AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041339.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041339.01.T01 MTR_7g109165 89.420 293 1 1 1 263 1 293 1.23e-177 496
MsG0780041339.01.T01 MTR_1g083790 60.751 293 80 5 1 261 1 290 1.22e-112 330
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041339.01.T01 AT3G05710 60.333 300 76 5 1 261 1 296 1.09e-113 331
MsG0780041339.01.T01 AT3G05710 60.000 300 76 5 1 261 1 295 5.26e-113 329
MsG0780041339.01.T01 AT5G26980 60.274 292 80 6 1 261 1 287 6.87e-110 321
MsG0780041339.01.T01 AT5G26980 60.274 292 80 6 1 261 1 287 6.87e-110 321
MsG0780041339.01.T01 AT5G26980 60.274 292 80 6 1 261 1 287 6.87e-110 321
MsG0780041339.01.T01 AT4G02195 58.904 292 85 6 1 261 1 288 4.84e-108 317

Find 87 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGAGTAGCTCTGGATTTC+AGG 0.162720 7:+89772044 MsG0780041339.01.T01:CDS
GCCATTCAAATTCAATGATA+TGG 0.234762 7:-89775509 None:intergenic
GACTTGGAAATGAACTTTAA+AGG 0.244332 7:+89772024 MsG0780041339.01.T01:CDS
TCGCTTCTTCGTACCAATAA+TGG 0.257596 7:+89769858 MsG0780041339.01.T01:CDS
TGCCATTGAATGATCGAAAA+TGG 0.266686 7:-89769712 None:intergenic
ATTGAATTTGAATGGCAATA+GGG 0.307196 7:+89775516 MsG0780041339.01.T01:CDS
CATTGAATTTGAATGGCAAT+AGG 0.319098 7:+89775515 MsG0780041339.01.T01:CDS
GTTGGTTATCAGAAACGTTT+TGG 0.329381 7:-89769663 None:intergenic
TCATCAGCTTCTGCTTCTTC+CGG 0.338386 7:+89769804 MsG0780041339.01.T01:CDS
CTGTGGGTTTGCCGCCATCT+TGG 0.356494 7:+89770565 MsG0780041339.01.T01:CDS
TGAGGAGAGCCGTAATTTCC+CGG 0.362088 7:-89770728 None:intergenic
GCACTTCAGGTACTGGAGTT+TGG 0.364612 7:+89775454 MsG0780041339.01.T01:intron
ACTTGGAAATGAACTTTAAA+GGG 0.365677 7:+89772025 MsG0780041339.01.T01:CDS
GACTCTCACCCGGGAAATTA+CGG 0.379895 7:+89770719 MsG0780041339.01.T01:CDS
TAGGCGTAAAGGCTCTGTTT+TGG 0.380292 7:-89769603 None:intergenic
AGTATAAGAAGATCCATTAT+TGG 0.385212 7:-89769871 None:intergenic
TTGAATGATCGAAAATGGTT+TGG 0.385711 7:-89769707 None:intergenic
AACTTTAAAGGGAGTAGCTC+TGG 0.404219 7:+89772036 MsG0780041339.01.T01:CDS
TGTGGGTTTGCCGCCATCTT+GGG 0.405318 7:+89770566 MsG0780041339.01.T01:CDS
GCCATATCATTGAATTTGAA+TGG 0.413175 7:+89775508 MsG0780041339.01.T01:CDS
ACTAGATTCAGCAAATGAAA+TGG 0.430232 7:+89769478 MsG0780041339.01.T01:five_prime_UTR
AAGGCTTTGATGCCTTCGTT+TGG 0.439775 7:+89770666 MsG0780041339.01.T01:CDS
CTGGAGTTTGGTTTCTCAAA+GGG 0.445306 7:+89775466 MsG0780041339.01.T01:CDS
GCTTCTGCTTCTTCCGGTGG+CGG 0.453901 7:+89769810 MsG0780041339.01.T01:CDS
TTGAATTTGAATGGCAATAG+GGG 0.455166 7:+89775517 MsG0780041339.01.T01:CDS
TTGGGTTTAGGAATCGTGGA+AGG 0.465698 7:-89769584 None:intergenic
ATCCTGGTCCTTCTTCCTCA+AGG 0.467255 7:+89769910 MsG0780041339.01.T01:CDS
AGGAAGAAGGACCAGGATCA+TGG 0.468864 7:-89769905 None:intergenic
AAACAGAGCCTTTACGCCTA+TGG 0.471819 7:+89769606 MsG0780041339.01.T01:five_prime_UTR
TCATGATCTGAGCAAGTTCG+TGG 0.476704 7:-89774838 None:intergenic
GGGCTTGAAGCAGTTGCAAA+AGG 0.478677 7:+89775061 MsG0780041339.01.T01:CDS
TGGCGGTCCTGTCATTGAAA+TGG 0.483715 7:+89769827 MsG0780041339.01.T01:CDS
AAGAGAGAGAGAAATTGATC+AGG 0.485796 7:+89774722 MsG0780041339.01.T01:CDS
CCTCTCAGTACCCATGATCC+TGG 0.489095 7:+89769894 MsG0780041339.01.T01:CDS
TTCTTGAGTAAGAGAAGAGA+AGG 0.490764 7:+89769532 MsG0780041339.01.T01:five_prime_UTR
TTCGATTTCTGAAAGTGGGT+TGG 0.498710 7:-89769681 None:intergenic
ACTCAAGAAGTAAGACTATC+GGG 0.504279 7:-89769518 None:intergenic
GTTCTTCGATTTCTGAAAGT+GGG 0.504910 7:-89769685 None:intergenic
AAAAGACTTTCTGCTGGTAG+AGG 0.510516 7:+89770771 MsG0780041339.01.T01:CDS
GGTTCTTCGATTTCTGAAAG+TGG 0.511744 7:-89769686 None:intergenic
TACTCAAGAAGTAAGACTAT+CGG 0.512624 7:-89769519 None:intergenic
TTCAATGACAGGACCGCCAC+CGG 0.517791 7:-89769823 None:intergenic
CAACTACACCATAGGCGTAA+AGG 0.528827 7:-89769614 None:intergenic
GGGTTACGACGGGATTGACT+TGG 0.532815 7:+89772008 MsG0780041339.01.T01:intron
GGATGATGAATTCGAGGATG+TGG 0.532967 7:+89772065 MsG0780041339.01.T01:CDS
GCCTCACTTCAGACTTTCTG+AGG 0.533426 7:-89770746 None:intergenic
GAGAAGAGAAGGGATGGACG+AGG 0.535585 7:+89769543 MsG0780041339.01.T01:five_prime_UTR
GTGTTGACCATTTCAATGAC+AGG 0.536769 7:-89769834 None:intergenic
ATTTCAGGATGATGAATTCG+AGG 0.547714 7:+89772059 MsG0780041339.01.T01:CDS
TGACTTTAAATCAACTGTGC+TGG 0.547784 7:+89769450 MsG0780041339.01.T01:five_prime_UTR
CTCCGTTCTTGTGATAGACC+AGG 0.548016 7:+89774868 MsG0780041339.01.T01:CDS
ACTGGAGTTTGGTTTCTCAA+AGG 0.549521 7:+89775465 MsG0780041339.01.T01:CDS
GTTAGTGATGCATTTACTGT+GGG 0.549736 7:+89770549 MsG0780041339.01.T01:intron
TTGATGCCTTCGTTTGGCGA+TGG 0.550051 7:+89770672 MsG0780041339.01.T01:CDS
TCAGAATCATCCACCCAAGA+TGG 0.551235 7:-89770579 None:intergenic
GCAGAAGCTGATGAAGAAAG+AGG 0.551729 7:-89769795 None:intergenic
GAGGAGAGCCGTAATTTCCC+GGG 0.553232 7:-89770727 None:intergenic
AACCTTGAGGAAGAAGGACC+AGG 0.557681 7:-89769912 None:intergenic
TCAGCTTCTGCTTCTTCCGG+TGG 0.558088 7:+89769807 MsG0780041339.01.T01:CDS
TGGGTTTAGGAATCGTGGAA+GGG 0.566834 7:-89769583 None:intergenic
TACAAATATACAAAGTGCAA+AGG 0.568054 7:+89770611 MsG0780041339.01.T01:CDS
