AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043068.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043068.01.T01 MTR_8g028080 71.711 152 21 1 1 130 1 152 2.05e-53 169
MsG0880043068.01.T01 MTR_5g041010 44.792 96 41 6 42 130 26 116 7.46e-13 63.2
MsG0880043068.01.T01 MTR_5g040960 40.000 100 43 4 41 130 26 118 9.89e-13 63.2
MsG0880043068.01.T01 MTR_5g040940 37.255 102 42 5 41 130 26 117 1.22e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043068.01.T01 AT2G39780 53.147 143 44 4 1 132 1 131 3.11e-38 129
MsG0880043068.01.T01 AT2G39780 53.191 141 43 4 1 130 1 129 1.52e-37 128
MsG0880043068.01.T01 AT1G14220 39.806 103 40 5 40 130 25 117 1.78e-12 62.4
MsG0880043068.01.T01 AT1G26820 38.144 97 48 4 41 130 20 111 7.68e-11 57.8
MsG0880043068.01.T01 AT2G02990 36.082 97 50 3 41 130 28 119 8.56e-11 57.8

Find 37 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGGGAAATTGTACCTCTTT+TGG 0.240852 8:+18401994 None:intergenic
ATGAGGCTTTAGAGAAATAT+TGG 0.301272 8:-18401341 MsG0880043068.01.T01:CDS
CTCACGTATTGTGAATATTC+CGG 0.330498 8:+18402705 None:intergenic
TGTGAATATTCCGGGAGAAT+TGG 0.352140 8:+18402714 None:intergenic
ATATGTGCTTGTATAATAGA+TGG 0.395405 8:-18402078 MsG0880043068.01.T01:CDS
AGAGTTTGATTATTTCGCTT+TGG 0.420495 8:-18403867 MsG0880043068.01.T01:CDS
TCACGTATTGTGAATATTCC+GGG 0.421919 8:+18402706 None:intergenic
GGCACGTGCCTCCGATGAGC+TGG 0.427914 8:-18403921 MsG0880043068.01.T01:CDS
GTGGTGGAAAGAGTACATTT+TGG 0.430204 8:-18401284 MsG0880043068.01.T01:CDS
AAAACGAGATTTAGTGCAAC+AGG 0.441802 8:+18402020 None:intergenic
CTGGAGCGTCGTGGTGGAGG+AGG 0.448757 8:-18403902 MsG0880043068.01.T01:CDS
GAGCTGGAGCGTCGTGGTGG+AGG 0.450024 8:-18403905 MsG0880043068.01.T01:CDS
GCTCTCATCGTCGTCTTCGC+CGG 0.458186 8:-18403956 MsG0880043068.01.T01:CDS
GAGCGTCGTGGTGGAGGAGG+AGG 0.469056 8:-18403899 MsG0880043068.01.T01:CDS
CTGACTACAATGATGGAACT+TGG 0.493476 8:-18402047 MsG0880043068.01.T01:CDS
CTCTGGCCTGACTACAATGA+TGG 0.498385 8:-18402054 MsG0880043068.01.T01:CDS
CAAGTTCCATCATTGTAGTC+AGG 0.500517 8:+18402048 None:intergenic
AGCTCATCGGAGGCACGTGC+CGG 0.508305 8:+18403923 None:intergenic
GCTTTGGCGTTACAATGGCC+TGG 0.528623 8:-18403851 MsG0880043068.01.T01:intron
CTTCGCCGGAACAGTTTCTC+CGG 0.547127 8:-18403942 MsG0880043068.01.T01:CDS
ACCACGACGCTCCAGCTCAT+CGG 0.554996 8:+18403910 None:intergenic
CTTGTATAATAGATGGACTC+TGG 0.556753 8:-18402071 MsG0880043068.01.T01:CDS
TTTCCACCACTGCATGATGA+TGG 0.557801 8:+18401297 None:intergenic
ATTTCGCTTTGGCGTTACAA+TGG 0.567142 8:-18403856 MsG0880043068.01.T01:CDS
