AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043590.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043590.01.T01 MTR_8g038400 87.738 367 14 1 1 336 1 367 0.0 633
MsG0880043590.01.T01 MTR_3g017500 67.218 363 89 2 4 336 8 370 5.99e-169 474
MsG0880043590.01.T01 MTR_3g017500 68.644 354 81 2 13 336 47 400 1.04e-167 473
MsG0880043590.01.T01 MTR_8g088320 45.152 330 149 6 18 334 10 320 3.90e-100 298
MsG0880043590.01.T01 MTR_2g030230 44.923 325 155 5 18 334 19 327 1.91e-93 281
MsG0880043590.01.T01 MTR_3g067585 46.203 158 84 1 175 332 1 157 9.87e-40 138
MsG0880043590.01.T01 MTR_8g107340 40.625 160 94 1 175 334 17 175 2.85e-38 134
MsG0880043590.01.T01 MTR_2g011590 43.312 157 88 1 176 332 1 156 5.37e-38 133
MsG0880043590.01.T01 MTR_1g031650 42.581 155 87 2 179 332 6 159 1.11e-35 127
MsG0880043590.01.T01 MTR_6g069470 41.916 167 95 2 169 334 6 171 9.68e-34 122
MsG0880043590.01.T01 MTR_2g027100 43.312 157 88 1 175 330 1 157 2.63e-33 121
MsG0880043590.01.T01 MTR_4g084280 39.241 158 95 1 175 332 1 157 5.32e-31 115
MsG0880043590.01.T01 MTR_1g031650 40.984 122 71 1 211 332 2 122 2.08e-23 94.4
MsG0880043590.01.T01 MTR_2g080950 51.250 80 38 1 11 89 9 88 1.00e-20 93.2
MsG0880043590.01.T01 MTR_8g464390 51.250 80 38 1 11 89 9 88 1.76e-20 92.4
MsG0880043590.01.T01 MTR_6g080710 44.000 100 54 2 11 108 9 108 1.99e-20 89.7
MsG0880043590.01.T01 MTR_1g069000 48.649 74 37 1 18 91 5 77 3.13e-18 85.9
MsG0880043590.01.T01 MTR_7g099830 48.649 74 37 1 18 91 5 77 8.56e-18 84.3
MsG0880043590.01.T01 MTR_3g098680 40.594 101 56 2 27 123 507 607 8.92e-18 84.7
MsG0880043590.01.T01 MTR_8g100100 56.061 66 27 1 28 91 505 570 1.88e-17 84.0
MsG0880043590.01.T01 MTR_7g020860 44.554 101 52 3 28 126 513 611 1.97e-17 84.0
MsG0880043590.01.T01 MTR_8g100100 56.061 66 27 1 28 91 511 576 1.99e-17 84.0
MsG0880043590.01.T01 MTR_7g020860 44.554 101 52 3 28 126 513 611 2.24e-17 83.6
MsG0880043590.01.T01 MTR_8g067090 46.479 71 37 1 23 93 16 85 9.65e-17 80.9
MsG0880043590.01.T01 MTR_8g471120 46.479 71 37 1 23 93 16 85 9.65e-17 80.9
MsG0880043590.01.T01 MTR_8g067080 45.070 71 38 1 23 93 16 85 8.47e-16 78.2
MsG0880043590.01.T01 MTR_8g471110 45.070 71 38 1 23 93 16 85 8.47e-16 78.2
MsG0880043590.01.T01 MTR_8g067080 45.070 71 38 1 23 93 16 85 8.79e-16 78.2
MsG0880043590.01.T01 MTR_4g074170 50.000 64 30 1 28 89 490 553 7.54e-15 75.9
MsG0880043590.01.T01 MTR_1g008950 42.029 69 39 1 201 268 26 94 1.15e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043590.01.T01 AT3G07940 61.299 354 94 5 14 336 44 385 2.85e-147 420
MsG0880043590.01.T01 AT4G21160 42.735 351 166 4 5 336 3 337 1.87e-99 297
MsG0880043590.01.T01 AT4G21160 42.735 351 166 4 5 336 3 337 1.87e-99 297
MsG0880043590.01.T01 AT4G21160 42.735 351 166 4 5 336 3 337 1.87e-99 297
MsG0880043590.01.T01 AT4G21160 42.735 351 166 4 5 336 3 337 1.87e-99 297
MsG0880043590.01.T01 AT4G05330 44.412 340 171 5 7 336 5 336 1.14e-96 290
MsG0880043590.01.T01 AT4G05330 44.412 340 171 5 7 336 5 336 1.14e-96 290
MsG0880043590.01.T01 AT4G05330 45.338 311 136 7 44 336 7 301 3.49e-83 254
MsG0880043590.01.T01 AT3G07940 51.528 229 68 4 14 211 44 260 6.88e-69 216
MsG0880043590.01.T01 AT1G70790 44.444 153 84 1 179 330 6 158 2.71e-38 135
MsG0880043590.01.T01 AT1G70790 44.444 153 84 1 179 330 6 158 2.71e-38 135
MsG0880043590.01.T01 AT1G70790 44.444 153 84 1 179 330 6 158 2.71e-38 135
