Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042638.01.T01 | XP_003627187.1 | 91.257 | 183 | 15 | 1 | 1 | 182 | 1 | 183 | 1.31E-110 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042638.01.T01 | P38414 | 69.061 | 181 | 53 | 1 | 1 | 181 | 1 | 178 | 6.09E-82 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042638.01.T01 | G7LIY2 | 91.257 | 183 | 15 | 1 | 1 | 182 | 1 | 183 | 6.24e-111 | 345 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0880042635.01 | MsG0880042638.01 | 0.826601 | 2.481049e-54 | 2.337392e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042638.01.T01 | MTR_8g018570 | 91.257 | 183 | 15 | 1 | 1 | 182 | 1 | 183 | 1.58e-114 | 345 |
| MsG0880042638.01.T01 | MTR_8g018550 | 74.176 | 182 | 46 | 1 | 1 | 182 | 1 | 181 | 2.30e-89 | 280 |
| MsG0880042638.01.T01 | MTR_8g020990 | 72.928 | 181 | 48 | 1 | 1 | 181 | 1 | 180 | 1.28e-81 | 259 |
| MsG0880042638.01.T01 | MTR_8g018690 | 69.022 | 184 | 54 | 2 | 1 | 182 | 1 | 183 | 1.42e-73 | 237 |
| MsG0880042638.01.T01 | MTR_8g018520 | 68.132 | 182 | 57 | 1 | 1 | 182 | 1 | 181 | 1.98e-73 | 237 |
| MsG0880042638.01.T01 | MTR_2g099570 | 63.736 | 182 | 58 | 3 | 1 | 182 | 1 | 174 | 7.64e-70 | 227 |
| MsG0880042638.01.T01 | MTR_8g018690 | 68.156 | 179 | 54 | 2 | 1 | 177 | 1 | 178 | 1.61e-69 | 226 |
| MsG0880042638.01.T01 | MTR_8g018510 | 61.749 | 183 | 68 | 2 | 1 | 182 | 1 | 182 | 4.37e-68 | 223 |
| MsG0880042638.01.T01 | MTR_2g099560 | 62.360 | 178 | 64 | 2 | 5 | 182 | 5 | 179 | 1.67e-67 | 221 |
| MsG0880042638.01.T01 | MTR_8g018430 | 60.920 | 174 | 63 | 2 | 9 | 182 | 6 | 174 | 3.70e-67 | 220 |
| MsG0880042638.01.T01 | MTR_5g024020 | 56.906 | 181 | 72 | 3 | 7 | 182 | 3 | 182 | 1.10e-64 | 213 |
| MsG0880042638.01.T01 | MTR_5g024020 | 56.906 | 181 | 72 | 3 | 7 | 182 | 3 | 182 | 1.75e-64 | 213 |
| MsG0880042638.01.T01 | MTR_3g081130 | 59.659 | 176 | 66 | 2 | 8 | 183 | 4 | 174 | 4.35e-63 | 209 |
| MsG0880042638.01.T01 | MTR_8g018730 | 56.983 | 179 | 72 | 3 | 7 | 182 | 3 | 179 | 4.85e-60 | 200 |
| MsG0880042638.01.T01 | MTR_8g018730 | 56.983 | 179 | 72 | 3 | 7 | 182 | 3 | 179 | 5.76e-60 | 200 |
| MsG0880042638.01.T01 | MTR_8g018420 | 59.649 | 171 | 61 | 3 | 12 | 182 | 7 | 169 | 1.71e-59 | 199 |
| MsG0880042638.01.T01 | MTR_8g018450 | 59.770 | 174 | 58 | 4 | 9 | 182 | 6 | 167 | 1.79e-59 | 199 |
| MsG0880042638.01.T01 | MTR_8g018735 | 53.763 | 186 | 65 | 4 | 8 | 182 | 5 | 180 | 2.59e-55 | 185 |
| MsG0880042638.01.T01 | MTR_8g018735 | 53.763 | 186 | 65 | 4 | 8 | 182 | 5 | 180 | 3.45e-54 | 184 |
| MsG0880042638.01.T01 | MTR_8g018650 | 54.971 | 171 | 59 | 6 | 14 | 182 | 9 | 163 | 3.73e-49 | 170 |