GCAGATATCAACATTGAATG+AGG 0.578880 8:-18401358 MsG0880043068.01.T01:intron
AGGAATAAGCATAGAAGAGG+AGG 0.581840 8:+18403980 None:intergenic
ACGTGCCGGAGAAACTGTTC+CGG 0.588833 8:+18403937 None:intergenic
GGTGAGCCACAGCTCAATGA+TGG 0.594851 8:+18401318 None:intergenic
GCGAGGAATAAGCATAGAAG+AGG 0.608059 8:+18403977 None:intergenic
GATGAGCTGGAGCGTCGTGG+TGG 0.624571 8:-18403908 MsG0880043068.01.T01:CDS
CGAAGACGACGATGAGAGCG+AGG 0.634942 8:+18403960 None:intergenic
GGCTCACCATCATCATGCAG+TGG 0.639472 8:-18401303 MsG0880043068.01.T01:CDS
CGAGATTTAGTGCAACAGGA+TGG 0.642179 8:+18402024 None:intergenic
TCACCATCATCATGCAGTGG+TGG 0.648168 8:-18401300 MsG0880043068.01.T01:CDS
ACGACGCTCCAGCTCATCGG+AGG 0.658523 8:+18403913 None:intergenic
TATTGGCCATCATTGAGCTG+TGG 0.677031 8:-18401324 MsG0880043068.01.T01:CDS
TCCGATGAGCTGGAGCGTCG+TGG 0.690282 8:-18403911 MsG0880043068.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAAATAAACTTAAG+AGG + Chr8:18402123-18402142 None:intergenic 10.0%
!!! TTTTTATTTTGAAATTTTCA+TGG - Chr8:18403606-18403625 MsG0880043068.01.T01:intron 10.0%
!! AAAACTTAGAAAAGTTTAAA+TGG + Chr8:18403857-18403876 None:intergenic 15.0%
!! ATAATTTAGATATGTTGAAA+TGG - Chr8:18402603-18402622 MsG0880043068.01.T01:intron 15.0%
!! ATTCATATTGAAATGATAAA+TGG + Chr8:18401494-18401513 None:intergenic 15.0%
!! TGATAGTAGTAATTATATAA+AGG - Chr8:18401693-18401712 MsG0880043068.01.T01:intron 15.0%
!!! AAAATTACTATCTCATTTTT+TGG - Chr8:18401669-18401688 MsG0880043068.01.T01:intron 15.0%
!!! AATGAGTTTATAGAATTTTT+GGG + Chr8:18401985-18402004 None:intergenic 15.0%
!!! ATTTTATTTTGTCCAAAATT+TGG + Chr8:18403351-18403370 None:intergenic 15.0%
!!! TAATGAGTTTATAGAATTTT+TGG + Chr8:18401986-18402005 None:intergenic 15.0%
!!! TATACTTATGGAATTTTTTT+TGG - Chr8:18402360-18402379 MsG0880043068.01.T01:intron 15.0%
!!! TTTTTAAACTCAAAATAAAC+AGG + Chr8:18402643-18402662 None:intergenic 15.0%
!! AAAAATTCCATAAGTATAAG+TGG + Chr8:18402358-18402377 None:intergenic 20.0%
!! AAAAGAATCTAAAAACAAGA+TGG + Chr8:18403047-18403066 None:intergenic 20.0%
!! AAAGAATCTAAAAACAAGAT+GGG + Chr8:18403046-18403065 None:intergenic 20.0%
!! ATCTGTTTGTGATTAAAAAA+AGG - Chr8:18401636-18401655 MsG0880043068.01.T01:intron 20.0%
!! ATTAATACCACTTATACTTA+TGG - Chr8:18402348-18402367 MsG0880043068.01.T01:intron 20.0%
!! GTAAAAATCAAAATCTGTTA+TGG - Chr8:18403071-18403090 MsG0880043068.01.T01:intron 20.0%
!! TTTAATACCACTTATACTTA+TGG - Chr8:18402394-18402413 MsG0880043068.01.T01:intron 20.0%