MsG0880043590.01.T01 AT1G70800 41.463 164 95 1 167 330 2 164 5.03e-38 134
MsG0880043590.01.T01 AT1G73580 41.875 160 92 1 175 334 4 162 3.05e-37 131
MsG0880043590.01.T01 AT1G66360 43.125 160 88 2 175 332 1 159 4.64e-36 129
MsG0880043590.01.T01 AT1G70810 40.506 158 93 1 175 332 1 157 1.36e-35 127
MsG0880043590.01.T01 AT5G37740 40.373 161 92 2 175 332 1 160 5.05e-33 120
MsG0880043590.01.T01 AT2G01540 40.523 153 90 1 179 330 6 158 6.70e-33 120
MsG0880043590.01.T01 AT3G17980 35.882 170 106 2 165 334 5 171 1.70e-32 119
MsG0880043590.01.T01 AT5G47710 39.623 159 95 1 175 332 1 159 2.16e-32 119
MsG0880043590.01.T01 AT5G47710 39.623 159 95 1 175 332 1 159 2.16e-32 119
MsG0880043590.01.T01 AT5G47710 39.623 159 95 1 175 332 1 159 2.16e-32 119
MsG0880043590.01.T01 AT5G47710 39.623 159 95 1 175 332 1 159 2.16e-32 119
MsG0880043590.01.T01 AT1G48590 39.429 175 99 4 162 334 26 195 3.83e-32 119
MsG0880043590.01.T01 AT1G48590 40.123 162 92 3 175 334 6 164 6.73e-32 117
MsG0880043590.01.T01 AT1G48590 40.123 162 92 3 175 334 6 164 6.73e-32 117
MsG0880043590.01.T01 AT1G23140 37.342 158 98 1 175 332 1 157 1.26e-30 114
MsG0880043590.01.T01 AT5G37740 38.012 171 92 3 175 332 1 170 5.04e-30 113
MsG0880043590.01.T01 AT1G70790 42.857 119 67 1 213 330 3 121 7.80e-24 95.9
MsG0880043590.01.T01 AT3G17660 39.437 142 72 5 11 139 9 149 8.44e-22 91.3
MsG0880043590.01.T01 AT3G17660 42.857 119 61 4 11 123 9 126 2.25e-21 91.7
MsG0880043590.01.T01 AT5G54310 50.000 82 40 1 11 91 9 90 3.49e-21 94.4
MsG0880043590.01.T01 AT3G17660 42.857 119 61 4 11 123 9 126 4.43e-21 90.9
MsG0880043590.01.T01 AT5G61980 52.500 80 36 1 12 89 493 572 1.89e-18 87.0
MsG0880043590.01.T01 AT5G13300 56.250 64 26 1 28 89 512 575 3.61e-17 83.2
MsG0880043590.01.T01 AT1G48590 29.480 173 87 3 162 334 26 163 4.26e-17 78.2
MsG0880043590.01.T01 AT1G60860 39.516 124 62 4 28 143 367 485 8.19e-17 82.0
MsG0880043590.01.T01 AT1G60860 39.516 124 62 4 28 143 307 425 8.98e-17 81.6
MsG0880043590.01.T01 AT1G60860 39.516 124 62 4 28 143 478 596 9.84e-17 81.6
MsG0880043590.01.T01 AT2G37550 44.737 76 41 1 18 93 5 79 1.66e-16 80.5
MsG0880043590.01.T01 AT2G37550 44.737 76 41 1 18 93 5 79 1.66e-16 80.5
MsG0880043590.01.T01 AT1G10870 54.688 64 27 1 28 89 478 541 2.63e-16 80.5
MsG0880043590.01.T01 AT1G10870 54.688 64 27 1 28 89 478 541 2.68e-16 80.5
MsG0880043590.01.T01 AT3G53710 44.737 76 41 1 18 93 5 79 3.68e-16 79.3
MsG0880043590.01.T01 AT3G53710 44.737 76 41 1 18 93 5 79 3.68e-16 79.3
MsG0880043590.01.T01 AT3G53710 44.737 76 41 1 18 93 5 79 3.68e-16 79.3
MsG0880043590.01.T01 AT2G35210 46.479 71 37 1 23 93 16 85 4.70e-16 78.6
MsG0880043590.01.T01 AT5G46750 46.479 71 37 1 23 93 16 85 7.06e-16 78.6
MsG0880043590.01.T01 AT2G35210 46.479 71 37 1 23 93 16 85 8.54e-16 78.2
MsG0880043590.01.T01 AT3G17660 50.769 65 31 1 11 74 9 73 2.06e-15 74.7
MsG0880043590.01.T01 AT4G17890 45.070 71 38 1 23 93 19 88 2.93e-15 76.6
MsG0880043590.01.T01 AT4G17890 45.070 71 38 1 23 93 19 88 3.81e-15 76.3

Find 61 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTGAACTTACCACTTTA+AGG 0.082747 8:-27385073 None:intergenic
CCCTTATGTCATCCTTTCTT+TGG 0.175750 8:+27384860 MsG0880043590.01.T01:CDS
ACTAACACTTACACCCATTT+TGG 0.222938 8:-27383313 None:intergenic
TATCCAAGCTATTGAATTAG+AGG 0.240207 8:-27386093 None:intergenic
