AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043164.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043164.01.T01 MTR_8g030850 90.466 472 4 3 1 433 1 470 0.0 865
MsG0880043164.01.T01 MTR_7g077690 57.856 541 108 8 1 433 1 529 0.0 559
MsG0880043164.01.T01 MTR_7g065220 57.558 344 125 5 98 433 223 553 8.29e-128 384
MsG0880043164.01.T01 MTR_3g069590 54.706 340 132 5 98 429 139 464 8.21e-116 351
MsG0880043164.01.T01 MTR_4g019770 56.047 339 123 6 98 428 135 455 1.47e-115 349
MsG0880043164.01.T01 MTR_5g081410 54.277 339 133 5 98 428 121 445 3.65e-114 346
MsG0880043164.01.T01 MTR_4g075640 50.585 342 149 6 97 432 125 452 4.53e-109 333
MsG0880043164.01.T01 MTR_3g069590 54.248 306 119 4 98 395 139 431 8.66e-103 313
MsG0880043164.01.T01 MTR_4g013165 46.154 325 148 6 110 433 1 299 5.05e-96 294
MsG0880043164.01.T01 MTR_6g087700 44.379 338 162 6 97 433 134 446 8.74e-96 298
MsG0880043164.01.T01 MTR_2g101830 42.899 338 168 5 97 433 124 437 7.00e-94 293
MsG0880043164.01.T01 MTR_5g025960 41.543 337 171 5 97 428 156 471 3.78e-78 253
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043164.01.T01 AT4G00460 59.623 478 139 9 1 432 1 470 0.0 535
MsG0880043164.01.T01 AT4G00460 59.623 478 139 9 1 432 1 470 0.0 535
MsG0880043164.01.T01 AT1G01700 58.420 481 141 11 2 432 11 482 0.0 516
MsG0880043164.01.T01 AT4G00460 70.882 340 90 3 94 432 6 337 2.40e-179 504
MsG0880043164.01.T01 AT1G01700 54.990 511 141 12 2 432 11 512 3.71e-175 500
MsG0880043164.01.T01 AT1G01700 55.211 451 137 11 2 395 11 453 7.72e-156 449
MsG0880043164.01.T01 AT2G45890 60.767 339 120 6 98 433 132 460 4.17e-143 417
MsG0880043164.01.T01 AT5G02010 57.227 339 130 5 98 433 109 435 7.45e-131 388
MsG0880043164.01.T01 AT5G05940 53.959 341 133 6 98 428 141 467 2.56e-117 356
MsG0880043164.01.T01 AT4G38430 50.729 343 148 6 97 432 128 456 2.94e-113 343
MsG0880043164.01.T01 AT5G05940 51.682 327 133 6 98 414 141 452 5.09e-105 320
MsG0880043164.01.T01 AT3G55660 49.107 336 148 6 98 425 146 466 1.84e-103 319
MsG0880043164.01.T01 AT4G00460 52.147 326 103 8 1 280 1 319 1.36e-97 296
MsG0880043164.01.T01 AT3G24620 45.045 333 157 5 97 428 123 430 8.76e-96 297
MsG0880043164.01.T01 AT1G79860 44.807 337 155 6 97 430 130 438 1.33e-94 294
MsG0880043164.01.T01 AT1G01700 50.456 329 105 10 2 280 11 331 3.41e-93 286
MsG0880043164.01.T01 AT1G01700 50.456 329 105 10 2 280 11 331 3.41e-93 286
MsG0880043164.01.T01 AT4G13240 43.620 337 164 5 97 432 112 423 1.05e-92 289
MsG0880043164.01.T01 AT1G52240 45.210 334 154 5 97 429 142 447 7.43e-92 288
MsG0880043164.01.T01 AT3G55660 47.386 306 139 5 98 395 146 437 9.63e-92 284
MsG0880043164.01.T01 AT5G19560 42.515 334 164 7 99 429 84 392 9.19e-86 271
MsG0880043164.01.T01 AT5G19560 42.515 334 164 7 99 429 84 392 9.19e-86 271
MsG0880043164.01.T01 AT5G19560 42.515 334 164 7 99 429 103 411 1.89e-85 270
MsG0880043164.01.T01 AT3G16130 42.229 341 167 7 97 433 128 442 7.29e-82 262
MsG0880043164.01.T01 AT1G31650 39.349 338 178 5 97 428 146 462 5.97e-74 241
MsG0880043164.01.T01 AT1G31650 39.349 338 178 5 97 428 174 490 1.76e-73 241
MsG0880043164.01.T01 AT5G19560 39.667 300 154 6 99 395 103 378 1.08e-71 231
MsG0880043164.01.T01 AT5G19560 42.403 283 135 7 150 429 5 262 3.15e-67 219