| MsG0880042638.01.T01 | MTR_8g018620 | 54.386 | 171 | 60 | 6 | 14 | 182 | 9 | 163 | 2.63e-47 | 165 |
| MsG0880042638.01.T01 | MTR_3g081130 | 65.686 | 102 | 34 | 1 | 82 | 183 | 2 | 102 | 2.56e-41 | 148 |
| MsG0880042638.01.T01 | MTR_8g018590 | 62.500 | 120 | 37 | 3 | 66 | 182 | 36 | 150 | 4.69e-40 | 144 |
| MsG0880042638.01.T01 | MTR_1g083020 | 45.714 | 175 | 70 | 6 | 10 | 182 | 15 | 166 | 7.48e-36 | 132 |
| MsG0880042638.01.T01 | MTR_1g104650 | 40.698 | 172 | 77 | 5 | 15 | 182 | 9 | 159 | 5.57e-32 | 121 |
| MsG0880042638.01.T01 | MTR_7g113410 | 40.116 | 172 | 78 | 6 | 15 | 182 | 24 | 174 | 2.39e-26 | 105 |
| MsG0880042638.01.T01 | MTR_8g011340 | 34.074 | 135 | 79 | 4 | 56 | 182 | 46 | 178 | 1.08e-16 | 77.8 |
| MsG0880042638.01.T01 | MTR_8g020970 | 35.714 | 126 | 78 | 3 | 57 | 182 | 113 | 235 | 3.99e-13 | 67.4 |
| MsG0880042638.01.T01 | MTR_8g020970 | 35.714 | 126 | 78 | 3 | 57 | 182 | 113 | 235 | 4.47e-13 | 67.4 |
| MsG0880042638.01.T01 | MTR_3g079420 | 42.254 | 71 | 39 | 2 | 112 | 182 | 105 | 173 | 5.65e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042638.01.T01 | AT1G55020 | 43.605 | 172 | 74 | 4 | 13 | 182 | 19 | 169 | 1.05e-37 | 138 |
| MsG0880042638.01.T01 | AT3G22400 | 35.000 | 180 | 89 | 5 | 14 | 186 | 34 | 192 | 2.13e-28 | 111 |
| MsG0880042638.01.T01 | AT1G72520 | 37.302 | 126 | 76 | 3 | 57 | 182 | 114 | 236 | 1.30e-15 | 74.7 |
| MsG0880042638.01.T01 | AT1G17420 | 32.544 | 169 | 91 | 5 | 14 | 182 | 85 | 230 | 2.37e-15 | 73.9 |
Find 54 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACAGTTCCCTTCACCTTT+TGG | 0.267984 | 8:+11771395 | None:intergenic |
| TCAGCTTTGTTTGCAACTCT+TGG | 0.281989 | 8:-11770390 | MsG0880042638.01.T01:CDS |
| TATATATATTCTTACCTTGT+TGG | 0.299943 | 8:+11770324 | None:intergenic |
| CTTTCAGTATTGAATTTGAA+TGG | 0.347490 | 8:-11770522 | MsG0880042638.01.T01:CDS |
| CAGCTTTGTTTGCAACTCTT+GGG | 0.349192 | 8:-11770389 | MsG0880042638.01.T01:CDS |
| ATTAGTGCTACCGTTGTTGA+TGG | 0.397455 | 8:-11771214 | MsG0880042638.01.T01:intron |
| AGCATTAAAGATGAGTTCAT+TGG | 0.402361 | 8:-11771440 | MsG0880042638.01.T01:exon |
| TGGTGAAAGGTCTCTTTGAT+AGG | 0.406344 | 8:-11771420 | MsG0880042638.01.T01:CDS |
| TCCGCCGTTCTGTGGCTCTC+TGG | 0.418784 | 8:-11771240 | MsG0880042638.01.T01:CDS |
| CAAGTGAAATGATAGACGTT+TGG | 0.421329 | 8:-11770194 | MsG0880042638.01.T01:CDS |
| CTTACCTCCTTACCAACATT+GGG | 0.437358 | 8:-11770559 | MsG0880042638.01.T01:CDS |
| AAGCTGATGGTTCCATGGTT+AGG | 0.447537 | 8:+11770406 | None:intergenic |
| TAGTATTTATAGTAGCTGAT+AGG | 0.456735 | 8:+11771528 | None:intergenic |
| TTTATCTCCCAATGTTGGTA+AGG | 0.474944 | 8:+11770552 | None:intergenic |
