGAAACA+TGG - Chr7:86174102-86174121 None:intergenic 25.0%
! ACTAAAGGCAATATTCATAT+TGG + Chr7:86174584-86174603 MsG0780041077.01.T01:intron 25.0%
! ATAAAGTTAAGGTTCATATC+AGG - Chr7:86173428-86173447 None:intergenic 25.0%
! ATTGAGATATTCAATTGGTT+TGG + Chr7:86174628-86174647 MsG0780041077.01.T01:intron 25.0%
! CTTGAATATTTGTGACAATT+TGG + Chr7:86173691-86173710 MsG0780041077.01.T01:CDS 25.0%
! TGTATATGTTCAGTATAAAG+AGG + Chr7:86173828-86173847 MsG0780041077.01.T01:CDS 25.0%
! TTATTCAATTGTTTGTGCTT+TGG + Chr7:86174038-86174057 MsG0780041077.01.T01:intron 25.0%
!! TTATCTGATGGAATGATTTT+TGG + Chr7:86174726-86174745 MsG0780041077.01.T01:intron 25.0%
!!! CACTTGATTTATTTTTGTGT+TGG - Chr7:86174173-86174192 None:intergenic 25.0%
!!! TATATATGATGATTTGGTTG+TGG + Chr7:86174002-86174021 MsG0780041077.01.T01:intron 25.0%
AAAGAGAAAGTAGTGTAGAA+AGG + Chr7:86175611-86175630 MsG0780041077.01.T01:CDS 30.0%
AGACTAGAGATGATATGATT+AGG + Chr7:86174230-86174249 MsG0780041077.01.T01:intron 30.0%
CAATAAAAGTGGGTACAATA+AGG - Chr7:86174673-86174692 None:intergenic 30.0%
GAGTAACAATGATTATGAAG+AGG + Chr7:86175699-86175718 MsG0780041077.01.T01:CDS 30.0%
GAGTAGGATTGATAAAGTTA+AGG - Chr7:86173439-86173458 None:intergenic 30.0%
GATTATTTGGAAGAAGTAGT+AGG + Chr7:86175371-86175390 MsG0780041077.01.T01:CDS 30.0%
TAACAATGATTATGAAGAGG+CGG + Chr7:86175702-86175721 MsG0780041077.01.T01:CDS 30.0%
TAGAATAGAACAATGGAACA+GGG + Chr7:86175639-86175658 MsG0780041077.01.T01:CDS 30.0%
TATTGCCTTTAGTTACACAA+AGG - Chr7:86174577-86174596 None:intergenic 30.0%
TGAATCCTTTGTGTAACTAA+AGG + Chr7:86174569-86174588 MsG0780041077.01.T01:intron 30.0%
TGGTACATGATAGAACATTA+TGG + Chr7:86174473-86174492 MsG0780041077.01.T01:intron 30.0%
! CAACTTTAGAGAGATAGTTA+GGG + Chr7:86174258-86174277 MsG0780041077.01.T01:intron 30.0%
! TAATGAGTTGGATCGAAATT+TGG + Chr7:86174453-86174472 MsG0780041077.01.T01:intron 30.0%
!! AATCTCTGAAATCAAAGGTA+AGG - Chr7:86175342-86175361 None:intergenic 30.0%
!! CTTATTGTACCCACTTTTAT+TGG + Chr7:86174671-86174690 MsG0780041077.01.T01:intron 30.0%
!! TGATGGAATGATTTTTGGAT+AGG + Chr7:86174731-86174750 MsG0780041077.01.T01:intron 30.0%
!!! AGGTTCTGAATTTTGTAGTT+AGG + Chr7:86173900-86173919 MsG0780041077.01.T01:intron 30.0%
!!! GGTTCTGAATTTTGTAGTTA+GGG + Chr7:86173901-86173920 MsG0780041077.01.T01:intron 30.0%
AAATTACAATTGTGGGTACC+AGG - Chr7:86174876-86174895 None:intergenic 35.0%