Find 75 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATTTGCCATGTATGTTTC+TGG 0.183624 8:+20011000 None:intergenic
GAATTCGCAGCGACTGTATT+TGG 0.205036 8:-20011785 MsG0880043164.01.T01:intron
GTTTCCAGGATACTGAATTT+TGG 0.253433 8:-20011275 MsG0880043164.01.T01:CDS
ATTTATCGGTATATGCATTC+TGG 0.274092 8:-20010023 MsG0880043164.01.T01:CDS
TTCCACATAGCTTTCTTCTC+TGG 0.345818 8:+20011734 None:intergenic
ATCTGATGATCTTGATCTCT+TGG 0.351395 8:-20012470 MsG0880043164.01.T01:CDS
TGCACCAACTGCACAATACT+TGG 0.358540 8:-20011663 MsG0880043164.01.T01:CDS
GGAAATCTTTGATAGTTTCC+AGG 0.365500 8:-20011289 MsG0880043164.01.T01:CDS
GATCTTGATCTCTTGGAGTC+AGG 0.370029 8:-20012463 MsG0880043164.01.T01:intron
GAACAAAGTAAAGGAGCTTA+TGG 0.374883 8:-20009859 MsG0880043164.01.T01:CDS
GAGACAGTCAAGAAGGTTGC+CGG 0.383851 8:+20009986 None:intergenic
GCAGAACAAGGAAGCATGTC+AGG 0.403133 8:-20011249 MsG0880043164.01.T01:CDS
GGAGCTGCTCTTTCAAGGTT+AGG 0.424410 8:-20012526 MsG0880043164.01.T01:CDS
AGCTACTCAAGAGTATTAGA+AGG 0.428280 8:-20009495 MsG0880043164.01.T01:CDS
CTCAAAGAAAAGATGAGAAA+TGG 0.445504 8:-20011164 MsG0880043164.01.T01:CDS
CATACCAAAATTCAGTATCC+TGG 0.452528 8:+20011271 None:intergenic
TGAACTTTCACAAACCTCCT+TGG 0.452835 8:-20009754 MsG0880043164.01.T01:CDS
GAAGCAGAGAAAGCATTCAT+TGG 0.455267 8:-20012500 MsG0880043164.01.T01:CDS
AATTGTGTTTAGCAGGATGT+AGG 0.456282 8:-20009534 MsG0880043164.01.T01:intron
AACATGGAGCTGCTCTTTCA+AGG 0.457825 8:-20012531 MsG0880043164.01.T01:CDS
GTCTAGGAGACACAATTTAT+CGG 0.474497 8:-20010037 MsG0880043164.01.T01:CDS
ATTTGGACAAAATTTGAAGT+TGG 0.478583 8:-20011768 MsG0880043164.01.T01:CDS
GTGATTCTTTCGCGTATTGT+CGG 0.482005 8:-20012642 MsG0880043164.01.T01:CDS
AAGGAGGTTTGTGAAAGTTC+AGG 0.482016 8:+20009756 None:intergenic
TAGCATTCAACATTGTTGCT+TGG 0.484696 8:-20009470 MsG0880043164.01.T01:CDS
TTTATATAAATATCTGCCCT+TGG 0.494670 8:+20011446 None:intergenic
TCGAATGCAGGTTCGAAGGC+AGG 0.501869 8:-20011204 MsG0880043164.01.T01:CDS
TCAAATTCATAAAGCAGCTA+TGG 0.502201 8:-20011058 MsG0880043164.01.T01:CDS
CGTAGTTCACATTCGAATGC+AGG 0.504718 8:-20011216 MsG0880043164.01.T01:CDS
ATTGTGTTTAGCAGGATGTA+GGG 0.506206 8:-20009533 MsG0880043164.01.T01:intron
TAGCAGTGTTCTTGCAGAGA+TGG 0.506247 8:-20011028 MsG0880043164.01.T01:CDS
GTGTCAAGCTTCTGTAGAGC+TGG 0.517488 8:+20011419 None:intergenic
CCAGTGTGAACACAAGGAAC+TGG 0.519145 8:+20011135 None:intergenic
TTCATCCATGGTGAAGGTGA+AGG 0.521605 8:+20012559 None:intergenic
ATCATCATGGAACAAAGTAA+AGG 0.526963 8:-20009868 MsG0880043164.01.T01:CDS
AAGCAGAGAAAGCATTCATT+GGG 0.527308 8:-20012499 MsG0880043164.01.T01:CDS
TAATAAAGTCTCAGCTCTCT+CGG 0.527663 8:+20009800 None:intergenic
CCAGTTCCTTGTGTTCACAC+TGG 0.527780 8:-20011135 MsG0880043164.01.T01:CDS
GTTCCTTGTGTTCACACTGG+TGG 0.537358 8:-20011132 MsG0880043164.01.T01:CDS
TCATCCAAGTATTGTGCAGT+TGG 0.537708 8:+20011659 None:intergenic
TAAGCCATTCAAAATCATCA+TGG 0.539031 8:-20009881 MsG0880043164.01.T01:CDS
TTTACGTCTCCATGTGTACA+TGG 0.542575 8:+20009911 None:intergenic
AGACAGTCAAGAAGGTTGCC+GGG 0.542811 8:+20009987 None:intergenic
GCGAAAGAATCACCACTGAA+TGG 0.543014 8:+20012652 None:intergenic
ACTGCACAATACTTGGATGA+TGG 0.551071 8:-20011656 MsG0880043164.01.T01:CDS