| TTTCAGTATTGAATTTGAAT+GGG | 0.479425 | 8:-11770521 | MsG0880042638.01.T01:CDS |
| AGCCCCGGTGGTGTAATTGA+CGG | 0.484854 | 8:-11771322 | MsG0880042638.01.T01:CDS |
| CGCCTTGTTCCGCCGTTCTG+TGG | 0.490680 | 8:-11771248 | MsG0880042638.01.T01:CDS |
| AGCTTGTGTCTTGTAACCAT+GGG | 0.519908 | 8:+11771499 | None:intergenic |
| TCTTACCTCCTTACCAACAT+TGG | 0.523100 | 8:-11770560 | MsG0880042638.01.T01:CDS |
| AGCCACAGAACGGCGGAACA+AGG | 0.523357 | 8:+11771246 | None:intergenic |
| CGTCTATCATTTCACTTGGA+AGG | 0.523917 | 8:+11770199 | None:intergenic |
| GACAATGACATGGGAACTCC+AGG | 0.526446 | 8:-11770499 | MsG0880042638.01.T01:CDS |
| CTTCAAGAGTCAAGCTCACA+AGG | 0.535265 | 8:+11770434 | None:intergenic |
| CAAACGTCTATCATTTCACT+TGG | 0.536491 | 8:+11770195 | None:intergenic |
| CTCACTGCAGCTCAAAGCCC+CGG | 0.548891 | 8:-11771337 | MsG0880042638.01.T01:CDS |
| TCTCTTTGATAGGCACCAAA+AGG | 0.555459 | 8:-11771410 | MsG0880042638.01.T01:CDS |
| AAACAAAGCTGATGGTTCCA+TGG | 0.568380 | 8:+11770401 | None:intergenic |
| AGGAACTGGGAAAGGCAAAG+TGG | 0.571905 | 8:-11770608 | MsG0880042638.01.T01:CDS |
| AAGCTTGTGTCTTGTAACCA+TGG | 0.575793 | 8:+11771498 | None:intergenic |
| AAACCGTCAATTACACCACC+GGG | 0.577826 | 8:+11771319 | None:intergenic |
| ATTTGAATGGGACAATGACA+TGG | 0.578107 | 8:-11770509 | MsG0880042638.01.T01:CDS |
| TGATAGGCACCAAAAGGTGA+AGG | 0.578229 | 8:-11771404 | MsG0880042638.01.T01:CDS |
| AAGATGAGTTCATTGGTGAA+AGG | 0.581194 | 8:-11771433 | MsG0880042638.01.T01:CDS |
| ATCTCCCAATGTTGGTAAGG+AGG | 0.582864 | 8:+11770555 | None:intergenic |
| AGAACGGCGGAACAAGGCGG+TGG | 0.593953 | 8:+11771252 | None:intergenic |
| AGAGTTGCAAACAAAGCTGA+TGG | 0.595496 | 8:+11770393 | None:intergenic |
| CTTGAAGATGTTCCTAACCA+TGG | 0.598635 | 8:-11770418 | MsG0880042638.01.T01:CDS |
| GTTGATGCAAAAGAATGTGT+TGG | 0.605040 | 8:-11771371 | MsG0880042638.01.T01:CDS |
| GAAACCGTCAATTACACCAC+CGG | 0.610680 | 8:+11771318 | None:intergenic |
| TATATCGAGAATTATCTGCA+AGG | 0.612656 | 8:-11770469 | MsG0880042638.01.T01:CDS |
| GGAACTGGGAAAGGCAAAGT+GGG | 0.618201 | 8:-11770607 | MsG0880042638.01.T01:CDS |
| GCCAGAGAGCCACAGAACGG+CGG | 0.628448 | 8:+11771239 | None:intergenic |
| TATAGTAGCTGATAGGTGCA+AGG | 0.639232 | 8:+11771535 | None:intergenic |
| ATAAATACTAAGCATCCCCA+TGG | 0.653984 | 8:-11771515 | MsG0880042638.01.T01:five_prime_UTR |
| GATAGGCACCAAAAGGTGAA+GGG | 0.655391 | 8:-11771403 | MsG0880042638.01.T01:CDS |
| TCAGCCAGAGAGCCACAGAA+CGG | 0.665261 | 8:+11771236 | None:intergenic |
| ACTGCAGCTCAAAGCCCCGG+TGG | 0.677703 | 8:-11771334 | MsG0880042638.01.T01:CDS |
| CCAAAAGGTGAAGGGAACTG+TGG | 0.677832 | 8:-11771395 | MsG0880042638.01.T01:CDS |
