AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042905.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042905.01.T01 MTR_8g024520 87.791 172 20 1 14 185 112 282 1.31e-87 259
MsG0880042905.01.T01 MTR_8g024520 83.140 172 26 1 14 185 112 280 1.40e-87 258
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042905.01.T01 AT2G46780 44.762 105 34 6 43 126 151 252 7.60e-12 63.2
MsG0880042905.01.T01 AT2G46780 44.762 105 34 6 43 126 151 252 7.60e-12 63.2

Find 84 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCCTTCTGTTGGAGCTTC+TGG 0.055135 8:+15730583 MsG0880042905.01.T01:CDS
GCTGAGGCAAAATTGGAATT+TGG 0.157884 8:-15730702 None:intergenic
CCAAAATGCTGAGGCAAAAT+TGG 0.204224 8:-15730709 None:intergenic
TCTAATTGACCAATCAATAA+AGG 0.228559 8:-15731596 None:intergenic
CATAGTAAGGGTCACATATT+TGG 0.240113 8:-15730621 None:intergenic
TATTTATCTGACAGATATTC+TGG 0.249082 8:+15730012 MsG0880042905.01.T01:intron
AATTGGAATTTGGGTCATTT+GGG 0.251882 8:-15730692 None:intergenic
TTAATTGAAAAGAAATATTA+AGG 0.266584 8:+15731717 MsG0880042905.01.T01:three_prime_UTR
AGTATCCATGGTCATGGTTT+TGG 0.271120 8:+15730658 MsG0880042905.01.T01:CDS
AGCTTCTGGGGCAATGGGTT+TGG 0.272297 8:+15730597 MsG0880042905.01.T01:CDS
AAATTGGAATTTGGGTCATT+TGG 0.281074 8:-15730693 None:intergenic
AATGATTTCCTTTCTGTTAA+GGG 0.282979 8:+15728737 None:intergenic
TAATGATTTCCTTTCTGTTA+AGG 0.312203 8:+15728736 None:intergenic
ACATTTCCTTATTCAGCATA+TGG 0.317744 8:+15729889 MsG0880042905.01.T01:CDS
ATCCTTCTGTTGGAGCTTCT+GGG 0.321902 8:+15730584 MsG0880042905.01.T01:CDS
AGTTACCCATATGCTGAATA+AGG 0.334120 8:-15729895 None:intergenic
TGTTGGAGCTTCTGGGGCAA+TGG 0.334769 8:+15730591 MsG0880042905.01.T01:CDS
TCAACTATTGATTATGTCTT+GGG 0.337812 8:+15731489 MsG0880042905.01.T01:three_prime_UTR
CAGAACTATTACAATGTCTA+TGG 0.345598 8:+15730538 MsG0880042905.01.T01:intron
TTGAGCTTCGGTAGCTCAAT+AGG 0.349937 8:+15731628 MsG0880042905.01.T01:three_prime_UTR
GAATCTAATTATTTAAGCTT+TGG 0.354613 8:+15731446 MsG0880042905.01.T01:three_prime_UTR
CTAATTGACCAATCAATAAA+GGG 0.356198 8:-15731595 None:intergenic
TCTTTGAACCCTTTATTGAT+TGG 0.357423 8:+15731587 MsG0880042905.01.T01:three_prime_UTR
AGAATTATTACCAGCACTAA+TGG 0.360267 8:-15730776 None:intergenic
CTGAGGCAAAATTGGAATTT+GGG 0.360464 8:-15730701 None:intergenic
TACCAATGTTGTGGAATCTT+AGG 0.371330 8:+15728760 MsG0880042905.01.T01:CDS
GTTGGAGCTTCTGGGGCAAT+GGG 0.372650 8:+15730592 MsG0880042905.01.T01:CDS
CAAATATGTGACCCTTACTA+TGG 0.375117 8:+15730622 MsG0880042905.01.T01:CDS
AATAGTTGAATTACTCTAGA+AGG 0.392515 8:-15731475 None:intergenic
TTCAACTATTGATTATGTCT+TGG 0.400574 8:+15731488 MsG0880042905.01.T01:three_prime_UTR
ACAAAGGACTATTATGTCAT+TGG 0.417513 8:-15731524 None:intergenic
TATTACCAGCACTAATGGTT+GGG 0.433671 8:-15730771 None:intergenic
TGTGCATATTGACCATAGTA+AGG 0.433964 8:-15730634 None:intergenic
CATTTCCTTATTCAGCATAT+GGG 0.440818 8:+15729890 MsG0880042905.01.T01:CDS
