AlfalfaGEDB | MsG0880041963.01

M. sativa cultivar ZhongmuNo.1 / MsG0880041963.01

KEGG: K11340
GO: -
PFAM: PF00022

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880041963.01.T01	XP_012567231.1	50.413	121	12	2	11	129	1	75	1.45E-23	99.4

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880041963.01.T01	Q84M92	41.221	131	27	2	10	138	323	405	1.47E-20	90.5

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880041963.01.T01	A0A2P5BS08	45.963	161	11	3	3	162	413	498	1.41e-24	109

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0480022842.01	MsG0880041963.01	0.801863	7.364677e-49	3.555314e-46
MsG0880041963.01	MsG0880046101.01	0.806874	6.655841e-50	3.653261e-47

Showing 1 to 2 of 2 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880041963.01.T01	MTR_5g066400	47.328	131	19	2	10	138	299	381	5.06e-26	102
MsG0880041963.01.T01	MTR_8g464900	47.328	131	19	2	10	138	326	408	5.84e-26	102
MsG0880041963.01.T01	MTR_5g066400	47.328	131	19	2	10	138	327	409	5.92e-26	102
MsG0880041963.01.T01	MTR_5g066400	54.630	108	1	1	10	117	327	386	6.61e-25	99.4
MsG0880041963.01.T01	MTR_8g007440	50.442	113	8	1	10	122	209	273	3.02e-23	92.8

Showing 1 to 5 of 5 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880041963.01.T01	AT1G18450	41.221	131	27	2	10	138	323	405	1.50e-21	90.5

Showing 1 to 1 of 1 entries

Previous1Next

Find 59 sgRNAs with CRISPR-Local

Find 470 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCGCTCCATCAGTTCGT+GGG	0.616076	8:-1846157	MsG0880041963.01.T01:CDS
AATACGCCCTGGAGAGTTTC+AGG	0.253290	8:-1849416	MsG0880041963.01.T01:five_prime_UTR
AATTGCAGTCAATTCGGGCA+TGG	0.611621	8:-1846192	MsG0880041963.01.T01:intron
ACAGAAGGAACAGAGATTAA+AGG	0.350087	8:+1845720	None:intergenic
ACATCGTATGAGCTACCTGA+TGG	0.659142	8:-1847607	MsG0880041963.01.T01:five_prime_UTR
ACATTTGTTGGAAGGAACCA+AGG	0.602188	8:+1842647	None:intergenic
AGAATTATTTAGTAGCATAC+TGG	0.414090	8:-1845761	MsG0880041963.01.T01:CDS
AGATTGCTTGATGAAAAGCC+TGG	0.504029	8:-1849578	MsG0880041963.01.T01:five_prime_UTR
AGGAGAAAGGAAATACGCCC+TGG	0.526266	8:-1849427	MsG0880041963.01.T01:five_prime_UTR
AGTTCGTGGGCTGCCTCAAA+TGG	0.472905	8:-1846144	MsG0880041963.01.T01:intron

Showing 1 to 10 of 59 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATATCACTTCAACATGTG+TGG	-	Chr8:1845259-1845278	MsG0880041963.01.T01:CDS	30.0%
AAATCTCAATTTGACAACCA+TGG	+	Chr8:1845582-1845601	None:intergenic	30.0%
AAATTCTATTGGAGTTGAGA+GGG	+	Chr8:1844584-1844603	None:intergenic	30.0%
AAATTTGGAGATATTGTGGA+TGG	-	Chr8:1846754-1846773	MsG0880041963.01.T01:intron	30.0%
ACAATGGATAAGTGAACAAA+GGG	+	Chr8:1844034-1844053	None:intergenic	30.0%
ACAGTCATGTATTATCAGAT+TGG	-	Chr8:1845545-1845564	MsG0880041963.01.T01:intron	30.0%
ACATACTATTCGATACAACA+TGG	+	Chr8:1846958-1846977	None:intergenic	30.0%
ACATTAAATGAGATGAGAAC+AGG	+	Chr8:1844339-1844358	None:intergenic	30.0%
ACCAGACAACAAAATCTAAA+TGG	+	Chr8:1849374-1849393	None:intergenic	30.0%
ACCATATGATGTACATATAC+AGG	-	Chr8:1846916-1846935	MsG0880041963.01.T01:intron	30.0%