!! TTTCTAAATTTGCATAGATT+GGG - Chr8:18402205-18402224 MsG0880043068.01.T01:intron 20.0%
!!! TTTTATTTTGAAATCTTCAC+TGG - Chr8:18403699-18403718 MsG0880043068.01.T01:intron 20.0%
! AAAATCAAAATCTGTTATGG+AGG - Chr8:18403074-18403093 MsG0880043068.01.T01:intron 25.0%
! AAATAAACTTAAGAGGACTA+AGG + Chr8:18402116-18402135 None:intergenic 25.0%
! AATAAACTTAAGAGGACTAA+GGG + Chr8:18402115-18402134 None:intergenic 25.0%
! ACATTACAAACCATATGTAT+CGG - Chr8:18403300-18403319 MsG0880043068.01.T01:intron 25.0%
! AGACTCTTTGGTAAAAATAT+CGG - Chr8:18401719-18401738 MsG0880043068.01.T01:intron 25.0%
! ATATGTGCTTGTATAATAGA+TGG - Chr8:18403174-18403193 MsG0880043068.01.T01:intron 25.0%
! CAAATTCTACTTATGATTTG+TGG - Chr8:18402686-18402705 MsG0880043068.01.T01:intron 25.0%
! GCTTAAAGTTAATTTCTCAA+TGG + Chr8:18402964-18402983 None:intergenic 25.0%
! GTTTCTAAATTTGCATAGAT+TGG - Chr8:18402204-18402223 MsG0880043068.01.T01:intron 25.0%
! TCTATGCAAATTTAGAAACA+TGG + Chr8:18402203-18402222 None:intergenic 25.0%
! TTTATCAAACTGCAACAAAT+TGG + Chr8:18403803-18403822 None:intergenic 25.0%
!! AAACAAACTCAAAGTTCTAA+TGG + Chr8:18403775-18403794 None:intergenic 25.0%
!! AACATTATCAAGTTGTTGTT+AGG - Chr8:18401530-18401549 MsG0880043068.01.T01:intron 25.0%
!! ACATATGGTTTGTAATGTAA+TGG + Chr8:18403298-18403317 None:intergenic 25.0%
!!! AAATTTTCATGGTGTCAATT+TGG - Chr8:18403617-18403636 MsG0880043068.01.T01:intron 25.0%
!!! AATTTTCATGGTGTCAATTT+GGG - Chr8:18403618-18403637 MsG0880043068.01.T01:intron 25.0%
!!! TAGCTTATAGTTTTGCTTTT+TGG - Chr8:18401781-18401800 MsG0880043068.01.T01:intron 25.0%
!!! TCTAACAAATTAGCTTGTAT+TGG - Chr8:18401745-18401764 MsG0880043068.01.T01:intron 25.0%
!!! TTTTTTCAATTAGGATTGCA+TGG - Chr8:18401909-18401928 MsG0880043068.01.T01:intron 25.0%
AACAACGAACTACTAACATT+AGG - Chr8:18403465-18403484 MsG0880043068.01.T01:intron 30.0%
AAGTTGAAAACCGATACATA+TGG + Chr8:18403313-18403332 None:intergenic 30.0%
AGAGTTTGATTATTTCGCTT+TGG - Chr8:18401385-18401404 MsG0880043068.01.T01:intron 30.0%
TCTGTCAAGATAATTGTTGT+AGG + Chr8:18403149-18403168 None:intergenic 30.0%
! ATATAAAGGTGTAGACTCTT+TGG - Chr8:18401707-18401726 MsG0880043068.01.T01:intron 30.0%
! ATGTAATGGTTTGCACATTA+TGG + Chr8:18403284-18403303 None:intergenic 30.0%
! CTGGTTTAACGTTTACATTT+TGG - Chr8:18403718-18403737 MsG0880043068.01.T01:intron 30.0%
!! ATGAGGCTTTAGAGAAATAT+TGG - Chr8:18403911-18403930 MsG0880043068.01.T01:CDS 30.0%
!! ATTTTCATGGTGTCAATTTG+GGG - Chr8:18403619-18403638 MsG0880043068.01.T01:intron 30.0%
!!! CACATATTTTGATGTTGTGT+CGG + Chr8:18402778-18402797 None:intergenic 30.0%