TGTACTGCCTAGTGGGTTGA+TGG 0.442879 8:-15729867 None:intergenic
ATGAATTGAGAATGTTGTTA+AGG 0.444795 8:-15731308 None:intergenic
AAATGGTGTGCAGGAAGGTT+AGG 0.447075 8:+15729788 MsG0880042905.01.T01:intron
GTACAATCAGTTCCTTATCA+TGG 0.451060 8:+15729826 MsG0880042905.01.T01:CDS
GCCGGTCCTTCACAAGCCTC+TGG 0.455977 8:+15731218 MsG0880042905.01.T01:CDS
AGAAAGTAAAAGTTGAGCTT+CGG 0.469248 8:+15731616 MsG0880042905.01.T01:three_prime_UTR
TCACCTTACTATCCTTCTGT+TGG 0.471067 8:+15730574 MsG0880042905.01.T01:CDS
ATTGAGAATGTTGTTAAGGT+TGG 0.472361 8:-15731304 None:intergenic
GCTCCAACAGAAGGATAGTA+AGG 0.482209 8:-15730577 None:intergenic
TCCAGAGGCTTGTGAAGGAC+CGG 0.491823 8:-15731219 None:intergenic
ATTGATTATGTCTTGGGTGT+TGG 0.508098 8:+15731495 MsG0880042905.01.T01:three_prime_UTR
GATCATATTCATTCATGCAT+AGG 0.512136 8:+15731420 MsG0880042905.01.T01:three_prime_UTR
TGTTAAGGGTACCAATGTTG+TGG 0.513695 8:+15728751 MsG0880042905.01.T01:CDS
ATCATATTCATTCATGCATA+GGG 0.513955 8:+15731421 MsG0880042905.01.T01:three_prime_UTR
TTATTACCAGCACTAATGGT+TGG 0.519138 8:-15730772 None:intergenic
TCCTTCTGTTGGAGCTTCTG+GGG 0.522825 8:+15730585 MsG0880042905.01.T01:CDS
TTGTTCAGTATTTGTTCCAG+AGG 0.523327 8:-15731234 None:intergenic
TGTTGTGGAATCTTAGGAAG+AGG 0.530625 8:+15728766 MsG0880042905.01.T01:CDS
AACATTCTACATCTTGATCA+TGG 0.532848 8:+15731258 MsG0880042905.01.T01:exon
TTGGAATTTGGGTCATTTGG+GGG 0.536181 8:-15730690 None:intergenic
AGGAAATGTGTACTGCCTAG+TGG 0.539088 8:-15729875 None:intergenic
TGCTGCTATTGTAGTAGTTG+TGG 0.540042 8:-15731177 None:intergenic
GTGGATGAAGAACCATGATA+AGG 0.546300 8:-15729838 None:intergenic
GTTGGGATTGCAACTGAAGA+AGG 0.551412 8:-15730754 None:intergenic
CAATATGCACAAAGTATCCA+TGG 0.551625 8:+15730646 MsG0880042905.01.T01:CDS
GCAATCCCAACCATTAGTGC+TGG 0.558559 8:+15730766 MsG0880042905.01.T01:CDS
TTCCTAAGATTCCACAACAT+TGG 0.559486 8:-15728762 None:intergenic
CCGGCCCTTGTTACTACCAC+AGG 0.562277 8:-15731200 None:intergenic
CATTGGTACCCTTAACAGAA+AGG 0.564116 8:-15728745 None:intergenic
TATGATCATCATGGTGATGA+TGG 0.570484 8:-15731346 None:intergenic
GCCCCAGAAGCTCCAACAGA+AGG 0.575329 8:-15730586 None:intergenic
ATTGGAATTTGGGTCATTTG+GGG 0.578017 8:-15730691 None:intergenic
GCACAAAGTATCCATGGTCA+TGG 0.581950 8:+15730652 MsG0880042905.01.T01:CDS
CAGCACCTGTGGTAGTAACA+AGG 0.583493 8:+15731195 MsG0880042905.01.T01:CDS
TTTGTTCCAGAGGCTTGTGA+AGG 0.591071 8:-15731224 None:intergenic
GTGCATATTGACCATAGTAA+GGG 0.591541 8:-15730633 None:intergenic
TACTACAATAGCAGCACCTG+TGG 0.606819 8:+15731184 MsG0880042905.01.T01:CDS
ATGGTGTCTTACAAGTTACA+AGG 0.617235 8:+15731277 MsG0880042905.01.T01:three_prime_UTR
ATGTACTAAAATATAAACAA+AGG 0.631120 8:-15731540 None:intergenic
GAACTCCAAAACCATGACCA+TGG 0.639031 8:-15730663 None:intergenic
CCTGTGGTAGTAACAAGGGC+CGG 0.642231 8:+15731200 MsG0880042905.01.T01:CDS
GGTTAGGCCTCCACATGGAG+TGG 0.656816 8:+15729804 MsG0880042905.01.T01:CDS