TGAATTTGTTGGGTTGATTA+AGG 0.275476 8:+27384785 MsG0880043590.01.T01:CDS
GCGGAACTCCAGAGCCAAAA+TGG 0.294574 8:+27383299 MsG0880043590.01.T01:CDS
CCTTATGTCATCCTTTCTTT+GGG 0.326292 8:+27384861 MsG0880043590.01.T01:CDS
TTTATTTGCATCAAGTGTTC+TGG 0.328020 8:+27383468 MsG0880043590.01.T01:CDS
GGAACAATTTGAATCCAGTT+TGG 0.337343 8:+27385009 MsG0880043590.01.T01:CDS
AATTGAACTTACCACTTTAA+GGG 0.365775 8:-27385072 None:intergenic
TCTGGCATACATAGAAGTTT+AGG 0.375842 8:+27383486 MsG0880043590.01.T01:CDS
GCAGGTATGGTTGAATTTGT+TGG 0.389459 8:+27384774 MsG0880043590.01.T01:CDS
AACATCAGATCTTCAAGTCT+TGG 0.403688 8:+27383441 MsG0880043590.01.T01:intron
CAGGTATGGTTGAATTTGTT+GGG 0.410672 8:+27384775 MsG0880043590.01.T01:CDS
AGTTGATGCATTAGAGAAGT+TGG 0.412436 8:+27384108 MsG0880043590.01.T01:CDS
TGATGCATCAAGCTGGAAAC+AGG 0.430214 8:+27383263 MsG0880043590.01.T01:CDS
TTAAGGGGAGGAATGTTCTC+TGG 0.431886 8:-27385056 None:intergenic
CCTGGTATGAAAGATGTATC+AGG 0.434654 8:+27382860 MsG0880043590.01.T01:CDS
CAAGGAAGAAGTGTATCATT+AGG 0.434906 8:+27384393 MsG0880043590.01.T01:CDS
ATTAGACTTTCATTCCAAAC+TGG 0.450148 8:-27385023 None:intergenic
TGGCTCTGGAGTTCCGCAAT+CGG 0.472934 8:-27383293 None:intergenic
TATGCAGCTTGTATATGATA+AGG 0.474219 8:+27385819 MsG0880043590.01.T01:intron
CCCAAAGAAAGGATGACATA+AGG 0.480442 8:-27384861 None:intergenic
TTTACTGTTATAGGCAGGTA+TGG 0.481028 8:+27384761 MsG0880043590.01.T01:intron
GATTATTAGGTACACACAAA+AGG 0.491996 8:+27383230 MsG0880043590.01.T01:intron
TTCAAAGAAGAGTACCTCAT+TGG 0.502303 8:+27384542 MsG0880043590.01.T01:CDS
TCACTTGGTGTCCCAAAGAA+AGG 0.502315 8:-27384872 None:intergenic
GTTGATGCATTAGAGAAGTT+GGG 0.502430 8:+27384109 MsG0880043590.01.T01:CDS
CCAAAGAAAGGATGACATAA+GGG 0.504098 8:-27384860 None:intergenic
CGGAACTCCAGAGCCAAAAT+GGG 0.516197 8:+27383300 MsG0880043590.01.T01:CDS
ATTAAGGTTAAAGTTATGAA+AGG 0.516242 8:+27384801 MsG0880043590.01.T01:CDS
CTTCCTTGAGATGGTACAAA+CGG 0.523084 8:-27384378 None:intergenic
TCAAATCTGATGCATCAAGC+TGG 0.524021 8:+27383256 MsG0880043590.01.T01:CDS
CTCGAGCTGCATGGACTCGT+TGG 0.525843 8:-27385932 None:intergenic
TCCTCAAGGCATGAAAGTCC+TGG 0.540402 8:+27382842 MsG0880043590.01.T01:CDS
CATCATTGAAGCTAGATCAA+TGG 0.540544 8:+27384074 MsG0880043590.01.T01:CDS
TGAGGATCTACAGTTTATGA+TGG 0.542216 8:+27384332 MsG0880043590.01.T01:CDS
GAACATTCCTCCCCTTAAAG+TGG 0.545423 8:+27385061 MsG0880043590.01.T01:CDS
AAGGATGACATAAGGGTCAC+TGG 0.548413 8:-27384853 None:intergenic
GTGTCATATCTCTTGATGAC+GGG 0.550663 8:+27385995 MsG0880043590.01.T01:CDS
ATTGAACTTACCACTTTAAG+GGG 0.551654 8:-27385071 None:intergenic
CCTGATACATCTTTCATACC+AGG 0.553792 8:-27382860 None:intergenic
GCGCTGACAAGACATCATAT+CGG 0.569887 8:+27384471 MsG0880043590.01.T01:CDS
TCACTACATCTCTAATAGCT+AGG 0.572515 8:-27384830 None:intergenic
TACAAATTTCTCGAGCTGCA+TGG 0.578821 8:-27385941 None:intergenic
CGAGAAATTTGTAGCAAGCA+AGG 0.579213 8:+27385951 MsG0880043590.01.T01:CDS
GAACTTACCACTTTAAGGGG+AGG 0.583237 8:-27385068 None:intergenic
AGACTACAGAATGTTGAAAG+AGG 0.587938 8:+27386042 MsG0880043590.01.T01:CDS
GATACACTTCTTCCTTGAGA+TGG 0.597028 8:-27384387 None:intergenic
TAAATGAAACATTACCAATG+AGG 0.599438 8:-27384556 None:intergenic
TGTCCGTTTGTACCATCTCA+AGG 0.604387 8:+27384375 MsG0880043590.01.T01:CDS
GACATGCATTCCGAAAGAGC+TGG 0.610586 8:+27384493 MsG0880043590.01.T01:CDS
AAAGGCTAGAAATGTCCTCA+AGG 0.614230 8:+27382828 None:intergenic