CCATGTTTCACATTCATCCA+TGG 0.555645 8:+20012547 None:intergenic
TAGAGTGGAAGATCAAGTCT+AGG 0.565536 8:-20010053 MsG0880043164.01.T01:CDS
TTCACATTCATCCATGGTGA+AGG 0.570244 8:+20012553 None:intergenic
ATACATGGCAAATCTTCCTA+AGG 0.572069 8:-20010992 MsG0880043164.01.T01:intron
CAAGCTTCTGTAGAGCTGGA+AGG 0.577346 8:+20011423 None:intergenic
ACATTCGAATGCAGGTTCGA+AGG 0.584750 8:-20011208 MsG0880043164.01.T01:CDS
TCATCCATGGTGAAGGTGAA+GGG 0.587938 8:+20012560 None:intergenic
TTGAATCTTGCATGTGTCCA+AGG 0.599804 8:+20009737 None:intergenic
CTTGGATGATGGTACAATTG+TGG 0.600556 8:-20011645 MsG0880043164.01.T01:CDS
CCATGGATGAATGTGAAACA+TGG 0.601903 8:-20012547 MsG0880043164.01.T01:CDS
AAAGAAAAGATGAGAAATGG+TGG 0.604909 8:-20011161 MsG0880043164.01.T01:CDS
CAGAACAAGGAAGCATGTCA+GGG 0.612042 8:-20011248 MsG0880043164.01.T01:CDS
AACCAGAGAAGAAAGCTATG+TGG 0.623805 8:-20011736 MsG0880043164.01.T01:CDS
GTGGCCTCTCTGATAAGTCA+AGG 0.626043 8:-20011113 MsG0880043164.01.T01:CDS
CTGCATTCGAATGTGAACTA+CGG 0.626525 8:+20011217 None:intergenic
AGGCCACCAGTGTGAACACA+AGG 0.628419 8:+20011129 None:intergenic
TCTGGAGACAAGTTCTCACC+CGG 0.637638 8:-20010005 MsG0880043164.01.T01:CDS
TGAAGTATCAAACTTGTCTG+AGG 0.637740 8:-20012611 MsG0880043164.01.T01:CDS
TTGAATCTTCCATGTACACA+TGG 0.645905 8:-20009920 MsG0880043164.01.T01:CDS
GTGACCCTTCACCTTCACCA+TGG 0.646692 8:-20012564 MsG0880043164.01.T01:CDS
GGACATTCCAGAAACATACA+TGG 0.654198 8:-20011007 MsG0880043164.01.T01:CDS
GATGATGACAAGTAGACCAA+GGG 0.663461 8:-20011462 MsG0880043164.01.T01:CDS
CCTGAGTACTCTCCATTCAG+TGG 0.663743 8:-20012664 MsG0880043164.01.T01:CDS
AGATGATGACAAGTAGACCA+AGG 0.666223 8:-20011463 MsG0880043164.01.T01:CDS
TTTGTGCAGATAAATCTATG+AGG 0.667703 8:-20009434 MsG0880043164.01.T01:CDS
CCACTGAATGGAGAGTACTC+AGG 0.680364 8:+20012664 None:intergenic
AATCTTGCATGTGTCCAAGG+AGG 0.686655 8:+20009740 None:intergenic
ATGCAAGATTCAATACAACC+AGG 0.701459 8:-20009727 MsG0880043164.01.T01:intron
GGATGATGGTACAATTGTGG+AGG 0.735815 8:-20011642 MsG0880043164.01.T01:intron
GCTTCCTTGACTTATCAGAG+AGG 0.740663 8:+20011109 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAGTAATTTCTTTAAATT+TGG - Chr8:20011395-20011414 MsG0880043164.01.T01:intron 10.0%
!!! ATTTATTTAATATTTTGGAT+TGG - Chr8:20010353-20010372 MsG0880043164.01.T01:intron 10.0%
!!! GGTTTATTTATTTAATATTT+TGG - Chr8:20010348-20010367 MsG0880043164.01.T01:intron 10.0%
!!! TTTATTTAATATTTTGGATT+GGG - Chr8:20010354-20010373 MsG0880043164.01.T01:intron 10.0%
!!! TTTTTTTAAATTACATTACA+CGG - Chr8:20010594-20010613 MsG0880043164.01.T01:intron 10.0%
!! AAAACAATTACAAAAATCTA+AGG - Chr8:20011684-20011703 MsG0880043164.01.T01:CDS 15.0%
!!! TTCTAGAAAAATTTCATATA+TGG - Chr8:20011609-20011628 MsG0880043164.01.T01:intron 15.0%
!! AACATAAATTTCTTATAGAG+TGG - Chr8:20012093-20012112 MsG0880043164.01.T01:intron 20.0%
!! ACAACACTTATATTAACTTA+TGG - Chr8:20009873-20009892 MsG0880043164.01.T01:CDS 20.0%
!! TAAAAAATTACCATAGAGAT+TGG + Chr8:20010014-20010033 None:intergenic 20.0%
!! TCAATATATAGATCTTTCAT+TGG - Chr8:20011475-20011494 MsG0880043164.01.T01:intron 20.0%
!! TCTCTATATTGTAAATTTGA+GGG + Chr8:20011341-20011360 None:intergenic 20.0%
!! TTCTCTATATTGTAAATTTG+AGG + Chr8:20011342-20011361 None:intergenic 20.0%