GGAAATGTGTACTGCCTAGT+GGG 0.657310 8:-15729874 None:intergenic
AGCACCTGTGGTAGTAACAA+GGG 0.663200 8:+15731196 MsG0880042905.01.T01:CDS
CCTTGTGACCCAAAATGCTG+AGG 0.666097 8:-15730718 None:intergenic
GATTGTACCACTCCATGTGG+AGG 0.680340 8:-15729811 None:intergenic
AGGAAGGTTAGGCCTCCACA+TGG 0.684884 8:+15729799 MsG0880042905.01.T01:intron
ACTGATTGTACCACTCCATG+TGG 0.705430 8:-15729814 None:intergenic
ACAAGACACATTGTATCCTG+CGG 0.715658 8:+15730041 MsG0880042905.01.T01:CDS
AGTGGGTTGATGGAAAACTG+TGG 0.742505 8:-15729857 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTAAAAAAAAAA+AGG - Chr8:15729572-15729553 None:intergenic 0.0%
!!! TTTTTTTTTTTAAAAAAAAA+AGG + Chr8:15729552-15729571 MsG0880042905.01.T01:intron 0.0%
!! TAGTTTCTTTAATAAAAAAA+AGG - Chr8:15729659-15729678 None:intergenic 10.0%
!! TTAATTGAAAAGAAATATTA+AGG + Chr8:15731717-15731736 MsG0880042905.01.T01:three_prime_UTR 10.0%
!!! ATTGTTTTATAAGATTTTAA+AGG + Chr8:15729758-15729777 MsG0880042905.01.T01:intron 10.0%
!!! TTTTTTTTTAAATAGATCTA+GGG + Chr8:15731395-15731414 MsG0880042905.01.T01:three_prime_UTR 10.0%
!!! TTTTTTTTTTAAATAGATCT+AGG + Chr8:15731394-15731413 MsG0880042905.01.T01:three_prime_UTR 10.0%
!! AAAAAGAAGAAATAAAAGAA+TGG - Chr8:15729487-15729506 None:intergenic 15.0%
!! AAGCATAGTAAAATAAATTA+AGG - Chr8:15729235-15729254 None:intergenic 15.0%
!! ATGTACTAAAATATAAACAA+AGG - Chr8:15731543-15731562 None:intergenic 15.0%
!! CAAATTAATCACATATATAT+TGG - Chr8:15730341-15730360 None:intergenic 15.0%
!! TAAATTAAGGAAAAGAAAAA+TGG - Chr8:15729222-15729241 None:intergenic 15.0%
!! TTTAATCTCTCAAATTATAA+AGG - Chr8:15731085-15731104 None:intergenic 15.0%
!! TTTCTTTAATAAAAAAAAGG+TGG - Chr8:15729656-15729675 None:intergenic 15.0%
!!! AAGTTTTTTTTTAGGAAAAT+AGG + Chr8:15731368-15731387 MsG0880042905.01.T01:three_prime_UTR 15.0%
!!! AGAATTTATTTTGAACAATT+TGG + Chr8:15729127-15729146 MsG0880042905.01.T01:intron 15.0%
!!! ATGATCATAAGTTTTTTTTT+AGG + Chr8:15731360-15731379 MsG0880042905.01.T01:three_prime_UTR 15.0%
!!! ATTTTAAAGGAAAATTGAAA+TGG + Chr8:15729771-15729790 MsG0880042905.01.T01:intron 15.0%
!!! CAATTTTTTTTTGTTTTTGT+AGG + Chr8:15729315-15729334 MsG0880042905.01.T01:intron 15.0%
!!! TATTTTTTTCTTCTAAAGAT+AGG + Chr8:15731693-15731712 MsG0880042905.01.T01:three_prime_UTR 15.0%
!!! TGTTTATATTTTAGTACATA+GGG + Chr8:15731544-15731563 MsG0880042905.01.T01:three_prime_UTR 15.0%
!!! TTGTTTATATTTTAGTACAT+AGG + Chr8:15731543-15731562 MsG0880042905.01.T01:three_prime_UTR 15.0%
!! AAAAAAACTTATGATCATCA+TGG - Chr8:15731358-15731377 None:intergenic 20.0%
!! AAATAATCAACCATAAAAAG+TGG - Chr8:15729682-15729701 None:intergenic 20.0%
!! AAATATAAACTATGCACAAA+TGG - Chr8:15729258-15729277 None:intergenic 20.0%
!! ACATTTACCAAAATATTTGT+TGG + Chr8:15729070-15729089 MsG0880042905.01.T01:intron 20.0%
!! GAATCTAATTATTTAAGCTT+TGG + Chr8:15731446-15731465 MsG0880042905.01.T01:three_prime_UTR 20.0%
