Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042252.01.T01 | XP_039685407.1 | 96.978 | 364 | 11 | 0 | 2 | 365 | 38 | 401 | 0 | 726 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042252.01.T01 | Q9SJ74 | 70.3 | 367 | 104 | 4 | 2 | 365 | 40 | 404 | 0 | 517 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042252.01.T01 | A0A072TKQ9 | 96.978 | 364 | 11 | 0 | 2 | 365 | 38 | 401 | 0.0 | 726 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0880042252.01 | MsG0280007481.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042252.01.T01 | MTR_8g009880 | 96.978 | 364 | 11 | 0 | 2 | 365 | 38 | 401 | 0.0 | 726 |
| MsG0880042252.01.T01 | MTR_5g097620 | 85.831 | 367 | 48 | 3 | 2 | 364 | 75 | 441 | 0.0 | 636 |
| MsG0880042252.01.T01 | MTR_7g051910 | 32.703 | 370 | 224 | 6 | 2 | 364 | 42 | 393 | 2.85e-62 | 204 |
| MsG0880042252.01.T01 | MTR_4g133620 | 33.867 | 375 | 214 | 9 | 2 | 361 | 42 | 397 | 4.09e-62 | 204 |
| MsG0880042252.01.T01 | MTR_2g026080 | 35.598 | 368 | 211 | 10 | 2 | 359 | 46 | 397 | 7.86e-62 | 203 |
| MsG0880042252.01.T01 | MTR_5g093520 | 35.447 | 347 | 202 | 9 | 2 | 338 | 54 | 388 | 6.74e-59 | 196 |
| MsG0880042252.01.T01 | MTR_3g058510 | 29.830 | 352 | 222 | 8 | 2 | 344 | 43 | 378 | 1.93e-52 | 178 |
| MsG0880042252.01.T01 | MTR_8g028075 | 31.858 | 226 | 144 | 7 | 112 | 335 | 336 | 553 | 2.42e-30 | 122 |
| MsG0880042252.01.T01 | MTR_7g117375 | 31.132 | 318 | 184 | 13 | 33 | 341 | 92 | 383 | 4.27e-22 | 97.1 |
| MsG0880042252.01.T01 | MTR_2g018960 | 27.941 | 204 | 134 | 5 | 152 | 349 | 651 | 847 | 3.27e-12 | 68.6 |
| MsG0880042252.01.T01 | MTR_4g096780 | 24.255 | 235 | 154 | 7 | 136 | 360 | 13 | 233 | 2.97e-11 | 63.5 |
| MsG0880042252.01.T01 | MTR_4g096780 | 24.255 | 235 | 154 | 7 | 136 | 360 | 13 | 233 | 9.29e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042252.01.T01 | AT2G04850 | 70.300 | 367 | 104 | 4 | 2 | 365 | 40 | 404 | 0.0 | 517 |
| MsG0880042252.01.T01 | AT3G25290 | 33.894 | 357 | 214 | 5 | 2 | 348 | 45 | 389 | 2.85e-69 | 223 |
| MsG0880042252.01.T01 | AT3G25290 | 33.894 | 357 | 214 | 5 | 2 | 348 | 45 | 389 | 2.85e-69 | 223 |
| MsG0880042252.01.T01 | AT4G12980 | 34.078 | 358 | 212 | 7 | 2 | 348 | 46 | 390 | 5.63e-69 | 222 |
| MsG0880042252.01.T01 | AT5G47530 | 33.051 | 354 | 215 | 7 | 2 | 349 | 44 | 381 | 3.28e-67 | 217 |
| MsG0880042252.01.T01 | AT5G35735 | 33.983 | 359 | 211 | 10 | 11 | 364 | 55 | 392 | 9.42e-64 | 209 |
| MsG0880042252.01.T01 | AT4G17280 | 35.196 | 358 | 208 | 9 | 2 | 351 | 51 | 392 | 5.84e-61 | 201 |
| MsG0880042252.01.T01 | AT3G59070 | 30.423 | 355 | 217 | 11 | 20 | 360 | 72 | 410 | 4.84e-48 | 169 |
| MsG0880042252.01.T01 | AT3G07570 | 28.986 | 345 | 199 | 12 | 6 | 332 | 47 | 363 | 3.82e-31 | 121 |
| MsG0880042252.01.T01 | AT5G48750 | 31.336 | 217 | 127 | 5 | 2 | 212 | 51 | 251 | 8.63e-28 | 110 |
| MsG0880042252.01.T01 | AT3G61750 | 28.383 | 303 | 195 | 10 | 32 | 332 | 11 | 293 | 2.17e-26 | 107 |
| MsG0880042252.01.T01 | AT3G61750 | 28.383 | 303 | 195 | 10 | 32 | 332 | 88 | 370 | 5.24e-26 | 108 |
| MsG0880042252.01.T01 | AT5G54830 | 29.412 | 187 | 111 | 6 | 159 | 339 | 670 | 841 | 8.15e-14 | 73.6 |
| MsG0880042252.01.T01 | AT4G18260 | 27.072 | 181 | 119 | 4 | 177 | 353 | 63 | 234 | 7.86e-11 | 62.8 |
Find 137 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTGTTTGCTTTCATTCT+TGG | 0.155320 | 8:-6041883 | MsG0880042252.01.T01:CDS |