TTTAGGAGTCCACATATCAA+AGG 0.615847 8:+27383503 MsG0880043590.01.T01:CDS
GACAACAGTCTTGTTAGAGA+TGG 0.617464 8:+27385973 MsG0880043590.01.T01:CDS
ACCAGGACTTTCATGCCTTG+AGG 0.620692 8:-27382843 None:intergenic
AATTGCATACGAGAAATCTA+CGG 0.625889 8:+27385909 MsG0880043590.01.T01:CDS
GCAATTGCAGCTAAAACTAG+TGG 0.635267 8:-27385892 None:intergenic
GATGCATTAGAGAAGTTGGG+TGG 0.652196 8:+27384112 MsG0880043590.01.T01:CDS
GGTGTCATATCTCTTGATGA+CGG 0.662024 8:+27385994 MsG0880043590.01.T01:CDS
GTGTAACATGAAGAACTACT+CGG 0.684501 8:-27384417 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATATATATAGACTT+CGG - Chr8:27385189-27385208 None:intergenic 10.0%
!! TATAACAAAAGATAAAATAT+AGG - Chr8:27383918-27383937 None:intergenic 10.0%
!! ATATAATGAAAATTTAGTAG+AGG + Chr8:27382967-27382986 MsG0880043590.01.T01:intron 15.0%
!! ATTAATCATTCTATTATTCT+GGG - Chr8:27382911-27382930 None:intergenic 15.0%
!! TAATTTAATATCATCTTGAA+AGG + Chr8:27383179-27383198 MsG0880043590.01.T01:intron 15.0%
!! TACCTAATAATCAATAAAAA+AGG - Chr8:27383222-27383241 None:intergenic 15.0%
!! TTATCCAATTCTTAAAAATT+GGG + Chr8:27385294-27385313 MsG0880043590.01.T01:intron 15.0%
!! TTTATCCAATTCTTAAAAAT+TGG + Chr8:27385293-27385312 MsG0880043590.01.T01:intron 15.0%
!!! TTTGGTTTTTTTATATTACT+TGG - Chr8:27384175-27384194 None:intergenic 15.0%
!! AAAATTATCTCCTAATCTAA+TGG + Chr8:27383089-27383108 MsG0880043590.01.T01:intron 20.0%
!! ATTAAGGTTAAAGTTATGAA+AGG + Chr8:27384801-27384820 MsG0880043590.01.T01:CDS 20.0%
!! ATTTATAGATTAACAGAAAC+TGG - Chr8:27385103-27385122 None:intergenic 20.0%
!! GAAAAATATGAATAAAGTAG+AGG + Chr8:27384918-27384937 MsG0880043590.01.T01:intron 20.0%
!! GATTAATCATTCTATTATTC+TGG - Chr8:27382912-27382931 None:intergenic 20.0%
!! TGTTAAAAATGCTAACAAAT+TGG - Chr8:27383355-27383374 None:intergenic 20.0%
!! TTAAGAATTGGATAAAGATT+GGG - Chr8:27385289-27385308 None:intergenic 20.0%
!! TTAATCATTCTATTATTCTG+GGG - Chr8:27382910-27382929 None:intergenic 20.0%
!! TTGATTAGATTTATTGTGTT+TGG + Chr8:27385791-27385810 MsG0880043590.01.T01:intron 20.0%
!! TTGCATCAATTGATTAAAAA+AGG - Chr8:27384629-27384648 None:intergenic 20.0%
!! TTGTTACTATTTACTGTTAT+AGG + Chr8:27384752-27384771 MsG0880043590.01.T01:intron 20.0%
!! TTTAAGAATTGGATAAAGAT+TGG - Chr8:27385290-27385309 None:intergenic 20.0%
!!! ACATTCTTAACATGTTTTTA+GGG + Chr8:27383730-27383749 MsG0880043590.01.T01:intron 20.0%
!!! AGCCTTTTTTATTGATTATT+AGG + Chr8:27383217-27383236 MsG0880043590.01.T01:intron 20.0%
!!! ATTGCTTGATACTTTTTAAA+TGG + Chr8:27385759-27385778 MsG0880043590.01.T01:intron 20.0%
!!! ATTTTCAACTGATGATTTTA+TGG + Chr8:27385846-27385865 MsG0880043590.01.T01:CDS 20.0%
!!! ATTTTTCAGGAAAAAATATG+AGG + Chr8:27384314-27384333 MsG0880043590.01.T01:intron 20.0%
!!! TTCTATTTTTATGTTTTGTG+TGG + Chr8:27384254-27384273 MsG0880043590.01.T01:intron 20.0%
!!! TTTTAGTTACCTGATATATT+CGG - Chr8:27384224-27384243 None:intergenic 20.0%
!!! TTTTCAACTGATGATTTTAT+GGG + Chr8:27385847-27385866 MsG0880043590.01.T01:CDS 20.0%
!!! TTTTTTCCTGAAAAATCATT+AGG - Chr8:27384310-27384329 None:intergenic 20.0%
! AAAATCCAAATCCAAAACAA+CGG - Chr8:27385240-27385259 None:intergenic 25.0%
! AAACTCTATCAACTATATGT+TGG - Chr8:27385383-27385402 None:intergenic 25.0%
! AACTCTATCAACTATATGTT+GGG - Chr8:27385382-27385401 None:intergenic 25.0%