AACAATGATTATGAAGAGGC+GGG + Chr7:86175703-86175722 MsG0780041077.01.T01:CDS 35.0%
AAGCAATGATAGACAATGCA+CGG - Chr7:86175064-86175083 None:intergenic 35.0%
AAGTGTTCTTGGAGTTTATC+AGG - Chr7:86173518-86173537 None:intergenic 35.0%
AATGCTCTTATGAATCTCAC+TGG + Chr7:86173865-86173884 MsG0780041077.01.T01:CDS 35.0%
ACTCCCAAAATGAGTAAGAA+GGG - Chr7:86174697-86174716 None:intergenic 35.0%
AGAAGTCAACAATGATTGGT+CGG - Chr7:86175141-86175160 None:intergenic 35.0%
AGCACTTACAGTAGAAAAGA+TGG + Chr7:86174282-86174301 MsG0780041077.01.T01:intron 35.0%
AGTGTTCTTGGAGTTTATCA+GGG - Chr7:86173517-86173536 None:intergenic 35.0%
ATTCCATCAGATAAAGCTCA+AGG - Chr7:86174720-86174739 None:intergenic 35.0%
CTAGAATAGAACAATGGAAC+AGG + Chr7:86175638-86175657 MsG0780041077.01.T01:CDS 35.0%
GACATGAGGATTAATTAGTG+AGG + Chr7:86174344-86174363 MsG0780041077.01.T01:intron 35.0%
GATTTGAGGAAGCGATTATT+TGG + Chr7:86175358-86175377 MsG0780041077.01.T01:CDS 35.0%
TAAGAAGGGCCAATAAAAGT+GGG - Chr7:86174683-86174702 None:intergenic 35.0%
TAGAAAAGATGGAGCAAACT+AGG + Chr7:86174293-86174312 MsG0780041077.01.T01:intron 35.0%
TATATACGTTGAAACACGAG+TGG - Chr7:86174138-86174157 None:intergenic 35.0%
TGACAATTTGGCTGATCATA+TGG + Chr7:86173703-86173722 MsG0780041077.01.T01:CDS 35.0%
TGCATCTAAAGAAGATTAGC+AGG + Chr7:86175242-86175261 MsG0780041077.01.T01:CDS 35.0%
TGTCCATTCTACTTCAAGAT+CGG + Chr7:86173314-86173333 MsG0780041077.01.T01:CDS 35.0%
TTGCTACTGACATTGTGATT+TGG + Chr7:86175099-86175118 MsG0780041077.01.T01:intron 35.0%
! AAAAGCATGAATAGGCTATG+TGG - Chr7:86175277-86175296 None:intergenic 35.0%
! CCAACTTTAGAGAGATAGTT+AGG + Chr7:86174257-86174276 MsG0780041077.01.T01:intron 35.0%
! CCTTTGATTTCAGAGATTTG+AGG + Chr7:86175344-86175363 MsG0780041077.01.T01:intron 35.0%
! CTCACTGGAAGATTTTATTC+AGG + Chr7:86173880-86173899 MsG0780041077.01.T01:CDS 35.0%
! TACATACATCGAAGTGTTCT+TGG - Chr7:86173529-86173548 None:intergenic 35.0%
!! ATTTTCGAGAAGCTACTTGT+AGG + Chr7:86175173-86175192 MsG0780041077.01.T01:CDS 35.0%
!! CCTAACTATCTCTCTAAAGT+TGG - Chr7:86174260-86174279 None:intergenic 35.0%
!! CCTCAAATCTCTGAAATCAA+AGG - Chr7:86175347-86175366 None:intergenic 35.0%
!! GAGCATTTAGCATCGATATT+CGG + Chr7:86173269-86173288 MsG0780041077.01.T01:CDS 35.0%
AACAAGAGTAGGACTAATGG+TGG - Chr7:86173384-86173403 None:intergenic 40.0%