!! TTTATGTTTCAAAAGAGAAA+AGG + Chr8:20012081-20012100 None:intergenic 20.0%
!!! AAGTTAATATAAGTGTTGTT+TGG + Chr8:20009872-20009891 None:intergenic 20.0%
!!! TTGTAATTTTGATACATTCA+AGG + Chr8:20010129-20010148 None:intergenic 20.0%
! AAAAACATTCTGGTATTGTA+AGG + Chr8:20010842-20010861 None:intergenic 25.0%
! AATTCAATTACCAATCTCTA+TGG - Chr8:20010001-20010020 MsG0880043164.01.T01:CDS 25.0%
! ATGAAATTTAGACACAACTT+AGG + Chr8:20011240-20011259 None:intergenic 25.0%
! ATTTCATATATGGTACTAGT+AGG - Chr8:20011619-20011638 MsG0880043164.01.T01:intron 25.0%
! CATTTCATATGTATTCACAT+TGG - Chr8:20011752-20011771 MsG0880043164.01.T01:CDS 25.0%
! TGTGAAAACAAAAAACATTC+TGG + Chr8:20010852-20010871 None:intergenic 25.0%
! TTTACTCGTAATATGTTTGT+TGG - Chr8:20010327-20010346 MsG0880043164.01.T01:intron 25.0%
! TTTATATAAATATCTGCCCT+TGG + Chr8:20010718-20010737 None:intergenic 25.0%
! TTTCATATATGGTACTAGTA+GGG - Chr8:20011620-20011639 MsG0880043164.01.T01:intron 25.0%
!! AAGATTTTCAAAGCTTCTTT+TGG - Chr8:20009925-20009944 MsG0880043164.01.T01:CDS 25.0%
!! AGATTTTCAAAGCTTCTTTT+GGG - Chr8:20009926-20009945 MsG0880043164.01.T01:CDS 25.0%
!! ATTTGGACAAAATTTGAAGT+TGG - Chr8:20010393-20010412 MsG0880043164.01.T01:intron 25.0%
!! GGTTTTTATGGATATTTACA+GGG - Chr8:20011496-20011515 MsG0880043164.01.T01:intron 25.0%
!! TGGTTTTTATGGATATTTAC+AGG - Chr8:20011495-20011514 MsG0880043164.01.T01:intron 25.0%
!! TTACGAGTAAACAATCATTT+TGG + Chr8:20010318-20010337 None:intergenic 25.0%
!!! AGAATGTTTTTTGTTTTCAC+AGG - Chr8:20010851-20010870 MsG0880043164.01.T01:intron 25.0%
!!! AGATCTTTCATTGGTTTTTA+TGG - Chr8:20011484-20011503 MsG0880043164.01.T01:intron 25.0%
!!! CTGCTATTTTGTAATTTTGA+AGG - Chr8:20011557-20011576 MsG0880043164.01.T01:intron 25.0%
!!! GTCTTTTGTTAGTTGTTTTA+TGG + Chr8:20010226-20010245 None:intergenic 25.0%
AAAAGAGAAAAGGTCAGAAA+AGG + Chr8:20012071-20012090 None:intergenic 30.0%
AAAGAAAAGATGAGAAATGG+TGG - Chr8:20011000-20011019 MsG0880043164.01.T01:CDS 30.0%
AACAAAGTGATGAAATGGTT+TGG - Chr8:20010039-20010058 MsG0880043164.01.T01:CDS 30.0%
AACTATCAAAAGACACAGTT+AGG + Chr8:20010163-20010182 None:intergenic 30.0%
ACTAATGAAAAACGCATTTG+AGG + Chr8:20010194-20010213 None:intergenic 30.0%
ACTCATAGTTTACTGATAAG+TGG - Chr8:20011783-20011802 MsG0880043164.01.T01:intron 30.0%
ACTGTAACAAAGTGATGAAA+TGG - Chr8:20010034-20010053 MsG0880043164.01.T01:CDS 30.0%
AGTATGACACATTATGAGAT+TGG + Chr8:20010649-20010668 None:intergenic 30.0%
AGTCCATGAAATTATATCTC+CGG - Chr8:20011305-20011324 MsG0880043164.01.T01:intron 30.0%
ATCATCATGGAACAAAGTAA+AGG - Chr8:20012293-20012312 MsG0880043164.01.T01:intron 30.0%
ATTTATCGGTATATGCATTC+TGG - Chr8:20012138-20012157 MsG0880043164.01.T01:intron 30.0%
CAACTTATGTTTGAGTACTA+CGG + Chr8:20011859-20011878 None:intergenic 30.0%
CATAGTTCACTATGGTAAAA+AGG - Chr8:20011816-20011835 MsG0880043164.01.T01:intron 30.0%
CTCAAAGAAAAGATGAGAAA+TGG - Chr8:20010997-20011016 MsG0880043164.01.T01:CDS 30.0%
TAAATTACATTACACGGCTA+TGG - Chr8:20010600-20010619 MsG0880043164.01.T01:intron 30.0%
TAACAGAAGTCTTAAGCAAA+TGG + Chr8:20011214-20011233 None:intergenic 30.0%
TAAGCCATTCAAAATCATCA+TGG - Chr8:20012280-20012299 MsG0880043164.01.T01:intron 30.0%