| TTTGAATGGGACAATGACAT+GGG | 0.685221 | 8:-11770508 | MsG0880042638.01.T01:CDS |
| GAAGTTGTTACCATCAACAA+CGG | 0.700552 | 8:+11771204 | None:intergenic |
| CACAGAACGGCGGAACAAGG+CGG | 0.707322 | 8:+11771249 | None:intergenic |
| ATCGAGAATTATCTGCAAGG+TGG | 0.717460 | 8:-11770466 | MsG0880042638.01.T01:CDS |
| AACCGTCAATTACACCACCG+GGG | 0.780189 | 8:+11771320 | None:intergenic |
| GCTTGTGTCTTGTAACCATG+GGG | 0.785521 | 8:+11771500 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAAAAATGTCAAAAAT+TGG | + | Chr8:11771122-11771141 | None:intergenic | 10.0% |
| !!! | AATTTTTGACATTTTTATAT+AGG | - | Chr8:11771121-11771140 | MsG0880042638.01.T01:intron | 10.0% |
| !! | ATATTTCAATGGAAAAAAAA+GGG | + | Chr8:11770874-11770893 | None:intergenic | 15.0% |
| !! | TATATTTCAATGGAAAAAAA+AGG | + | Chr8:11770875-11770894 | None:intergenic | 15.0% |
| !! | ATTTAACAAGTTATACATGT+TGG | + | Chr8:11771459-11771478 | None:intergenic | 20.0% |
| !! | CTATTGCATATATATTTCAA+TGG | + | Chr8:11770885-11770904 | None:intergenic | 20.0% |
| !! | TACAAAATTATAGTCATTGA+TGG | + | Chr8:11771524-11771543 | None:intergenic | 20.0% |
| !! | TATATATATATTGTGATGTC+CGG | - | Chr8:11770617-11770636 | MsG0880042638.01.T01:intron | 20.0% |
| !! | TATATATATTCTTACCTTGT+TGG | + | Chr8:11771428-11771447 | None:intergenic | 20.0% |
| !!! | GTATAAAGAACATCAAATTT+TGG | - | Chr8:11771034-11771053 | MsG0880042638.01.T01:intron | 20.0% |
| !!! | TTAATATTTACTCATTGACT+CGG | + | Chr8:11770758-11770777 | None:intergenic | 20.0% |
| !!! | TTTCAGTATTGAATTTGAAT+GGG | - | Chr8:11771228-11771247 | MsG0880042638.01.T01:CDS | 20.0% |
| ! | ATATATATATGTTCGAATCC+CGG | + | Chr8:11770639-11770658 | None:intergenic | 25.0% |
| ! | ATATATATATTGTGATGTCC+GGG | - | Chr8:11770618-11770637 | MsG0880042638.01.T01:intron | 25.0% |
| ! | CTTTATACCTACTACATAAT+TGG | + | Chr8:11771022-11771041 | None:intergenic | 25.0% |
| ! | GAAAACTAATGTCAATCTAA+TGG | + | Chr8:11770852-11770871 | None:intergenic | 25.0% |
| ! | TAGTATTTATAGTAGCTGAT+AGG | + | Chr8:11770224-11770243 | None:intergenic | 25.0% |
| ! | TTGATATAATTAAGTGCAAG+TGG | - | Chr8:11770989-11771008 | MsG0880042638.01.T01:intron | 25.0% |
| !! | CTTTCAGTATTGAATTTGAA+TGG | - | Chr8:11771227-11771246 | MsG0880042638.01.T01:CDS | 25.0% |
| !! | GACATTTTTATATAGGAACT+GGG | - | Chr8:11771128-11771147 | MsG0880042638.01.T01:intron | 25.0% |
| !! | TGACATTTTTATATAGGAAC+TGG | - | Chr8:11771127-11771146 | MsG0880042638.01.T01:intron | 25.0% |
| AGCATTAAAGATGAGTTCAT+TGG | - | Chr8:11770309-11770328 | MsG0880042638.01.T01:intron | 30.0% | |
| ATGATGACCAATTATGTAGT+AGG | - | Chr8:11771012-11771031 | MsG0880042638.01.T01:intron | 30.0% | |