AAAACGAGATTTAGTGCAAC+AGG + Chr8:18403235-18403254 None:intergenic 35.0%
AACTACTAACATTAGGACCT+GGG - Chr8:18403472-18403491 MsG0880043068.01.T01:intron 35.0%
AAGAAAATGAAAGCGACTGA+AGG + Chr8:18402805-18402824 None:intergenic 35.0%
AGCTAGCTAAGTGAATTTGT+AGG - Chr8:18401825-18401844 MsG0880043068.01.T01:intron 35.0%
ATGGACTTGTGGAATGAAAT+TGG - Chr8:18402413-18402432 MsG0880043068.01.T01:intron 35.0%
CACAAGTCCATAAGTATAAG+TGG + Chr8:18402404-18402423 None:intergenic 35.0%
CACTTATACTTATGGACTTG+TGG - Chr8:18402402-18402421 MsG0880043068.01.T01:intron 35.0%
CTAGCTAAGTGAATTTGTAG+GGG - Chr8:18401827-18401846 MsG0880043068.01.T01:intron 35.0%
CTCACGTATTGTGAATATTC+CGG + Chr8:18402550-18402569 None:intergenic 35.0%
GCAGATATCAACATTGAATG+AGG - Chr8:18403894-18403913 MsG0880043068.01.T01:CDS 35.0%
GCTAGCTAAGTGAATTTGTA+GGG - Chr8:18401826-18401845 MsG0880043068.01.T01:intron 35.0%
TCACGTATTGTGAATATTCC+GGG + Chr8:18402549-18402568 None:intergenic 35.0%
TTACCTTGCTTAGTTATAGC+AGG - Chr8:18403375-18403394 MsG0880043068.01.T01:intron 35.0%
! AATGGTTTGCACATTATGGT+CGG + Chr8:18403280-18403299 None:intergenic 35.0%
! ATTCTCTCTGGTGTCAATTT+GGG - Chr8:18403525-18403544 MsG0880043068.01.T01:intron 35.0%
! CAAACTCAAAGTTCTAATGG+TGG + Chr8:18403772-18403791 None:intergenic 35.0%
! CTTGTATAATAGATGGACTC+TGG - Chr8:18403181-18403200 MsG0880043068.01.T01:intron 35.0%
! GGTTTTCAACTTTTCATGCT+TGG - Chr8:18403321-18403340 MsG0880043068.01.T01:intron 35.0%
!! ATCTCGTTTTGATCCAAAAG+AGG - Chr8:18403245-18403264 MsG0880043068.01.T01:intron 35.0%
!! TGGTGGAAAGAGTACATTTT+GGG - Chr8:18403969-18403988 MsG0880043068.01.T01:CDS 35.0%
!! TTTTCATGGTGTCAATTTGG+GGG - Chr8:18403620-18403639 MsG0880043068.01.T01:intron 35.0%
ACAAGGTTCTCCTCATTAAG+GGG - Chr8:18402900-18402919 MsG0880043068.01.T01:intron 40.0%
ACACAAGGTTCTCCTCATTA+AGG - Chr8:18402898-18402917 MsG0880043068.01.T01:intron 40.0%
AGGAATAAGCATAGAAGAGG+AGG + Chr8:18401275-18401294 None:intergenic 40.0%
ATTTCGCTTTGGCGTTACAA+TGG - Chr8:18401396-18401415 MsG0880043068.01.T01:intron 40.0%
CAAGTTCCATCATTGTAGTC+AGG + Chr8:18403207-18403226 None:intergenic 40.0%
CACAAGGTTCTCCTCATTAA+GGG - Chr8:18402899-18402918 MsG0880043068.01.T01:intron 40.0%
CTTCCTGCTATAACTAAGCA+AGG + Chr8:18403381-18403400 None:intergenic 40.0%
GAACTACTAACATTAGGACC+TGG - Chr8:18403471-18403490 MsG0880043068.01.T01:intron 40.0%
GATGGGAAGCAATAACAGAA+AGG + Chr8:18403029-18403048 None:intergenic 40.0%
TGTGAATATTCCGGGAGAAT+TGG + Chr8:18402541-18402560 None:intergenic 40.0%