Showing 1 to 10 of 470 entries

Previous1 2 3 4 5…47Next

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	1842617	1849674	1842617	ID=MsG0880041963.01;Name=MsG0880041963.01
Chr8	mRNA	1842617	1849674	1842617	ID=MsG0880041963.01.T01;Parent=MsG0880041963.01;Name=MsG0880041963.01.T01;_AED=0.57;_eAED=0.58;_QI=339\|0.37\|0.22\|0.88\|0.25\|0.33\|9\|0\|167
Chr8	exon	1849561	1849674	1849561	ID=MsG0880041963.01.T01:exon:1196;Parent=MsG0880041963.01.T01
Chr8	exon	1849388	1849470	1849388	ID=MsG0880041963.01.T01:exon:1195;Parent=MsG0880041963.01.T01
Chr8	exon	1847604	1847654	1847604	ID=MsG0880041963.01.T01:exon:1194;Parent=MsG0880041963.01.T01
Chr8	exon	1847310	1847419	1847310	ID=MsG0880041963.01.T01:exon:1193;Parent=MsG0880041963.01.T01
Chr8	exon	1846145	1846206	1846145	ID=MsG0880041963.01.T01:exon:1192;Parent=MsG0880041963.01.T01
Chr8	exon	1845667	1845824	1845667	ID=MsG0880041963.01.T01:exon:1191;Parent=MsG0880041963.01.T01
Chr8	exon	1845184	1845295	1845184	ID=MsG0880041963.01.T01:exon:1190;Parent=MsG0880041963.01.T01
Chr8	exon	1844981	1845050	1844981	ID=MsG0880041963.01.T01:exon:1189;Parent=MsG0880041963.01.T01
Chr8	exon	1842617	1842699	1842617	ID=MsG0880041963.01.T01:exon:1188;Parent=MsG0880041963.01.T01
Chr8	five_prime_UTR	1849561	1849674	1849561	ID=MsG0880041963.01.T01:five_prime_utr;Parent=MsG0880041963.01.T01
Chr8	five_prime_UTR	1849388	1849470	1849388	ID=MsG0880041963.01.T01:five_prime_utr;Parent=MsG0880041963.01.T01
Chr8	five_prime_UTR	1847604	1847654	1847604	ID=MsG0880041963.01.T01:five_prime_utr;Parent=MsG0880041963.01.T01
Chr8	five_prime_UTR	1847329	1847419	1847329	ID=MsG0880041963.01.T01:five_prime_utr;Parent=MsG0880041963.01.T01
Chr8	CDS	1847310	1847328	1847310	ID=MsG0880041963.01.T01:cds;Parent=MsG0880041963.01.T01
Chr8	CDS	1846145	1846206	1846145	ID=MsG0880041963.01.T01:cds;Parent=MsG0880041963.01.T01
Chr8	CDS	1845667	1845824	1845667	ID=MsG0880041963.01.T01:cds;Parent=MsG0880041963.01.T01
Chr8	CDS	1845184	1845295	1845184	ID=MsG0880041963.01.T01:cds;Parent=MsG0880041963.01.T01
Chr8	CDS	1844981	1845050	1844981	ID=MsG0880041963.01.T01:cds;Parent=MsG0880041963.01.T01
Chr8	CDS	1842617	1842699	1842617	ID=MsG0880041963.01.T01:cds;Parent=MsG0880041963.01.T01

Gene Sequence

>MsG0880041963.01.T01

ATGGTGCATTTTCTTTTTATCAATTCGGGCATGGAGAGCTTTGCAGAAATCGCTCCATCAGTTCGTGGGCTGCCTCAAATGGTTATCGAAAGCATTAATAAGTGTGATGTAGACATTCGAAGAGAATTATTTAGTAGCATACTGGTAATGTTATTTTTTGTTTCCTTTAATCTCTGTTCCTTCTGTACATATACTCTACCCAGTTTCTATGTAGAGCGTAATTATAAAATTAGCACGGAAGTCAGTCATTTACCTGTGCGTTTAAAGTTGATTGCATTTCACTTTCAGCTTGCTGGTGGTACGGCTTCAATGCAACAACTGAAGGAACGCCTTGAGAAAGACTTGCTAGAGGTGGTGATTTCAAAGGTTAACATTTTTTCAAATGGTTTTTCTGTGCGTCTGAGTTATAGCATTGTAACTTTGTCTGGATTGGAGGCAGTATATTGGCTTCCCTTGGTTCCTTCCAACAAATGTGGTTCTCCAAATCCGAGTAATTTACCTTGA

Protein sequence

>MsG0880041963.01.T01

MVHFLFINSGMESFAEIAPSVRGLPQMVIESINKCDVDIRRELFSSILVMLFFVSFNLCSFCTYTLPSFYVERNYKISTEVSHLPVRLKLIAFHFQLAGGTASMQQLKERLEKDLLEVVISKVNIFSNGFSVRLSYSIVTLSGLEAVYWLPLVPSNKCGSPNPSNLP*