| TATATCGAGAATTATCTGCA+AGG | - | Chr8:11771280-11771299 | MsG0880042638.01.T01:CDS | 30.0% | |
| ! | GGTAATTGATTGATAGTAAC+TGG | + | Chr8:11770940-11770959 | None:intergenic | 30.0% |
| ! | TTTTATATAGGAACTGGGAA+AGG | - | Chr8:11771133-11771152 | MsG0880042638.01.T01:intron | 30.0% |
| !! | TAATGTCAATCTAATGGACT+CGG | + | Chr8:11770846-11770865 | None:intergenic | 30.0% |
| !! | TTTTGTTTATCTCCCAATGT+TGG | + | Chr8:11771205-11771224 | None:intergenic | 30.0% |
| AAGATGAGTTCATTGGTGAA+AGG | - | Chr8:11770316-11770335 | MsG0880042638.01.T01:intron | 35.0% | |
| AATCATCATCAGTGAAACTG+AGG | - | Chr8:11771094-11771113 | MsG0880042638.01.T01:intron | 35.0% | |
| AATCGCAATAGACAAAAGTG+AGG | + | Chr8:11770797-11770816 | None:intergenic | 35.0% | |
| ATAAATACTAAGCATCCCCA+TGG | - | Chr8:11770234-11770253 | MsG0880042638.01.T01:intron | 35.0% | |
| ATCATCATCAGTGAAACTGA+GGG | - | Chr8:11771095-11771114 | MsG0880042638.01.T01:intron | 35.0% | |
| ATTTGAATGGGACAATGACA+TGG | - | Chr8:11771240-11771259 | MsG0880042638.01.T01:CDS | 35.0% | |
| CAAACGTCTATCATTTCACT+TGG | + | Chr8:11771557-11771576 | None:intergenic | 35.0% | |
| CAAGTGAAATGATAGACGTT+TGG | - | Chr8:11771555-11771574 | MsG0880042638.01.T01:five_prime_UTR | 35.0% | |
| GAAGTTGTTACCATCAACAA+CGG | + | Chr8:11770548-11770567 | None:intergenic | 35.0% | |
| GTTCAACAGAATTGAGCTAT+GGG | - | Chr8:11770702-11770721 | MsG0880042638.01.T01:intron | 35.0% | |
| GTTGATGCAAAAGAATGTGT+TGG | - | Chr8:11770378-11770397 | MsG0880042638.01.T01:CDS | 35.0% | |
| TTCTCGATATAAAAAGCTCC+TGG | + | Chr8:11771271-11771290 | None:intergenic | 35.0% | |
| TTTATCTCCCAATGTTGGTA+AGG | + | Chr8:11771200-11771219 | None:intergenic | 35.0% | |
| TTTGAATGGGACAATGACAT+GGG | - | Chr8:11771241-11771260 | MsG0880042638.01.T01:CDS | 35.0% | |
| ! | CATTGATGGTATCAAGTTCT+TGG | + | Chr8:11771510-11771529 | None:intergenic | 35.0% |
| !! | AATGTCAATCTAATGGACTC+GGG | + | Chr8:11770845-11770864 | None:intergenic | 35.0% |
| AAACAAAGCTGATGGTTCCA+TGG | + | Chr8:11771351-11771370 | None:intergenic | 40.0% | |
| AAGCTTGTGTCTTGTAACCA+TGG | + | Chr8:11770254-11770273 | None:intergenic | 40.0% | |
| AGAGTTGCAAACAAAGCTGA+TGG | + | Chr8:11771359-11771378 | None:intergenic | 40.0% | |
| AGCTTGTGTCTTGTAACCAT+GGG | + | Chr8:11770253-11770272 | None:intergenic | 40.0% | |
| ATCGAGAATTATCTGCAAGG+TGG | - | Chr8:11771283-11771302 | MsG0880042638.01.T01:CDS | 40.0% | |
| ATTAGTGCTACCGTTGTTGA+TGG | - | Chr8:11770535-11770554 | MsG0880042638.01.T01:CDS | 40.0% | |
| CGTCTATCATTTCACTTGGA+AGG | + | Chr8:11771553-11771572 | None:intergenic | 40.0% | |
| CGTTCAACAGAATTGAGCTA+TGG | - | Chr8:11770701-11770720 | MsG0880042638.01.T01:intron | 40.0% | |
