AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041826.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041826.01.T01 MTR_7g117505 92.636 516 19 3 1 513 1 500 0.0 917
MsG0780041826.01.T01 MTR_5g017260 39.235 497 253 5 7 503 13 460 8.24e-130 386
MsG0780041826.01.T01 MTR_1g019270 40.800 500 240 8 7 503 11 457 9.23e-126 375
MsG0780041826.01.T01 MTR_3g086880 35.882 510 231 10 7 503 13 439 8.07e-99 305
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041826.01.T01 AT3G14360 54.579 535 180 7 7 513 19 518 0.0 581
MsG0780041826.01.T01 AT5G42930 43.629 463 211 6 50 510 52 466 1.07e-135 401
MsG0780041826.01.T01 AT5G67050 40.784 510 239 9 2 502 7 462 4.59e-123 369
MsG0780041826.01.T01 AT1G56630 39.062 512 249 8 7 503 7 470 1.63e-121 365
MsG0780041826.01.T01 AT1G45201 39.076 476 233 8 32 503 38 460 9.50e-108 330
MsG0780041826.01.T01 AT1G45201 39.076 476 233 8 32 503 63 485 2.59e-107 329
MsG0780041826.01.T01 AT5G42930 44.357 381 162 6 50 428 52 384 3.90e-107 325
MsG0780041826.01.T01 AT1G45201 38.404 401 190 7 32 428 38 385 7.93e-83 262

Find 143 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTCTTGTACAAACATTT+TGG 0.135108 7:-95596473 MsG0780041826.01.T01:CDS
AATGGGCAACCGTGCTTTAA+TGG 0.214227 7:-95597388 MsG0780041826.01.T01:CDS
CTCAATCTTCTTTCCCTTAA+CGG 0.235980 7:-95597561 MsG0780041826.01.T01:CDS
ATTTGGTATTAGTCAGCTTT+AGG 0.241730 7:-95597090 MsG0780041826.01.T01:CDS
CAAGTTCAAAGATGCAAATT+TGG 0.270920 7:-95597107 MsG0780041826.01.T01:CDS
TTCCCAGACCAAGGGCTTCT+AGG 0.282823 7:+95596975 None:intergenic
TTGTAGATTTCTATGATTGC+TGG 0.315170 7:-95597281 MsG0780041826.01.T01:CDS
CACAACATTTGAATGCTGTT+TGG 0.316021 7:-95596032 MsG0780041826.01.T01:CDS
GAGATTCATGGAACCTCATT+TGG 0.330877 7:-95596570 MsG0780041826.01.T01:CDS
GATGCAAAATTCATAGTTAC+TGG 0.336865 7:-95596725 MsG0780041826.01.T01:CDS
CTTCTTCATTTGATTACAAT+TGG 0.343545 7:-95597683 MsG0780041826.01.T01:CDS
GCCCTGTTCCAAAGTACTTC+AGG 0.345528 7:-95596544 MsG0780041826.01.T01:CDS
ACAACATTTGAATGCTGTTT+GGG 0.345731 7:-95596031 MsG0780041826.01.T01:CDS
ATAGTTACTGGCCATAGCTT+GGG 0.353246 7:-95596713 MsG0780041826.01.T01:CDS
CGCATACTGGTAAGAATAAT+AGG 0.356598 7:-95595946 MsG0780041826.01.T01:CDS
ATAATAGGACTGGCACTTCC+TGG 0.360195 7:-95595931 MsG0780041826.01.T01:CDS
CGTTGAAGGAGCAGAGTATA+AGG 0.365493 7:-95595980 MsG0780041826.01.T01:CDS
CCGTTGGAGATTAGAGTAGA+AGG 0.368182 7:+95596934 None:intergenic
TTTGGTATTAGTCAGCTTTA+GGG 0.368635 7:-95597089 MsG0780041826.01.T01:CDS
CTTCCTAGAAGCCCTTGGTC+TGG 0.376069 7:-95596978 MsG0780041826.01.T01:CDS
TTCTCCGCTGGTGTCTTCTC+AGG 0.382718 7:+95596803 None:intergenic
TCTTTGCTATTCCTATCTAC+TGG 0.386218 7:-95597608 MsG0780041826.01.T01:CDS
TCTACAAATGCTGCTAATCT+TGG 0.386688 7:-95596902 MsG0780041826.01.T01:CDS
AGGGTTCTCATATGCTATCT+TGG 0.395288 7:+95597347 None:intergenic
CAAAGAAGGAAGCACCGTTA+AGG 0.395736 7:+95597547 None:intergenic
CTGCTTGGTGTATACACATT+TGG 0.398828 7:-95596623 MsG0780041826.01.T01:CDS
GGAAGGGTGGTTTCGCATAC+TGG 0.399300 7:-95595959 MsG0780041826.01.T01:CDS
GAAGGCTTCATCTCCATTTG+TGG 0.401782 7:+95597419 None:intergenic
GCATGAGGAGATGGAGATAA+TGG 0.407882 7:-95596651 MsG0780041826.01.T01:CDS
ACCCTGAAGTACTTTGGAAC+AGG 0.408412 7:+95596542 None:intergenic
TGAAGCCTTCCAACCACAAA+TGG 0.410595 7:-95597406 MsG0780041826.01.T01:CDS
AAGTACTGTTGGAAACAATA+TGG 0.413778 7:+95596679 None:intergenic
AAGAAGCCAGTCCAGTAGAT+AGG 0.416718 7:+95597597 None:intergenic