TCAAATTCATAAAGCAGCTA+TGG - Chr8:20011103-20011122 MsG0880043164.01.T01:CDS 30.0%
TCATATGTATTCACATTGGT+AGG - Chr8:20011756-20011775 MsG0880043164.01.T01:CDS 30.0%
TCTGTACTTGAATAGTAGAA+AGG - Chr8:20011889-20011908 MsG0880043164.01.T01:intron 30.0%
TGATTTACTCGTTACACATT+GGG + Chr8:20011278-20011297 None:intergenic 30.0%
TTTACAGGGACTAAATTGAT+CGG - Chr8:20011510-20011529 MsG0880043164.01.T01:intron 30.0%
TTTGTGCAGATAAATCTATG+AGG - Chr8:20012727-20012746 MsG0880043164.01.T01:CDS 30.0%
! AAATGATTAAAGCAGCGTTT+TGG + Chr8:20011584-20011603 None:intergenic 30.0%
! ATCGGTGTTCTTTAACTTAA+TGG - Chr8:20011528-20011547 MsG0880043164.01.T01:intron 30.0%
! ATGATGATTTTGAATGGCTT+AGG + Chr8:20012281-20012300 None:intergenic 30.0%
! ATTTTCAAAGCTTCTTTTGG+GGG - Chr8:20009928-20009947 MsG0880043164.01.T01:CDS 30.0%
! GACAGACATTGTTTAACTTA+AGG + Chr8:20011373-20011392 None:intergenic 30.0%
! GATTTTCAAAGCTTCTTTTG+GGG - Chr8:20009927-20009946 MsG0880043164.01.T01:CDS 30.0%
! GCGTTTTTCATTAGTCAATT+TGG - Chr8:20010199-20010218 MsG0880043164.01.T01:intron 30.0%
! TGTTCCATGATGATTTTGAA+TGG + Chr8:20012287-20012306 None:intergenic 30.0%
!! ACTATTTCTACACCTTAGTT+AGG - Chr8:20010545-20010564 MsG0880043164.01.T01:intron 30.0%
!!! TTATTTTGAGACAGTCAAGA+AGG + Chr8:20012185-20012204 None:intergenic 30.0%
AACAACTAACAAAAGACACC+TGG - Chr8:20010229-20010248 MsG0880043164.01.T01:intron 35.0%
AACATTGCTTTCATCCACAA+AGG - Chr8:20010809-20010828 MsG0880043164.01.T01:intron 35.0%
AATTGTGTTTAGCAGGATGT+AGG - Chr8:20012627-20012646 MsG0880043164.01.T01:CDS 35.0%
ACAACTAACAAAAGACACCT+GGG - Chr8:20010230-20010249 MsG0880043164.01.T01:intron 35.0%
AGACCGGAGATATAATTTCA+TGG + Chr8:20011311-20011330 None:intergenic 35.0%
AGATTTGCCATGTATGTTTC+TGG + Chr8:20011164-20011183 None:intergenic 35.0%
ATACATGGCAAATCTTCCTA+AGG - Chr8:20011169-20011188 MsG0880043164.01.T01:CDS 35.0%
ATCTGATGATCTTGATCTCT+TGG - Chr8:20009691-20009710 MsG0880043164.01.T01:intron 35.0%
ATGCAAGATTCAATACAACC+AGG - Chr8:20012434-20012453 MsG0880043164.01.T01:intron 35.0%
ATTGTGTTTAGCAGGATGTA+GGG - Chr8:20012628-20012647 MsG0880043164.01.T01:CDS 35.0%
ATTTGAGGGACTAAATAGAC+CGG + Chr8:20011327-20011346 None:intergenic 35.0%
CATACCAAAATTCAGTATCC+TGG + Chr8:20010893-20010912 None:intergenic 35.0%
CTATGCACTTTCTATAAGAG+TGG - Chr8:20012525-20012544 MsG0880043164.01.T01:CDS 35.0%
CTCATGAAATTGTGTTTAGC+AGG - Chr8:20012620-20012639 MsG0880043164.01.T01:CDS 35.0%
CTGATTTACTCGTTACACAT+TGG + Chr8:20011279-20011298 None:intergenic 35.0%
GAACAAAGTAAAGGAGCTTA+TGG - Chr8:20012302-20012321 MsG0880043164.01.T01:intron 35.0%
GTCTAGGAGACACAATTTAT+CGG - Chr8:20012124-20012143 MsG0880043164.01.T01:intron 35.0%
TAATAAAGTCTCAGCTCTCT+CGG + Chr8:20012364-20012383 None:intergenic 35.0%
TAGCATTCAACATTGTTGCT+TGG - Chr8:20012691-20012710 MsG0880043164.01.T01:CDS 35.0%
TAGTTTACTGATAAGTGGAC+AGG - Chr8:20011788-20011807 MsG0880043164.01.T01:intron 35.0%
TGTAGAGCTTGAAATGATGA+AGG - Chr8:20009901-20009920 MsG0880043164.01.T01:CDS 35.0%
TTGAATCTTCCATGTACACA+TGG - Chr8:20012241-20012260 MsG0880043164.01.T01:intron 35.0%
! ATTTGGCACCACGATTTTAA+AGG - Chr8:20011412-20011431 MsG0880043164.01.T01:CDS 35.0%
! GGAAATCTTTGATAGTTTCC+AGG - Chr8:20010872-20010891 MsG0880043164.01.T01:intron 35.0%