| ATTCCAAACAAGGTGGATTT+TGG | 0.189165 | 8:+6042164 | None:intergenic |
| GTTTGATTCTAGTTTGAATT+TGG | 0.197666 | 8:+6042191 | None:intergenic |
| GGTACCTTCATTTCACCTTC+TGG | 0.249020 | 8:-6042459 | MsG0880042252.01.T01:CDS |
| AGACTTTAGCATTGTTGTTT+AGG | 0.279742 | 8:-6041753 | MsG0880042252.01.T01:CDS |
| TGTAAGGAAGTAGGACTATT+TGG | 0.291449 | 8:+6042352 | None:intergenic |
| AAACCAAAATCCACCTTGTT+TGG | 0.304424 | 8:-6042167 | MsG0880042252.01.T01:CDS |
| GATTGGTGTTTCCATAGCTT+TGG | 0.318729 | 8:-6041566 | MsG0880042252.01.T01:CDS |
| CACCTTCTGGATGGGTTGGA+TGG | 0.322109 | 8:-6042446 | MsG0880042252.01.T01:CDS |
| TCTTCCACGGCAGCCATATA+TGG | 0.336668 | 8:-6042261 | MsG0880042252.01.T01:CDS |
| CGATAACTGCACGTTACTTT+AGG | 0.338646 | 8:-6041954 | MsG0880042252.01.T01:CDS |
| GTTTGAATTTGGCATAGATT+TGG | 0.341934 | 8:+6042202 | None:intergenic |
| CTGAACTTATTTCTAGCGTT+TGG | 0.345046 | 8:+6041730 | None:intergenic |
| TCGCCTTGGGCAATTGTCTC+CGG | 0.350586 | 8:-6041836 | MsG0880042252.01.T01:CDS |
| AGGCTTGTTGGGTGGGAAGC+AGG | 0.351279 | 8:+6042535 | None:intergenic |
| TTCGCCATTGGCATTCGCCT+TGG | 0.354937 | 8:-6041850 | MsG0880042252.01.T01:CDS |
| TGCCAAGTTGAGTTACTGTT+TGG | 0.356516 | 8:-6041602 | MsG0880042252.01.T01:CDS |
| GCTTTCATTCTTGGAACTGT+GGG | 0.358819 | 8:-6041874 | MsG0880042252.01.T01:CDS |
| ACCTTCTGGATGGGTTGGAT+GGG | 0.360379 | 8:-6042445 | MsG0880042252.01.T01:CDS |
| AATCCTACCACCACGTTGTT+GGG | 0.365830 | 8:-6041696 | MsG0880042252.01.T01:CDS |
| GGAGCTTTACATTCGGGTCT+AGG | 0.366805 | 8:+6042328 | None:intergenic |
| TCGCCATTGGCATTCGCCTT+GGG | 0.378753 | 8:-6041849 | MsG0880042252.01.T01:CDS |
| TTGGGACTTTCTACTCTGAT+TGG | 0.385534 | 8:-6041583 | MsG0880042252.01.T01:CDS |
| ACCAAAGAAAACTAGCTCTA+AGG | 0.390042 | 8:+6042479 | None:intergenic |
| GGCTTGTTGGGTGGGAAGCA+GGG | 0.392589 | 8:+6042536 | None:intergenic |
| CAGCCATATATGGTGGCAAA+AGG | 0.396799 | 8:-6042251 | MsG0880042252.01.T01:CDS |
| GCCACCTTGGACGTGTTGTC+AGG | 0.406139 | 8:-6042072 | MsG0880042252.01.T01:CDS |
| ATTTCACCTTCTGGATGGGT+TGG | 0.418948 | 8:-6042450 | MsG0880042252.01.T01:CDS |
| GGGTACTCTTGTGTGGTGCT+CGG | 0.419514 | 8:-6041676 | MsG0880042252.01.T01:CDS |
| TCCATGCTATAGAGGCTTGT+TGG | 0.422158 | 8:+6042523 | None:intergenic |
| CTGTCATCTCTGATGAAGTT+GGG | 0.422368 | 8:+6042415 | None:intergenic |
| TTTCAAGGGTTTGAAGTGAT+GGG | 0.426534 | 8:-6041640 | MsG0880042252.01.T01:CDS |
| GGTACTCTTGTGTGGTGCTC+GGG | 0.429304 | 8:-6041675 | MsG0880042252.01.T01:CDS |
| CCTTCATTTCACCTTCTGGA+TGG | 0.431658 | 8:-6042455 | MsG0880042252.01.T01:CDS |
| TAGCTTTGGAGGTGATCTCT+TGG | 0.432585 | 8:-6041552 | MsG0880042252.01.T01:CDS |
| AATCGAGGACTTTATGTTCA+AGG | 0.432833 | 8:-6042144 | MsG0880042252.01.T01:CDS |
| GGGTTTGTGAATGTGTTTCA+AGG | 0.433084 | 8:-6041655 | MsG0880042252.01.T01:CDS |
| CCTTCTGGATGGGTTGGATG+GGG | 0.433473 | 8:-6042444 | MsG0880042252.01.T01:CDS |
| GCCAAGTTGAGTTACTGTTT+GGG | 0.436526 | 8:-6041601 | MsG0880042252.01.T01:CDS |
| CCATGCTATAGAGGCTTGTT+GGG | 0.439886 | 8:+6042524 | None:intergenic |
| CTTCATTTCACCTTCTGGAT+GGG | 0.441709 | 8:-6042454 | MsG0880042252.01.T01:CDS |
| TCTCTCTTCCATTGCCACCT+TGG | 0.442566 | 8:-6042085 | MsG0880042252.01.T01:CDS |
| AGCTTTGGAGGTGATCTCTT+GGG | 0.443793 | 8:-6041551 | MsG0880042252.01.T01:CDS |
| GGAACTGTGGGGTTCGCCAT+TGG | 0.448882 | 8:-6041862 | MsG0880042252.01.T01:CDS |
| CCTGTCATCTCTGATGAAGT+TGG | 0.450868 | 8:+6042414 | None:intergenic |