AAAGAAGGAAGCACCGTTAA+GGG 0.420222 7:+95597548 None:intergenic
TCCAAAATGTTTGTACAAGA+AGG 0.422902 7:+95596472 None:intergenic
GTTGTTGAGAAGAGCAAAGA+AGG 0.423972 7:+95597533 None:intergenic
GATGAATTTGCGAACAAGAA+TGG 0.428143 7:+95597635 None:intergenic
CATAGTTACTGGCCATAGCT+TGG 0.433083 7:-95596714 MsG0780041826.01.T01:CDS
ATTAGCAGCATTTGTAGAGT+TGG 0.448006 7:+95596907 None:intergenic
CTTGATCTTCAAACCACAAA+TGG 0.448925 7:-95597432 MsG0780041826.01.T01:CDS
AAAGCACGGTTGCCCATTTG+TGG 0.451532 7:+95597393 None:intergenic
TAAACCACCCTGAAGTACTT+TGG 0.452707 7:+95596536 None:intergenic
TCTACAAAACCACCCTTCTC+AGG 0.455910 7:+95597768 None:intergenic
TTGACAATGGGTTACGTTGA+AGG 0.459309 7:-95595994 MsG0780041826.01.T01:CDS
GCTATTCCTATCTACTGGAC+TGG 0.463428 7:-95597603 MsG0780041826.01.T01:CDS
TTCCTAGAAGCCCTTGGTCT+GGG 0.464258 7:-95596977 MsG0780041826.01.T01:CDS
GGTGTCTTCTCAGGCACAAA+AGG 0.465664 7:+95596812 None:intergenic
ATTACAATTGGAGTTGGAGA+TGG 0.466278 7:-95597671 MsG0780041826.01.T01:CDS
CCCTGTTCCAAAGTACTTCA+GGG 0.470135 7:-95596543 MsG0780041826.01.T01:CDS
GACATTTGGGATTTGATACC+AGG 0.472553 7:+95597018 None:intergenic
GAGATTAGAGTAGAAGGTGG+TGG 0.472721 7:+95596940 None:intergenic
ACATTTGGCCAACCTAGGAT+TGG 0.481942 7:-95596608 MsG0780041826.01.T01:CDS
GCCAACCTAGGATTGGGAAT+AGG 0.484053 7:-95596601 MsG0780041826.01.T01:CDS
CATCTTTGAACTTGTCACAT+AGG 0.485791 7:+95597116 None:intergenic
AACTCTGGCACATTGTTCTC+AGG 0.485866 7:-95596857 MsG0780041826.01.T01:CDS
TAGGCAGCTTGGGAGATTCA+TGG 0.486566 7:-95596582 MsG0780041826.01.T01:CDS
GGATTGGGAATAGGCAGCTT+GGG 0.488048 7:-95596592 MsG0780041826.01.T01:CDS
TCTGATTGTGCGTCCTGAGA+AGG 0.491726 7:-95597781 MsG0780041826.01.T01:CDS
CATTTGGCCAACCTAGGATT+GGG 0.493501 7:-95596607 MsG0780041826.01.T01:CDS
CATTTGATTACAATTGGAGT+TGG 0.494694 7:-95597677 MsG0780041826.01.T01:CDS
AGATTAGAGTAGAAGGTGGT+GGG 0.495244 7:+95596941 None:intergenic
GCTGTTTGGGAGTTAGTTCG+AGG 0.496117 7:-95596018 MsG0780041826.01.T01:CDS
CTTCTCAACAACTTCATACA+TGG 0.497151 7:-95597522 MsG0780041826.01.T01:CDS
CACGGTTGCCCATTTGTGGT+TGG 0.497480 7:+95597397 None:intergenic
GAACCGAACAGAAATTTCTT+CGG 0.502688 7:-95596072 MsG0780041826.01.T01:CDS
GATTTCTATGATTGCTGGAA+TGG 0.504683 7:-95597276 MsG0780041826.01.T01:intron
TTAGTTCGAGGCTTGACAAT+GGG 0.506758 7:-95596006 MsG0780041826.01.T01:CDS
CTGTTGGAAACAATATGGCC+AGG 0.510001 7:+95596684 None:intergenic
AAAATGTCGTCAACCACCAT+TGG 0.511757 7:-95597314 MsG0780041826.01.T01:CDS
CAATTGGTCACTTAGATGCC+AGG 0.513062 7:-95597455 MsG0780041826.01.T01:CDS
AGGATTGGGAATAGGCAGCT+TGG 0.513812 7:-95596593 MsG0780041826.01.T01:CDS
ATTCCGAAGAAATTTCTGTT+CGG 0.515266 7:+95596069 None:intergenic
TGTGGTTTGAAGATCAAGCC+TGG 0.517523 7:+95597437 None:intergenic
CACGACCAAGAAAAGCATAT+CGG 0.519804 7:+95597739 None:intergenic
TAGTTACTGGCCATAGCTTG+GGG 0.520619 7:-95596712 MsG0780041826.01.T01:CDS
GTTGCCCATTTGTGGTTGGA+AGG 0.523214 7:+95597401 None:intergenic
TCATGCACCACAAGTACTGT+TGG 0.524998 7:+95596668 None:intergenic
GAGCAGAGTATAAGGAAGGG+TGG 0.532038 7:-95595972 MsG0780041826.01.T01:CDS
GACCAGTCATGAGCATCAAA+AGG 0.532110 7:+95597058 None:intergenic
TTGTAGAGTTGGCTTTCCGT+TGG 0.532517 7:+95596918 None:intergenic
AAGCTTATTAGAGAAGCATA+AGG 0.537206 7:-95596747 MsG0780041826.01.T01:CDS
GAAGAGTGGTCATACCCGAC+AGG 0.539199 7:-95597500 MsG0780041826.01.T01:CDS
TATGTCAACTCTATCAGACT+TGG 0.541288 7:-95595883 MsG0780041826.01.T01:CDS
TTTGTCATCATAAGGCAACC+TGG 0.541540 7:+95596496 None:intergenic