!! GTTTCAATTAATAGTGAAAT+CGG + Chr8:15730091-15730110 MsG0880042905.01.T01:intron 20.0%
!! TTAAAGAATCAACTAAATCA+CGG + Chr8:15730403-15730422 MsG0880042905.01.T01:intron 20.0%
!!! AGGTATATTGTGTTATTATT+TGG + Chr8:15729572-15729591 MsG0880042905.01.T01:intron 20.0%
!!! TAATTTTGTCAAAATCATGT+TGG + Chr8:15730283-15730302 MsG0880042905.01.T01:intron 20.0%
! AATAGTTGAATTACTCTAGA+AGG - Chr8:15731478-15731497 None:intergenic 25.0%
! AATGAAGAGTGAAAAAGAAA+AGG - Chr8:15728916-15728935 None:intergenic 25.0%
! AGAAATAAAAGAATGGTAGA+AGG - Chr8:15729480-15729499 None:intergenic 25.0%
! ATCATATTCATTCATGCATA+GGG + Chr8:15731421-15731440 MsG0880042905.01.T01:three_prime_UTR 25.0%
! ATGAAGAGTGAAAAAGAAAA+GGG - Chr8:15728915-15728934 None:intergenic 25.0%
! ATGAATTGAGAATGTTGTTA+AGG - Chr8:15731311-15731330 None:intergenic 25.0%
! CTAATTGACCAATCAATAAA+GGG - Chr8:15731598-15731617 None:intergenic 25.0%
! TAGAATTGACATCAAAGAAA+AGG - Chr8:15729989-15730008 None:intergenic 25.0%
! TATTTATCTGACAGATATTC+TGG + Chr8:15730012-15730031 MsG0880042905.01.T01:intron 25.0%
! TCACTATTAATTGAAACATG+TGG - Chr8:15730088-15730107 None:intergenic 25.0%
! TCTAATTGACCAATCAATAA+AGG - Chr8:15731599-15731618 None:intergenic 25.0%
! TGAGCAATTCTATTTCAAAA+TGG + Chr8:15730847-15730866 MsG0880042905.01.T01:intron 25.0%
! TTATCACTGATAAGTATACT+GGG + Chr8:15729170-15729189 MsG0880042905.01.T01:intron 25.0%
! TTCATTATGTATTCGTTGTA+AGG + Chr8:15730916-15730935 MsG0880042905.01.T01:intron 25.0%
!! TCAACTATTGATTATGTCTT+GGG + Chr8:15731489-15731508 MsG0880042905.01.T01:three_prime_UTR 25.0%
!! TTACCAAAATATTTGTTGGA+GGG + Chr8:15729074-15729093 MsG0880042905.01.T01:intron 25.0%
!! TTCAACTATTGATTATGTCT+TGG + Chr8:15731488-15731507 MsG0880042905.01.T01:three_prime_UTR 25.0%
!! TTTACCAAAATATTTGTTGG+AGG + Chr8:15729073-15729092 MsG0880042905.01.T01:intron 25.0%
!!! AAAGAAACTACCACTTTTTA+TGG + Chr8:15729669-15729688 MsG0880042905.01.T01:intron 25.0%
!!! TGATCATATTAGTCTTTTCA+GGG - Chr8:15731000-15731019 None:intergenic 25.0%
!!! TTGATCATATTAGTCTTTTC+AGG - Chr8:15731001-15731020 None:intergenic 25.0%
AAATTGCAATATTGCTTGTC+TGG + Chr8:15729411-15729430 MsG0880042905.01.T01:intron 30.0%
AAATTGGAATTTGGGTCATT+TGG - Chr8:15730696-15730715 None:intergenic 30.0%
AACATTCTACATCTTGATCA+TGG + Chr8:15731258-15731277 MsG0880042905.01.T01:exon 30.0%
AATCACGATGACACAATAAT+GGG + Chr8:15730117-15730136 MsG0880042905.01.T01:intron 30.0%
AATTGGAATTTGGGTCATTT+GGG - Chr8:15730695-15730714 None:intergenic 30.0%
ACAAAGGACTATTATGTCAT+TGG - Chr8:15731527-15731546 None:intergenic 30.0%
ACATTTCCTTATTCAGCATA+TGG + Chr8:15729889-15729908 MsG0880042905.01.T01:CDS 30.0%
AGAAAGTAAAAGTTGAGCTT+CGG + Chr8:15731616-15731635 MsG0880042905.01.T01:three_prime_UTR 30.0%
AGAATTATTACCAGCACTAA+TGG - Chr8:15730779-15730798 None:intergenic 30.0%
ATTGAGAATGTTGTTAAGGT+TGG - Chr8:15731307-15731326 None:intergenic 30.0%