| CGCCTTGGGCAATTGTCTCC+GGG | 0.452078 | 8:-6041835 | MsG0880042252.01.T01:CDS |
| AAATCCTACCACCACGTTGT+TGG | 0.452781 | 8:-6041697 | MsG0880042252.01.T01:CDS |
| GCCCCATGAGATGGCATTCA+AGG | 0.453359 | 8:+6041996 | None:intergenic |
| GAAATAAGTTCAGGAAGTAT+TGG | 0.458818 | 8:-6041720 | MsG0880042252.01.T01:CDS |
| GTTTCAAGGGTTTGAAGTGA+TGG | 0.464273 | 8:-6041641 | MsG0880042252.01.T01:CDS |
| AGCTCTAAGGTGGAGTTATG+AGG | 0.466832 | 8:+6042492 | None:intergenic |
| ACATTCGGGTCTAGGATGTA+AGG | 0.470433 | 8:+6042336 | None:intergenic |
| GCCTGAGGTTGGATCAGAAA+AGG | 0.471085 | 8:+6042374 | None:intergenic |
| TGGGCAATTGTCTCCGGGAG+TGG | 0.471226 | 8:-6041830 | MsG0880042252.01.T01:CDS |
| TATAGCCTCCACAGGAAGCT+TGG | 0.472577 | 8:-6041805 | MsG0880042252.01.T01:CDS |
| GAGAGATCAGTGGAGGTGGT+TGG | 0.473365 | 8:+6042102 | None:intergenic |
| AAGAGAAAATGAAGAGAGAA+GGG | 0.480160 | 8:-6041504 | MsG0880042252.01.T01:CDS |
| GCTATAGAGGCTTGTTGGGT+GGG | 0.484183 | 8:+6042528 | None:intergenic |
| GAATCACTCTCAGCATTGTA+AGG | 0.486103 | 8:+6042025 | None:intergenic |
| GAATTTGGCATAGATTTGGA+TGG | 0.486860 | 8:+6042206 | None:intergenic |
| TGCTTTCATTCTTGGAACTG+TGG | 0.487236 | 8:-6041875 | MsG0880042252.01.T01:CDS |
| ACAATGCTGAGAGTGATTCA+TGG | 0.487336 | 8:-6042021 | MsG0880042252.01.T01:CDS |
| TTCAAGGGTTTGAAGTGATG+GGG | 0.499384 | 8:-6041639 | MsG0880042252.01.T01:CDS |
| GAAGAGAAAATGAAGAGAGA+AGG | 0.500835 | 8:-6041505 | MsG0880042252.01.T01:CDS |
| TGGTGTTTCCATAGCTTTGG+AGG | 0.501209 | 8:-6041563 | MsG0880042252.01.T01:CDS |
| CAACTTGGCATAGGATCTGC+TGG | 0.504353 | 8:+6041615 | None:intergenic |
| AGGACTATTTGGCCTGAGGT+TGG | 0.507351 | 8:+6042363 | None:intergenic |
| GCTTGTTGGGTGGGAAGCAG+GGG | 0.508074 | 8:+6042537 | None:intergenic |
| ATGAAGAGAGAAGGGCTTGT+CGG | 0.510822 | 8:-6041496 | MsG0880042252.01.T01:CDS |
| AATTTGGCATAGATTTGGAT+GGG | 0.513427 | 8:+6042207 | None:intergenic |
| TGCTATAGAGGCTTGTTGGG+TGG | 0.514341 | 8:+6042527 | None:intergenic |
| GGTCTAGGATGTAAGGAAGT+AGG | 0.522615 | 8:+6042343 | None:intergenic |
| TGGGGCATTCTCTTACCAAT+GGG | 0.524010 | 8:-6041979 | MsG0880042252.01.T01:CDS |
| TACCTTGAATGCCATCTCAT+GGG | 0.527370 | 8:-6041998 | MsG0880042252.01.T01:CDS |
| ATGGGGCATTCTCTTACCAA+TGG | 0.530728 | 8:-6041980 | MsG0880042252.01.T01:CDS |
| AGAGATCACCTCCAAAGCTA+TGG | 0.533526 | 8:+6041555 | None:intergenic |
| CAAACGCTAGAAATAAGTTC+AGG | 0.536085 | 8:-6041729 | MsG0880042252.01.T01:CDS |
| CTAAAGTCTGCAAGGCTCCA+AGG | 0.539524 | 8:+6041767 | None:intergenic |
| GTACCTTGAATGCCATCTCA+TGG | 0.539635 | 8:-6041999 | MsG0880042252.01.T01:CDS |
| GAGGTGGTTGGATGAATAGT+AGG | 0.540410 | 8:+6042114 | None:intergenic |
| GGTTTGTGAATGTGTTTCAA+GGG | 0.541986 | 8:-6041654 | MsG0880042252.01.T01:CDS |
| ATCCACCTTGTTTGGAATCG+AGG | 0.543575 | 8:-6042159 | MsG0880042252.01.T01:CDS |
| GTGTGGTTCTATGCTCATGC+AGG | 0.551483 | 8:-6041910 | MsG0880042252.01.T01:CDS |
| CAACACGTCCAAGGTGGCAA+TGG | 0.551704 | 8:+6042077 | None:intergenic |
| CATTCACCTTATCTCTTCCA+CGG | 0.554140 | 8:-6042274 | MsG0880042252.01.T01:CDS |
| GTGGAAAGTCCATGCTATAG+AGG | 0.558385 | 8:+6042515 | None:intergenic |
| TTGTCGGAACTTCTGACAAA+GGG | 0.559180 | 8:-6041480 | MsG0880042252.01.T01:CDS |
| CCATCCAGAAGGTGAAATGA+AGG | 0.559313 | 8:+6042455 | None:intergenic |
| AGCCATATATGGTGGCAAAA+GGG | 0.560598 | 8:-6042250 | MsG0880042252.01.T01:CDS |
| TCCCAAACAGTAACTCAACT+TGG | 0.566330 | 8:+6041600 | None:intergenic |