TGCTGGTAGAGGGTCTTCTG+AGG 0.575607 7:+89770782 MsG0780041339.01.T01:CDS
GGAAGAAGGACCAGGATCAT+GGG 0.578724 7:-89769904 None:intergenic
GAGTAAGAGAAGAGAAGGGA+TGG 0.581581 7:+89769537 MsG0780041339.01.T01:five_prime_UTR
TGTTGCTACAACCGTTGAGG+AGG 0.587903 7:+89775040 MsG0780041339.01.T01:CDS
GCTTCTGCAGGGAACAATTG+TGG 0.589980 7:+89774992 MsG0780041339.01.T01:intron
TAATTACACAGGGTTACGAC+GGG 0.590857 7:+89771998 MsG0780041339.01.T01:intron
GATGAATTCAACTACACCAT+AGG 0.592220 7:-89769622 None:intergenic
AAAGACTTTCTGCTGGTAGA+GGG 0.592936 7:+89770772 MsG0780041339.01.T01:CDS
TCTTGAGTAAGAGAAGAGAA+GGG 0.594118 7:+89769533 MsG0780041339.01.T01:five_prime_UTR
CTGCTTCAAGCCCTCCTCAA+CGG 0.595541 7:-89775051 None:intergenic
AAGACTATCGGGTCAAATGA+CGG 0.596336 7:-89769507 None:intergenic
TGTTAGTGATGCATTTACTG+TGG 0.601929 7:+89770548 MsG0780041339.01.T01:intron
CGAACTTGCTCAGATCATGA+AGG 0.607795 7:+89774841 MsG0780041339.01.T01:CDS
GGGTTTGCCGCCATCTTGGG+TGG 0.607966 7:+89770569 MsG0780041339.01.T01:CDS
GTTGCTACAACCGTTGAGGA+GGG 0.622795 7:+89775041 MsG0780041339.01.T01:CDS
TGAATTTGAATGGCAATAGG+GGG 0.627619 7:+89775518 MsG0780041339.01.T01:CDS
GAGTGTTGCTACAACCGTTG+AGG 0.632398 7:+89775037 MsG0780041339.01.T01:CDS
TACCTGGTCTATCACAAGAA+CGG 0.636790 7:-89774870 None:intergenic
GTAATTACACAGGGTTACGA+CGG 0.638292 7:+89771997 MsG0780041339.01.T01:intron
GTCAGATTGAGACTCTCACC+CGG 0.642837 7:+89770709 MsG0780041339.01.T01:CDS
GTTAACAAAAGCTCATGCAA+AGG 0.649437 7:+89770647 MsG0780041339.01.T01:CDS
TCTTTACCATCGCCAAACGA+AGG 0.659022 7:-89770678 None:intergenic
GAATCATCCACCCAAGATGG+CGG 0.660501 7:-89770576 None:intergenic
TCAGATTGAGACTCTCACCC+GGG 0.661197 7:+89770710 MsG0780041339.01.T01:CDS
TCCTCAGAAAGTCTGAAGTG+AGG 0.677931 7:+89770745 MsG0780041339.01.T01:CDS
CCAGGATCATGGGTACTGAG+AGG 0.696116 7:-89769894 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAAAAAAAAAAAA+AGG - Chr7:89775165-89775184 None:intergenic 0.0%
!! AAGAAAAAAAGATAAAAAAA+CGG - Chr7:89771656-89771675 None:intergenic 10.0%
!! TTCAAATTAATATTTATTTC+TGG + Chr7:89773128-89773147 MsG0780041339.01.T01:intron 10.0%
!!! TATTATTCTTTTTTTTCTTT+TGG + Chr7:89771860-89771879 MsG0780041339.01.T01:intron 10.0%
!!! TCAAATTAATATTTATTTCT+GGG + Chr7:89773129-89773148 MsG0780041339.01.T01:intron 10.0%
!!! TTTTAATATAAAAGGAAAAA+TGG + Chr7:89774444-89774463 MsG0780041339.01.T01:intron 10.0%
!!! TTTTTTTATCTTTTTTTCTT+TGG + Chr7:89771656-89771675 MsG0780041339.01.T01:intron 10.0%
!!! ACTCTGATTAATATTTATTT+TGG + Chr7:89770949-89770968 MsG0780041339.01.T01:intron 15.0%
!!! ATTCATCATTTATTTTAGAA+AGG + Chr7:89773770-89773789 MsG0780041339.01.T01:intron 15.0%
!!! CTTTTTTTTTTTTTTTTGAG+AGG + Chr7:89773555-89773574 MsG0780041339.01.T01:intron 15.0%
!!! TATGTCTGATTTTAAAATAA+CGG + Chr7:89773164-89773183 MsG0780041339.01.T01:intron 15.0%
!!! TATTAAAACATTTTACTTAC+AGG + Chr7:89775217-89775236 MsG0780041339.01.T01:intron 15.0%
!!! TATTTATTTTTTTGGCAAAA+TGG + Chr7:89774930-89774949 MsG0780041339.01.T01:intron 15.0%
!! AAAAGGAATAGTAAAAATGT+AGG - Chr7:89771594-89771613 None:intergenic 20.0%
!! AAATGGTTTATTCGTAAATT+TGG + Chr7:89771283-89771302 MsG0780041339.01.T01:intron 20.0%
!! AACTTTGTTAACAATTCAAA+AGG + Chr7:89770396-89770415 MsG0780041339.01.T01:intron 20.0%
!! ACACAATATAAAATACAAAC+AGG - Chr7:89771956-89771975 None:intergenic 20.0%
!! AGAATAATACATGAAAAACA+AGG - Chr7:89771183-89771202 None:intergenic 20.0%
!! ATTGAAAAATAAGCATAGAA+AGG - Chr7:89769948-89769967 None:intergenic 20.0%
!! ATTTAATTGTATACATACAC+CGG + Chr7:89771679-89771698 MsG0780041339.01.T01:intron 20.0%
!!! AAAGTTTAGTTTTTGATTTG+TGG + Chr7:89770066-89770085 MsG0780041339.01.T01:intron 20.0%
!!! AAGTTTAGTTTTTGATTTGT+GGG + Chr7:89770067-89770086 MsG0780041339.01.T01:intron 20.0%
!!! AATCGTAAAATACTGTATTT+TGG + Chr7:89770523-89770542 MsG0780041339.01.T01:intron 20.0%
!!! ACATTATTAACCACAATTTT+AGG - Chr7:89770299-89770318 None:intergenic 20.0%
!!! AGTACAATATTTTGATTGTA+GGG + Chr7:89772723-89772742 MsG0780041339.01.T01:intron 20.0%
!!! ATGATATTTTGATTGATTTC+AGG + Chr7:89774644-89774663 MsG0780041339.01.T01:intron 20.0%
!!! GCAAAATGGATTTATTATTA+TGG + Chr7:89774944-89774963 MsG0780041339.01.T01:intron 20.0%
!!! GTAAAAAAGTTTTATATTGC+CGG - Chr7:89771701-89771720 None:intergenic 20.0%
!!! GTTTTATAATAAAAAGGGTA+CGG - Chr7:89774900-89774919 None:intergenic 20.0%
!!! TAGTACAATATTTTGATTGT+AGG + Chr7:89772722-89772741 MsG0780041339.01.T01:intron 20.0%
!!! TGATATTTTGATTGATTTCA+GGG + Chr7:89774645-89774664 MsG0780041339.01.T01:intron 20.0%
!!! TTTTAGACTTGAATTTGAAT+CGG + Chr7:89769409-89769428 MsG0780041339.01.T01:five_prime_UTR 20.0%
! AAAACAGATAGATACATTTC+AGG + Chr7:89770976-89770995 MsG0780041339.01.T01:intron 25.0%
! AAACTTGTGCAAACAAAATT+CGG - Chr7:89770219-89770238 None:intergenic 25.0%
! AAGGATTGAAATTTAACTAC+TGG - Chr7:89770019-89770038 None:intergenic 25.0%
! AATATCATCATCTCTTTCTT+AGG - Chr7:89774632-89774651 None:intergenic 25.0%
! AATTGAGCATATGGTAATAT+CGG - Chr7:89773603-89773622 None:intergenic 25.0%
! ACAGAAGTAGTAATTTAAGA+AGG - Chr7:89775102-89775121 None:intergenic 25.0%
! ACTTGGAAATGAACTTTAAA+GGG + Chr7:89772025-89772044 MsG0780041339.01.T01:CDS 25.0%