AATCAAGTGTAGCAAAGACG+AGG + Chr7:86174184-86174203 MsG0780041077.01.T01:intron 40.0%
ACAAGAGTAGGACTAATGGT+GGG - Chr7:86173383-86173402 None:intergenic 40.0%
ACAAGCAGTAAGGACAACAT+TGG - Chr7:86174816-86174835 None:intergenic 40.0%
ACATGTAGAGAGAAGACATG+AGG + Chr7:86174330-86174349 MsG0780041077.01.T01:intron 40.0%
AGATCCAGAGACTAATGAGT+TGG + Chr7:86174441-86174460 MsG0780041077.01.T01:intron 40.0%
AGTATTGTTTGGCTGAGATG+AGG + Chr7:86174932-86174951 MsG0780041077.01.T01:intron 40.0%
AGTTGGAGATTCTGGTAACA+AGG + Chr7:86175669-86175688 MsG0780041077.01.T01:CDS 40.0%
ATCAAGTGTAGCAAAGACGA+GGG + Chr7:86174185-86174204 MsG0780041077.01.T01:intron 40.0%
ATCAGGACGTTGATACATGT+TGG - Chr7:86173411-86173430 None:intergenic 40.0%
ATGTTGGAGAGAACAAGAGT+AGG - Chr7:86173395-86173414 None:intergenic 40.0%
CAGCCAAACAATACTGAACT+CGG - Chr7:86174927-86174946 None:intergenic 40.0%
CCCTCATAGTTACGATTTCT+CGG - Chr7:86175436-86175455 None:intergenic 40.0%
CCGAGAAATCGTAACTATGA+GGG + Chr7:86175433-86175452 MsG0780041077.01.T01:CDS 40.0%
CCTCATAGTTACGATTTCTC+GGG - Chr7:86175435-86175454 None:intergenic 40.0%
CGAGAAATCGTAACTATGAG+GGG + Chr7:86175434-86175453 MsG0780041077.01.T01:CDS 40.0%
CTACCGAGTTCAGTATTGTT+TGG + Chr7:86174921-86174940 MsG0780041077.01.T01:intron 40.0%
CTCATAGTTACGATTTCTCG+GGG - Chr7:86175434-86175453 None:intergenic 40.0%
CTTTCTCCTCTGATAGGATT+CGG - Chr7:86175595-86175614 None:intergenic 40.0%
CTTTCTCTTTCTCCTCTGAT+AGG - Chr7:86175601-86175620 None:intergenic 40.0%
GAAGAGAATGTATGCAATCG+AGG + Chr7:86175202-86175221 MsG0780041077.01.T01:CDS 40.0%
GAAGGTAGTCAAATCACTAG+AGG + Chr7:86174382-86174401 MsG0780041077.01.T01:intron 40.0%
GACTCCCAAAATGAGTAAGA+AGG - Chr7:86174698-86174717 None:intergenic 40.0%
GAGAACAAGAGTAGGACTAA+TGG - Chr7:86173387-86173406 None:intergenic 40.0%
GATTTGGCTGTCATTCTTCT+AGG + Chr7:86175115-86175134 MsG0780041077.01.T01:intron 40.0%
GGAGAGAAGTCAACAATGAT+TGG - Chr7:86175145-86175164 None:intergenic 40.0%
GGAGAGCTAGAATAGAACAA+TGG + Chr7:86175632-86175651 MsG0780041077.01.T01:CDS 40.0%
GGGTGTTAGCATTTGATGTA+TGG + Chr7:86174205-86174224 MsG0780041077.01.T01:intron 40.0%
GTAAGAAGGGCCAATAAAAG+TGG - Chr7:86174684-86174703 None:intergenic 40.0%
TCATAGTTACGATTTCTCGG+GGG - Chr7:86175433-86175452 None:intergenic 40.0%
TGCAAACAACACAAGCAGTA+AGG - Chr7:86174826-86174845 None:intergenic 40.0%
TTATCAGGGTCAAGAGATTC+AGG - Chr7:86173503-86173522 None:intergenic 40.0%