ATCGGCTTCCTAGAAGCCCT+TGG 0.543687 7:-95596983 MsG0780041826.01.T01:CDS
TTACAATTGGAGTTGGAGAT+GGG 0.545105 7:-95597670 MsG0780041826.01.T01:CDS
GAAGCCTTCCAACCACAAAT+GGG 0.546029 7:-95597405 MsG0780041826.01.T01:CDS
AAAGATTGAGAACCCCTGTC+GGG 0.548900 7:+95597486 None:intergenic
TTAGATAGAAGACATGTGAA+TGG 0.554955 7:+95595849 None:intergenic
ACTTGTGGTGCATGAGGAGA+TGG 0.558129 7:-95596660 MsG0780041826.01.T01:CDS
GCCTATTCCCAATCCTAGGT+TGG 0.558482 7:+95596600 None:intergenic
GGAACAGGGCGATCCAAATG+AGG 0.559604 7:+95596557 None:intergenic
CTACAAAGTGCATGTTCCAA+TGG 0.560344 7:+95597298 None:intergenic
TTGTCATCATAAGGCAACCT+GGG 0.564352 7:+95596497 None:intergenic
GAAGGAGCAGAGTATAAGGA+AGG 0.565269 7:-95595976 MsG0780041826.01.T01:CDS
CAACTCTATCAGACTTGGGA+AGG 0.566807 7:-95595878 MsG0780041826.01.T01:CDS
GAGATAATGGATAGACTGCT+TGG 0.572519 7:-95596638 MsG0780041826.01.T01:CDS
ATTGCAATGATATTGTCCCC+AGG 0.574956 7:-95596514 MsG0780041826.01.T01:CDS
GATTTCTATTTCCCAGACCA+AGG 0.576552 7:+95596966 None:intergenic
CTGATTGTGCGTCCTGAGAA+GGG 0.577244 7:-95597780 MsG0780041826.01.T01:CDS
GATAGAGTTGACATAATCTG+TGG 0.578242 7:+95595891 None:intergenic
AGCTGCCTATTCCCAATCCT+AGG 0.580342 7:+95596596 None:intergenic
ATTTCTATTTCCCAGACCAA+GGG 0.584064 7:+95596967 None:intergenic
AACAGTACTTGTGGTGCATG+AGG 0.587996 7:-95596666 MsG0780041826.01.T01:CDS
TTGGTATTAGTCAGCTTTAG+GGG 0.588660 7:-95597088 MsG0780041826.01.T01:CDS
AAGGAGCAGAGTATAAGGAA+GGG 0.589609 7:-95595975 MsG0780041826.01.T01:CDS
ATCATCACCAAAGAATGTGA+AGG 0.598485 7:-95596097 MsG0780041826.01.T01:intron
GCTTCTCACAATGTCATATG+CGG 0.599243 7:+95596778 None:intergenic
TATACACATTTGGCCAACCT+AGG 0.602523 7:-95596613 MsG0780041826.01.T01:CDS
ATGTCAACTCTATCAGACTT+GGG 0.605956 7:-95595882 MsG0780041826.01.T01:CDS
CCCTGAAGTACTTTGGAACA+GGG 0.610686 7:+95596543 None:intergenic
CTCAGGCACCGACTCTGACG+AGG 0.611337 7:-95596840 MsG0780041826.01.T01:CDS
CGTTAAGGGAAAGAAGATTG+AGG 0.612277 7:+95597562 None:intergenic
ATTGTTTCCAACAGTACTTG+TGG 0.614314 7:-95596675 MsG0780041826.01.T01:CDS
GTTAGTTCGAGGCTTGACAA+TGG 0.616794 7:-95596007 MsG0780041826.01.T01:CDS
TGGTATCAAATCCCAAATGT+CGG 0.618857 7:-95597016 MsG0780041826.01.T01:CDS
TGTTGGAAACAATATGGCCA+GGG 0.619060 7:+95596685 None:intergenic
AAAAGATTGAGAACCCCTGT+CGG 0.621473 7:+95597485 None:intergenic
CAACTTCATACATGGAAGAG+TGG 0.622203 7:-95597514 MsG0780041826.01.T01:CDS
TGAGAACAATGTGCCAGAGT+TGG 0.622403 7:+95596859 None:intergenic
ACTGGTAAGAATAATAGGAC+TGG 0.622505 7:-95595941 MsG0780041826.01.T01:CDS
TGCAGAGATCCATTAAAGCA+CGG 0.628696 7:+95597379 None:intergenic
ATCACCAAAGAATGTGAAGG+AGG 0.631749 7:-95596094 MsG0780041826.01.T01:intron
ACATAGGATGAAGACTTGAG+TGG 0.632292 7:+95597132 None:intergenic
CCTTCTACTCTAATCTCCAA+CGG 0.636894 7:-95596934 MsG0780041826.01.T01:CDS
ATAGAGTTGACATAATCTGT+GGG 0.638943 7:+95595892 None:intergenic
AAGAGTGGTCATACCCGACA+GGG 0.643264 7:-95597499 MsG0780041826.01.T01:CDS
AGGTTGATCCTCGTCAGAGT+CGG 0.646738 7:+95596832 None:intergenic
GGGCTTCTAGGAAGCCGATG+TGG 0.656670 7:+95596987 None:intergenic
TGCATGTGAAGTGATGGATA+CGG 0.662826 7:-95597814 None:intergenic
AAGTGATGGATACGGAGTTG+AGG 0.664659 7:-95597806 None:intergenic
GTTACTGGCCATAGCTTGGG+GGG 0.664972 7:-95596710 MsG0780041826.01.T01:CDS
TGTCATCATAAGGCAACCTG+GGG 0.670716 7:+95596498 None:intergenic
TGTTCCAAAGTACTTCAGGG+TGG 0.670776 7:-95596540 MsG0780041826.01.T01:CDS