! AGGATTGAAATTTAACTACT+GGG - Chr7:89770018-89770037 None:intergenic 25.0%
! AGTATAAGAAGATCCATTAT+TGG - Chr7:89769874-89769893 None:intergenic 25.0%
! ATAATACATGAAAAACAAGG+AGG - Chr7:89771180-89771199 None:intergenic 25.0%
! ATCAAAAGTTACTTGTTTAG+GGG - Chr7:89772943-89772962 None:intergenic 25.0%
! ATTGAATTTGAATGGCAATA+GGG + Chr7:89775516-89775535 MsG0780041339.01.T01:CDS 25.0%
! ATTTCTGTTTACAAACTTGT+TGG + Chr7:89770458-89770477 MsG0780041339.01.T01:intron 25.0%
! CAAAATGAAAATTGAGCATA+TGG - Chr7:89773612-89773631 None:intergenic 25.0%
! CAATTGAACTTAATTAACCA+CGG - Chr7:89770328-89770347 None:intergenic 25.0%
! CATCAAAAGTTACTTGTTTA+GGG - Chr7:89772944-89772963 None:intergenic 25.0%
! CTAAACTTTAACAATCACAA+AGG - Chr7:89770055-89770074 None:intergenic 25.0%
! GAAAATAGTTGAAACTTGAA+AGG + Chr7:89774027-89774046 MsG0780041339.01.T01:intron 25.0%
! TAATGCAGGTAAAATTAATG+TGG - Chr7:89775350-89775369 None:intergenic 25.0%
! TACAAATATACAAAGTGCAA+AGG + Chr7:89770611-89770630 MsG0780041339.01.T01:CDS 25.0%
! TACTAATAGATAAAAAGCGA+GGG - Chr7:89773817-89773836 None:intergenic 25.0%
! TATACAGAATGAAACTTGAA+AGG + Chr7:89774184-89774203 MsG0780041339.01.T01:intron 25.0%
! TCATCAAAAGTTACTTGTTT+AGG - Chr7:89772945-89772964 None:intergenic 25.0%
! TCCAAGAAAAGAAAAGAAAA+AGG + Chr7:89774378-89774397 MsG0780041339.01.T01:intron 25.0%
! TCGTGAACAAATAAAGAAAA+AGG - Chr7:89771611-89771630 None:intergenic 25.0%
! TCTAATTGCAAAAATTGTGT+GGG + Chr7:89773057-89773076 MsG0780041339.01.T01:intron 25.0%
! TTAAGTCAACTATGAATAAC+TGG + Chr7:89771087-89771106 MsG0780041339.01.T01:intron 25.0%
! TTCAATTCCATACATTATAG+CGG + Chr7:89769962-89769981 MsG0780041339.01.T01:intron 25.0%
! TTGAAAAACACCTAAAATTG+TGG + Chr7:89770286-89770305 MsG0780041339.01.T01:intron 25.0%
!! ACCTTTTTCTTTTCTTTTCT+TGG - Chr7:89774382-89774401 None:intergenic 25.0%
!! TAAACTTTTATCCTCACAAA+GGG - Chr7:89770106-89770125 None:intergenic 25.0%
!! TTTCTGTTTACAAACTTGTT+GGG + Chr7:89770459-89770478 MsG0780041339.01.T01:intron 25.0%
!! TTTTGAACACTTGAAAATCA+AGG - Chr7:89770254-89770273 None:intergenic 25.0%
!!! AATTGGATTTTGTTTGAAGA+CGG + Chr7:89775422-89775441 MsG0780041339.01.T01:intron 25.0%
!!! GTACAATATTTTGATTGTAG+GGG + Chr7:89772724-89772743 MsG0780041339.01.T01:intron 25.0%
!!! TTTTAGTTGAACATCAATCT+AGG - Chr7:89770439-89770458 None:intergenic 25.0%
AAAAAGAGAAATGAGATTGC+AGG - Chr7:89773921-89773940 None:intergenic 30.0%
AAAGAACACAGAAAAAAGGA+GGG + Chr7:89775243-89775262 MsG0780041339.01.T01:intron 30.0%
AAAGTTCAATGAGTGGTAAA+CGG - Chr7:89770382-89770401 None:intergenic 30.0%
AAATTGATCAGGTACTTTGA+AGG + Chr7:89774733-89774752 MsG0780041339.01.T01:intron 30.0%
AATGAAAATCTGAACAACGA+AGG - Chr7:89774272-89774291 None:intergenic 30.0%
ACAAAGCAAGTAAAAACTCA+TGG - Chr7:89773430-89773449 None:intergenic 30.0%
ACTAGATTCAGCAAATGAAA+TGG + Chr7:89769478-89769497 MsG0780041339.01.T01:five_prime_UTR 30.0%
AGAATCAGCAATTGAAAAAC+CGG - Chr7:89771558-89771577 None:intergenic 30.0%
AGGAATAGTAAAAATGTAGG+AGG - Chr7:89771591-89771610 None:intergenic 30.0%
ATATTTGGGTGTAATTACAC+AGG + Chr7:89771987-89772006 MsG0780041339.01.T01:intron 30.0%
ATGGTGAAATTCCATGATTT+CGG + Chr7:89772994-89773013 MsG0780041339.01.T01:intron 30.0%
CATTGAATTTGAATGGCAAT+AGG + Chr7:89775515-89775534 MsG0780041339.01.T01:CDS 30.0%
CTACTAATAGATAAAAAGCG+AGG - Chr7:89773818-89773837 None:intergenic 30.0%
CTCTAATTGCAAAAATTGTG+TGG + Chr7:89773056-89773075 MsG0780041339.01.T01:intron 30.0%
CTTGGAATAGAAAAATCAAG+AGG - Chr7:89774364-89774383 None:intergenic 30.0%
GAAGTTAAGAAGAGAGAAAT+AGG - Chr7:89772879-89772898 None:intergenic 30.0%
GACTTGGAAATGAACTTTAA+AGG + Chr7:89772024-89772043 MsG0780041339.01.T01:CDS 30.0%
GACTTTATAGTTCTTAAGGA+AGG + Chr7:89770917-89770936 MsG0780041339.01.T01:intron 30.0%
GAGAAATAATTATCCTACGA+GGG - Chr7:89774250-89774269 None:intergenic 30.0%
GATTATACAGTTTGTGTGAA+AGG + Chr7:89774219-89774238 MsG0780041339.01.T01:intron 30.0%
GCCATATCATTGAATTTGAA+TGG + Chr7:89775508-89775527 MsG0780041339.01.T01:CDS 30.0%
GCCATTCAAATTCAATGATA+TGG - Chr7:89775512-89775531 None:intergenic 30.0%
GGACTATAATTCTTCCTTTA+GGG - Chr7:89772920-89772939 None:intergenic 30.0%
GTCTTCAAACAAAATCCAAT+TGG - Chr7:89775423-89775442 None:intergenic 30.0%
GTTAATAATGTTCAAATCCG+TGG + Chr7:89770308-89770327 MsG0780041339.01.T01:intron 30.0%
TAATGTCAGAAAAAATGTGC+AGG + Chr7:89770809-89770828 MsG0780041339.01.T01:CDS 30.0%
TACTCAAGAAGTAAGACTAT+CGG - Chr7:89769522-89769541 None:intergenic 30.0%
TATTTGGGTGTAATTACACA+GGG + Chr7:89771988-89772007 MsG0780041339.01.T01:intron 30.0%
TCAAAAGTTACTTGTTTAGG+GGG - Chr7:89772942-89772961 None:intergenic 30.0%
TCAATAGCTTATATGCATTC+AGG - Chr7:89771054-89771073 None:intergenic 30.0%
TCACTCCATTTAGATATTTG+TGG + Chr7:89771738-89771757 MsG0780041339.01.T01:intron 30.0%
TCTAAATGGAGTGATTTGAT+TGG - Chr7:89771732-89771751 None:intergenic 30.0%
TCTGTATAATTATCCCACTT+GGG - Chr7:89774172-89774191 None:intergenic 30.0%
TGAATGCATATAAGCTATTG+AGG + Chr7:89771053-89771072 MsG0780041339.01.T01:intron 30.0%
TGTTAACAAAGTTCAATGAG+TGG - Chr7:89770389-89770408 None:intergenic 30.0%