! AATTAGTAAGAAGAAACATC+TGG - Chr8:27385655-27385674 None:intergenic 25.0%
! AATTGAACTTACCACTTTAA+GGG - Chr8:27385075-27385094 None:intergenic 25.0%
! AGAAAAATACCTTTGATATG+TGG - Chr8:27383515-27383534 None:intergenic 25.0%
! AGGACATTTCTTAATAACAA+TGG - Chr8:27384290-27384309 None:intergenic 25.0%
! ATAATATGAACTACACATAG+AGG - Chr8:27385615-27385634 None:intergenic 25.0%
! ATCAATAAAAAAGGCTTATG+AGG - Chr8:27383213-27383232 None:intergenic 25.0%
! ATCTGTAATAGTAAAAGATG+TGG - Chr8:27384052-27384071 None:intergenic 25.0%
! GTGTAGTTCATATTATTGAA+GGG + Chr8:27385619-27385638 MsG0880043590.01.T01:intron 25.0%
! TAAAGTAGAGGAAATGAAAA+AGG + Chr8:27384930-27384949 MsG0880043590.01.T01:intron 25.0%
! TAAATGAAACATTACCAATG+AGG - Chr8:27384559-27384578 None:intergenic 25.0%
! TAACACTTATGTCCAAATAT+CGG + Chr8:27385524-27385543 MsG0880043590.01.T01:intron 25.0%
! TAAGTGTTAAAATCTCACAT+CGG - Chr8:27385513-27385532 None:intergenic 25.0%
! TAATCATTCTATTATTCTGG+GGG - Chr8:27382909-27382928 None:intergenic 25.0%
! TACATAAGCACTTATATGAT+AGG + Chr8:27383949-27383968 MsG0880043590.01.T01:intron 25.0%
! TGTGTAGTTCATATTATTGA+AGG + Chr8:27385618-27385637 MsG0880043590.01.T01:intron 25.0%
! TTAAGATATCTCATACTCAA+AGG + Chr8:27383676-27383695 MsG0880043590.01.T01:intron 25.0%
! TTAATATTTGTTCTTGCAGT+CGG + Chr8:27384968-27384987 MsG0880043590.01.T01:intron 25.0%
!! AAATGTCCTAATGATTTTTC+AGG + Chr8:27384301-27384320 MsG0880043590.01.T01:intron 25.0%
!! CACATTCTTAACATGTTTTT+AGG + Chr8:27383729-27383748 MsG0880043590.01.T01:intron 25.0%
!! TATAATTTGAAACTCTTGAC+AGG - Chr8:27385127-27385146 None:intergenic 25.0%
!!! ACAACCCAATTTTTAAGAAT+TGG - Chr8:27385301-27385320 None:intergenic 25.0%
!!! TAGGAGATAATTTTTTTCTC+CGG - Chr8:27383083-27383102 None:intergenic 25.0%
!!! TATTTTTATGTTTTGTGTGG+AGG + Chr8:27384257-27384276 MsG0880043590.01.T01:intron 25.0%
AAATGCTTATGACAGCAAAA+AGG - Chr8:27383779-27383798 None:intergenic 30.0%
AAGAGATAAGAATACTCACT+TGG - Chr8:27384890-27384909 None:intergenic 30.0%
AATCATTCTATTATTCTGGG+GGG - Chr8:27382908-27382927 None:intergenic 30.0%
AATTCCATCTAAAAGTCGAT+AGG + Chr8:27383699-27383718 MsG0880043590.01.T01:intron 30.0%
AATTGCATACGAGAAATCTA+CGG + Chr8:27385909-27385928 MsG0880043590.01.T01:CDS 30.0%
ACCATCTTAGAATTTGTGTA+GGG + Chr8:27385406-27385425 MsG0880043590.01.T01:intron 30.0%
ACTGAAAATGAGTTTAGAAG+TGG - Chr8:27385479-27385498 None:intergenic 30.0%
AGGATTGGAAATGAAAAAGA+AGG - Chr8:27385217-27385236 None:intergenic 30.0%
ATTAGACTTTCATTCCAAAC+TGG - Chr8:27385026-27385045 None:intergenic 30.0%
ATTGAACTTACCACTTTAAG+GGG - Chr8:27385074-27385093 None:intergenic 30.0%
CAATTGAACTTACCACTTTA+AGG - Chr8:27385076-27385095 None:intergenic 30.0%
CTAAGACTTAATCTTGTAGA+TGG - Chr8:27383158-27383177 None:intergenic 30.0%
GATTATTAGGTACACACAAA+AGG + Chr8:27383230-27383249 MsG0880043590.01.T01:intron 30.0%
GGATTGGAAATGAAAAAGAA+GGG - Chr8:27385216-27385235 None:intergenic 30.0%
GTAATGTACAATGTTGTGTA+TGG + Chr8:27383017-27383036 MsG0880043590.01.T01:intron 30.0%
TACCATCTTAGAATTTGTGT+AGG + Chr8:27385405-27385424 MsG0880043590.01.T01:intron 30.0%
TACTATTTACTGTTATAGGC+AGG + Chr8:27384756-27384775 MsG0880043590.01.T01:intron 30.0%
TATGCAGCTTGTATATGATA+AGG + Chr8:27385819-27385838 MsG0880043590.01.T01:intron 30.0%
TTAATCCCCTTGATCAAAAT+CGG + Chr8:27384002-27384021 MsG0880043590.01.T01:intron 30.0%