CAAAATTATGAGTAGCACTT+TGG - Chr8:15730271-15730290 None:intergenic 30.0%
CAGAACTATTACAATGTCTA+TGG + Chr8:15730538-15730557 MsG0880042905.01.T01:intron 30.0%
CATTTCCTTATTCAGCATAT+GGG + Chr8:15729890-15729909 MsG0880042905.01.T01:CDS 30.0%
CTAGGATGAATCAAATTGAT+AGG - Chr8:15729623-15729642 None:intergenic 30.0%
CTATCAATTTGATTCATCCT+AGG + Chr8:15729621-15729640 MsG0880042905.01.T01:intron 30.0%
GATCATATTCATTCATGCAT+AGG + Chr8:15731420-15731439 MsG0880042905.01.T01:three_prime_UTR 30.0%
GTTATCACTGATAAGTATAC+TGG + Chr8:15729169-15729188 MsG0880042905.01.T01:intron 30.0%
TCATTCTCTCATATTGTCTT+TGG + Chr8:15728931-15728950 MsG0880042905.01.T01:intron 30.0%
TCTTTGAACCCTTTATTGAT+TGG + Chr8:15731587-15731606 MsG0880042905.01.T01:three_prime_UTR 30.0%
! ATACTTCCATGACATAGTTT+TGG + Chr8:15730142-15730161 MsG0880042905.01.T01:intron 30.0%
! CAAATTGATAGGTTGAACAA+TGG - Chr8:15729612-15729631 None:intergenic 30.0%
! GGTAAATGTTGTGTCATTAT+TGG - Chr8:15729059-15729078 None:intergenic 30.0%
! GTTTTTGTAGGTGACATTTA+AGG + Chr8:15729327-15729346 MsG0880042905.01.T01:intron 30.0%
! TAACCCTCCAACAAATATTT+TGG - Chr8:15729080-15729099 None:intergenic 30.0%
!!! ATCATATTAGTCTTTTCAGG+GGG - Chr8:15730998-15731017 None:intergenic 30.0%
!!! GATCATATTAGTCTTTTCAG+GGG - Chr8:15730999-15731018 None:intergenic 30.0%
AAGTATACTGGGAGATCTAA+AGG + Chr8:15729181-15729200 MsG0880042905.01.T01:intron 35.0%
AATCCATCTCCAGTTATTGA+TGG + Chr8:15729379-15729398 MsG0880042905.01.T01:intron 35.0%
AGTTACCCATATGCTGAATA+AGG - Chr8:15729898-15729917 None:intergenic 35.0%
ATGACACCAAAACTATGTCA+TGG - Chr8:15730151-15730170 None:intergenic 35.0%
ATGGTGTCTTACAAGTTACA+AGG + Chr8:15731277-15731296 MsG0880042905.01.T01:three_prime_UTR 35.0%
ATTGATTATGTCTTGGGTGT+TGG + Chr8:15731495-15731514 MsG0880042905.01.T01:three_prime_UTR 35.0%
ATTGGAATTTGGGTCATTTG+GGG - Chr8:15730694-15730713 None:intergenic 35.0%
CAAATATGTGACCCTTACTA+TGG + Chr8:15730622-15730641 MsG0880042905.01.T01:CDS 35.0%
CATAGTAAGGGTCACATATT+TGG - Chr8:15730624-15730643 None:intergenic 35.0%
CTGAGGCAAAATTGGAATTT+GGG - Chr8:15730704-15730723 None:intergenic 35.0%
GAATCACGATGACACAATAA+TGG + Chr8:15730116-15730135 MsG0880042905.01.T01:intron 35.0%
GTACAATCAGTTCCTTATCA+TGG + Chr8:15729826-15729845 MsG0880042905.01.T01:CDS 35.0%
GTGCATATTGACCATAGTAA+GGG - Chr8:15730636-15730655 None:intergenic 35.0%
TACCAATGTTGTGGAATCTT+AGG + Chr8:15728760-15728779 MsG0880042905.01.T01:CDS 35.0%
TATTACCAGCACTAATGGTT+GGG - Chr8:15730774-15730793 None:intergenic 35.0%
TGTGCATATTGACCATAGTA+AGG - Chr8:15730637-15730656 None:intergenic 35.0%
TTATTACCAGCACTAATGGT+TGG - Chr8:15730775-15730794 None:intergenic 35.0%
TTCCTAAGATTCCACAACAT+TGG - Chr8:15728765-15728784 None:intergenic 35.0%
TTGTTCAGTATTTGTTCCAG+AGG - Chr8:15731237-15731256 None:intergenic 35.0%
! AATGGCCAGAATTTTCCTAA+TGG - Chr8:15730179-15730198 None:intergenic 35.0%