! AGTCCTTGAGCTTTATCTGA+TGG + Chr7:86174714-86174733 MsG0780041077.01.T01:intron 40.0%
! GATGCGTGATCTGATAATGA+TGG + Chr7:86174074-86174093 MsG0780041077.01.T01:intron 40.0%
! TGAGGTTGTTGAGGTTGATT+AGG - Chr7:86173461-86173480 None:intergenic 40.0%
! TGGCCCTTCTTACTCATTTT+GGG + Chr7:86174691-86174710 MsG0780041077.01.T01:intron 40.0%
! TGTTGAGGTTGATTAGGAGT+AGG - Chr7:86173455-86173474 None:intergenic 40.0%
! TTGGCCCTTCTTACTCATTT+TGG + Chr7:86174690-86174709 MsG0780041077.01.T01:intron 40.0%
!! TCATAAGAGCATTAGCAGCA+TGG - Chr7:86173858-86173877 None:intergenic 40.0%
!! TGTTGACTTCTCTCCTGTTA+CGG + Chr7:86175150-86175169 MsG0780041077.01.T01:CDS 40.0%
AAACCTTACCCCACCAAATG+GGG - Chr7:86174522-86174541 None:intergenic 45.0%
AAGATCGGAGCTTGTAGACA+TGG + Chr7:86173329-86173348 MsG0780041077.01.T01:CDS 45.0%
AATCCCTTCTACCAGAACCA+CGG - Chr7:86175474-86175493 None:intergenic 45.0%
AATGTCAGTAGCAATGAGCG+AGG - Chr7:86175093-86175112 None:intergenic 45.0%
AGAACAATGGAACAGGGAGA+AGG + Chr7:86175645-86175664 MsG0780041077.01.T01:CDS 45.0%
AGATGGAGCAAACTAGGCTT+AGG + Chr7:86174299-86174318 MsG0780041077.01.T01:intron 45.0%
AGGAGAGTCAATCAGATGGA+AGG + Chr7:86174364-86174383 MsG0780041077.01.T01:intron 45.0%
AGTGAGGAGAGTCAATCAGA+TGG + Chr7:86174360-86174379 MsG0780041077.01.T01:intron 45.0%
ATTTAGCCAACCCCATTTGG+TGG + Chr7:86174509-86174528 MsG0780041077.01.T01:intron 45.0%
CAAACCTTACCCCACCAAAT+GGG - Chr7:86174523-86174542 None:intergenic 45.0%
CAAACTAGGCTTAGGTGGTT+TGG + Chr7:86174307-86174326 MsG0780041077.01.T01:intron 45.0%
CATAGTTACGATTTCTCGGG+GGG - Chr7:86175432-86175451 None:intergenic 45.0%
CCCGAGAAATCGTAACTATG+AGG + Chr7:86175432-86175451 MsG0780041077.01.T01:CDS 45.0%
CTAAAAAATGGCAGCGAGTC+TGG + Chr7:86175727-86175746 MsG0780041077.01.T01:CDS 45.0%
GAGAAGGAAGTTGGAGATTC+TGG + Chr7:86175661-86175680 MsG0780041077.01.T01:CDS 45.0%
GAGAATGTATGCAATCGAGG+TGG + Chr7:86175205-86175224 MsG0780041077.01.T01:CDS 45.0%
GCTCCGATCTTGAAGTAGAA+TGG - Chr7:86173320-86173339 None:intergenic 45.0%
GCTTCTCGAAAATCCGTAAC+AGG - Chr7:86175166-86175185 None:intergenic 45.0%
GGTAGTCAAATCACTAGAGG+CGG + Chr7:86174385-86174404 MsG0780041077.01.T01:intron 45.0%
TACAATTGTGGGTACCAGGA+AGG - Chr7:86174872-86174891 None:intergenic 45.0%
TCCATTTAGCCAACCCCATT+TGG + Chr7:86174506-86174525 MsG0780041077.01.T01:intron 45.0%