TTTATTTGCATCAAGTGTTC+TGG + Chr8:27383468-27383487 MsG0880043590.01.T01:CDS 30.0%
! AAATTGGTTCCAACGAAAAT+CGG - Chr8:27383339-27383358 None:intergenic 30.0%
! ATTTTCTCACATTTCGACTT+TGG + Chr8:27385255-27385274 MsG0880043590.01.T01:intron 30.0%
!! TGAATTTGTTGGGTTGATTA+AGG + Chr8:27384785-27384804 MsG0880043590.01.T01:CDS 30.0%
!!! ATTTTTTTCTCCGGATCTAA+AGG - Chr8:27383074-27383093 None:intergenic 30.0%
!!! TAAGTACCGATTTTGATCAA+GGG - Chr8:27384011-27384030 None:intergenic 30.0%
!!! TTAAGTACCGATTTTGATCA+AGG - Chr8:27384012-27384031 None:intergenic 30.0%
AACATCAGATCTTCAAGTCT+TGG + Chr8:27383441-27383460 MsG0880043590.01.T01:intron 35.0%
AAGAGGAAAGAAAGTAATCG+AGG - Chr8:27385588-27385607 None:intergenic 35.0%
AGACTACAGAATGTTGAAAG+AGG + Chr8:27386042-27386061 MsG0880043590.01.T01:CDS 35.0%
CATCATTGAAGCTAGATCAA+TGG + Chr8:27384074-27384093 MsG0880043590.01.T01:CDS 35.0%
CCAAAGAAAGGATGACATAA+GGG - Chr8:27384863-27384882 None:intergenic 35.0%
CCTTATGTCATCCTTTCTTT+GGG + Chr8:27384861-27384880 MsG0880043590.01.T01:CDS 35.0%
GGAACAATTTGAATCCAGTT+TGG + Chr8:27385009-27385028 MsG0880043590.01.T01:CDS 35.0%
GTGTAACATGAAGAACTACT+CGG - Chr8:27384420-27384439 None:intergenic 35.0%
GTTGATGCATTAGAGAAGTT+GGG + Chr8:27384109-27384128 MsG0880043590.01.T01:CDS 35.0%
TCACTACATCTCTAATAGCT+AGG - Chr8:27384833-27384852 None:intergenic 35.0%
TCTGGCATACATAGAAGTTT+AGG + Chr8:27383486-27383505 MsG0880043590.01.T01:CDS 35.0%
TGAGGATCTACAGTTTATGA+TGG + Chr8:27384332-27384351 MsG0880043590.01.T01:CDS 35.0%
TTTACTGTTATAGGCAGGTA+TGG + Chr8:27384761-27384780 MsG0880043590.01.T01:intron 35.0%
TTTAGGAGTCCACATATCAA+AGG + Chr8:27383503-27383522 MsG0880043590.01.T01:CDS 35.0%
! AAAACTGGCTCATAAGGTAA+AGG + Chr8:27385446-27385465 MsG0880043590.01.T01:intron 35.0%
! ACCCTACACAAATTCTAAGA+TGG - Chr8:27385410-27385429 None:intergenic 35.0%
! ACTAACACTTACACCCATTT+TGG - Chr8:27383316-27383335 None:intergenic 35.0%
! AGTTGATGCATTAGAGAAGT+TGG + Chr8:27384108-27384127 MsG0880043590.01.T01:CDS 35.0%
! CAAGGAAGAAGTGTATCATT+AGG + Chr8:27384393-27384412 MsG0880043590.01.T01:CDS 35.0%
! CAGGTATGGTTGAATTTGTT+GGG + Chr8:27384775-27384794 MsG0880043590.01.T01:CDS 35.0%
!! CTTATGAGCCAGTTTTGTAA+GGG - Chr8:27385442-27385461 None:intergenic 35.0%
!! TTCAAAGAAGAGTACCTCAT+TGG + Chr8:27384542-27384561 MsG0880043590.01.T01:CDS 35.0%
!!! AAGTACCGATTTTGATCAAG+GGG - Chr8:27384010-27384029 None:intergenic 35.0%
AATCCAAAACAACGGAGGAT+TGG - Chr8:27385232-27385251 None:intergenic 40.0%
ATCCAAATCCAAAACAACGG+AGG - Chr8:27385237-27385256 None:intergenic 40.0%
CCCAAAGAAAGGATGACATA+AGG - Chr8:27384864-27384883 None:intergenic 40.0%
CCCTTATGTCATCCTTTCTT+TGG + Chr8:27384860-27384879 MsG0880043590.01.T01:CDS 40.0%
CCTGATACATCTTTCATACC+AGG - Chr8:27382863-27382882 None:intergenic 40.0%
CCTGGTATGAAAGATGTATC+AGG + Chr8:27382860-27382879 MsG0880043590.01.T01:CDS 40.0%
CGAGAAATTTGTAGCAAGCA+AGG + Chr8:27385951-27385970 MsG0880043590.01.T01:CDS 40.0%
CGGTAAAAACACGCGTTATA+AGG + Chr8:27384988-27385007 MsG0880043590.01.T01:CDS 40.0%
CTACACATAGAGGAGTAAAG+AGG - Chr8:27385605-27385624 None:intergenic 40.0%
CTTCCTTGAGATGGTACAAA+CGG - Chr8:27384381-27384400 None:intergenic 40.0%
GATACACTTCTTCCTTGAGA+TGG - Chr8:27384390-27384409 None:intergenic 40.0%
GCAATTGCAGCTAAAACTAG+TGG - Chr8:27385895-27385914 None:intergenic 40.0%
GCAGGTATGGTTGAATTTGT+TGG + Chr8:27384774-27384793 MsG0880043590.01.T01:CDS 40.0%