! CAATATGCACAAAGTATCCA+TGG + Chr8:15730646-15730665 MsG0880042905.01.T01:CDS 35.0%
! CAATTTTCAGCAACAGTAAC+TGG + Chr8:15731152-15731171 MsG0880042905.01.T01:intron 35.0%
! CAATTTTGCCTCAGCATTTT+GGG + Chr8:15730710-15730729 MsG0880042905.01.T01:CDS 35.0%
! TATGATCATCATGGTGATGA+TGG - Chr8:15731349-15731368 None:intergenic 35.0%
!!! TCATATTAGTCTTTTCAGGG+GGG - Chr8:15730997-15731016 None:intergenic 35.0%
!!! TGACATAGTTTTGGTGTCAT+TGG + Chr8:15730151-15730170 MsG0880042905.01.T01:intron 35.0%
AATTGAAATGGTGTGCAGGA+AGG + Chr8:15729783-15729802 MsG0880042905.01.T01:intron 40.0%
ACAAGACACATTGTATCCTG+CGG + Chr8:15730041-15730060 MsG0880042905.01.T01:CDS 40.0%
ACACATCACACACACATCAA+TGG - Chr8:15730197-15730216 None:intergenic 40.0%
ACTGGGAGATCTAAAGGTTA+TGG + Chr8:15729187-15729206 MsG0880042905.01.T01:intron 40.0%
ATTACATCAACACTTACCGC+AGG - Chr8:15730060-15730079 None:intergenic 40.0%
CATTGGTACCCTTAACAGAA+AGG - Chr8:15728748-15728767 None:intergenic 40.0%
CCAAAATGCTGAGGCAAAAT+TGG - Chr8:15730712-15730731 None:intergenic 40.0%
CTCAACAAGACAACCTCATA+TGG + Chr8:15729014-15729033 MsG0880042905.01.T01:intron 40.0%
CTTCCATCAATAACTGGAGA+TGG - Chr8:15729385-15729404 None:intergenic 40.0%
GCTCTTCTTCCATCAATAAC+TGG - Chr8:15729391-15729410 None:intergenic 40.0%
GCTGAGGCAAAATTGGAATT+TGG - Chr8:15730705-15730724 None:intergenic 40.0%
GGAAAATTGAAATGGTGTGC+AGG + Chr8:15729779-15729798 MsG0880042905.01.T01:intron 40.0%
GTGGATGAAGAACCATGATA+AGG - Chr8:15729841-15729860 None:intergenic 40.0%
TCACCTTACTATCCTTCTGT+TGG + Chr8:15730574-15730593 MsG0880042905.01.T01:CDS 40.0%
TGCTGCTATTGTAGTAGTTG+TGG - Chr8:15731180-15731199 None:intergenic 40.0%
TGTTGTGGAATCTTAGGAAG+AGG + Chr8:15728766-15728785 MsG0880042905.01.T01:CDS 40.0%
TTGGAATTTGGGTCATTTGG+GGG - Chr8:15730693-15730712 None:intergenic 40.0%
TTGTTACCACTCACCATATG+AGG - Chr8:15729030-15729049 None:intergenic 40.0%
! AGTATCCATGGTCATGGTTT+TGG + Chr8:15730658-15730677 MsG0880042905.01.T01:CDS 40.0%
! CCAATTTTGCCTCAGCATTT+TGG + Chr8:15730709-15730728 MsG0880042905.01.T01:CDS 40.0%
! GTTAGCTTGGGAAACTCAAA+GGG + Chr8:15729096-15729115 MsG0880042905.01.T01:intron 40.0%
! TGATAGGTTGAACAATGGCA+GGG - Chr8:15729607-15729626 None:intergenic 40.0%
! TTGATAGGTTGAACAATGGC+AGG - Chr8:15729608-15729627 None:intergenic 40.0%
!! ATTTGTTGGAGGGTTAGCTT+GGG + Chr8:15729084-15729103 MsG0880042905.01.T01:intron 40.0%
!! TATTTGTTGGAGGGTTAGCT+TGG + Chr8:15729083-15729102 MsG0880042905.01.T01:intron 40.0%
!! TGGTGCCATTAGGAAAATTC+TGG + Chr8:15730171-15730190 MsG0880042905.01.T01:intron 40.0%
!! TGTTAAGGGTACCAATGTTG+TGG + Chr8:15728751-15728770 MsG0880042905.01.T01:CDS 40.0%
AAATGGTGTGCAGGAAGGTT+AGG + Chr8:15729788-15729807 MsG0880042905.01.T01:intron 45.0%
ACTGATTGTACCACTCCATG+TGG - Chr8:15729817-15729836 None:intergenic 45.0%
AGACAACCTCATATGGTGAG+TGG + Chr8:15729021-15729040 MsG0880042905.01.T01:intron 45.0%