TGGTATGAAGACGAGAACAG+CGG - Chr7:86173358-86173377 None:intergenic 45.0%
TTGGAAGAAGTAGTAGGCGT+TGG + Chr7:86175377-86175396 MsG0780041077.01.T01:CDS 45.0%
TTGGACAGTAGCAGATGTAC+TGG - Chr7:86174797-86174816 None:intergenic 45.0%
TTTAGCCAACCCCATTTGGT+GGG + Chr7:86174510-86174529 MsG0780041077.01.T01:intron 45.0%
TTTGAGGAGCTGAGCAAGTA+TGG + Chr7:86173656-86173675 MsG0780041077.01.T01:CDS 45.0%
! CGATCCAACTCATTAGTCTC+TGG - Chr7:86174448-86174467 None:intergenic 45.0%
!! ACCAAATGGGGTTGGCTAAA+TGG - Chr7:86174510-86174529 None:intergenic 45.0%
!! AGTAGGACTAATGGTGGGTT+TGG - Chr7:86173378-86173397 None:intergenic 45.0%
!! TCAAGAGATTCAGGTTGAGG+TGG - Chr7:86173494-86173513 None:intergenic 45.0%
!! TGGTTCTGGTAGAAGGGATT+TGG + Chr7:86175474-86175493 MsG0780041077.01.T01:CDS 45.0%
!!! CAGACTCGCTGCCATTTTTT+AGG - Chr7:86175729-86175748 None:intergenic 45.0%
!!! GATTTTTTTTTTTTTTTTTT+AGG + Chr7:86173616-86173635 MsG0780041077.01.T01:intron 5.0%
AAGGCGGAGTAGAAGTCCAA+TGG + Chr7:86175555-86175574 MsG0780041077.01.T01:CDS 50.0%
ACCATGTGTGACAGAGCACA+AGG - Chr7:86174759-86174778 None:intergenic 50.0%
ACCTTGTGCTCTGTCACACA+TGG + Chr7:86174755-86174774 MsG0780041077.01.T01:intron 50.0%
AGGAGTCCGAATCCTATCAG+AGG + Chr7:86175586-86175605 MsG0780041077.01.T01:CDS 50.0%
AGGCGGAGTAGAAGTCCAAT+GGG + Chr7:86175556-86175575 MsG0780041077.01.T01:CDS 50.0%
AGGGATTTGGACAGGTCTCA+TGG + Chr7:86175487-86175506 MsG0780041077.01.T01:CDS 50.0%
AGTCAAATCACTAGAGGCGG+AGG + Chr7:86174388-86174407 MsG0780041077.01.T01:intron 50.0%
CCAAACCTTACCCCACCAAA+TGG - Chr7:86174524-86174543 None:intergenic 50.0%
CTGGTAGAAGGGATTTGGAC+AGG + Chr7:86175479-86175498 MsG0780041077.01.T01:CDS 50.0%
GAAGAGGCGGGCCTAAAAAA+TGG + Chr7:86175715-86175734 MsG0780041077.01.T01:CDS 50.0%
GAAGTCCAATGGGAAGAGAC+AGG + Chr7:86175566-86175585 MsG0780041077.01.T01:CDS 50.0%
TGAGGAGGTTGAGGTTGTTG+AGG - Chr7:86173470-86173489 None:intergenic 50.0%
TGGAACAGGGAGAAGGAAGT+TGG + Chr7:86175652-86175671 MsG0780041077.01.T01:CDS 50.0%
TGGAGCAAACTAGGCTTAGG+TGG + Chr7:86174302-86174321 MsG0780041077.01.T01:intron 50.0%
TTCCTCTATGCCGAGGACTA+CGG - Chr7:86175537-86175556 None:intergenic 50.0%
! CCATTTGGTGGGGTAAGGTT+TGG + Chr7:86174521-86174540 MsG0780041077.01.T01:intron 50.0%
! GCTTCTTGGCCTTCTACCAT+GGG - Chr7:86175515-86175534 None:intergenic 50.0%