| CAAGGCTCCAAGGCAAAACA+CGG | 0.566886 | 8:+6041777 | None:intergenic |
| TTGCCCAAGGCGAATGCCAA+TGG | 0.566998 | 8:+6041846 | None:intergenic |
| CAACAATGCTAAAGTCTGCA+AGG | 0.567757 | 8:+6041759 | None:intergenic |
| TTTAGGCATATTCAATCACT+AGG | 0.571060 | 8:-6041937 | MsG0880042252.01.T01:CDS |
| CGTGCAGTTATCGCTCCCAT+TGG | 0.571568 | 8:+6041964 | None:intergenic |
| TAAGAGAATGCCCCATGAGA+TGG | 0.571642 | 8:+6041987 | None:intergenic |
| GGAAGAGAGATCAGTGGAGG+TGG | 0.571664 | 8:+6042098 | None:intergenic |
| CGATTCCAAGCTTCCTGTGG+AGG | 0.572777 | 8:+6041800 | None:intergenic |
| CTTTCATTCTTGGAACTGTG+GGG | 0.574407 | 8:-6041873 | MsG0880042252.01.T01:CDS |
| TGGCTGCCGTGGAAGAGATA+AGG | 0.578439 | 8:+6042268 | None:intergenic |
| GAGTGGAGTATAGCCTCCAC+AGG | 0.579131 | 8:-6041813 | MsG0880042252.01.T01:CDS |
| GCTCTAAGGTGGAGTTATGA+GGG | 0.582609 | 8:+6042493 | None:intergenic |
| TGGAGGCTATACTCCACTCC+CGG | 0.582648 | 8:+6041817 | None:intergenic |
| AAAGTCCTCGATTCCAAACA+AGG | 0.585689 | 8:+6042154 | None:intergenic |
| TATGTATTCTCTTTCAAGTG+TGG | 0.586082 | 8:+6041446 | None:intergenic |
| CCCAACAAGCCTCTATAGCA+TGG | 0.588511 | 8:-6042524 | MsG0880042252.01.T01:CDS |
| ATTTGGCATAGATTTGGATG+GGG | 0.589019 | 8:+6042208 | None:intergenic |
| AAAGAAAACTAGCTCTAAGG+TGG | 0.596655 | 8:+6042482 | None:intergenic |
| TTTGGCATAGATTTGGATGG+GGG | 0.598707 | 8:+6042209 | None:intergenic |
| TCAAGGGTTTGAAGTGATGG+GGG | 0.598986 | 8:-6041638 | MsG0880042252.01.T01:CDS |
| GCCACCATATATGGCTGCCG+TGG | 0.599928 | 8:+6042257 | None:intergenic |
| CTCCCGGAGACAATTGCCCA+AGG | 0.600974 | 8:+6041833 | None:intergenic |
| ACAGTAACTCAACTTGGCAT+AGG | 0.604048 | 8:+6041606 | None:intergenic |
| TCAAGTGGTCGAGAGAGTAG+TGG | 0.610217 | 8:+6042297 | None:intergenic |
| CGGCGATTCCAAGCTTCCTG+TGG | 0.614274 | 8:+6041797 | None:intergenic |
| ACCTTGAATGCCATCTCATG+GGG | 0.616780 | 8:-6041997 | MsG0880042252.01.T01:CDS |
| CTTGTCGGAACTTCTGACAA+AGG | 0.616883 | 8:-6041481 | MsG0880042252.01.T01:CDS |
| AAGTAGGACTATTTGGCCTG+AGG | 0.624171 | 8:+6042359 | None:intergenic |
| TGAACCTGACAACACGTCCA+AGG | 0.624862 | 8:+6042068 | None:intergenic |
| CCCCATCCAACCCATCCAGA+AGG | 0.626283 | 8:+6042444 | None:intergenic |
| CCAACTTCATCAGAGATGAC+AGG | 0.626824 | 8:-6042414 | MsG0880042252.01.T01:CDS |
| CTAAGGTGGAGTTATGAGGG+TGG | 0.628304 | 8:+6042496 | None:intergenic |
| GGCAATGGAAGAGAGATCAG+TGG | 0.632564 | 8:+6042092 | None:intergenic |
| ACTTCTGACAAAGGGAGTAG+TGG | 0.632759 | 8:-6041472 | MsG0880042252.01.T01:CDS |
| GTACCCAACAACGTGGTGGT+AGG | 0.637331 | 8:+6041693 | None:intergenic |
| TCCACGGCAGCCATATATGG+TGG | 0.654541 | 8:-6042258 | MsG0880042252.01.T01:CDS |
| CGTTGTTGGGTACTCTTGTG+TGG | 0.654567 | 8:-6041683 | MsG0880042252.01.T01:CDS |
| GAGATAAGGTGAATGTCAAG+TGG | 0.666609 | 8:+6042282 | None:intergenic |
| TTCAATCACTAGGTCCTGTG+TGG | 0.671490 | 8:-6041927 | MsG0880042252.01.T01:CDS |
| AATGGAAGAGAGATCAGTGG+AGG | 0.692402 | 8:+6042095 | None:intergenic |
| AAAAGGGCCACCATACACAA+TGG | 0.694761 | 8:-6042234 | MsG0880042252.01.T01:CDS |
| AAGGTCTGTGTGTTGACGAG+CGG | 0.701086 | 8:+6042044 | None:intergenic |
| GTCCTCGATTCCAAACAAGG+TGG | 0.704268 | 8:+6042157 | None:intergenic |
| GCATGAGCATAGAACCACAC+AGG | 0.706499 | 8:+6041913 | None:intergenic |
| ACCTGACAACACGTCCAAGG+TGG | 0.719059 | 8:+6042071 | None:intergenic |
| AAGAGTACCCAACAACGTGG+TGG | 0.723905 | 8:+6041689 | None:intergenic |