TGTTAATGTTTCCACTTAAG+TGG + Chr7:89770141-89770160 MsG0780041339.01.T01:intron 30.0%
TGTTTGAAGACGGTTATAAT+CGG + Chr7:89775432-89775451 MsG0780041339.01.T01:intron 30.0%
TTCTGTATAATTATCCCACT+TGG - Chr7:89774173-89774192 None:intergenic 30.0%
TTGAATGATCGAAAATGGTT+TGG - Chr7:89769710-89769729 None:intergenic 30.0%
TTGAATTTGAATGGCAATAG+GGG + Chr7:89775517-89775536 MsG0780041339.01.T01:CDS 30.0%
TTGTGCGAAGAGTTAAAAAA+TGG - Chr7:89772294-89772313 None:intergenic 30.0%
! AACCATTTTCGATCATTCAA+TGG + Chr7:89769710-89769729 MsG0780041339.01.T01:exon 30.0%
! CACACAATTTTTGCAATTAG+AGG - Chr7:89773058-89773077 None:intergenic 30.0%
! CTAAACTTTTATCCTCACAA+AGG - Chr7:89770107-89770126 None:intergenic 30.0%
! GAGGTTTTCAGAAACAATAA+AGG + Chr7:89773661-89773680 MsG0780041339.01.T01:intron 30.0%
! GGTTAATGAAGTGTTAGATT+TGG + Chr7:89770162-89770181 MsG0780041339.01.T01:intron 30.0%
! GGTTGACTTTATAGTTCTTA+AGG + Chr7:89770913-89770932 MsG0780041339.01.T01:intron 30.0%
! GTCTTTTATGATGCAATGAA+AGG - Chr7:89772369-89772388 None:intergenic 30.0%
! TACAAATTTTCATGTCTAGC+CGG + Chr7:89771536-89771555 MsG0780041339.01.T01:intron 30.0%
! TACTTCTGTAAGATTTTGCT+CGG + Chr7:89775113-89775132 MsG0780041339.01.T01:intron 30.0%
! TCTACTGTTCACTTTGAAAA+TGG + Chr7:89771266-89771285 MsG0780041339.01.T01:intron 30.0%
! TTTCAATCCTTTTATCCCTA+TGG + Chr7:89770028-89770047 MsG0780041339.01.T01:intron 30.0%
!! AGTAGATTTGCTGTATTGTT+TGG - Chr7:89772816-89772835 None:intergenic 30.0%
!! ATTTTAGAAAGGAAGACACA+AGG + Chr7:89773781-89773800 MsG0780041339.01.T01:intron 30.0%
!! CTATGAATAACTGGTGTTAT+TGG + Chr7:89771096-89771115 MsG0780041339.01.T01:intron 30.0%
!! GTTTTTACTTGCTTTGTTGT+AGG + Chr7:89773433-89773452 MsG0780041339.01.T01:intron 30.0%
!!! AATTTTTTCTTGCTTTGCTG+TGG + Chr7:89773303-89773322 MsG0780041339.01.T01:intron 30.0%
!!! ATTTTTTCTTGCTTTGCTGT+GGG + Chr7:89773304-89773323 MsG0780041339.01.T01:intron 30.0%
!!! CTGCTATTTTTTATCAGTTG+AGG + Chr7:89770892-89770911 MsG0780041339.01.T01:intron 30.0%
!!! TATCAGAAACGTTTTGGAAA+TGG - Chr7:89769660-89769679 None:intergenic 30.0%
AACAATCACAAAGGTCCATA+GGG - Chr7:89770046-89770065 None:intergenic 35.0%
AAGAAAAACCTTGAGGAAGA+AGG - Chr7:89769921-89769940 None:intergenic 35.0%
AAGAGAGAGAGAAATTGATC+AGG + Chr7:89774722-89774741 MsG0780041339.01.T01:CDS 35.0%
AAGGAAATGGTCAACAGATA+GGG + Chr7:89774004-89774023 MsG0780041339.01.T01:intron 35.0%
AAGTTCAATGAGTGGTAAAC+GGG - Chr7:89770381-89770400 None:intergenic 35.0%
ACAATCACCGCTATAATGTA+TGG - Chr7:89769972-89769991 None:intergenic 35.0%
ACTCAAGAAGTAAGACTATC+GGG - Chr7:89769521-89769540 None:intergenic 35.0%
ACTGTTCATGAACAAGGAAA+TGG + Chr7:89773991-89774010 MsG0780041339.01.T01:intron 35.0%
AGATGAGGATTTCTCTTGTT+TGG + Chr7:89772222-89772241 MsG0780041339.01.T01:intron 35.0%
AGGAGAAAAGAAAAACCTTG+AGG - Chr7:89769928-89769947 None:intergenic 35.0%
AGTAAAAACTCATGGATAGG+AGG - Chr7:89773422-89773441 None:intergenic 35.0%
AGTGTAATTAAGCCTGTGTT+TGG + Chr7:89772149-89772168 MsG0780041339.01.T01:intron 35.0%
AGTGTGCTGAAAACAAGAAA+AGG - Chr7:89774480-89774499 None:intergenic 35.0%
AGTTAGATGGTATGTAATGC+AGG - Chr7:89775364-89775383 None:intergenic 35.0%
ATGGGAGAAAAAGTTGTGAA+AGG + Chr7:89772435-89772454 MsG0780041339.01.T01:intron 35.0%
ATTTCAGGATGATGAATTCG+AGG + Chr7:89772059-89772078 MsG0780041339.01.T01:CDS 35.0%
CAAAAGTTACTTGTTTAGGG+GGG - Chr7:89772941-89772960 None:intergenic 35.0%
CACTTCATTAACCACTTAAG+TGG - Chr7:89770155-89770174 None:intergenic 35.0%
CAGCAAAATTCAGATGAAGT+AGG - Chr7:89771220-89771239 None:intergenic 35.0%
CAGGAATTAACCTAAGAAAG+TGG + Chr7:89771769-89771788 MsG0780041339.01.T01:intron 35.0%
CATCGCCACAAATATCTAAA+TGG - Chr7:89771746-89771765 None:intergenic 35.0%
CGAAGAGTTAAAAAATGGTG+GGG - Chr7:89772289-89772308 None:intergenic 35.0%
CGAGTCTATTTGAATCCAAT+TGG + Chr7:89775405-89775424 MsG0780041339.01.T01:intron 35.0%
CTTTCTACTGTTCATGAACA+AGG + Chr7:89773985-89774004 MsG0780041339.01.T01:intron 35.0%
GAAAGAACACAGAAAAAAGG+AGG + Chr7:89775242-89775261 MsG0780041339.01.T01:intron 35.0%
GAATCAAACTTGAGACTTTG+AGG + Chr7:89774104-89774123 MsG0780041339.01.T01:intron 35.0%
GACAGTGTGAAATTTACTGT+AGG + Chr7:89774802-89774821 MsG0780041339.01.T01:intron 35.0%
GATGAATTCAACTACACCAT+AGG - Chr7:89769625-89769644 None:intergenic 35.0%
GCAAGTAAAAACTCATGGAT+AGG - Chr7:89773425-89773444 None:intergenic 35.0%
GCAGAAAGAACACAGAAAAA+AGG + Chr7:89775239-89775258 MsG0780041339.01.T01:intron 35.0%
GCGAAGAGTTAAAAAATGGT+GGG - Chr7:89772290-89772309 None:intergenic 35.0%
GGAGAAATAATTATCCTACG+AGG - Chr7:89774251-89774270 None:intergenic 35.0%
GGGACTATAATTCTTCCTTT+AGG - Chr7:89772921-89772940 None:intergenic 35.0%
GTGTGCTGAAAACAAGAAAA+GGG - Chr7:89774479-89774498 None:intergenic 35.0%
GTTAACAAAAGCTCATGCAA+AGG + Chr7:89770647-89770666 MsG0780041339.01.T01:CDS 35.0%
GTTAGTGATGCATTTACTGT+GGG + Chr7:89770549-89770568 MsG0780041339.01.T01:intron 35.0%
TAAAAAGCGAGGGAAAGATA+AGG - Chr7:89773807-89773826 None:intergenic 35.0%
TAACAATCACAAAGGTCCAT+AGG - Chr7:89770047-89770066 None:intergenic 35.0%