! GTTTCCAGGATACTGAATTT+TGG - Chr8:20010886-20010905 MsG0880043164.01.T01:intron 35.0%
! TACTGAGTACACGATCATTT+TGG - Chr8:20010067-20010086 MsG0880043164.01.T01:intron 35.0%
! TGAAGTATCAAACTTGTCTG+AGG - Chr8:20009550-20009569 MsG0880043164.01.T01:intron 35.0%
! TTTTGGTCCGTAAATATGTC+AGG + Chr8:20010301-20010320 None:intergenic 35.0%
!! AAGCAGAGAAAGCATTCATT+GGG - Chr8:20009662-20009681 MsG0880043164.01.T01:intron 35.0%
!! AGCTACTCAAGAGTATTAGA+AGG - Chr8:20012666-20012685 MsG0880043164.01.T01:CDS 35.0%
!! GAATTTTGGTATGCAGAACA+AGG - Chr8:20010900-20010919 MsG0880043164.01.T01:intron 35.0%
!! TTTTGACTCAACTTCTTCTG+TGG - Chr8:20009445-20009464 MsG0880043164.01.T01:CDS 35.0%
!!! TACAACCAGGTATTTTTAGC+TGG - Chr8:20012447-20012466 MsG0880043164.01.T01:intron 35.0%
AACCAGAGAAGAAAGCTATG+TGG - Chr8:20010425-20010444 MsG0880043164.01.T01:intron 40.0%
AAGGAGGTTTGTGAAAGTTC+AGG + Chr8:20012408-20012427 None:intergenic 40.0%
ACCAAATGAGGACTAACCTT+AGG + Chr8:20011188-20011207 None:intergenic 40.0%
ACTGCACAATACTTGGATGA+TGG - Chr8:20010505-20010524 MsG0880043164.01.T01:intron 40.0%
AGATGATGACAAGTAGACCA+AGG - Chr8:20010698-20010717 MsG0880043164.01.T01:intron 40.0%
AGCAAATGGATGACCAAATG+AGG + Chr8:20011200-20011219 None:intergenic 40.0%
ATGCACACTAAGCCTAACTA+AGG + Chr8:20010560-20010579 None:intergenic 40.0%
ATTACATTACACGGCTATGG+CGG - Chr8:20010603-20010622 MsG0880043164.01.T01:intron 40.0%
CAACTAACAAAAGACACCTG+GGG - Chr8:20010231-20010250 MsG0880043164.01.T01:intron 40.0%
CATAGCCAGCTAAAAATACC+TGG + Chr8:20012455-20012474 None:intergenic 40.0%
CCATGGATGAATGTGAAACA+TGG - Chr8:20009614-20009633 MsG0880043164.01.T01:intron 40.0%
CCATGTTTCACATTCATCCA+TGG + Chr8:20009617-20009636 None:intergenic 40.0%
CTGCATTCGAATGTGAACTA+CGG + Chr8:20010947-20010966 None:intergenic 40.0%
GAAATTACAAAAACGTCCCC+AGG + Chr8:20010250-20010269 None:intergenic 40.0%
GACGATGCCTGACATATTTA+CGG - Chr8:20010291-20010310 MsG0880043164.01.T01:intron 40.0%
GATGATGACAAGTAGACCAA+GGG - Chr8:20010699-20010718 MsG0880043164.01.T01:intron 40.0%
GGACATTCCAGAAACATACA+TGG - Chr8:20011154-20011173 MsG0880043164.01.T01:CDS 40.0%
GTGATTCTTTCGCGTATTGT+CGG - Chr8:20009519-20009538 MsG0880043164.01.T01:CDS 40.0%
GTGTGAAAGAACAGCAATCT+TGG + Chr8:20012022-20012041 None:intergenic 40.0%
TAGAGTGGAAGATCAAGTCT+AGG - Chr8:20012108-20012127 MsG0880043164.01.T01:intron 40.0%
TGAACTTTCACAAACCTCCT+TGG - Chr8:20012407-20012426 MsG0880043164.01.T01:intron 40.0%
TGTAAGGAACATAGCCTTTG+TGG + Chr8:20010826-20010845 None:intergenic 40.0%
TTACGTCTCTTACTGTAGAG+TGG + Chr8:20011923-20011942 None:intergenic 40.0%
TTCACATTCATCCATGGTGA+AGG + Chr8:20009611-20009630 None:intergenic 40.0%
TTCCACATAGCTTTCTTCTC+TGG + Chr8:20010430-20010449 None:intergenic 40.0%
TTGAATCTTGCATGTGTCCA+AGG + Chr8:20012427-20012446 None:intergenic 40.0%
TTGCTGCATCAATACAAGCA+TGG + Chr8:20011440-20011459 None:intergenic 40.0%
TTTACGTCTCCATGTGTACA+TGG + Chr8:20012253-20012272 None:intergenic 40.0%
! CTTGGATGATGGTACAATTG+TGG - Chr8:20010516-20010535 MsG0880043164.01.T01:intron 40.0%
! TCATCCAAGTATTGTGCAGT+TGG + Chr8:20010505-20010524 None:intergenic 40.0%
! TCCTAAGGTTAGTCCTCATT+TGG - Chr8:20011184-20011203 MsG0880043164.01.T01:CDS 40.0%