| CACAAGAGTACCCAACAACG+TGG | 0.730225 | 8:+6041686 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTGATTCTAGTTTGAATT+TGG | + | Chr8:6041805-6041824 | None:intergenic | 25.0% |
| AAGAGAAAATGAAGAGAGAA+GGG | - | Chr8:6042489-6042508 | MsG0880042252.01.T01:CDS | 30.0% | |
| AATTTGGCATAGATTTGGAT+GGG | + | Chr8:6041789-6041808 | None:intergenic | 30.0% | |
| CAATTGTTTGCTTTCATTCT+TGG | - | Chr8:6042110-6042129 | MsG0880042252.01.T01:CDS | 30.0% | |
| GTTTGAATTTGGCATAGATT+TGG | + | Chr8:6041794-6041813 | None:intergenic | 30.0% | |
| TTTAGGCATATTCAATCACT+AGG | - | Chr8:6042056-6042075 | MsG0880042252.01.T01:CDS | 30.0% | |
| ! | GAAATAAGTTCAGGAAGTAT+TGG | - | Chr8:6042273-6042292 | MsG0880042252.01.T01:CDS | 30.0% |
| ! | GATTTTCTGTAGGAAATCTA+AGG | - | Chr8:6042466-6042485 | MsG0880042252.01.T01:CDS | 30.0% |
| !! | AGACTTTAGCATTGTTGTTT+AGG | - | Chr8:6042240-6042259 | MsG0880042252.01.T01:CDS | 30.0% |
| !!! | ATTTTTGGAGCTTTACATTC+GGG | + | Chr8:6041674-6041693 | None:intergenic | 30.0% |
| !!! | GATTTTTGGAGCTTTACATT+CGG | + | Chr8:6041675-6041694 | None:intergenic | 30.0% |
| AAACCAAAATCCACCTTGTT+TGG | - | Chr8:6041826-6041845 | MsG0880042252.01.T01:CDS | 35.0% | |
| AATCGAGGACTTTATGTTCA+AGG | - | Chr8:6041849-6041868 | MsG0880042252.01.T01:CDS | 35.0% | |
| ATTTGGCATAGATTTGGATG+GGG | + | Chr8:6041788-6041807 | None:intergenic | 35.0% | |
| CAAACGCTAGAAATAAGTTC+AGG | - | Chr8:6042264-6042283 | MsG0880042252.01.T01:CDS | 35.0% | |
| GAAGAGAAAATGAAGAGAGA+AGG | - | Chr8:6042488-6042507 | MsG0880042252.01.T01:CDS | 35.0% | |
| GAATTTGGCATAGATTTGGA+TGG | + | Chr8:6041790-6041809 | None:intergenic | 35.0% | |
| GGTTTGTGAATGTGTTTCAA+GGG | - | Chr8:6042339-6042358 | MsG0880042252.01.T01:CDS | 35.0% | |
| TGTAAGGAAGTAGGACTATT+TGG | + | Chr8:6041644-6041663 | None:intergenic | 35.0% | |
| ! | TTTCAAGGGTTTGAAGTGAT+GGG | - | Chr8:6042353-6042372 | MsG0880042252.01.T01:CDS | 35.0% |
| !! | AAAGAAAACTAGCTCTAAGG+TGG | + | Chr8:6041514-6041533 | None:intergenic | 35.0% |
| !! | ACCAAAGAAAACTAGCTCTA+AGG | + | Chr8:6041517-6041536 | None:intergenic | 35.0% |
| !! | ATTCCAAACAAGGTGGATTT+TGG | + | Chr8:6041832-6041851 | None:intergenic | 35.0% |
| !! | CTGAACTTATTTCTAGCGTT+TGG | + | Chr8:6042266-6042285 | None:intergenic | 35.0% |
| !!! | ACCTTAGAGCTAGTTTTCTT+TGG | - | Chr8:6041513-6041532 | MsG0880042252.01.T01:CDS | 35.0% |
| AAAGTCCTCGATTCCAAACA+AGG | + | Chr8:6041842-6041861 | None:intergenic | 40.0% | |
| ACAATGCTGAGAGTGATTCA+TGG | - | Chr8:6041972-6041991 | MsG0880042252.01.T01:CDS | 40.0% | |
| ACAGTAACTCAACTTGGCAT+AGG | + | Chr8:6042390-6042409 | None:intergenic | 40.0% | |
| AGCCATATATGGTGGCAAAA+GGG | - | Chr8:6041743-6041762 | MsG0880042252.01.T01:CDS | 40.0% | |
| CAACAATGCTAAAGTCTGCA+AGG | + | Chr8:6042237-6042256 | None:intergenic | 40.0% | |
| CATTCACCTTATCTCTTCCA+CGG | - | Chr8:6041719-6041738 | MsG0880042252.01.T01:CDS | 40.0% | |
| CTGTCATCTCTGATGAAGTT+GGG | + | Chr8:6041581-6041600 | None:intergenic | 40.0% | |
| CTTCATTTCACCTTCTGGAT+GGG | - | Chr8:6041539-6041558 | MsG0880042252.01.T01:CDS | 40.0% | |
| CTTTCATTCTTGGAACTGTG+GGG | - | Chr8:6042120-6042139 | MsG0880042252.01.T01:CDS | 40.0% | |
| GAATCACTCTCAGCATTGTA+AGG | + | Chr8:6041971-6041990 | None:intergenic | 40.0% | |
| GAGATAAGGTGAATGTCAAG+TGG | + | Chr8:6041714-6041733 | None:intergenic | 40.0% | |