TATAATTATCCCACTTGGGT+TGG - Chr7:89774168-89774187 None:intergenic 35.0%
TCAAGTTTGAACCGAAATCA+TGG - Chr7:89773008-89773027 None:intergenic 35.0%
TCATCACTTATCTCACATCA+TGG + Chr7:89774532-89774551 MsG0780041339.01.T01:intron 35.0%
TCTTGAGTAAGAGAAGAGAA+GGG + Chr7:89769533-89769552 MsG0780041339.01.T01:five_prime_UTR 35.0%
TGAATTTGAATGGCAATAGG+GGG + Chr7:89775518-89775537 MsG0780041339.01.T01:CDS 35.0%
TGACTTTAAATCAACTGTGC+TGG + Chr7:89769450-89769469 MsG0780041339.01.T01:five_prime_UTR 35.0%
TGCAATTAGAGGATTGTAAG+AGG - Chr7:89773047-89773066 None:intergenic 35.0%
TGCCATTGAATGATCGAAAA+TGG - Chr7:89769715-89769734 None:intergenic 35.0%
TGCGAAGAGTTAAAAAATGG+TGG - Chr7:89772291-89772310 None:intergenic 35.0%
TGTCGCTGACATCTATATTT+GGG + Chr7:89771973-89771992 MsG0780041339.01.T01:intron 35.0%
TGTTAGTGATGCATTTACTG+TGG + Chr7:89770548-89770567 MsG0780041339.01.T01:intron 35.0%
TTAATAGGCTGACCACTTAT+GGG + Chr7:89772417-89772436 MsG0780041339.01.T01:intron 35.0%
TTCTTGAGTAAGAGAAGAGA+AGG + Chr7:89769532-89769551 MsG0780041339.01.T01:five_prime_UTR 35.0%
TTGTAACTAATCTCTCTAGC+TGG + Chr7:89772099-89772118 MsG0780041339.01.T01:intron 35.0%
TTTAATAGGCTGACCACTTA+TGG + Chr7:89772416-89772435 MsG0780041339.01.T01:intron 35.0%
TTTGGTTGTGGTGAGAAAAA+GGG + Chr7:89772240-89772259 MsG0780041339.01.T01:intron 35.0%
! ATCGATTCAAAGACATTCAG+GGG + Chr7:89773465-89773484 MsG0780041339.01.T01:intron 35.0%
! CTTGAGTGCTTGCATATTTT+AGG + Chr7:89771337-89771356 MsG0780041339.01.T01:intron 35.0%
! GATTCCCTCAATGTCAATTT+TGG - Chr7:89774089-89774108 None:intergenic 35.0%
! GTTCTTCGATTTCTGAAAGT+GGG - Chr7:89769688-89769707 None:intergenic 35.0%
! GTTGGTTATCAGAAACGTTT+TGG - Chr7:89769666-89769685 None:intergenic 35.0%
!! ACAACTTTTTCTCCCATAAG+TGG - Chr7:89772432-89772451 None:intergenic 35.0%
!! CATCGATTCAAAGACATTCA+GGG + Chr7:89773464-89773483 MsG0780041339.01.T01:intron 35.0%
!! TCATCGATTCAAAGACATTC+AGG + Chr7:89773463-89773482 MsG0780041339.01.T01:intron 35.0%
!!! AACGTTTTGGAAATGGAAAG+TGG - Chr7:89769653-89769672 None:intergenic 35.0%
!!! GCTAGTTTTGTTGATTCTCA+AGG + Chr7:89775310-89775329 MsG0780041339.01.T01:intron 35.0%
!!! TGCAACGCTTGTGTTTTAAT+AGG + Chr7:89772402-89772421 MsG0780041339.01.T01:intron 35.0%
!!! TTTCTTGTTTTCAGCACACT+TGG + Chr7:89774480-89774499 MsG0780041339.01.T01:intron 35.0%
AAAAGACTTTCTGCTGGTAG+AGG + Chr7:89770771-89770790 MsG0780041339.01.T01:CDS 40.0%
AAACAAGGAGGAGCAAGATA+AGG - Chr7:89771168-89771187 None:intergenic 40.0%
AAAGACTTTCTGCTGGTAGA+GGG + Chr7:89770772-89770791 MsG0780041339.01.T01:CDS 40.0%
AACCAAAGGAAACAGCAACA+GGG - Chr7:89773375-89773394 None:intergenic 40.0%
AAGACTATCGGGTCAAATGA+CGG - Chr7:89769510-89769529 None:intergenic 40.0%
ACGTTTACAACAGCAACAAG+AGG + Chr7:89771512-89771531 MsG0780041339.01.T01:intron 40.0%
AGGAAATGGTCAACAGATAG+GGG + Chr7:89774005-89774024 MsG0780041339.01.T01:intron 40.0%
AGGCTAAAAAGACTTTCTGC+TGG + Chr7:89770765-89770784 MsG0780041339.01.T01:CDS 40.0%
AGGCTTAATTACACTACACG+AGG - Chr7:89772144-89772163 None:intergenic 40.0%
ATTAAGCCTGTGTTTGGTAG+AGG + Chr7:89772155-89772174 MsG0780041339.01.T01:intron 40.0%
ATTACGACTTGCCTTTGGTT+GGG - Chr7:89772976-89772995 None:intergenic 40.0%
ATTGCAGGTTTCAGCTGAAA+AGG - Chr7:89773906-89773925 None:intergenic 40.0%
CAAAGGTCCATAGGGATAAA+AGG - Chr7:89770038-89770057 None:intergenic 40.0%
CAAGGAAATGGTCAACAGAT+AGG + Chr7:89774003-89774022 MsG0780041339.01.T01:intron 40.0%
CAGTCAAAACCTGGATTGTT+CGG - Chr7:89771005-89771024 None:intergenic 40.0%
CCAAAGGTAGATACAAAAGC+CGG - Chr7:89771421-89771440 None:intergenic 40.0%
CCCACCAAAATTGACATTGA+GGG + Chr7:89774082-89774101 MsG0780041339.01.T01:intron 40.0%
CCCTTCTTTCTTTACTGTTC+CGG + Chr7:89773944-89773963 MsG0780041339.01.T01:intron 40.0%
CCGGAACAGTAAAGAAAGAA+GGG - Chr7:89773947-89773966 None:intergenic 40.0%
CCTTCTTTCTTTACTGTTCC+GGG + Chr7:89773945-89773964 MsG0780041339.01.T01:intron 40.0%
GAAATATGTCAAGTGAAGCC+CGG - Chr7:89773966-89773985 None:intergenic 40.0%
GAGAGAGAGTTTAGACATGT+AGG + Chr7:89772263-89772282 MsG0780041339.01.T01:intron 40.0%
GAGAGTTATGAGAGAAGATG+AGG + Chr7:89772207-89772226 MsG0780041339.01.T01:intron 40.0%
GCACTGTTGTGTGATTTGAT+TGG + Chr7:89771791-89771810 MsG0780041339.01.T01:intron 40.0%
GTAATTACACAGGGTTACGA+CGG + Chr7:89771997-89772016 MsG0780041339.01.T01:intron 40.0%
GTTTGGTTGTGGTGAGAAAA+AGG + Chr7:89772239-89772258 MsG0780041339.01.T01:intron 40.0%
TAACCAAAGGAAACAGCAAC+AGG - Chr7:89773376-89773395 None:intergenic 40.0%
TAATTACACAGGGTTACGAC+GGG + Chr7:89771998-89772017 MsG0780041339.01.T01:intron 40.0%
TACCTGGTCTATCACAAGAA+CGG - Chr7:89774873-89774892 None:intergenic 40.0%
TATGCAAGCACTCAAGATAG+AGG - Chr7:89771333-89771352 None:intergenic 40.0%
TCATACAAATTCCAGGACGT+CGG - Chr7:89771398-89771417 None:intergenic 40.0%
TCATGGATAGGAGGTTCTTA+AGG - Chr7:89773413-89773432 None:intergenic 40.0%
TCCTTTGGTTAGGAGGATTA+GGG + Chr7:89773385-89773404 MsG0780041339.01.T01:intron 40.0%
TCGCTTCTTCGTACCAATAA+TGG + Chr7:89769858-89769877 MsG0780041339.01.T01:CDS 40.0%
TCTTAGGATACAACTGCATC+AGG - Chr7:89774616-89774635 None:intergenic 40.0%