! TTAGCCAACCCCATTTGGTG+GGG + Chr7:86174511-86174530 MsG0780041077.01.T01:intron 50.0%
!! GATTCAGGTTGAGGTGGTTG+AGG - Chr7:86173488-86173507 None:intergenic 50.0%
!! GGGTCAAGAGATTCAGGTTG+AGG - Chr7:86173497-86173516 None:intergenic 50.0%
!! TATGAGGGGCGTTCGTATTC+TGG + Chr7:86175448-86175467 MsG0780041077.01.T01:CDS 50.0%
CTCATGGCTCCCATGGTAGA+AGG + Chr7:86175503-86175522 MsG0780041077.01.T01:CDS 55.0%
CTTACCCCACCAAATGGGGT+TGG - Chr7:86174518-86174537 None:intergenic 55.0%
GGACTCCTGTCTCTTCCCAT+TGG - Chr7:86175574-86175593 None:intergenic 55.0%
GTAGTCCTCGGCATAGAGGA+AGG + Chr7:86175536-86175555 MsG0780041077.01.T01:CDS 55.0%
TCCGGCTTCTGCTTCCACTA+CGG - Chr7:86175408-86175427 None:intergenic 55.0%
TCGTATTCTGGCCGTGGTTC+TGG + Chr7:86175460-86175479 MsG0780041077.01.T01:CDS 55.0%
TGAGGTGGTTGAGGAGGTTG+AGG - Chr7:86173479-86173498 None:intergenic 55.0%
! ACCGTAGTGGAAGCAGAAGC+CGG + Chr7:86175404-86175423 MsG0780041077.01.T01:CDS 55.0%
! CAACCCCATTTGGTGGGGTA+AGG + Chr7:86174516-86174535 MsG0780041077.01.T01:intron 55.0%
! GGCTTCTTGGCCTTCTACCA+TGG - Chr7:86175516-86175535 None:intergenic 55.0%
!! AGGCGTTGGAATGACCGTAG+TGG + Chr7:86175391-86175410 MsG0780041077.01.T01:CDS 55.0%
!! TCAGGTTGAGGTGGTTGAGG+AGG - Chr7:86173485-86173504 None:intergenic 55.0%
!! TGGCCGTGGTTCTGGTAGAA+GGG + Chr7:86175468-86175487 MsG0780041077.01.T01:CDS 55.0%
AGCCGTAGTCCTCGGCATAG+AGG + Chr7:86175532-86175551 MsG0780041077.01.T01:CDS 60.0%
GACAGGTCTCATGGCTCCCA+TGG + Chr7:86175496-86175515 MsG0780041077.01.T01:CDS 60.0%
GGCCAAGAAGCCGTAGTCCT+CGG + Chr7:86175524-86175543 MsG0780041077.01.T01:CDS 60.0%
GTCCTCGGCATAGAGGAAGG+CGG + Chr7:86175539-86175558 MsG0780041077.01.T01:CDS 60.0%
TACGATTTCTCGGGGGGCTC+CGG - Chr7:86175426-86175445 None:intergenic 60.0%
TGCCGAGGACTACGGCTTCT+TGG - Chr7:86175529-86175548 None:intergenic 60.0%
!! CTGGCCGTGGTTCTGGTAGA+AGG + Chr7:86175467-86175486 MsG0780041077.01.T01:CDS 60.0%
CTCCGCCTTCCTCTATGCCG+AGG - Chr7:86175544-86175563 None:intergenic 65.0%
GGGCGTTCGTATTCTGGCCG+TGG + Chr7:86175454-86175473 MsG0780041077.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 86173263 86175765 86173263 ID=MsG0780041077.01;Name=MsG0780041077.01
Chr7 mRNA 86173263 86175765 86173263 ID=MsG0780041077.01.T01;Parent=MsG0780041077.01;Name=MsG0780041077.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|5|0|327