| GCTTTCATTCTTGGAACTGT+GGG | - | Chr8:6042119-6042138 | MsG0880042252.01.T01:CDS | 40.0% | |
| GGGTTTGTGAATGTGTTTCA+AGG | - | Chr8:6042338-6042357 | MsG0880042252.01.T01:CDS | 40.0% | |
| TACCTTGAATGCCATCTCAT+GGG | - | Chr8:6041995-6042014 | MsG0880042252.01.T01:CDS | 40.0% | |
| TCCCAAACAGTAACTCAACT+TGG | + | Chr8:6042396-6042415 | None:intergenic | 40.0% | |
| TGCTTTCATTCTTGGAACTG+TGG | - | Chr8:6042118-6042137 | MsG0880042252.01.T01:CDS | 40.0% | |
| TTGGGACTTTCTACTCTGAT+TGG | - | Chr8:6042410-6042429 | MsG0880042252.01.T01:CDS | 40.0% | |
| TTGTCGGAACTTCTGACAAA+GGG | - | Chr8:6042513-6042532 | MsG0880042252.01.T01:CDS | 40.0% | |
| TTTGGCATAGATTTGGATGG+GGG | + | Chr8:6041787-6041806 | None:intergenic | 40.0% | |
| ! | CGATAACTGCACGTTACTTT+AGG | - | Chr8:6042039-6042058 | MsG0880042252.01.T01:CDS | 40.0% |
| ! | GATTGGTGTTTCCATAGCTT+TGG | - | Chr8:6042427-6042446 | MsG0880042252.01.T01:CDS | 40.0% |
| ! | GCCAAGTTGAGTTACTGTTT+GGG | - | Chr8:6042392-6042411 | MsG0880042252.01.T01:CDS | 40.0% |
| ! | GTTTCAAGGGTTTGAAGTGA+TGG | - | Chr8:6042352-6042371 | MsG0880042252.01.T01:CDS | 40.0% |
| ! | TCTCTTGGGTGATTTTCTGT+AGG | - | Chr8:6042456-6042475 | MsG0880042252.01.T01:CDS | 40.0% |
| ! | TGCCAAGTTGAGTTACTGTT+TGG | - | Chr8:6042391-6042410 | MsG0880042252.01.T01:CDS | 40.0% |
| ! | TTCAAGGGTTTGAAGTGATG+GGG | - | Chr8:6042354-6042373 | MsG0880042252.01.T01:CDS | 40.0% |
| !! | GAGAGAGTAGTGGAGATTTT+TGG | + | Chr8:6041689-6041708 | None:intergenic | 40.0% |
| AAAAGGGCCACCATACACAA+TGG | - | Chr8:6041759-6041778 | MsG0880042252.01.T01:CDS | 45.0% | |
| AAATCCTACCACCACGTTGT+TGG | - | Chr8:6042296-6042315 | MsG0880042252.01.T01:CDS | 45.0% | |
| AAGTAGGACTATTTGGCCTG+AGG | + | Chr8:6041637-6041656 | None:intergenic | 45.0% | |
| AATCCTACCACCACGTTGTT+GGG | - | Chr8:6042297-6042316 | MsG0880042252.01.T01:CDS | 45.0% | |
| AATGGAAGAGAGATCAGTGG+AGG | + | Chr8:6041901-6041920 | None:intergenic | 45.0% | |
| ACCTTGAATGCCATCTCATG+GGG | - | Chr8:6041996-6042015 | MsG0880042252.01.T01:CDS | 45.0% | |
| ACTTCTGACAAAGGGAGTAG+TGG | - | Chr8:6042521-6042540 | MsG0880042252.01.T01:CDS | 45.0% | |
| AGAGATCACCTCCAAAGCTA+TGG | + | Chr8:6042441-6042460 | None:intergenic | 45.0% | |
| ATGAAGAGAGAAGGGCTTGT+CGG | - | Chr8:6042497-6042516 | MsG0880042252.01.T01:CDS | 45.0% | |
| ATTTCACCTTCTGGATGGGT+TGG | - | Chr8:6041543-6041562 | MsG0880042252.01.T01:CDS | 45.0% | |
| CAGCCATATATGGTGGCAAA+AGG | - | Chr8:6041742-6041761 | MsG0880042252.01.T01:CDS | 45.0% | |
| CCAACTTCATCAGAGATGAC+AGG | - | Chr8:6041579-6041598 | MsG0880042252.01.T01:CDS | 45.0% | |
| CCATCCAGAAGGTGAAATGA+AGG | + | Chr8:6041541-6041560 | None:intergenic | 45.0% | |
| CCTGTCATCTCTGATGAAGT+TGG | + | Chr8:6041582-6041601 | None:intergenic | 45.0% | |
| CCTTCATTTCACCTTCTGGA+TGG | - | Chr8:6041538-6041557 | MsG0880042252.01.T01:CDS | 45.0% | |
| CTTGTCGGAACTTCTGACAA+AGG | - | Chr8:6042512-6042531 | MsG0880042252.01.T01:CDS | 45.0% | |
| GAGGTGGTTGGATGAATAGT+AGG | + | Chr8:6041882-6041901 | None:intergenic | 45.0% | |
| GGTACCTTCATTTCACCTTC+TGG | - | Chr8:6041534-6041553 | MsG0880042252.01.T01:CDS | 45.0% | |
| GTACCTTGAATGCCATCTCA+TGG | - | Chr8:6041994-6042013 | MsG0880042252.01.T01:CDS | 45.0% | |
| GTGGAAAGTCCATGCTATAG+AGG | + | Chr8:6041481-6041500 | None:intergenic | 45.0% | |
| TAAGAGAATGCCCCATGAGA+TGG | + | Chr8:6042009-6042028 | None:intergenic | 45.0% | |
| TCCATGCTATAGAGGCTTGT+TGG | + | Chr8:6041473-6041492 | None:intergenic | 45.0% | |