TGATTTCTCTTCCCAACCAA+AGG + Chr7:89772962-89772981 MsG0780041339.01.T01:intron 40.0%
TTCCAATCACAGAAACTCGA+GGG - Chr7:89771928-89771947 None:intergenic 40.0%
TTCCTTTGGTTAGGAGGATT+AGG + Chr7:89773384-89773403 MsG0780041339.01.T01:intron 40.0%
TTGGTTGTGGTGAGAAAAAG+GGG + Chr7:89772241-89772260 MsG0780041339.01.T01:intron 40.0%
! AACTTTAAAGGGAGTAGCTC+TGG + Chr7:89772036-89772055 MsG0780041339.01.T01:CDS 40.0%
! ACTGGAGTTTGGTTTCTCAA+AGG + Chr7:89775465-89775484 MsG0780041339.01.T01:CDS 40.0%
! CTGGAGTTTGGTTTCTCAAA+GGG + Chr7:89775466-89775485 MsG0780041339.01.T01:CDS 40.0%
! GAATTAGCTCTCGAGTTAGA+TGG - Chr7:89775377-89775396 None:intergenic 40.0%
! GGATTTCTCTTGTTTGGTTG+TGG + Chr7:89772228-89772247 MsG0780041339.01.T01:intron 40.0%
! GGTTCTTCGATTTCTGAAAG+TGG - Chr7:89769689-89769708 None:intergenic 40.0%
! GTGTCGCTGACATCTATATT+TGG + Chr7:89771972-89771991 MsG0780041339.01.T01:intron 40.0%
! GTGTTGACCATTTCAATGAC+AGG - Chr7:89769837-89769856 None:intergenic 40.0%
! TCAAACTTGAGACTTTGAGG+AGG + Chr7:89774107-89774126 MsG0780041339.01.T01:intron 40.0%
! TCCCTCAATGTCAATTTTGG+TGG - Chr7:89774086-89774105 None:intergenic 40.0%
! TTCGATTTCTGAAAGTGGGT+TGG - Chr7:89769684-89769703 None:intergenic 40.0%
! TTTTGACCACCATATGCAGT+TGG + Chr7:89773627-89773646 MsG0780041339.01.T01:intron 40.0%
!! CAAAAGTTGATGCTTCTGCA+GGG + Chr7:89774981-89775000 MsG0780041339.01.T01:intron 40.0%
!! CCCTCAATGTCAATTTTGGT+GGG - Chr7:89774085-89774104 None:intergenic 40.0%
!! TCAAAAGTTGATGCTTCTGC+AGG + Chr7:89774980-89774999 MsG0780041339.01.T01:intron 40.0%
!! TCAGGTACTTTGAAGGCATT+TGG + Chr7:89774740-89774759 MsG0780041339.01.T01:intron 40.0%
!! TGTTGCTGTTTCCTTTGGTT+AGG + Chr7:89773375-89773394 MsG0780041339.01.T01:intron 40.0%
!! TTCTTCCTTTAGGGTGTGTT+TGG - Chr7:89772911-89772930 None:intergenic 40.0%
!!! AAAGGCTCTGTTTTGGGTTT+AGG - Chr7:89769599-89769618 None:intergenic 40.0%
!!! TGTTTTGGGTTTAGGAATCG+TGG - Chr7:89769591-89769610 None:intergenic 40.0%
!!! TTGCTGTGGGTTTTAGATCA+CGG + Chr7:89773317-89773336 MsG0780041339.01.T01:intron 40.0%
AAAATTGTGTGGGTGTGTGC+TGG + Chr7:89773067-89773086 MsG0780041339.01.T01:intron 45.0%
AAACAGAGCCTTTACGCCTA+TGG + Chr7:89769606-89769625 MsG0780041339.01.T01:five_prime_UTR 45.0%
AAACTCGAGGGTCAGAAATG+TGG - Chr7:89771916-89771935 None:intergenic 45.0%
AAATTGTGTGGGTGTGTGCT+GGG + Chr7:89773068-89773087 MsG0780041339.01.T01:intron 45.0%
AAGCCGGTCATACAAATTCC+AGG - Chr7:89771405-89771424 None:intergenic 45.0%
ACGGTTATAATCGGCACTTC+AGG + Chr7:89775441-89775460 MsG0780041339.01.T01:intron 45.0%
ACTGCTCTTAGTCAGGACTT+AGG + Chr7:89771021-89771040 MsG0780041339.01.T01:intron 45.0%
AGACCTTCAGAACCTGTCAA+TGG + Chr7:89771458-89771477 MsG0780041339.01.T01:intron 45.0%
ATAATCGGCACTTCAGGTAC+TGG + Chr7:89775447-89775466 MsG0780041339.01.T01:intron 45.0%
CAACCAAAGGCAAGTCGTAA+TGG + Chr7:89772975-89772994 MsG0780041339.01.T01:intron 45.0%
CAACTACACCATAGGCGTAA+AGG - Chr7:89769617-89769636 None:intergenic 45.0%
CATTACGACTTGCCTTTGGT+TGG - Chr7:89772977-89772996 None:intergenic 45.0%
CCCGGAACAGTAAAGAAAGA+AGG - Chr7:89773948-89773967 None:intergenic 45.0%
CGTCCTGGAATTTGTATGAC+CGG + Chr7:89771399-89771418 MsG0780041339.01.T01:intron 45.0%
CTCAACCAAACACACCCTAA+AGG + Chr7:89772903-89772922 MsG0780041339.01.T01:intron 45.0%
GACTAAGAGCAGTCAAAACC+TGG - Chr7:89771014-89771033 None:intergenic 45.0%
GAGTAAGAGAAGAGAAGGGA+TGG + Chr7:89769537-89769556 MsG0780041339.01.T01:five_prime_UTR 45.0%
GATATTTGTGGCGATGCTTC+AGG + Chr7:89771750-89771769 MsG0780041339.01.T01:intron 45.0%
GCAGAAGCTGATGAAGAAAG+AGG - Chr7:89769798-89769817 None:intergenic 45.0%
GCCCACCAAAATTGACATTG+AGG + Chr7:89774081-89774100 MsG0780041339.01.T01:intron 45.0%
GGATGATGAATTCGAGGATG+TGG + Chr7:89772065-89772084 MsG0780041339.01.T01:CDS 45.0%
GTTCCAATCACAGAAACTCG+AGG - Chr7:89771929-89771948 None:intergenic 45.0%
TCACCATTACGACTTGCCTT+TGG - Chr7:89772981-89773000 None:intergenic 45.0%
TCAGAATCATCCACCCAAGA+TGG - Chr7:89770582-89770601 None:intergenic 45.0%
TCATCAGCTTCTGCTTCTTC+CGG + Chr7:89769804-89769823 MsG0780041339.01.T01:CDS 45.0%
TCATGATCTGAGCAAGTTCG+TGG - Chr7:89774841-89774860 None:intergenic 45.0%
TCCCTAATCCTCCTAACCAA+AGG - Chr7:89773389-89773408 None:intergenic 45.0%
TCTTCTCCTCTACCAAACAC+AGG - Chr7:89772164-89772183 None:intergenic 45.0%
TCTTTACCATCGCCAAACGA+AGG - Chr7:89770681-89770700 None:intergenic 45.0%
TGGGTTTAGGAATCGTGGAA+GGG - Chr7:89769586-89769605 None:intergenic 45.0%
TTGGGTTTAGGAATCGTGGA+AGG - Chr7:89769587-89769606 None:intergenic 45.0%
! AAGGCTTTGATGCCTTCGTT+TGG + Chr7:89770666-89770685 MsG0780041339.01.T01:CDS 45.0%
! AATATGTTGACTGCTTCCGC+CGG - Chr7:89771488-89771507 None:intergenic 45.0%
! AGGCGTAAAGGCTCTGTTTT+GGG - Chr7:89769605-89769624 None:intergenic 45.0%
! CCGGCTTTTGTATCTACCTT+TGG + Chr7:89771418-89771437 MsG0780041339.01.T01:intron 45.0%
! CGAACTTGCTCAGATCATGA+AGG + Chr7:89774841-89774860 MsG0780041339.01.T01:CDS 45.0%
! TAGGCGTAAAGGCTCTGTTT+TGG - Chr7:89769606-89769625 None:intergenic 45.0%
! TCCTCAGAAAGTCTGAAGTG+AGG + Chr7:89770745-89770764 MsG0780041339.01.T01:CDS 45.0%