| CTTACCTCCTTACCAACATT+GGG | - | Chr8:11771190-11771209 | MsG0880042638.01.T01:intron | 40.0% | |
| CTTGAAGATGTTCCTAACCA+TGG | - | Chr8:11771331-11771350 | MsG0880042638.01.T01:CDS | 40.0% | |
| GGGTTAAAGAGTTGAAGGTT+TGG | - | Chr8:11770722-11770741 | MsG0880042638.01.T01:intron | 40.0% | |
| TATAGTAGCTGATAGGTGCA+AGG | + | Chr8:11770217-11770236 | None:intergenic | 40.0% | |
| TCTCTTTGATAGGCACCAAA+AGG | - | Chr8:11770339-11770358 | MsG0880042638.01.T01:CDS | 40.0% | |
| TCTTACCTCCTTACCAACAT+TGG | - | Chr8:11771189-11771208 | MsG0880042638.01.T01:intron | 40.0% | |
| TGGTGAAAGGTCTCTTTGAT+AGG | - | Chr8:11770329-11770348 | MsG0880042638.01.T01:intron | 40.0% | |
| ! | ACGCATTTTCTTTGCCAACA+AGG | - | Chr8:11771411-11771430 | MsG0880042638.01.T01:CDS | 40.0% |
| ! | GCTATGGGTTAAAGAGTTGA+AGG | - | Chr8:11770717-11770736 | MsG0880042638.01.T01:intron | 40.0% |
| !! | CAGCTTTGTTTGCAACTCTT+GGG | - | Chr8:11771360-11771379 | MsG0880042638.01.T01:CDS | 40.0% |
| !! | TCAGCTTTGTTTGCAACTCT+TGG | - | Chr8:11771359-11771378 | MsG0880042638.01.T01:CDS | 40.0% |
| AAACCGTCAATTACACCACC+GGG | + | Chr8:11770433-11770452 | None:intergenic | 45.0% | |
| AAGCTGATGGTTCCATGGTT+AGG | + | Chr8:11771346-11771365 | None:intergenic | 45.0% | |
| CACACACACTAGCATGCAAT+GGG | - | Chr8:11770668-11770687 | MsG0880042638.01.T01:intron | 45.0% | |
| CTTCAAGAGTCAAGCTCACA+AGG | + | Chr8:11771318-11771337 | None:intergenic | 45.0% | |
| GAAACCGTCAATTACACCAC+CGG | + | Chr8:11770434-11770453 | None:intergenic | 45.0% | |
| GATAGGCACCAAAAGGTGAA+GGG | - | Chr8:11770346-11770365 | MsG0880042638.01.T01:CDS | 45.0% | |
| GCTTGTGTCTTGTAACCATG+GGG | + | Chr8:11770252-11770271 | None:intergenic | 45.0% | |
| TCACACACACTAGCATGCAA+TGG | - | Chr8:11770667-11770686 | MsG0880042638.01.T01:intron | 45.0% | |
| TGATAGGCACCAAAAGGTGA+AGG | - | Chr8:11770345-11770364 | MsG0880042638.01.T01:CDS | 45.0% | |
| ! | ATCTCCCAATGTTGGTAAGG+AGG | + | Chr8:11771197-11771216 | None:intergenic | 45.0% |
| ! | GACGGTTTCTTCGATTTTGC+TGG | - | Chr8:11770445-11770464 | MsG0880042638.01.T01:CDS | 45.0% |
| !! | GATTTTGCTGGTGATGTTGC+TGG | - | Chr8:11770457-11770476 | MsG0880042638.01.T01:CDS | 45.0% |
| !!! | AATAAAATTTAATATTTTAG+TGG | + | Chr8:11770961-11770980 | None:intergenic | 5.0% |
| AACCGTCAATTACACCACCG+GGG | + | Chr8:11770432-11770451 | None:intergenic | 50.0% | |
| ACACACTAGCATGCAATGGG+CGG | - | Chr8:11770671-11770690 | MsG0880042638.01.T01:intron | 50.0% | |
| AGGAACTGGGAAAGGCAAAG+TGG | - | Chr8:11771141-11771160 | MsG0880042638.01.T01:intron | 50.0% | |
| CCAAAAGGTGAAGGGAACTG+TGG | - | Chr8:11770354-11770373 | MsG0880042638.01.T01:CDS | 50.0% | |