AGCACCTGTGGTAGTAACAA+GGG + Chr8:15731196-15731215 MsG0880042905.01.T01:CDS 45.0%
AGGAAATGTGTACTGCCTAG+TGG - Chr8:15729878-15729897 None:intergenic 45.0%
ATCCTTCTGTTGGAGCTTCT+GGG + Chr8:15730584-15730603 MsG0880042905.01.T01:CDS 45.0%
CGATCACTAACTCTTCAGCA+TGG + Chr8:15729447-15729466 MsG0880042905.01.T01:intron 45.0%
GAACTCCAAAACCATGACCA+TGG - Chr8:15730666-15730685 None:intergenic 45.0%
GCTCCAACAGAAGGATAGTA+AGG - Chr8:15730580-15730599 None:intergenic 45.0%
GGAAATGTGTACTGCCTAGT+GGG - Chr8:15729877-15729896 None:intergenic 45.0%
GGTGACATTTAAGGATCCAG+AGG + Chr8:15729336-15729355 MsG0880042905.01.T01:intron 45.0%
GTTGGGATTGCAACTGAAGA+AGG - Chr8:15730757-15730776 None:intergenic 45.0%
TACTACAATAGCAGCACCTG+TGG + Chr8:15731184-15731203 MsG0880042905.01.T01:CDS 45.0%
TATCCTTCTGTTGGAGCTTC+TGG + Chr8:15730583-15730602 MsG0880042905.01.T01:CDS 45.0%
TTGAGCTTCGGTAGCTCAAT+AGG + Chr8:15731628-15731647 MsG0880042905.01.T01:three_prime_UTR 45.0%
TTTGTTCCAGAGGCTTGTGA+AGG - Chr8:15731227-15731246 None:intergenic 45.0%
! CAGTTTTCCATCAACCCACT+AGG + Chr8:15729860-15729879 MsG0880042905.01.T01:CDS 45.0%
! GCACAAAGTATCCATGGTCA+TGG + Chr8:15730652-15730671 MsG0880042905.01.T01:CDS 45.0%
!! AAAGGTGGTAGCTTTAGCCT+AGG - Chr8:15729641-15729660 None:intergenic 45.0%
!! AGTGGGTTGATGGAAAACTG+TGG - Chr8:15729860-15729879 None:intergenic 45.0%
!! GGTTAGCTTGGGAAACTCAA+AGG + Chr8:15729095-15729114 MsG0880042905.01.T01:intron 45.0%
!! TTGGTGTCATTGGTGCCATT+AGG + Chr8:15730161-15730180 MsG0880042905.01.T01:intron 45.0%
!!! TTATTTATTTACTATTTTTT+TGG + Chr8:15729696-15729715 MsG0880042905.01.T01:intron 5.0%
CACCAATGGCACCAAAGCTA+TGG + Chr8:15730243-15730262 MsG0880042905.01.T01:intron 50.0%
CAGCACCTGTGGTAGTAACA+AGG + Chr8:15731195-15731214 MsG0880042905.01.T01:CDS 50.0%
CATGCTCTTATAGCTGCCTC+TGG - Chr8:15729355-15729374 None:intergenic 50.0%
CCTTGTGACCCAAAATGCTG+AGG - Chr8:15730721-15730740 None:intergenic 50.0%
GATGCAAGCTATGGCACCAA+TGG + Chr8:15730229-15730248 MsG0880042905.01.T01:intron 50.0%
GATTGTACCACTCCATGTGG+AGG - Chr8:15729814-15729833 None:intergenic 50.0%
GCAATCCCAACCATTAGTGC+TGG + Chr8:15730766-15730785 MsG0880042905.01.T01:CDS 50.0%
GTGTGTGTGATGTGTGTGTG+TGG + Chr8:15730202-15730221 MsG0880042905.01.T01:intron 50.0%
TCCTTCTGTTGGAGCTTCTG+GGG + Chr8:15730585-15730604 MsG0880042905.01.T01:CDS 50.0%
TGTGTGATGTGTGTGTGTGG+TGG + Chr8:15730205-15730224 MsG0880042905.01.T01:intron 50.0%
! TGTGGTGGAGATGCAAGCTA+TGG + Chr8:15730220-15730239 MsG0880042905.01.T01:intron 50.0%
!! CCTCAGCATTTTGGGTCACA+AGG + Chr8:15730718-15730737 MsG0880042905.01.T01:CDS 50.0%
!! GCACTTTGGTGCCATAGCTT+TGG - Chr8:15730257-15730276 None:intergenic 50.0%
!! TGCCATAGCTTTGGTGCCAT+TGG - Chr8:15730248-15730267 None:intergenic 50.0%
!! TGTACTGCCTAGTGGGTTGA+TGG - Chr8:15729870-15729889 None:intergenic 50.0%
AGGAAGGTTAGGCCTCCACA+TGG + Chr8:15729799-15729818 MsG0880042905.01.T01:intron 55.0%