!! GAAGCAGAGAAAGCATTCAT+TGG - Chr8:20009661-20009680 MsG0880043164.01.T01:intron 40.0%
!! GCATGGAACCTTTAAAATCG+TGG + Chr8:20011423-20011442 None:intergenic 40.0%
!!! GCTTTCTTCTCTGGTTTTAG+AGG + Chr8:20010421-20010440 None:intergenic 40.0%
AACATGGAGCTGCTCTTTCA+AGG - Chr8:20009630-20009649 MsG0880043164.01.T01:intron 45.0%
AATCTTGCATGTGTCCAAGG+AGG + Chr8:20012424-20012443 None:intergenic 45.0%
ACATTCGAATGCAGGTTCGA+AGG - Chr8:20010953-20010972 MsG0880043164.01.T01:intron 45.0%
AGGTCGCTCATAGTTCACTA+TGG - Chr8:20011808-20011827 MsG0880043164.01.T01:intron 45.0%
CGTAGTTCACATTCGAATGC+AGG - Chr8:20010945-20010964 MsG0880043164.01.T01:intron 45.0%
GAATTCGCAGCGACTGTATT+TGG - Chr8:20010376-20010395 MsG0880043164.01.T01:intron 45.0%
GATCTTGATCTCTTGGAGTC+AGG - Chr8:20009698-20009717 MsG0880043164.01.T01:intron 45.0%
GCGAAAGAATCACCACTGAA+TGG + Chr8:20009512-20009531 None:intergenic 45.0%
GCTTCCTTGACTTATCAGAG+AGG + Chr8:20011055-20011074 None:intergenic 45.0%
TAGCAGTGTTCTTGCAGAGA+TGG - Chr8:20011133-20011152 MsG0880043164.01.T01:CDS 45.0%
TCATCCATGGTGAAGGTGAA+GGG + Chr8:20009604-20009623 None:intergenic 45.0%
TGCACCAACTGCACAATACT+TGG - Chr8:20010498-20010517 MsG0880043164.01.T01:intron 45.0%
TTCATCCATGGTGAAGGTGA+AGG + Chr8:20009605-20009624 None:intergenic 45.0%
! CAGAACAAGGAAGCATGTCA+GGG - Chr8:20010913-20010932 MsG0880043164.01.T01:intron 45.0%
! GGATGATGGTACAATTGTGG+AGG - Chr8:20010519-20010538 MsG0880043164.01.T01:intron 45.0%
! GTAAGAGACGTAAGCACTGT+TGG - Chr8:20011930-20011949 MsG0880043164.01.T01:intron 45.0%
!! CTTTTGGGGGAAGATATGTC+TGG - Chr8:20009941-20009960 MsG0880043164.01.T01:CDS 45.0%
AGACAGTCAAGAAGGTTGCC+GGG + Chr8:20012177-20012196 None:intergenic 50.0%
CAAGCTTCTGTAGAGCTGGA+AGG + Chr8:20010741-20010760 None:intergenic 50.0%
CCAGTGTGAACACAAGGAAC+TGG + Chr8:20011029-20011048 None:intergenic 50.0%
CCAGTTCCTTGTGTTCACAC+TGG - Chr8:20011026-20011045 MsG0880043164.01.T01:CDS 50.0%
CCTGAGTACTCTCCATTCAG+TGG - Chr8:20009497-20009516 MsG0880043164.01.T01:CDS 50.0%
GAGACAGTCAAGAAGGTTGC+CGG + Chr8:20012178-20012197 None:intergenic 50.0%
GATATGTCTGGCGGTGGTAA+AGG - Chr8:20009953-20009972 MsG0880043164.01.T01:CDS 50.0%
GGAGCTGCTCTTTCAAGGTT+AGG - Chr8:20009635-20009654 MsG0880043164.01.T01:intron 50.0%
GTGGCCTCTCTGATAAGTCA+AGG - Chr8:20011048-20011067 MsG0880043164.01.T01:CDS 50.0%
GTGTCAAGCTTCTGTAGAGC+TGG + Chr8:20010745-20010764 None:intergenic 50.0%
GTTCCTTGTGTTCACACTGG+TGG - Chr8:20011029-20011048 MsG0880043164.01.T01:CDS 50.0%
TCTGGAGACAAGTTCTCACC+CGG - Chr8:20012156-20012175 MsG0880043164.01.T01:intron 50.0%
TTGGGGGAAGATATGTCTGG+CGG - Chr8:20009944-20009963 MsG0880043164.01.T01:CDS 50.0%
! GCAGAACAAGGAAGCATGTC+AGG - Chr8:20010912-20010931 MsG0880043164.01.T01:intron 50.0%
!! CCACTGAATGGAGAGTACTC+AGG + Chr8:20009500-20009519 None:intergenic 50.0%
AGGCCACCAGTGTGAACACA+AGG + Chr8:20011035-20011054 None:intergenic 55.0%
GTGACCCTTCACCTTCACCA+TGG - Chr8:20009597-20009616 MsG0880043164.01.T01:intron 55.0%
TCGAATGCAGGTTCGAAGGC+AGG - Chr8:20010957-20010976 MsG0880043164.01.T01:intron 55.0%
GGGGAAGATATGTCTGGCGG+TGG - Chr8:20009947-20009966 MsG0880043164.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 20009428 20012755 20009428 ID=MsG0880043164.01;Name=MsG0880043164.01