| GACAATGACATGGGAACTCC+AGG | - | Chr8:11771250-11771269 | MsG0880042638.01.T01:CDS | 50.0% | |
| GGAACTGGGAAAGGCAAAGT+GGG | - | Chr8:11771142-11771161 | MsG0880042638.01.T01:intron | 50.0% | |
| ! | CCACAGTTCCCTTCACCTTT+TGG | + | Chr8:11770357-11770376 | None:intergenic | 50.0% |
| AGCCCCGGTGGTGTAATTGA+CGG | - | Chr8:11770427-11770446 | MsG0880042638.01.T01:CDS | 55.0% | |
| CACACTAGCATGCAATGGGC+GGG | - | Chr8:11770672-11770691 | MsG0880042638.01.T01:intron | 55.0% | |
| TCAGCCAGAGAGCCACAGAA+CGG | + | Chr8:11770516-11770535 | None:intergenic | 55.0% | |
| ! | TAGCATGCAATGGGCGGGTT+GGG | - | Chr8:11770677-11770696 | MsG0880042638.01.T01:intron | 55.0% |
| AGCCACAGAACGGCGGAACA+AGG | + | Chr8:11770506-11770525 | None:intergenic | 60.0% | |
| CACAGAACGGCGGAACAAGG+CGG | + | Chr8:11770503-11770522 | None:intergenic | 60.0% | |
| CTAGCATGCAATGGGCGGGT+TGG | - | Chr8:11770676-11770695 | MsG0880042638.01.T01:intron | 60.0% | |
| CTCACTGCAGCTCAAAGCCC+CGG | - | Chr8:11770412-11770431 | MsG0880042638.01.T01:CDS | 60.0% | |
| ACTGCAGCTCAAAGCCCCGG+TGG | - | Chr8:11770415-11770434 | MsG0880042638.01.T01:CDS | 65.0% | |
| AGAACGGCGGAACAAGGCGG+TGG | + | Chr8:11770500-11770519 | None:intergenic | 65.0% | |
| GCCAGAGAGCCACAGAACGG+CGG | + | Chr8:11770513-11770532 | None:intergenic | 65.0% | |
| TCCGCCGTTCTGTGGCTCTC+TGG | - | Chr8:11770509-11770528 | MsG0880042638.01.T01:CDS | 65.0% | |
| ! | CGCCTTGTTCCGCCGTTCTG+TGG | - | Chr8:11770501-11770520 | MsG0880042638.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 11770179 | 11771592 | 11770179 | ID=MsG0880042638.01;Name=MsG0880042638.01 |
| Chr8 | mRNA | 11770179 | 11771592 | 11770179 | ID=MsG0880042638.01.T01;Parent=MsG0880042638.01;Name=MsG0880042638.01.T01;_AED=0.50;_eAED=0.52;_QI=140|1|0.66|1|1|1|3|0|191 |
| Chr8 | exon | 11770179 | 11770226 | 11770179 | ID=MsG0880042638.01.T01:exon:3559;Parent=MsG0880042638.01.T01 |
| Chr8 | exon | 11770339 | 11770628 | 11770339 | ID=MsG0880042638.01.T01:exon:3558;Parent=MsG0880042638.01.T01 |
| Chr8 | exon | 11771215 | 11771592 | 11771215 | ID=MsG0880042638.01.T01:exon:3557;Parent=MsG0880042638.01.T01 |
| Chr8 | five_prime_UTR | 11771453 | 11771592 | 11771453 | ID=MsG0880042638.01.T01:five_prime_utr;Parent=MsG0880042638.01.T01 |
| Chr8 | CDS | 11771215 | 11771452 | 11771215 | ID=MsG0880042638.01.T01:cds;Parent=MsG0880042638.01.T01 |
| Chr8 | CDS | 11770339 | 11770628 | 11770339 | ID=MsG0880042638.01.T01:cds;Parent=MsG0880042638.01.T01 |
| Chr8 | CDS | 11770179 | 11770226 | 11770179 | ID=MsG0880042638.01.T01:cds;Parent=MsG0880042638.01.T01 |
| Gene Sequence |
| Protein sequence |