CCTGTGGTAGTAACAAGGGC+CGG + Chr8:15731200-15731219 MsG0880042905.01.T01:CDS 55.0%
TCCAGAGGCTTGTGAAGGAC+CGG - Chr8:15731222-15731241 None:intergenic 55.0%
!! AGCTTCTGGGGCAATGGGTT+TGG + Chr8:15730597-15730616 MsG0880042905.01.T01:CDS 55.0%
!! GTTGGAGCTTCTGGGGCAAT+GGG + Chr8:15730592-15730611 MsG0880042905.01.T01:CDS 55.0%
!! TGTTGGAGCTTCTGGGGCAA+TGG + Chr8:15730591-15730610 MsG0880042905.01.T01:CDS 55.0%
CCGGCCCTTGTTACTACCAC+AGG - Chr8:15731203-15731222 None:intergenic 60.0%
GCCCCAGAAGCTCCAACAGA+AGG - Chr8:15730589-15730608 None:intergenic 60.0%
GGTTAGGCCTCCACATGGAG+TGG + Chr8:15729804-15729823 MsG0880042905.01.T01:CDS 60.0%
GCCGGTCCTTCACAAGCCTC+TGG + Chr8:15731218-15731237 MsG0880042905.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 15728738 15731782 15728738 ID=MsG0880042905.01;Name=MsG0880042905.01
Chr8 mRNA 15728738 15731782 15728738 ID=MsG0880042905.01.T01;Parent=MsG0880042905.01;Name=MsG0880042905.01.T01;_AED=0.32;_eAED=0.32;_QI=0|0.75|0.8|1|0.75|0.8|5|508|185
Chr8 exon 15728738 15728787 15728738 ID=MsG0880042905.01.T01:exon:1009;Parent=MsG0880042905.01.T01
Chr8 exon 15729801 15729911 15729801 ID=MsG0880042905.01.T01:exon:1010;Parent=MsG0880042905.01.T01
Chr8 exon 15730026 15730062 15730026 ID=MsG0880042905.01.T01:exon:1011;Parent=MsG0880042905.01.T01
Chr8 exon 15730541 15730787 15730541 ID=MsG0880042905.01.T01:exon:1012;Parent=MsG0880042905.01.T01
Chr8 exon 15731162 15731782 15731162 ID=MsG0880042905.01.T01:exon:1013;Parent=MsG0880042905.01.T01
Chr8 CDS 15728738 15728787 15728738 ID=MsG0880042905.01.T01:cds;Parent=MsG0880042905.01.T01
Chr8 CDS 15729801 15729911 15729801 ID=MsG0880042905.01.T01:cds;Parent=MsG0880042905.01.T01
Chr8 CDS 15730026 15730062 15730026 ID=MsG0880042905.01.T01:cds;Parent=MsG0880042905.01.T01
Chr8 CDS 15730541 15730787 15730541 ID=MsG0880042905.01.T01:cds;Parent=MsG0880042905.01.T01
Chr8 CDS 15731162 15731274 15731162 ID=MsG0880042905.01.T01:cds;Parent=MsG0880042905.01.T01
Chr8 three_prime_UTR 15731275 15731782 15731275 ID=MsG0880042905.01.T01:three_prime_utr;Parent=MsG0880042905.01.T01
Gene Sequence

>MsG0880042905.01.T01

ATGATTTCCTTTCTGTTAAGGGTACCAATGTTGTGGAATCTTAGGAAGAGGAAGGTTAGGCCTCCACATGGAGTGGTACAATCAGTTCCTTATCATGGTTCTTCATCCACAGTTTTCCATCAACCCACTAGGCAGTACACATTTCCTTATTCAGCATATGGATATTCTGGATATTCACAAGACACATTGTATCCTGCGAACTATTACAATGTCTATGGAGTTCAACAATATTCACCTTACTATCCTTCTGTTGGAGCTTCTGGGGCAATGGGTTTGGTCCAAATATGTGACCCTTACTATGGTCAATATGCACAAAGTATCCATGGTCATGGTTTTGGAGTTCAATACCCCCAAATGACCCAAATTCCAATTTTGCCTCAGCATTTTGGGTCACAAGGAATATTGACTCTTCCTTCTTCAGTTGCAATCCCAACCATTAGTGCTGCAACAGTAACTGGAACCACAACTACTACAATAGCAGCACCTGTGGTAGTAACAAGGGCCGGTCCTTCACAAGCCTCTGGAACAAATACTGAACAACAACATTCTACATCTTGA
Protein sequence

>MsG0880042905.01.T01

MISFLLRVPMLWNLRKRKVRPPHGVVQSVPYHGSSSTVFHQPTRQYTFPYSAYGYSGYSQDTLYPANYYNVYGVQQYSPYYPSVGASGAMGLVQICDPYYGQYAQSIHGHGFGVQYPQMTQIPILPQHFGSQGILTLPSSVAIPTISAATVTGTTTTTIAAPVVVTRAGPSQASGTNTEQQHSTS*