CAAAGTGCATGTTCCAATGG+TGG 0.682868 7:+95597301 None:intergenic
TGTGCCTGAGAAGACACCAG+CGG 0.683446 7:-95596807 MsG0780041826.01.T01:CDS
AGTTACTGGCCATAGCTTGG+GGG 0.698564 7:-95596711 MsG0780041826.01.T01:CDS
TTGGAGATTAGAGTAGAAGG+TGG 0.708850 7:+95596937 None:intergenic
TGCGAACAAGAATGGAAACG+AGG 0.725687 7:+95597643 None:intergenic
ATTGTGCGTCCTGAGAAGGG+TGG 0.733057 7:-95597777 MsG0780041826.01.T01:CDS
AGAGTGGTCATACCCGACAG+GGG 0.737204 7:-95597498 MsG0780041826.01.T01:CDS
CGAGGTCATCATCGACAAAG+CGG 0.739133 7:+95597709 None:intergenic
AATCAAATGAAGAAGAAACG+AGG 0.763570 7:+95597691 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTAAATATTTTGAAGAA+TGG + Chr7:95597516-95597535 None:intergenic 10.0%
!!! AATTAAATATTTTGAAGAAT+GGG + Chr7:95597515-95597534 None:intergenic 10.0%
!! TTTGATACTAAATGTGTTAT+TGG - Chr7:95597434-95597453 MsG0780041826.01.T01:CDS 20.0%
! ATGATCGAATTGATTAATGA+AGG + Chr7:95596478-95596497 None:intergenic 25.0%
! CTTCTTCATTTGATTACAAT+TGG - Chr7:95595967-95595986 MsG0780041826.01.T01:CDS 25.0%
! TGAAATTGAAAGATAGCAAA+TGG + Chr7:95597295-95597314 None:intergenic 25.0%
!! CAATCTTTTGTAAGTACAAT+TGG - Chr7:95596179-95596198 MsG0780041826.01.T01:intron 25.0%
AATCAAATGAAGAAGAAACG+AGG + Chr7:95595962-95595981 None:intergenic 30.0%
ATAGAGTTGACATAATCTGT+GGG + Chr7:95597761-95597780 None:intergenic 30.0%
ATTCCGAAGAAATTTCTGTT+CGG + Chr7:95597584-95597603 None:intergenic 30.0%
ATTTGGTATTAGTCAGCTTT+AGG - Chr7:95596560-95596579 MsG0780041826.01.T01:CDS 30.0%
CAAGTTCAAAGATGCAAATT+TGG - Chr7:95596543-95596562 MsG0780041826.01.T01:CDS 30.0%
CATTTGATTACAATTGGAGT+TGG - Chr7:95595973-95595992 MsG0780041826.01.T01:CDS 30.0%
GATGCAAAATTCATAGTTAC+TGG - Chr7:95596925-95596944 MsG0780041826.01.T01:CDS 30.0%
TCCAAAATGTTTGTACAAGA+AGG + Chr7:95597181-95597200 None:intergenic 30.0%
TCGAATTGATTAATGAAGGA+AGG + Chr7:95596474-95596493 None:intergenic 30.0%
TTAGATAGAAGACATGTGAA+TGG + Chr7:95597804-95597823 None:intergenic 30.0%
TTGTAGATTTCTATGATTGC+TGG - Chr7:95596369-95596388 MsG0780041826.01.T01:intron 30.0%
TTTGGTATTAGTCAGCTTTA+GGG - Chr7:95596561-95596580 MsG0780041826.01.T01:CDS 30.0%
! AAGCTTATTAGAGAAGCATA+AGG - Chr7:95596903-95596922 MsG0780041826.01.T01:CDS 30.0%
! AAGTACTGTTGGAAACAATA+TGG + Chr7:95596974-95596993 None:intergenic 30.0%
! ACAACATTTGAATGCTGTTT+GGG - Chr7:95597619-95597638 MsG0780041826.01.T01:CDS 30.0%
! ACCTTCTTGTACAAACATTT+TGG - Chr7:95597177-95597196 MsG0780041826.01.T01:intron 30.0%
! ACGACATTTTTGATGAGTTT+AGG + Chr7:95596326-95596345 None:intergenic 30.0%
! CGACATTTTTGATGAGTTTA+GGG + Chr7:95596325-95596344 None:intergenic 30.0%
! TTATTCCGATATGCTTTTCT+TGG - Chr7:95595906-95595925 MsG0780041826.01.T01:CDS 30.0%
!! AAGAAGGTTTTGTCATCATA+AGG + Chr7:95597165-95597184 None:intergenic 30.0%
!! TTGGTTTTTGAAGAGTGATT+AGG + Chr7:95596775-95596794 None:intergenic 30.0%
!!! CTACTGATTTTGATTATTCC+TGG - Chr7:95596614-95596633 MsG0780041826.01.T01:CDS 30.0%
!!! TACCTACTTTTTCAATGTAG+TGG + Chr7:95597224-95597243 None:intergenic 30.0%
AATGTCGGAAAAATCCACAT+CGG - Chr7:95596649-95596668 MsG0780041826.01.T01:CDS 35.0%
ACTGGTAAGAATAATAGGAC+TGG - Chr7:95597709-95597728 MsG0780041826.01.T01:CDS 35.0%
AGCCACTACATTGAAAAAGT+AGG - Chr7:95597219-95597238 MsG0780041826.01.T01:intron 35.0%
ATCATCACCAAAGAATGTGA+AGG - Chr7:95597553-95597572 MsG0780041826.01.T01:CDS 35.0%
ATGTCAACTCTATCAGACTT+GGG - Chr7:95597768-95597787 MsG0780041826.01.T01:CDS 35.0%