! TTCAGGTTACCGAACAATCC+AGG + Chr7:89770993-89771012 MsG0780041339.01.T01:intron 45.0%
!! CACAACAGTGCCACTTTCTT+AGG - Chr7:89771782-89771801 None:intergenic 45.0%
!! TGCTGTTTCCTTTGGTTAGG+AGG + Chr7:89773378-89773397 MsG0780041339.01.T01:intron 45.0%
!! TTCCCTGTTGCTGTTTCCTT+TGG + Chr7:89773370-89773389 MsG0780041339.01.T01:intron 45.0%
!!! GGTTTTGACTGCTCTTAGTC+AGG + Chr7:89771014-89771033 MsG0780041339.01.T01:intron 45.0%
!! AAAAAAAATATAATTATATG+AGG - Chr7:89773233-89773252 None:intergenic 5.0%
!!! AATAGATTTATTTATTTTTT+TGG + Chr7:89774922-89774941 MsG0780041339.01.T01:intron 5.0%
!!! ATTTTGTTTTATAATAAAAA+GGG - Chr7:89774905-89774924 None:intergenic 5.0%
!!! CAATATATTTTTAATATAAA+AGG + Chr7:89774436-89774455 MsG0780041339.01.T01:intron 5.0%
!!! CTTTTATATTAAAAATATAT+TGG - Chr7:89774438-89774457 None:intergenic 5.0%
!!! TATTTTGTTTTATAATAAAA+AGG - Chr7:89774906-89774925 None:intergenic 5.0%
!!! TTTATTTTATTTTATGAAAT+GGG + Chr7:89772462-89772481 MsG0780041339.01.T01:intron 5.0%
!!! TTTTATTTTATTTTATGAAA+TGG + Chr7:89772461-89772480 MsG0780041339.01.T01:intron 5.0%
AACCTTGAGGAAGAAGGACC+AGG - Chr7:89769915-89769934 None:intergenic 50.0%
AAGGAGGAGCAAGATAAGGC+AGG - Chr7:89771164-89771183 None:intergenic 50.0%
AATTGTGTGGGTGTGTGCTG+GGG + Chr7:89773069-89773088 MsG0780041339.01.T01:intron 50.0%
AGAACCTGTCAATGGACCTC+CGG + Chr7:89771466-89771485 MsG0780041339.01.T01:intron 50.0%
AGGAAGAAGGACCAGGATCA+TGG - Chr7:89769908-89769927 None:intergenic 50.0%
AGGAGCAAGATAAGGCAGGA+TGG - Chr7:89771160-89771179 None:intergenic 50.0%
ATCCTGGTCCTTCTTCCTCA+AGG + Chr7:89769910-89769929 MsG0780041339.01.T01:CDS 50.0%
CGCACAACAGCGAAGAAACA+GGG + Chr7:89772307-89772326 MsG0780041339.01.T01:intron 50.0%
CTCCGTTCTTGTGATAGACC+AGG + Chr7:89774868-89774887 MsG0780041339.01.T01:CDS 50.0%
CTGGGGAATGGGATAGTCAT+AGG + Chr7:89773086-89773105 MsG0780041339.01.T01:intron 50.0%
GAATCATCCACCCAAGATGG+CGG - Chr7:89770579-89770598 None:intergenic 50.0%
GACCCTCGAGTTTCTGTGAT+TGG + Chr7:89771923-89771942 MsG0780041339.01.T01:intron 50.0%
GACTCTCACCCGGGAAATTA+CGG + Chr7:89770719-89770738 MsG0780041339.01.T01:CDS 50.0%
GCCTCACTTCAGACTTTCTG+AGG - Chr7:89770749-89770768 None:intergenic 50.0%
GCTTCTGCAGGGAACAATTG+TGG + Chr7:89774992-89775011 MsG0780041339.01.T01:intron 50.0%
GGAAGAAGGACCAGGATCAT+GGG - Chr7:89769907-89769926 None:intergenic 50.0%
GGAGCAAGATAAGGCAGGAT+GGG - Chr7:89771159-89771178 None:intergenic 50.0%
GGGCTTGAAGCAGTTGCAAA+AGG + Chr7:89775061-89775080 MsG0780041339.01.T01:CDS 50.0%
GTCAGATTGAGACTCTCACC+CGG + Chr7:89770709-89770728 MsG0780041339.01.T01:CDS 50.0%
GTGAAAGGAGAAACCCTCGT+AGG + Chr7:89774234-89774253 MsG0780041339.01.T01:intron 50.0%
GTTGCTACAACCGTTGAGGA+GGG + Chr7:89775041-89775060 MsG0780041339.01.T01:CDS 50.0%
TAGCAAGTGAACGCTGCCAA+AGG - Chr7:89771437-89771456 None:intergenic 50.0%
TATCCTCACAAAGGGCCTCA+GGG - Chr7:89770098-89770117 None:intergenic 50.0%
TCAGATTGAGACTCTCACCC+GGG + Chr7:89770710-89770729 MsG0780041339.01.T01:CDS 50.0%
TCGCACAACAGCGAAGAAAC+AGG + Chr7:89772306-89772325 MsG0780041339.01.T01:intron 50.0%
TGAGGAGAGCCGTAATTTCC+CGG - Chr7:89770731-89770750 None:intergenic 50.0%
TGGCGGTCCTGTCATTGAAA+TGG + Chr7:89769827-89769846 MsG0780041339.01.T01:CDS 50.0%
TGTCCCTCACCAACTGCATA+TGG - Chr7:89773639-89773658 None:intergenic 50.0%
TGTTGCTACAACCGTTGAGG+AGG + Chr7:89775040-89775059 MsG0780041339.01.T01:CDS 50.0%
TTATCCTCACAAAGGGCCTC+AGG - Chr7:89770099-89770118 None:intergenic 50.0%
TTGATGCCTTCGTTTGGCGA+TGG + Chr7:89770672-89770691 MsG0780041339.01.T01:CDS 50.0%
TTTGCTCGGTCTTTGCGAGT+CGG + Chr7:89775127-89775146 MsG0780041339.01.T01:intron 50.0%
! AAAAGGGTACGGCACTTACC+TGG - Chr7:89774889-89774908 None:intergenic 50.0%
! ACCACCATATGCAGTTGGTG+AGG + Chr7:89773632-89773651 MsG0780041339.01.T01:intron 50.0%
! GAGTGTTGCTACAACCGTTG+AGG + Chr7:89775037-89775056 MsG0780041339.01.T01:CDS 50.0%
! GGTCCATTGACAGGTTCTGA+AGG - Chr7:89771464-89771483 None:intergenic 50.0%
! GTGTTGTTAGCTTGGGACCT+TGG - Chr7:89774141-89774160 None:intergenic 50.0%
!! AAGGCAGGATGGGCTATTGA+AGG - Chr7:89771149-89771168 None:intergenic 50.0%
!! AGGATGGGCTATTGAAGGGT+GGG - Chr7:89771144-89771163 None:intergenic 50.0%
!! AGGCAGGATGGGCTATTGAA+GGG - Chr7:89771148-89771167 None:intergenic 50.0%
!! AGGGAGTAGCTCTGGATTTC+AGG + Chr7:89772044-89772063 MsG0780041339.01.T01:CDS 50.0%
!! CCACCATATGCAGTTGGTGA+GGG + Chr7:89773633-89773652 MsG0780041339.01.T01:intron 50.0%
!! GCACTTCAGGTACTGGAGTT+TGG + Chr7:89775454-89775473 MsG0780041339.01.T01:intron 50.0%
!! TGGCCTGGTGTTGTTAGCTT+GGG - Chr7:89774148-89774167 None:intergenic 50.0%
!! TTGGCCTGGTGTTGTTAGCT+TGG - Chr7:89774149-89774168 None:intergenic 50.0%
AACACCAGGCCAACCCAAGT+GGG + Chr7:89774156-89774175 MsG0780041339.01.T01:intron 55.0%
CCCTCACCAACTGCATATGG+TGG - Chr7:89773636-89773655 None:intergenic 55.0%
CCTCTCAGTACCCATGATCC+TGG + Chr7:89769894-89769913 MsG0780041339.01.T01:CDS 55.0%
CTGCTTCAAGCCCTCCTCAA+CGG - Chr7:89775054-89775073 None:intergenic 55.0%
GAGAAGAGAAGGGATGGACG+AGG + Chr7:89769543-89769562 MsG0780041339.01.T01:five_prime_UTR 55.0%
GAGGAGAGCCGTAATTTCCC+GGG - Chr7:89770730-89770749 None:intergenic 55.0%