! AACCATTAGAGGCACAACAA+TGG + Chr8:18401448-18401467 None:intergenic 40.0%
! ATGAAGCACTAACACAAACG+TGG + Chr8:18402870-18402889 None:intergenic 40.0%
! ATGATTTGTGGAGTTCTTGC+TGG - Chr8:18402698-18402717 MsG0880043068.01.T01:intron 40.0%
! ATGCTTGGACTGCCAAATTT+TGG - Chr8:18403336-18403355 MsG0880043068.01.T01:intron 40.0%
! ATGGTTTGCACATTATGGTC+GGG + Chr8:18403279-18403298 None:intergenic 40.0%
! ATTTTCCAGACCCCTTAATG+AGG + Chr8:18402913-18402932 None:intergenic 40.0%
! CTACATGTCAGTGTCTTGTT+CGG - Chr8:18402841-18402860 MsG0880043068.01.T01:intron 40.0%
! CTGACTACAATGATGGAACT+TGG - Chr8:18403205-18403224 MsG0880043068.01.T01:intron 40.0%
! GATTCTCTCTGGTGTCAATT+TGG - Chr8:18403524-18403543 MsG0880043068.01.T01:intron 40.0%
! TCGGGAAATTGTACCTCTTT+TGG + Chr8:18403261-18403280 None:intergenic 40.0%
! TCTCTTCTGTGTATGGACTA+TGG - Chr8:18403118-18403137 MsG0880043068.01.T01:intron 40.0%
! TGATTTGTGGAGTTCTTGCT+GGG - Chr8:18402699-18402718 MsG0880043068.01.T01:intron 40.0%
! TTTCATGGTGTCAATTTGGG+GGG - Chr8:18403621-18403640 MsG0880043068.01.T01:intron 40.0%
!! GGTGGAAAGAGTACATTTTG+GGG - Chr8:18403970-18403989 MsG0880043068.01.T01:CDS 40.0%
!! GTGGTGGAAAGAGTACATTT+TGG - Chr8:18403968-18403987 MsG0880043068.01.T01:CDS 40.0%
CGAGATTTAGTGCAACAGGA+TGG + Chr8:18403231-18403250 None:intergenic 45.0%
GATTTGTGGAGTTCTTGCTG+GGG - Chr8:18402700-18402719 MsG0880043068.01.T01:intron 45.0%
GCGAGGAATAAGCATAGAAG+AGG + Chr8:18401278-18401297 None:intergenic 45.0%
GCTTCATATCCGAGTACACA+AGG - Chr8:18402883-18402902 MsG0880043068.01.T01:intron 45.0%
TATTGGCCATCATTGAGCTG+TGG - Chr8:18403928-18403947 MsG0880043068.01.T01:CDS 45.0%
TGAGGAGAACCTTGTGTACT+CGG + Chr8:18402895-18402914 None:intergenic 45.0%
TTTCCACCACTGCATGATGA+TGG + Chr8:18403958-18403977 None:intergenic 45.0%
TTTGGTAAGCTAGCTCGTAG+AGG - Chr8:18401799-18401818 MsG0880043068.01.T01:intron 45.0%
! CTTTTCAGCTCCAATTCTCC+CGG - Chr8:18402528-18402547 MsG0880043068.01.T01:intron 45.0%
! GCACTGACACTTTGGGTTAA+AGG - Chr8:18402726-18402745 MsG0880043068.01.T01:intron 45.0%
! GGAGCGCTAATGCAACAAAT+TGG + Chr8:18403836-18403855 None:intergenic 45.0%
! TCTCTGGTGTCAATTTGGGT+GGG - Chr8:18403529-18403548 MsG0880043068.01.T01:intron 45.0%
!! GTGCGTTGACAAAAAGTACC+AGG + Chr8:18401422-18401441 None:intergenic 45.0%
!!! GAGTACATTTTGGGGTCATG+AGG - Chr8:18403978-18403997 MsG0880043068.01.T01:CDS 45.0%
!!! TACATTTTGGGGTCATGAGG+TGG - Chr8:18403981-18404000 MsG0880043068.01.T01:CDS 45.0%