ATTACAATTGGAGTTGGAGA+TGG - Chr7:95595979-95595998 MsG0780041826.01.T01:CDS 35.0%
ATTAGCAGCATTTGTAGAGT+TGG + Chr7:95596746-95596765 None:intergenic 35.0%
ATTGTTTCCAACAGTACTTG+TGG - Chr7:95596975-95596994 MsG0780041826.01.T01:CDS 35.0%
ATTTCTATTTCCCAGACCAA+GGG + Chr7:95596686-95596705 None:intergenic 35.0%
CACAACATTTGAATGCTGTT+TGG - Chr7:95597618-95597637 MsG0780041826.01.T01:CDS 35.0%
CATCTTTGAACTTGTCACAT+AGG + Chr7:95596537-95596556 None:intergenic 35.0%
CGCATACTGGTAAGAATAAT+AGG - Chr7:95597704-95597723 MsG0780041826.01.T01:CDS 35.0%
CTCAATCTTCTTTCCCTTAA+CGG - Chr7:95596089-95596108 MsG0780041826.01.T01:intron 35.0%
CTTCTCAACAACTTCATACA+TGG - Chr7:95596128-95596147 MsG0780041826.01.T01:intron 35.0%
CTTGATCTTCAAACCACAAA+TGG - Chr7:95596218-95596237 MsG0780041826.01.T01:intron 35.0%
GAACCGAACAGAAATTTCTT+CGG - Chr7:95597578-95597597 MsG0780041826.01.T01:CDS 35.0%
GATAGAGTTGACATAATCTG+TGG + Chr7:95597762-95597781 None:intergenic 35.0%
GATGAATTTGCGAACAAGAA+TGG + Chr7:95596018-95596037 None:intergenic 35.0%
GATTTCTATGATTGCTGGAA+TGG - Chr7:95596374-95596393 MsG0780041826.01.T01:intron 35.0%
TATGTCAACTCTATCAGACT+TGG - Chr7:95597767-95597786 MsG0780041826.01.T01:CDS 35.0%
TCTACAAATGCTGCTAATCT+TGG - Chr7:95596748-95596767 MsG0780041826.01.T01:CDS 35.0%
TGGTATCAAATCCCAAATGT+CGG - Chr7:95596634-95596653 MsG0780041826.01.T01:CDS 35.0%
TTACAATTGGAGTTGGAGAT+GGG - Chr7:95595980-95595999 MsG0780041826.01.T01:CDS 35.0%
! ATGTGGATTTTTCCGACATT+TGG + Chr7:95596649-95596668 None:intergenic 35.0%
! TGTGGATTTTTCCGACATTT+GGG + Chr7:95596648-95596667 None:intergenic 35.0%
! TTGGTATTAGTCAGCTTTAG+GGG - Chr7:95596562-95596581 MsG0780041826.01.T01:CDS 35.0%
!! TCTTTGCTATTCCTATCTAC+TGG - Chr7:95596042-95596061 MsG0780041826.01.T01:CDS 35.0%
AAAAGATTGAGAACCCCTGT+CGG + Chr7:95596168-95596187 None:intergenic 40.0%
AAAATGTCGTCAACCACCAT+TGG - Chr7:95596336-95596355 MsG0780041826.01.T01:intron 40.0%
AAGGAGCAGAGTATAAGGAA+GGG - Chr7:95597675-95597694 MsG0780041826.01.T01:CDS 40.0%
ACATAGGATGAAGACTTGAG+TGG + Chr7:95596521-95596540 None:intergenic 40.0%
AGATTAGAGTAGAAGGTGGT+GGG + Chr7:95596712-95596731 None:intergenic 40.0%
AGGGTTCTCATATGCTATCT+TGG + Chr7:95596306-95596325 None:intergenic 40.0%
ATAGTTACTGGCCATAGCTT+GGG - Chr7:95596937-95596956 MsG0780041826.01.T01:CDS 40.0%
ATCACCAAAGAATGTGAAGG+AGG - Chr7:95597556-95597575 MsG0780041826.01.T01:CDS 40.0%
ATTGCAATGATATTGTCCCC+AGG - Chr7:95597136-95597155 MsG0780041826.01.T01:CDS 40.0%
CAACTTCATACATGGAAGAG+TGG - Chr7:95596136-95596155 MsG0780041826.01.T01:intron 40.0%
CACTCTTCAAAAACCAACTC+TGG - Chr7:95596778-95596797 MsG0780041826.01.T01:CDS 40.0%
CCTTCTACTCTAATCTCCAA+CGG - Chr7:95596716-95596735 MsG0780041826.01.T01:CDS 40.0%
CGTTAAGGGAAAGAAGATTG+AGG + Chr7:95596091-95596110 None:intergenic 40.0%
CTACAAAGTGCATGTTCCAA+TGG + Chr7:95596355-95596374 None:intergenic 40.0%
GAGATTCATGGAACCTCATT+TGG - Chr7:95597080-95597099 MsG0780041826.01.T01:CDS 40.0%
GATTTCTATTTCCCAGACCA+AGG + Chr7:95596687-95596706 None:intergenic 40.0%
GCTTCTCACAATGTCATATG+CGG + Chr7:95596875-95596894 None:intergenic 40.0%
GTTGTTGAGAAGAGCAAAGA+AGG + Chr7:95596120-95596139 None:intergenic 40.0%
TATACACATTTGGCCAACCT+AGG - Chr7:95597037-95597056 MsG0780041826.01.T01:CDS 40.0%
TGCAGAGATCCATTAAAGCA+CGG + Chr7:95596274-95596293 None:intergenic 40.0%
TGTTGGAAACAATATGGCCA+GGG + Chr7:95596968-95596987 None:intergenic 40.0%
TTAGTTCGAGGCTTGACAAT+GGG - Chr7:95597644-95597663 MsG0780041826.01.T01:CDS 40.0%