GATTTGTGGGCAGTTCCCTG+AGG + Chr7:89770080-89770099 MsG0780041339.01.T01:intron 55.0%
GGGTTACGACGGGATTGACT+TGG + Chr7:89772008-89772027 MsG0780041339.01.T01:intron 55.0%
GGTCCCAAGCTAACAACACC+AGG + Chr7:89774142-89774161 MsG0780041339.01.T01:intron 55.0%
TCAGCTTCTGCTTCTTCCGG+TGG + Chr7:89769807-89769826 MsG0780041339.01.T01:CDS 55.0%
TGCTGGTAGAGGGTCTTCTG+AGG + Chr7:89770782-89770801 MsG0780041339.01.T01:CDS 55.0%
TGTGGGTTTGCCGCCATCTT+GGG + Chr7:89770566-89770585 MsG0780041339.01.T01:CDS 55.0%
TTCAATGACAGGACCGCCAC+CGG - Chr7:89769826-89769845 None:intergenic 55.0%
TTTGTACGAGTCCGACGTCC+TGG + Chr7:89771384-89771403 MsG0780041339.01.T01:intron 55.0%
! TTGAGGAGGAGCACACTCCA+AGG + Chr7:89774121-89774140 MsG0780041339.01.T01:intron 55.0%
!! CAGGATGGGCTATTGAAGGG+TGG - Chr7:89771145-89771164 None:intergenic 55.0%
!! CCAGGATCATGGGTACTGAG+AGG - Chr7:89769897-89769916 None:intergenic 55.0%
!! GCAGTTGGTGAGGGACAATG+AGG + Chr7:89773642-89773661 MsG0780041339.01.T01:intron 55.0%
!! GGATGGGCTATTGAAGGGTG+GGG - Chr7:89771143-89771162 None:intergenic 55.0%
!! TTATCCCACTTGGGTTGGCC+TGG - Chr7:89774163-89774182 None:intergenic 55.0%
ACCTGTCAATGGACCTCCGG+CGG + Chr7:89771469-89771488 MsG0780041339.01.T01:intron 60.0%
CAACACCAGGCCAACCCAAG+TGG + Chr7:89774155-89774174 MsG0780041339.01.T01:intron 60.0%
CTGTGGGTTTGCCGCCATCT+TGG + Chr7:89770565-89770584 MsG0780041339.01.T01:CDS 60.0%
GCTTCTGCTTCTTCCGGTGG+CGG + Chr7:89769810-89769829 MsG0780041339.01.T01:CDS 60.0%
GGCTATTGAAGGGTGGGGAG+AGG - Chr7:89771138-89771157 None:intergenic 60.0%
GTGGGTGTGTGCTGGGGAAT+GGG + Chr7:89773075-89773094 MsG0780041339.01.T01:intron 60.0%
GTTCCCTGAGGCCCTTTGTG+AGG + Chr7:89770092-89770111 MsG0780041339.01.T01:intron 60.0%
TGTGGGTGTGTGCTGGGGAA+TGG + Chr7:89773074-89773093 MsG0780041339.01.T01:intron 60.0%
! ATGTTGACTGCTTCCGCCGG+AGG - Chr7:89771485-89771504 None:intergenic 60.0%
GGGTTTGCCGCCATCTTGGG+TGG + Chr7:89770569-89770588 MsG0780041339.01.T01:CDS 65.0%
TCCGCCGGAGGTCCATTGAC+AGG - Chr7:89771473-89771492 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 89769370 89775558 89769370 ID=MsG0780041339.01;Name=MsG0780041339.01
Chr7 mRNA 89769370 89775558 89769370 ID=MsG0780041339.01.T01;Parent=MsG0780041339.01;Name=MsG0780041339.01.T01;_AED=0.45;_eAED=0.49;_QI=359|0.66|0.85|1|1|1|7|0|292
Chr7 exon 89769370 89769931 89769370 ID=MsG0780041339.01.T01:exon:15525;Parent=MsG0780041339.01.T01
Chr7 exon 89770554 89770830 89770554 ID=MsG0780041339.01.T01:exon:15526;Parent=MsG0780041339.01.T01
Chr7 exon 89772009 89772086 89772009 ID=MsG0780041339.01.T01:exon:15527;Parent=MsG0780041339.01.T01
Chr7 exon 89774666 89774743 89774666 ID=MsG0780041339.01.T01:exon:15528;Parent=MsG0780041339.01.T01
Chr7 exon 89774824 89774889 89774824 ID=MsG0780041339.01.T01:exon:15529;Parent=MsG0780041339.01.T01
Chr7 exon 89775002 89775082 89775002 ID=MsG0780041339.01.T01:exon:15530;Parent=MsG0780041339.01.T01
Chr7 exon 89775463 89775558 89775463 ID=MsG0780041339.01.T01:exon:15531;Parent=MsG0780041339.01.T01
Chr7 five_prime_UTR 89769370 89769728 89769370 ID=MsG0780041339.01.T01:five_prime_utr;Parent=MsG0780041339.01.T01
Chr7 CDS 89769729 89769931 89769729 ID=MsG0780041339.01.T01:cds;Parent=MsG0780041339.01.T01
Chr7 CDS 89770554 89770830 89770554 ID=MsG0780041339.01.T01:cds;Parent=MsG0780041339.01.T01
Chr7 CDS 89772009 89772086 89772009 ID=MsG0780041339.01.T01:cds;Parent=MsG0780041339.01.T01
Chr7 CDS 89774666 89774743 89774666 ID=MsG0780041339.01.T01:cds;Parent=MsG0780041339.01.T01
Chr7 CDS 89774824 89774889 89774824 ID=MsG0780041339.01.T01:cds;Parent=MsG0780041339.01.T01
Chr7 CDS 89775002 89775082 89775002 ID=MsG0780041339.01.T01:cds;Parent=MsG0780041339.01.T01
Chr7 CDS 89775463 89775558 89775463 ID=MsG0780041339.01.T01:cds;Parent=MsG0780041339.01.T01
Gene Sequence

>MsG0780041339.01.T01

ATGGCAACGCGAAATCGAACAGTAGAGTTCAGAAAGTACAGAGACAGCGTCAAAAGCTTACGCACTCCTCTTTCTTCATCAGCTTCTGCTTCTTCCGGTGGCGGTCCTGTCATTGAAATGGTCAACACTTCGCTTCTTCGTACCAATAATGGATCTTCTTATACTCCTCTCAGTACCCATGATCCTGGTCCTTCTTCCTCAAGTGATGCATTTACTGTGGGTTTGCCGCCATCTTGGGTGGATGATTCTGAAGAAATAGCTACAAATATACAAAGTGCAAAGGTTAAAATGTCTGAGTTAACAAAAGCTCATGCAAAGGCTTTGATGCCTTCGTTTGGCGATGGTAAAGATGATCAACGTCAGATTGAGACTCTCACCCGGGAAATTACGGCTCTCCTCAGAAAGTCTGAAGTGAGGCTAAAAAGACTTTCTGCTGGTAGAGGGTCTTCTGAGGATTCTAATGTCAGAAAAAATGTGCAGGGTTACGACGGGATTGACTTGGAAATGAACTTTAAAGGGAGTAGCTCTGGATTTCAGGATGATGAATTCGAGGATGTGGGTTTTAGTGAAGAGCAAATGACAAAGCTAAAGAAAAATGAACACATCTCAGCAGAAAGAGAGAGAGAAATTGATCAGGTTGCTAAATCAGTCCACGAACTTGCTCAGATCATGAAGGATCTCTCCGTTCTTGTGATAGACCAGGGAACAATTGTGGATAGAATTGACTACAACATTCAGAGTGTTGCTACAACCGTTGAGGAGGGCTTGAAGCAGTTGCAAAAGGTACTGGAGTTTGGTTTCTCAAAGGGCATTGAGTTTACAAAATCAGCCATATCATTGAATTTGAATGGCAATAGGGGGATGCTGCCCACAAAATAG
Protein sequence

>MsG0780041339.01.T01

MATRNRTVEFRKYRDSVKSLRTPLSSSASASSGGGPVIEMVNTSLLRTNNGSSYTPLSTHDPGPSSSSDAFTVGLPPSWVDDSEEIATNIQSAKVKMSELTKAHAKALMPSFGDGKDDQRQIETLTREITALLRKSEVRLKRLSAGRGSSEDSNVRKNVQGYDGIDLEMNFKGSSSGFQDDEFEDVGFSEEQMTKLKKNEHISAEREREIDQVAKSVHELAQIMKDLSVLVIDQGTIVDRIDYNIQSVATTVEEGLKQLQKVLEFGFSKGIEFTKSAISLNLNGNRGMLPTK*