| TTCAATCACTAGGTCCTGTG+TGG | - | Chr8:6042066-6042085 | MsG0880042252.01.T01:CDS | 45.0% | |
| ! | ACATTCGGGTCTAGGATGTA+AGG | + | Chr8:6041660-6041679 | None:intergenic | 45.0% |
| ! | ATCCACCTTGTTTGGAATCG+AGG | - | Chr8:6041834-6041853 | MsG0880042252.01.T01:CDS | 45.0% |
| ! | ATGGGGCATTCTCTTACCAA+TGG | - | Chr8:6042013-6042032 | MsG0880042252.01.T01:CDS | 45.0% |
| ! | CCATGCTATAGAGGCTTGTT+GGG | + | Chr8:6041472-6041491 | None:intergenic | 45.0% |
| ! | GGTCTAGGATGTAAGGAAGT+AGG | + | Chr8:6041653-6041672 | None:intergenic | 45.0% |
| ! | TCAAGGGTTTGAAGTGATGG+GGG | - | Chr8:6042355-6042374 | MsG0880042252.01.T01:CDS | 45.0% |
| ! | TGGGGCATTCTCTTACCAAT+GGG | - | Chr8:6042014-6042033 | MsG0880042252.01.T01:CDS | 45.0% |
| !! | AGCTCTAAGGTGGAGTTATG+AGG | + | Chr8:6041504-6041523 | None:intergenic | 45.0% |
| !! | AGCTTTGGAGGTGATCTCTT+GGG | - | Chr8:6042442-6042461 | MsG0880042252.01.T01:CDS | 45.0% |
| !! | GCTCTAAGGTGGAGTTATGA+GGG | + | Chr8:6041503-6041522 | None:intergenic | 45.0% |
| !! | TAGCTTTGGAGGTGATCTCT+TGG | - | Chr8:6042441-6042460 | MsG0880042252.01.T01:CDS | 45.0% |
| !! | TGGTGTTTCCATAGCTTTGG+AGG | - | Chr8:6042430-6042449 | MsG0880042252.01.T01:CDS | 45.0% |
| AGGACTATTTGGCCTGAGGT+TGG | + | Chr8:6041633-6041652 | None:intergenic | 50.0% | |
| CAACTTGGCATAGGATCTGC+TGG | + | Chr8:6042381-6042400 | None:intergenic | 50.0% | |
| CAAGGCTCCAAGGCAAAACA+CGG | + | Chr8:6042219-6042238 | None:intergenic | 50.0% | |
| CCCAACAAGCCTCTATAGCA+TGG | - | Chr8:6041469-6041488 | MsG0880042252.01.T01:CDS | 50.0% | |
| CGTTGTTGGGTACTCTTGTG+TGG | - | Chr8:6042310-6042329 | MsG0880042252.01.T01:CDS | 50.0% | |
| CTAAAGTCTGCAAGGCTCCA+AGG | + | Chr8:6042229-6042248 | None:intergenic | 50.0% | |
| CTAAGGTGGAGTTATGAGGG+TGG | + | Chr8:6041500-6041519 | None:intergenic | 50.0% | |
| GCATGAGCATAGAACCACAC+AGG | + | Chr8:6042083-6042102 | None:intergenic | 50.0% | |
| GCCTGAGGTTGGATCAGAAA+AGG | + | Chr8:6041622-6041641 | None:intergenic | 50.0% | |
| GGAGCTTTACATTCGGGTCT+AGG | + | Chr8:6041668-6041687 | None:intergenic | 50.0% | |
| GGCAATGGAAGAGAGATCAG+TGG | + | Chr8:6041904-6041923 | None:intergenic | 50.0% | |
| GTCCTCGATTCCAAACAAGG+TGG | + | Chr8:6041839-6041858 | None:intergenic | 50.0% | |
| TATAGCCTCCACAGGAAGCT+TGG | - | Chr8:6042188-6042207 | MsG0880042252.01.T01:CDS | 50.0% | |
| TCAAGTGGTCGAGAGAGTAG+TGG | + | Chr8:6041699-6041718 | None:intergenic | 50.0% | |
| TCTCTCTTCCATTGCCACCT+TGG | - | Chr8:6041908-6041927 | MsG0880042252.01.T01:CDS | 50.0% | |
| TCTTCCACGGCAGCCATATA+TGG | - | Chr8:6041732-6041751 | MsG0880042252.01.T01:CDS | 50.0% | |
| TGAACCTGACAACACGTCCA+AGG | + | Chr8:6041928-6041947 | None:intergenic | 50.0% | |
| ! | AAGGTCTGTGTGTTGACGAG+CGG | + | Chr8:6041952-6041971 | None:intergenic | 50.0% |
| ! | GCCTTTTCTGATCCAACCTC+AGG | - | Chr8:6041618-6041637 | MsG0880042252.01.T01:CDS | 50.0% |
| ! | GGCCCTTTTGCCACCATATA+TGG | + | Chr8:6041748-6041767 | None:intergenic | 50.0% |
| ! | GTGTGGTTCTATGCTCATGC+AGG | - | Chr8:6042083-6042102 | MsG0880042252.01.T01:CDS | 50.0% |
| !! | AAGAGTACCCAACAACGTGG+TGG | + | Chr8:6042307-6042326 | None:intergenic | 50.0% |
| !! | ACCTTCTGGATGGGTTGGAT+GGG | - | Chr8:6041548-6041567 | MsG0880042252.01.T01:CDS | 50.0% |
| !! | CACAAGAGTACCCAACAACG+TGG | + | Chr8:6042310-6042329 | None:intergenic | 50.0% |
| !! | GCTATAGAGGCTTGTTGGGT+GGG | + | Chr8:6041468-6041487 | None:intergenic | 50.0% |