Chr8 mRNA 20009428 20012755 20009428 ID=MsG0880043164.01.T01;Parent=MsG0880043164.01;Name=MsG0880043164.01.T01;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|1|1|6|0|433
Chr8 exon 20012464 20012755 20012464 ID=MsG0880043164.01.T01:exon:5325;Parent=MsG0880043164.01.T01
Chr8 exon 20011643 20011797 20011643 ID=MsG0880043164.01.T01:exon:5324;Parent=MsG0880043164.01.T01
Chr8 exon 20011409 20011483 20011409 ID=MsG0880043164.01.T01:exon:5323;Parent=MsG0880043164.01.T01
Chr8 exon 20010993 20011310 20010993 ID=MsG0880043164.01.T01:exon:5322;Parent=MsG0880043164.01.T01
Chr8 exon 20009728 20010072 20009728 ID=MsG0880043164.01.T01:exon:5321;Parent=MsG0880043164.01.T01
Chr8 exon 20009428 20009544 20009428 ID=MsG0880043164.01.T01:exon:5320;Parent=MsG0880043164.01.T01
Chr8 CDS 20012464 20012755 20012464 ID=MsG0880043164.01.T01:cds;Parent=MsG0880043164.01.T01
Chr8 CDS 20011643 20011797 20011643 ID=MsG0880043164.01.T01:cds;Parent=MsG0880043164.01.T01
Chr8 CDS 20011409 20011483 20011409 ID=MsG0880043164.01.T01:cds;Parent=MsG0880043164.01.T01
Chr8 CDS 20010993 20011310 20010993 ID=MsG0880043164.01.T01:cds;Parent=MsG0880043164.01.T01
Chr8 CDS 20009728 20010072 20009728 ID=MsG0880043164.01.T01:cds;Parent=MsG0880043164.01.T01
Chr8 CDS 20009428 20009544 20009428 ID=MsG0880043164.01.T01:cds;Parent=MsG0880043164.01.T01
Gene Sequence

>MsG0880043164.01.T01

ATGGACAATTCATCAAATTTTGACTCAACTTCTTCTGTGGATCAAAATGATCATTCAATCAGTGAAACTCCTGAGTACTCTCCATTCAGTGGTGATTCTTTCGCGTATTGTCGGAGTAACTCTGAAGTATCAAACTTGTCTGAGGCTATTGATGATAATAGCTATGTTAGTGACCCTTCACCTTCACCATGGATGAATGTGAAACATGGAGCTGCTCTTTCAAGGTTAGGAATGAAGCAGAGAAAGCATTCATTGGGTGAGAAATCTGATGATCTTGATCTCTTGGAGTCAGCGACTGTATTTGGACAAAATTTGAAGTTGGAGCCTCTAAAACCAGAGAAGAAAGCTATGTGGAAAAGAGAAATGAGTTGTCTTATGTCTGTGTGTGATTACATAGTAGAATTTGCACCAACTGCACAATACTTGGATGATGGTACAATTGTGGAGATGATGACAAGTAGACCAAGGGCAGATATTTATATAAACCTTCCAGCTCTACAGAAGCTTGACACAATGCTCATAGAAATCTTTGATAGTTTCCAGGATACTGAATTTTGGTATGCAGAACAAGGAAGCATGTCAGGGAATTCGAACCGTAGTTCACATTCGAATGCAGGTTCGAAGGCAGGCTCGTTTCGAATTATTGCTCAAAGAAAAGATGAGAAATGGTGGTTGCCAGTTCCTTGTGTTCACACTGGTGGCCTCTCTGATAAGTCAAGGAAGCATTTGATTGAGAAAAGAGATTGTGCTAATCAAATTCATAAAGCAGCTATGGCAATAAATAGCAGTGTTCTTGCAGAGATGGACATTCCAGAAACATACATGGCAAATCTTCCTAAGAGTGGAAGATCAAGTCTAGGAGACACAATTTATCGGTATATGCATTCTGGAGACAAGTTCTCACCCGGCAACCTTCTTGACTGTCTCAAAATAAGAACTGAACATGAAGCACTTGAACTAGCAGATAGAGTTGAATCTTCCATGTACACATGGAGACGTAAATCTTGCCTAAGCCATTCAAAATCATCATGGAACAAAGTAAAGGAGCTTATGGCTGAAACTGACAATAGTGATAAAAACTATCTCTTAGCCGAGAGAGCTGAGACTTTATTATTTTTCTTGAAACAAAGATATCCTGAACTTTCACAAACCTCCTTGGACACATGCAAGATTCAATACAACCAGCAGGATGTAGGGAAAGCAGTACTAGAAAGCTACTCAAGAGTATTAGAAGGCTTAGCATTCAACATTGTTGCTTGGATTGAAGATGTTCTTTGTGCAGATAAATCTATGAGGAACTAA
Protein sequence

>MsG0880043164.01.T01

MDNSSNFDSTSSVDQNDHSISETPEYSPFSGDSFAYCRSNSEVSNLSEAIDDNSYVSDPSPSPWMNVKHGAALSRLGMKQRKHSLGEKSDDLDLLESATVFGQNLKLEPLKPEKKAMWKREMSCLMSVCDYIVEFAPTAQYLDDGTIVEMMTSRPRADIYINLPALQKLDTMLIEIFDSFQDTEFWYAEQGSMSGNSNRSSHSNAGSKAGSFRIIAQRKDEKWWLPVPCVHTGGLSDKSRKHLIEKRDCANQIHKAAMAINSSVLAEMDIPETYMANLPKSGRSSLGDTIYRYMHSGDKFSPGNLLDCLKIRTEHEALELADRVESSMYTWRRKSCLSHSKSSWNKVKELMAETDNSDKNYLLAERAETLLFFLKQRYPELSQTSLDTCKIQYNQQDVGKAVLESYSRVLEGLAFNIVAWIEDVLCADKSMRN*