GTTACCTAGTTGAGCAACTT+TGG - Chr8:27382994-27383013 None:intergenic 40.0%
TAACACGACCCTTACAAAAC+TGG + Chr8:27385431-27385450 MsG0880043590.01.T01:intron 40.0%
TACAAATTTCTCGAGCTGCA+TGG - Chr8:27385944-27385963 None:intergenic 40.0%
TCAAATCTGATGCATCAAGC+TGG + Chr8:27383256-27383275 MsG0880043590.01.T01:CDS 40.0%
TGACGCTGTAATCCGATATT+TGG - Chr8:27385539-27385558 None:intergenic 40.0%
TGCTGTAAAGCCTTTAGATC+CGG + Chr8:27383061-27383080 MsG0880043590.01.T01:intron 40.0%
! AATCGAGGTTTTCTGAGTCA+AGG - Chr8:27385573-27385592 None:intergenic 40.0%
! AGTGTTAGTCCGATTTTCGT+TGG + Chr8:27383327-27383346 MsG0880043590.01.T01:intron 40.0%
! CCTTACAAAACTGGCTCATA+AGG + Chr8:27385440-27385459 MsG0880043590.01.T01:intron 40.0%
! CTTTTCTTGTCCAGCTCTTT+CGG - Chr8:27384506-27384525 None:intergenic 40.0%
! GGTGTCATATCTCTTGATGA+CGG + Chr8:27385994-27386013 MsG0880043590.01.T01:CDS 40.0%
! GTGTCATATCTCTTGATGAC+GGG + Chr8:27385995-27386014 MsG0880043590.01.T01:CDS 40.0%
! TTTCCAATCCTCCGTTGTTT+TGG + Chr8:27385226-27385245 MsG0880043590.01.T01:intron 40.0%
!! CCTTATGAGCCAGTTTTGTA+AGG - Chr8:27385443-27385462 None:intergenic 40.0%
!! GACAACAGTCTTGTTAGAGA+TGG + Chr8:27385973-27385992 MsG0880043590.01.T01:CDS 40.0%
!!! ATCCTCCGTTGTTTTGGATT+TGG + Chr8:27385232-27385251 MsG0880043590.01.T01:intron 40.0%
!!! CATGCCTATCGACTTTTAGA+TGG - Chr8:27383706-27383725 None:intergenic 40.0%
AAGGATGACATAAGGGTCAC+TGG - Chr8:27384856-27384875 None:intergenic 45.0%
AGGACCAAAGTTGCTCAACT+AGG + Chr8:27382987-27383006 MsG0880043590.01.T01:intron 45.0%
CAACTATATGTTGGGCCACT+CGG - Chr8:27385374-27385393 None:intergenic 45.0%
CCAGACATCACATGAGATAC+TGG + Chr8:27383610-27383629 MsG0880043590.01.T01:intron 45.0%
CCAGTATCTCATGTGATGTC+TGG - Chr8:27383613-27383632 None:intergenic 45.0%
GAACATTCCTCCCCTTAAAG+TGG + Chr8:27385061-27385080 MsG0880043590.01.T01:CDS 45.0%
GATGCATTAGAGAAGTTGGG+TGG + Chr8:27384112-27384131 MsG0880043590.01.T01:CDS 45.0%
TGATGCATCAAGCTGGAAAC+AGG + Chr8:27383263-27383282 MsG0880043590.01.T01:CDS 45.0%
TGTCCGTTTGTACCATCTCA+AGG + Chr8:27384375-27384394 MsG0880043590.01.T01:CDS 45.0%
TTAAGGGGAGGAATGTTCTC+TGG - Chr8:27385059-27385078 None:intergenic 45.0%
! AACATCACGCTCTAGACATC+TGG + Chr8:27385340-27385359 MsG0880043590.01.T01:intron 45.0%
! GAACTTACCACTTTAAGGGG+AGG - Chr8:27385071-27385090 None:intergenic 45.0%
! GCGCTGACAAGACATCATAT+CGG + Chr8:27384471-27384490 MsG0880043590.01.T01:CDS 45.0%
! TCGATCGAGGTATGTGGTTT+TGG - Chr8:27384193-27384212 None:intergenic 45.0%
!! AAGAGCGCTCCGAATATATC+AGG + Chr8:27384212-27384231 MsG0880043590.01.T01:intron 45.0%
!! TCACTTGGTGTCCCAAAGAA+AGG - Chr8:27384875-27384894 None:intergenic 45.0%
!!! AACAGGTTTTGTGCCGATTG+CGG + Chr8:27383280-27383299 MsG0880043590.01.T01:CDS 45.0%
!!! ACTTACACCCATTTTGGCTC+TGG - Chr8:27383310-27383329 None:intergenic 45.0%
ACCAGGACTTTCATGCCTTG+AGG - Chr8:27382846-27382865 None:intergenic 50.0%
CGCTGCAGAGCCATTAGATT+AGG - Chr8:27383102-27383121 None:intergenic 50.0%
CGGAACTCCAGAGCCAAAAT+GGG + Chr8:27383300-27383319 MsG0880043590.01.T01:CDS 50.0%
GACATGCATTCCGAAAGAGC+TGG + Chr8:27384493-27384512 MsG0880043590.01.T01:CDS 50.0%
TCCTCAAGGCATGAAAGTCC+TGG + Chr8:27382842-27382861 MsG0880043590.01.T01:CDS 50.0%
CGCTCTTCGATCGAGGTATG+TGG - Chr8:27384199-27384218 None:intergenic 55.0%