| !! | TGCTATAGAGGCTTGTTGGG+TGG | + | Chr8:6041469-6041488 | None:intergenic | 50.0% |
| ACCTGACAACACGTCCAAGG+TGG | + | Chr8:6041925-6041944 | None:intergenic | 55.0% | |
| CAACACGTCCAAGGTGGCAA+TGG | + | Chr8:6041919-6041938 | None:intergenic | 55.0% | |
| CGATTCCAAGCTTCCTGTGG+AGG | + | Chr8:6042196-6042215 | None:intergenic | 55.0% | |
| CGTGCAGTTATCGCTCCCAT+TGG | + | Chr8:6042032-6042051 | None:intergenic | 55.0% | |
| GAGAGATCAGTGGAGGTGGT+TGG | + | Chr8:6041894-6041913 | None:intergenic | 55.0% | |
| GAGTGGAGTATAGCCTCCAC+AGG | - | Chr8:6042180-6042199 | MsG0880042252.01.T01:CDS | 55.0% | |
| GCCCCATGAGATGGCATTCA+AGG | + | Chr8:6042000-6042019 | None:intergenic | 55.0% | |
| GGAAGAGAGATCAGTGGAGG+TGG | + | Chr8:6041898-6041917 | None:intergenic | 55.0% | |
| GGGTACTCTTGTGTGGTGCT+CGG | - | Chr8:6042317-6042336 | MsG0880042252.01.T01:CDS | 55.0% | |
| GGTACTCTTGTGTGGTGCTC+GGG | - | Chr8:6042318-6042337 | MsG0880042252.01.T01:CDS | 55.0% | |
| GTACCCAACAACGTGGTGGT+AGG | + | Chr8:6042303-6042322 | None:intergenic | 55.0% | |
| TCCACGGCAGCCATATATGG+TGG | - | Chr8:6041735-6041754 | MsG0880042252.01.T01:CDS | 55.0% | |
| TCGCCATTGGCATTCGCCTT+GGG | - | Chr8:6042144-6042163 | MsG0880042252.01.T01:CDS | 55.0% | |
| TCGCCTTGGGCAATTGTCTC+CGG | - | Chr8:6042157-6042176 | MsG0880042252.01.T01:CDS | 55.0% | |
| TGGAGGCTATACTCCACTCC+CGG | + | Chr8:6042179-6042198 | None:intergenic | 55.0% | |
| TGGCTGCCGTGGAAGAGATA+AGG | + | Chr8:6041728-6041747 | None:intergenic | 55.0% | |
| TTCGCCATTGGCATTCGCCT+TGG | - | Chr8:6042143-6042162 | MsG0880042252.01.T01:CDS | 55.0% | |
| TTGCCCAAGGCGAATGCCAA+TGG | + | Chr8:6042150-6042169 | None:intergenic | 55.0% | |
| ! | GGAATCGCCGTGTTTTGCCT+TGG | - | Chr8:6042209-6042228 | MsG0880042252.01.T01:CDS | 55.0% |
| !! | CACCTTCTGGATGGGTTGGA+TGG | - | Chr8:6041547-6041566 | MsG0880042252.01.T01:CDS | 55.0% |
| !! | CCTTCTGGATGGGTTGGATG+GGG | - | Chr8:6041549-6041568 | MsG0880042252.01.T01:CDS | 55.0% |
| !! | GATGGGGGCACCATTGTGTA+TGG | + | Chr8:6041772-6041791 | None:intergenic | 55.0% |
| CCCCATCCAACCCATCCAGA+AGG | + | Chr8:6041552-6041571 | None:intergenic | 60.0% | |
| CGCCTTGGGCAATTGTCTCC+GGG | - | Chr8:6042158-6042177 | MsG0880042252.01.T01:CDS | 60.0% | |
| CGGCGATTCCAAGCTTCCTG+TGG | + | Chr8:6042199-6042218 | None:intergenic | 60.0% | |
| CTCCCGGAGACAATTGCCCA+AGG | + | Chr8:6042163-6042182 | None:intergenic | 60.0% | |
| GCCACCATATATGGCTGCCG+TGG | + | Chr8:6041739-6041758 | None:intergenic | 60.0% | |
| GCCACCTTGGACGTGTTGTC+AGG | - | Chr8:6041921-6041940 | MsG0880042252.01.T01:CDS | 60.0% | |
| GGAACTGTGGGGTTCGCCAT+TGG | - | Chr8:6042131-6042150 | MsG0880042252.01.T01:CDS | 60.0% | |
| TGGGCAATTGTCTCCGGGAG+TGG | - | Chr8:6042163-6042182 | MsG0880042252.01.T01:CDS | 60.0% | |
| !! | GGGGGCACCATTGTGTATGG+TGG | + | Chr8:6041769-6041788 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 6041459 | 6042556 | 6041459 | ID=MsG0880042252.01;Name=MsG0880042252.01 |
| Chr8 | mRNA | 6041459 | 6042556 | 6041459 | ID=MsG0880042252.01.T01;Parent=MsG0880042252.01;Name=MsG0880042252.01.T01;_AED=0.44;_eAED=0.44;_QI=0|-1|0|1|-1|1|1|0|365 |
| Chr8 | exon | 6041459 | 6042556 | 6041459 | ID=MsG0880042252.01.T01:exon:1545;Parent=MsG0880042252.01.T01 |
| Chr8 | CDS | 6041459 | 6042556 | 6041459 | ID=MsG0880042252.01.T01:cds;Parent=MsG0880042252.01.T01 |
| Gene Sequence |
| Protein sequence |