TTGGAGATTAGAGTAGAAGG+TGG + Chr7:95596716-95596735 None:intergenic 40.0%
TTGTCATCATAAGGCAACCT+GGG + Chr7:95597156-95597175 None:intergenic 40.0%
TTTGTCATCATAAGGCAACC+TGG + Chr7:95597157-95597176 None:intergenic 40.0%
! AACCTTTTGATGCTCATGAC+TGG - Chr7:95596590-95596609 MsG0780041826.01.T01:CDS 40.0%
! CACGACCAAGAAAAGCATAT+CGG + Chr7:95595914-95595933 None:intergenic 40.0%
! GACATTTGGGATTTGATACC+AGG + Chr7:95596635-95596654 None:intergenic 40.0%
! TAAACCACCCTGAAGTACTT+TGG + Chr7:95597117-95597136 None:intergenic 40.0%
!! AAAGAAGGAAGCACCGTTAA+GGG + Chr7:95596105-95596124 None:intergenic 40.0%
!! CTGCTTGGTGTATACACATT+TGG - Chr7:95597027-95597046 MsG0780041826.01.T01:CDS 40.0%
!! GAGATAATGGATAGACTGCT+TGG - Chr7:95597012-95597031 MsG0780041826.01.T01:CDS 40.0%
!! TTGACAATGGGTTACGTTGA+AGG - Chr7:95597656-95597675 MsG0780041826.01.T01:CDS 40.0%
AAAGATTGAGAACCCCTGTC+GGG + Chr7:95596167-95596186 None:intergenic 45.0%
AACAGTACTTGTGGTGCATG+AGG - Chr7:95596984-95597003 MsG0780041826.01.T01:CDS 45.0%
AACTCTGGCACATTGTTCTC+AGG - Chr7:95596793-95596812 MsG0780041826.01.T01:CDS 45.0%
AAGAAGCCAGTCCAGTAGAT+AGG + Chr7:95596056-95596075 None:intergenic 45.0%
AATGGGCAACCGTGCTTTAA+TGG - Chr7:95596262-95596281 MsG0780041826.01.T01:intron 45.0%
ACATTTGGCCAACCTAGGAT+TGG - Chr7:95597042-95597061 MsG0780041826.01.T01:CDS 45.0%
CAAAGTGCATGTTCCAATGG+TGG + Chr7:95596352-95596371 None:intergenic 45.0%
CAACTCTATCAGACTTGGGA+AGG - Chr7:95597772-95597791 MsG0780041826.01.T01:CDS 45.0%
CAATTGGTCACTTAGATGCC+AGG - Chr7:95596195-95596214 MsG0780041826.01.T01:intron 45.0%
CATAGTTACTGGCCATAGCT+TGG - Chr7:95596936-95596955 MsG0780041826.01.T01:CDS 45.0%
CATTTGGCCAACCTAGGATT+GGG - Chr7:95597043-95597062 MsG0780041826.01.T01:CDS 45.0%
CCGTTGGAGATTAGAGTAGA+AGG + Chr7:95596719-95596738 None:intergenic 45.0%
CGTTGAAGGAGCAGAGTATA+AGG - Chr7:95597670-95597689 MsG0780041826.01.T01:CDS 45.0%
CTGTTGGAAACAATATGGCC+AGG + Chr7:95596969-95596988 None:intergenic 45.0%
GAAGCCTTCCAACCACAAAT+GGG - Chr7:95596245-95596264 MsG0780041826.01.T01:intron 45.0%
GAAGGAGCAGAGTATAAGGA+AGG - Chr7:95597674-95597693 MsG0780041826.01.T01:CDS 45.0%
GAAGGCTTCATCTCCATTTG+TGG + Chr7:95596234-95596253 None:intergenic 45.0%
GACCAGTCATGAGCATCAAA+AGG + Chr7:95596595-95596614 None:intergenic 45.0%
GAGATTAGAGTAGAAGGTGG+TGG + Chr7:95596713-95596732 None:intergenic 45.0%
GCATGAGGAGATGGAGATAA+TGG - Chr7:95596999-95597018 MsG0780041826.01.T01:CDS 45.0%
GCTATTCCTATCTACTGGAC+TGG - Chr7:95596047-95596066 MsG0780041826.01.T01:CDS 45.0%
GGTTCCTCCTTCACATTCTT+TGG + Chr7:95597563-95597582 None:intergenic 45.0%
GTTAGTTCGAGGCTTGACAA+TGG - Chr7:95597643-95597662 MsG0780041826.01.T01:CDS 45.0%
TAGTTACTGGCCATAGCTTG+GGG - Chr7:95596938-95596957 MsG0780041826.01.T01:CDS 45.0%
TCTACAAAACCACCCTTCTC+AGG + Chr7:95595885-95595904 None:intergenic 45.0%
TGAAGCCTTCCAACCACAAA+TGG - Chr7:95596244-95596263 MsG0780041826.01.T01:intron 45.0%
TGAGAACAATGTGCCAGAGT+TGG + Chr7:95596794-95596813 None:intergenic 45.0%
TGCGAACAAGAATGGAAACG+AGG + Chr7:95596010-95596029 None:intergenic 45.0%
TGTCATCATAAGGCAACCTG+GGG + Chr7:95597155-95597174 None:intergenic 45.0%
TGTGGTTTGAAGATCAAGCC+TGG + Chr7:95596216-95596235 None:intergenic 45.0%
! ATAATAGGACTGGCACTTCC+TGG - Chr7:95597719-95597738 MsG0780041826.01.T01:CDS 45.0%
! CCCTGTTCCAAAGTACTTCA+GGG - Chr7:95597107-95597126 MsG0780041826.01.T01:CDS 45.0%