!!! AATATTTATTTTTTTCAATT+AGG - Chr8:18401900-18401919 MsG0880043068.01.T01:intron 5.0%
!!! ATTTTTAAGTTTTATTTTTT+AGG - Chr8:18401576-18401595 MsG0880043068.01.T01:intron 5.0%
!!! TTTTTAAGTTTTATTTTTTA+GGG - Chr8:18401577-18401596 MsG0880043068.01.T01:intron 5.0%
ACCTGCGTCTCTTCTGTGTA+TGG - Chr8:18403111-18403130 MsG0880043068.01.T01:intron 50.0%
CCTCTAATGGTTGCTGCAGA+GGG - Chr8:18401456-18401475 MsG0880043068.01.T01:intron 50.0%
CGCCATTGTTGTGCCTCTAA+TGG - Chr8:18401443-18401462 MsG0880043068.01.T01:intron 50.0%
CGGGAGAATTGGAGCTGAAA+AGG + Chr8:18402530-18402549 None:intergenic 50.0%
CTCTGGCCTGACTACAATGA+TGG - Chr8:18403198-18403217 MsG0880043068.01.T01:intron 50.0%
GAGAATCGAACCTGAGACCT+TGG + Chr8:18403511-18403530 None:intergenic 50.0%
GTCTCAGGTTCGATTCTCTC+TGG - Chr8:18403513-18403532 MsG0880043068.01.T01:intron 50.0%
GTTCTCCTCATTAAGGGGTC+TGG - Chr8:18402905-18402924 MsG0880043068.01.T01:intron 50.0%
TACACAGAAGAGACGCAGGT+TGG + Chr8:18403111-18403130 None:intergenic 50.0%
TCACCATCATCATGCAGTGG+TGG - Chr8:18403952-18403971 MsG0880043068.01.T01:CDS 50.0%
TCCATACACAGAAGAGACGC+AGG + Chr8:18403115-18403134 None:intergenic 50.0%
! CTCTCTGGTGTCAATTTGGG+TGG - Chr8:18403528-18403547 MsG0880043068.01.T01:intron 50.0%
!! GGGGTTAGCACTGACACTTT+GGG - Chr8:18402719-18402738 MsG0880043068.01.T01:CDS 50.0%
!! TGGGGTTAGCACTGACACTT+TGG - Chr8:18402718-18402737 MsG0880043068.01.T01:CDS 50.0%
ACGTGCCGGAGAAACTGTTC+CGG + Chr8:18401318-18401337 None:intergenic 55.0%
CCCTCTGCAGCAACCATTAG+AGG + Chr8:18401459-18401478 None:intergenic 55.0%
CGGTGTCTGCGTATCTGACA+CGG + Chr8:18402758-18402777 None:intergenic 55.0%
CTTCGCCGGAACAGTTTCTC+CGG - Chr8:18401310-18401329 MsG0880043068.01.T01:CDS 55.0%
GCCTCTAATGGTTGCTGCAG+AGG - Chr8:18401455-18401474 MsG0880043068.01.T01:intron 55.0%
GCTTTGGCGTTACAATGGCC+TGG - Chr8:18401401-18401420 MsG0880043068.01.T01:intron 55.0%
GGCTCACCATCATCATGCAG+TGG - Chr8:18403949-18403968 MsG0880043068.01.T01:CDS 55.0%
GGTGAGCCACAGCTCAATGA+TGG + Chr8:18403937-18403956 None:intergenic 55.0%
GGTGTCTGCGTATCTGACAC+GGG + Chr8:18402757-18402776 None:intergenic 55.0%
TCGAACCTGAGACCTTGGAG+AGG + Chr8:18403506-18403525 None:intergenic 55.0%
TGGTTGCTGCAGAGGGTAAC+AGG - Chr8:18401463-18401482 MsG0880043068.01.T01:intron 55.0%
ACCACGACGCTCCAGCTCAT+CGG + Chr8:18401345-18401364 None:intergenic 60.0%
CGAAGACGACGATGAGAGCG+AGG + Chr8:18401295-18401314 None:intergenic 60.0%
GCTCTCATCGTCGTCTTCGC+CGG - Chr8:18401296-18401315 MsG0880043068.01.T01:CDS 60.0%
GTGCTCCTCTCCAAGGTCTC+AGG - Chr8:18403498-18403517 MsG0880043068.01.T01:intron 60.0%