Chr7 exon 86173263 86173541 86173263 ID=MsG0780041077.01.T01:exon:19594;Parent=MsG0780041077.01.T01
Chr7 exon 86173638 86173724 86173638 ID=MsG0780041077.01.T01:exon:19595;Parent=MsG0780041077.01.T01
Chr7 exon 86173820 86173901 86173820 ID=MsG0780041077.01.T01:exon:19596;Parent=MsG0780041077.01.T01
Chr7 exon 86175137 86175263 86175137 ID=MsG0780041077.01.T01:exon:19597;Parent=MsG0780041077.01.T01
Chr7 exon 86175357 86175765 86175357 ID=MsG0780041077.01.T01:exon:19598;Parent=MsG0780041077.01.T01
Chr7 CDS 86173263 86173541 86173263 ID=MsG0780041077.01.T01:cds;Parent=MsG0780041077.01.T01
Chr7 CDS 86173638 86173724 86173638 ID=MsG0780041077.01.T01:cds;Parent=MsG0780041077.01.T01
Chr7 CDS 86173820 86173901 86173820 ID=MsG0780041077.01.T01:cds;Parent=MsG0780041077.01.T01
Chr7 CDS 86175137 86175263 86175137 ID=MsG0780041077.01.T01:cds;Parent=MsG0780041077.01.T01
Chr7 CDS 86175357 86175765 86175357 ID=MsG0780041077.01.T01:cds;Parent=MsG0780041077.01.T01
Gene Sequence

>MsG0780041077.01.T01

ATGGCGGAGCATTTAGCATCGATATTCGGAACAGAGAAAGACAGAGTTAACTGTCCATTCTACTTCAAGATCGGAGCTTGTAGACATGGTGACCGCTGTTCTCGTCTTCATACCAAACCCACCATTAGTCCTACTCTTGTTCTCTCCAACATGTATCAACGTCCTGATATGAACCTTAACTTTATCAATCCTACTCCTAATCAACCTCAACAACCTCAACCTCCTCAACCACCTCAACCTGAATCTCTTGACCCTGATAAACTCCAAGAACACTTCGATGATTTTTATGAAGATCTATTTGAGGAGCTGAGCAAGTATGGTCAAATTCAGAGCTTGAATATTTGTGACAATTTGGCTGATCATATGGTTGGCAATGTATATGTTCAGTATAAAGAGGAAGACCATGCTGCTAATGCTCTTATGAATCTCACTGGAAGATTTTATTCAGGCCGACCAATCATTGTTGACTTCTCTCCTGTTACGGATTTTCGAGAAGCTACTTGTAGGCAGTACGAAGAGAATGTATGCAATCGAGGTGGCTACTGCAACTTTATGCATCTAAAGAAGATTAGCAGAGATTTGAGGAAGCGATTATTTGGAAGAAGTAGTAGGCGTTGGAATGACCGTAGTGGAAGCAGAAGCCGGAGCCCCCCGAGAAATCGTAACTATGAGGGGCGTTCGTATTCTGGCCGTGGTTCTGGTAGAAGGGATTTGGACAGGTCTCATGGCTCCCATGGTAGAAGGCCAAGAAGCCGTAGTCCTCGGCATAGAGGAAGGCGGAGTAGAAGTCCAATGGGAAGAGACAGGAGTCCGAATCCTATCAGAGGAGAAAGAGAAAGTAGTGTAGAAAGGAGAGCTAGAATAGAACAATGGAACAGGGAGAAGGAAGTTGGAGATTCTGGTAACAAGGACAATAAGAGTAACAATGATTATGAAGAGGCGGGCCTAAAAAATGGCAGCGAGTCTGGCAATCATCAGACATAG
Protein sequence

>MsG0780041077.01.T01

MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLNFINPTPNQPQQPQPPQPPQPESLDPDKLQEHFDDFYEDLFEELSKYGQIQSLNICDNLADHMVGNVYVQYKEEDHAANALMNLTGRFYSGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRDLRKRLFGRSSRRWNDRSGSRSRSPPRNRNYEGRSYSGRGSGRRDLDRSHGSHGRRPRSRSPRHRGRRSRSPMGRDRSPNPIRGERESSVERRARIEQWNREKEVGDSGNKDNKSNNDYEEAGLKNGSESGNHQT*