! TCATGCACCACAAGTACTGT+TGG + Chr7:95596985-95597004 None:intergenic 45.0%
! TGTTCCAAAGTACTTCAGGG+TGG - Chr7:95597110-95597129 MsG0780041826.01.T01:CDS 45.0%
!! ACCCTGAAGTACTTTGGAAC+AGG + Chr7:95597111-95597130 None:intergenic 45.0%
!! ACTGGCACTTCCTGGTTTTT+CGG - Chr7:95597727-95597746 MsG0780041826.01.T01:CDS 45.0%
!! CAAAGAAGGAAGCACCGTTA+AGG + Chr7:95596106-95596125 None:intergenic 45.0%
!! CCCTGAAGTACTTTGGAACA+GGG + Chr7:95597110-95597129 None:intergenic 45.0%
!! TTGTAGAGTTGGCTTTCCGT+TGG + Chr7:95596735-95596754 None:intergenic 45.0%
!!! AATATTTAATTTTATTGTTT+TGG - Chr7:95597524-95597543 MsG0780041826.01.T01:CDS 5.0%
!!! TTTTAAAAAAAAACAAAATA+TGG + Chr7:95597360-95597379 None:intergenic 5.0%
AAAGCACGGTTGCCCATTTG+TGG + Chr7:95596260-95596279 None:intergenic 50.0%
AAGAGTGGTCATACCCGACA+GGG - Chr7:95596151-95596170 MsG0780041826.01.T01:intron 50.0%
ACTTGTGGTGCATGAGGAGA+TGG - Chr7:95596990-95597009 MsG0780041826.01.T01:CDS 50.0%
AGCTGCCTATTCCCAATCCT+AGG + Chr7:95597057-95597076 None:intergenic 50.0%
AGGATTGGGAATAGGCAGCT+TGG - Chr7:95597057-95597076 MsG0780041826.01.T01:CDS 50.0%
AGTTACTGGCCATAGCTTGG+GGG - Chr7:95596939-95596958 MsG0780041826.01.T01:CDS 50.0%
CGAGGTCATCATCGACAAAG+CGG + Chr7:95595944-95595963 None:intergenic 50.0%
CTGATTGTGCGTCCTGAGAA+GGG - Chr7:95595870-95595889 MsG0780041826.01.T01:CDS 50.0%
GAGCAGAGTATAAGGAAGGG+TGG - Chr7:95597678-95597697 MsG0780041826.01.T01:CDS 50.0%
GCCAACCTAGGATTGGGAAT+AGG - Chr7:95597049-95597068 MsG0780041826.01.T01:CDS 50.0%
GCCTATTCCCAATCCTAGGT+TGG + Chr7:95597053-95597072 None:intergenic 50.0%
GCTGTTTGGGAGTTAGTTCG+AGG - Chr7:95597632-95597651 MsG0780041826.01.T01:CDS 50.0%
GGACAATGAGCCGAAAAACC+AGG + Chr7:95597740-95597759 None:intergenic 50.0%
GGATTGGGAATAGGCAGCTT+GGG - Chr7:95597058-95597077 MsG0780041826.01.T01:CDS 50.0%
GGTGTCTTCTCAGGCACAAA+AGG + Chr7:95596841-95596860 None:intergenic 50.0%
GTTGCCCATTTGTGGTTGGA+AGG + Chr7:95596252-95596271 None:intergenic 50.0%
TAGGCAGCTTGGGAGATTCA+TGG - Chr7:95597068-95597087 MsG0780041826.01.T01:CDS 50.0%
TCTGATTGTGCGTCCTGAGA+AGG - Chr7:95595869-95595888 MsG0780041826.01.T01:CDS 50.0%
TTCCTAGAAGCCCTTGGTCT+GGG - Chr7:95596673-95596692 MsG0780041826.01.T01:CDS 50.0%
! AGGTTGATCCTCGTCAGAGT+CGG + Chr7:95596821-95596840 None:intergenic 50.0%
! GCCCTGTTCCAAAGTACTTC+AGG - Chr7:95597106-95597125 MsG0780041826.01.T01:CDS 50.0%
! TCATATGCGGTTTTCTCCGC+TGG + Chr7:95596862-95596881 None:intergenic 50.0%
AGAGTGGTCATACCCGACAG+GGG - Chr7:95596152-95596171 MsG0780041826.01.T01:intron 55.0%
AGCCTCTCTGCTGACATGTG+AGG + Chr7:95597322-95597341 None:intergenic 55.0%
ATTGTGCGTCCTGAGAAGGG+TGG - Chr7:95595873-95595892 MsG0780041826.01.T01:CDS 55.0%
CACGGTTGCCCATTTGTGGT+TGG + Chr7:95596256-95596275 None:intergenic 55.0%
CTTCCTAGAAGCCCTTGGTC+TGG - Chr7:95596672-95596691 MsG0780041826.01.T01:CDS 55.0%
GAAGAGTGGTCATACCCGAC+AGG - Chr7:95596150-95596169 MsG0780041826.01.T01:intron 55.0%
GGAACAGGGCGATCCAAATG+AGG + Chr7:95597096-95597115 None:intergenic 55.0%
GGAAGGGTGGTTTCGCATAC+TGG - Chr7:95597691-95597710 MsG0780041826.01.T01:CDS 55.0%
GTTACTGGCCATAGCTTGGG+GGG - Chr7:95596940-95596959 MsG0780041826.01.T01:CDS 55.0%
TGCCTCACATGTCAGCAGAG+AGG - Chr7:95597317-95597336 MsG0780041826.01.T01:CDS 55.0%
TGTGCCTGAGAAGACACCAG+CGG - Chr7:95596843-95596862 MsG0780041826.01.T01:CDS 55.0%
TTCCCAGACCAAGGGCTTCT+AGG + Chr7:95596678-95596697 None:intergenic 55.0%
TTCTCCGCTGGTGTCTTCTC+AGG + Chr7:95596850-95596869 None:intergenic 55.0%