! TGGGAGTGTGCTCCTCTCCA+AGG - Chr8:18403491-18403510 MsG0880043068.01.T01:intron 60.0%
! TTGGAGAGGAGCACACTCCC+AGG + Chr8:18403492-18403511 None:intergenic 60.0%
ACGACGCTCCAGCTCATCGG+AGG + Chr8:18401342-18401361 None:intergenic 65.0%
! AGCTCATCGGAGGCACGTGC+CGG + Chr8:18401332-18401351 None:intergenic 65.0%
!! GATGAGCTGGAGCGTCGTGG+TGG - Chr8:18401344-18401363 MsG0880043068.01.T01:CDS 65.0%
!! TCCGATGAGCTGGAGCGTCG+TGG - Chr8:18401341-18401360 MsG0880043068.01.T01:CDS 65.0%
GGCACGTGCCTCCGATGAGC+TGG - Chr8:18401331-18401350 MsG0880043068.01.T01:CDS 70.0%
! GAGCGTCGTGGTGGAGGAGG+AGG - Chr8:18401353-18401372 MsG0880043068.01.T01:CDS 70.0%
!! CTGGAGCGTCGTGGTGGAGG+AGG - Chr8:18401350-18401369 MsG0880043068.01.T01:CDS 70.0%
!! GAGCTGGAGCGTCGTGGTGG+AGG - Chr8:18401347-18401366 MsG0880043068.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 18401263 18404011 18401263 ID=MsG0880043068.01;Name=MsG0880043068.01
Chr8 mRNA 18401263 18404011 18401263 ID=MsG0880043068.01.T01;Parent=MsG0880043068.01;Name=MsG0880043068.01.T01;_AED=0.50;_eAED=0.51;_QI=0|0.33|0.25|1|0.33|0.5|4|0|133
Chr8 exon 18403852 18404011 18403852 ID=MsG0880043068.01.T01:exon:4837;Parent=MsG0880043068.01.T01
Chr8 exon 18402710 18402738 18402710 ID=MsG0880043068.01.T01:exon:4836;Parent=MsG0880043068.01.T01
Chr8 exon 18402008 18402106 18402008 ID=MsG0880043068.01.T01:exon:4835;Parent=MsG0880043068.01.T01
Chr8 exon 18401263 18401376 18401263 ID=MsG0880043068.01.T01:exon:4834;Parent=MsG0880043068.01.T01
Chr8 CDS 18403852 18404011 18403852 ID=MsG0880043068.01.T01:cds;Parent=MsG0880043068.01.T01
Chr8 CDS 18402710 18402738 18402710 ID=MsG0880043068.01.T01:cds;Parent=MsG0880043068.01.T01
Chr8 CDS 18402008 18402106 18402008 ID=MsG0880043068.01.T01:cds;Parent=MsG0880043068.01.T01
Chr8 CDS 18401263 18401376 18401263 ID=MsG0880043068.01.T01:cds;Parent=MsG0880043068.01.T01
Gene Sequence

>MsG0880043068.01.T01

ATGTCTTCTCCTCCTCTTCTATGCTTATTCCTCGCTCTCATCGTCGTCTTCGCCGGAACAGTTTCTCCGGCACGTGCCTCCGATGAGCTGGAGCGTCGTGGTGGAGGAGGAGGAAATCAGAGAGAGTTTGATTATTTCGCTTTGGCGTTACAATGGCCTGCTCCAATTCTCCCGGAATATTCACAATACATCATTATATGTGCTTGTATAATAGATGGACTCTGGCCTGACTACAATGATGGAACTTGGCCATCCTGTTGCACTAAATCTCGTTTTGATCCAAAAGAGATATCAACATTGAATGAGGCTTTAGAGAAATATTGGCCATCATTGAGCTGTGGCTCACCATCATCATGCAGTGGTGGAAAGAGTACATTTTGGGGTCATGAGGTGGTCACTTAA
Protein sequence

>MsG0880043068.01.T01

MSSPPLLCLFLALIVVFAGTVSPARASDELERRGGGGGNQREFDYFALALQWPAPILPEYSQYIIICACIIDGLWPDYNDGTWPSCCTKSRFDPKEISTLNEALEKYWPSLSCGSPSSCSGGKSTFWGHEVVT*