! ATCGGCTTCCTAGAAGCCCT+TGG - Chr7:95596667-95596686 MsG0780041826.01.T01:CDS 55.0%
! GGGCTTCTAGGAAGCCGATG+TGG + Chr7:95596666-95596685 None:intergenic 60.0%
!! CTCAGGCACCGACTCTGACG+AGG - Chr7:95596810-95596829 MsG0780041826.01.T01:CDS 65.0%
CCAGGGCTCCCCCCAAGCTA+TGG + Chr7:95596951-95596970 None:intergenic 70.0%
CCATAGCTTGGGGGGAGCCC+TGG - Chr7:95596948-95596967 MsG0780041826.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 95595849 95597823 95595849 ID=MsG0780041826.01;Name=MsG0780041826.01
Chr7 mRNA 95595849 95597823 95595849 ID=MsG0780041826.01.T01;Parent=MsG0780041826.01;Name=MsG0780041826.01.T01;_AED=0.24;_eAED=0.24;_QI=0|0|0|1|1|1|3|0|513
Chr7 exon 95597277 95597823 95597277 ID=MsG0780041826.01.T01:exon:21101;Parent=MsG0780041826.01.T01
Chr7 exon 95596436 95597172 95596436 ID=MsG0780041826.01.T01:exon:21100;Parent=MsG0780041826.01.T01
Chr7 exon 95595849 95596106 95595849 ID=MsG0780041826.01.T01:exon:21099;Parent=MsG0780041826.01.T01
Chr7 CDS 95597277 95597823 95597277 ID=MsG0780041826.01.T01:cds;Parent=MsG0780041826.01.T01
Chr7 CDS 95596436 95597172 95596436 ID=MsG0780041826.01.T01:cds;Parent=MsG0780041826.01.T01
Chr7 CDS 95595849 95596106 95595849 ID=MsG0780041826.01.T01:cds;Parent=MsG0780041826.01.T01
Gene Sequence

>MsG0780041826.01.T01

ATGGATACGGAGTTGAGGTATCTGATTGTGCGTCCTGAGAAGGGTGGTTTTGTAGAATTATTCCGATATGCTTTTCTTGGTCGTGACTTTCACCGCTTTGTCGATGATGACCTCGTTTCTTCTTCATTTGATTACAATTGGAGTTGGAGATGGGTCATCCTCGTTTCCATTCTTGTTCGCAAATTCATCTCTTTCTTTGCTATTCCTATCTACTGGACTGGCTTCTTTCTTGATTTTTTCCTCAATCTTCTTTCCCTTAACGGTGCTTCCTTCTTTGCTCTTCTCAACAACTTCATACATGGAAGAGTGGTCATACCCGACAGGGGTTCTCAATCTTTTGTAAGTACAATTGGTCACTTAGATGCCAGGCTTGATCTTCAAACCACAAATGGAGATGAAGCCTTCCAACCACAAATGGGCAACCGTGCTTTAATGGATCTCTGCATTATGTCTTCCAAGATAGCATATGAGAACCCTAAACTCATCAAAAATGTCGTCAACCACCATTGGAACATGCACTTTGTAGATTTCTATGATTGCTGGAATGATTTCGAGAAACAGATGTCCACTCAAGTCTTCATCCTATGTGACAAGTTCAAAGATGCAAATTTGGTATTAGTCAGCTTTAGGGGCACTGAACCTTTTGATGCTCATGACTGGTCTACTGATTTTGATTATTCCTGGTATCAAATCCCAAATGTCGGAAAAATCCACATCGGCTTCCTAGAAGCCCTTGGTCTGGGAAATAGAAATCAACCCACCACCTTCTACTCTAATCTCCAACGGAAAGCCAACTCTACAAATGCTGCTAATCTTGGACCTAATCACTCTTCAAAAACCAACTCTGGCACATTGTTCTCAGGCACCGACTCTGACGAGGATCAACCTTTTGTGCCTGAGAAGACACCAGCGGAGAAAACCGCATATGACATTGTGAGAAGCAAACTCAGAAGCTTATTAGAGAAGCATAAGGATGCAAAATTCATAGTTACTGGCCATAGCTTGGGGGGAGCCCTGGCCATATTGTTTCCAACAGTACTTGTGGTGCATGAGGAGATGGAGATAATGGATAGACTGCTTGGTGTATACACATTTGGCCAACCTAGGATTGGGAATAGGCAGCTTGGGAGATTCATGGAACCTCATTTGGATCGCCCTGTTCCAAAGTACTTCAGGGTGGTTTATTGCAATGATATTGTCCCCAGGTTGCCTTATGATGACAAAACCTTCTTGTACAAACATTTTGGACAGTGTCTTTACTACAACAGCCACTACATTGAAAAAAATGTGAAGGAGGAACCGAACAGAAATTTCTTCGGAATGAGATTCATATTATCACAACATTTGAATGCTGTTTGGGAGTTAGTTCGAGGCTTGACAATGGGTTACGTTGAAGGAGCAGAGTATAAGGAAGGGTGGTTTCGCATACTGGTAAGAATAATAGGACTGGCACTTCCTGGTTTTTCGGCTCATTGTCCCACAGATTATGTCAACTCTATCAGACTTGGGAAGGAAAGCTCCATTCACATGTCTTCTATCTAA
Protein sequence

>MsG0780041826.01.T01

MDTELRYLIVRPEKGGFVELFRYAFLGRDFHRFVDDDLVSSSFDYNWSWRWVILVSILVRKFISFFAIPIYWTGFFLDFFLNLLSLNGASFFALLNNFIHGRVVIPDRGSQSFVSTIGHLDARLDLQTTNGDEAFQPQMGNRALMDLCIMSSKIAYENPKLIKNVVNHHWNMHFVDFYDCWNDFEKQMSTQVFILCDKFKDANLVLVSFRGTEPFDAHDWSTDFDYSWYQIPNVGKIHIGFLEALGLGNRNQPTTFYSNLQRKANSTNAANLGPNHSSKTNSGTLFSGTDSDEDQPFVPEKTPAEKTAYDIVRSKLRSLLEKHKDAKFIVTGHSLGGALAILFPTVLVVHEEMEIMDRLLGVYTFGQPRIGNRQLGRFMEPHLDRPVPKYFRVVYCNDIVPRLPYDDKTFLYKHFGQCLYYNSHYIEKNVKEEPNRNFFGMRFILSQHLNAVWELVRGLTMGYVEGAEYKEGWFRILVRIIGLALPGFSAHCPTDYVNSIRLGKESSIHMSSI*