GCGGAACTCCAGAGCCAAAA+TGG + Chr8:27383299-27383318 MsG0880043590.01.T01:CDS 55.0%
!! TGGCTCTGGAGTTCCGCAAT+CGG - Chr8:27383296-27383315 None:intergenic 55.0%
CTCGAGCTGCATGGACTCGT+TGG - Chr8:27385935-27385954 None:intergenic 60.0%
! CATCTGGAGCGTGATCCGAG+TGG + Chr8:27385356-27385375 MsG0880043590.01.T01:intron 60.0%
! TTCGGAGCGCTCTTCGATCG+AGG - Chr8:27384206-27384225 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 27382839 27386107 27382839 ID=MsG0880043590.01;Name=MsG0880043590.01
Chr8 mRNA 27382839 27386107 27382839 ID=MsG0880043590.01.T01;Parent=MsG0880043590.01;Name=MsG0880043590.01.T01;_AED=0.37;_eAED=0.38;_QI=0|0|0|1|1|1|8|0|336
Chr8 exon 27382839 27382881 27382839 ID=MsG0880043590.01.T01:exon:8674;Parent=MsG0880043590.01.T01
Chr8 exon 27383239 27383323 27383239 ID=MsG0880043590.01.T01:exon:8675;Parent=MsG0880043590.01.T01
Chr8 exon 27383449 27383524 27383449 ID=MsG0880043590.01.T01:exon:8676;Parent=MsG0880043590.01.T01
Chr8 exon 27384070 27384140 27384070 ID=MsG0880043590.01.T01:exon:8677;Parent=MsG0880043590.01.T01
Chr8 exon 27384323 27384563 27384323 ID=MsG0880043590.01.T01:exon:8678;Parent=MsG0880043590.01.T01
Chr8 exon 27384774 27384890 27384774 ID=MsG0880043590.01.T01:exon:8679;Parent=MsG0880043590.01.T01
Chr8 exon 27384987 27385082 27384987 ID=MsG0880043590.01.T01:exon:8680;Parent=MsG0880043590.01.T01
Chr8 exon 27385826 27386107 27385826 ID=MsG0880043590.01.T01:exon:8681;Parent=MsG0880043590.01.T01
Chr8 CDS 27382839 27382881 27382839 ID=MsG0880043590.01.T01:cds;Parent=MsG0880043590.01.T01
Chr8 CDS 27383239 27383323 27383239 ID=MsG0880043590.01.T01:cds;Parent=MsG0880043590.01.T01
Chr8 CDS 27383449 27383524 27383449 ID=MsG0880043590.01.T01:cds;Parent=MsG0880043590.01.T01
Chr8 CDS 27384070 27384140 27384070 ID=MsG0880043590.01.T01:cds;Parent=MsG0880043590.01.T01
Chr8 CDS 27384323 27384563 27384323 ID=MsG0880043590.01.T01:cds;Parent=MsG0880043590.01.T01
Chr8 CDS 27384774 27384890 27384774 ID=MsG0880043590.01.T01:cds;Parent=MsG0880043590.01.T01
Chr8 CDS 27384987 27385082 27384987 ID=MsG0880043590.01.T01:cds;Parent=MsG0880043590.01.T01
Chr8 CDS 27385826 27386107 27385826 ID=MsG0880043590.01.T01:cds;Parent=MsG0880043590.01.T01
Gene Sequence

>MsG0880043590.01.T01

ATGTCCTCAAGGCATGAAAGTCCTGGTATGAAAGATGTATCAGGTACACACAAAAGGCTATCAAATCTGATGCATCAAGCTGGAAACAGGTTTTGTGCCGATTGCGGAACTCCAGAGCCAAAATGGGTATCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCTGGCATACATAGAAGTTTAGGAGTCCACATATCAAAGATTGCATCATTGAAGCTAGATCAATGGTCAGATGAACAAGTTGATGCATTAGAGAAGTTGGGTGGAAATACGAAAAAATATGAGGATCTACAGTTTATGATGGAGAGTGATGAGAATTCATCATGTCCGTTTGTACCATCTCAAGGAAGAAGTGTATCATTAGGTCCGAGTAGTTCTTCATGTTACACTTATCATATTGACAACAAAAAATACGACAAAGCGCTGACAAGACATCATATCGGACATGCATTCCGAAAGAGCTGGACAAGAAAAGATTCTGAGCACAAGTGTTCAAAGAAGAGTACCTCATTGGCAGGTATGGTTGAATTTGTTGGGTTGATTAAGGTTAAAGTTATGAAAGGCACTCACCTAGCTATTAGAGATGTAGTGACCAGTGACCCTTATGTCATCCTTTCTTTGGGACACCAATCGGTAAAAACACGCGTTATAAGGAACAATTTGAATCCAGTTTGGAATGAAAGTCTAATGCTATCAATTCCAGAGAACATTCCTCCCCTTAAAGTGCTTGTATATGATAAGGATACATTTTCAACTGATGATTTTATGGGTGAAGCTGAAATAGACATTCAACCACTAGTTTTAGCTGCAATTGCATACGAGAAATCTACGGCCAACGAGTCCATGCAGCTCGAGAAATTTGTAGCAAGCAAGGACAACAGTCTTGTTAGAGATGGTGTCATATCTCTTGATGACGGGAAGATCAAACAAGAAATCTCAGTGAGACTACAGAATGTTGAAAGAGGTGTTCTTGAGATTGAGCTTGAGTGTGTTCCTCTAATTCAATAG

Protein sequence

>MsG0880043590.01.T01

MSSRHESPGMKDVSGTHKRLSNLMHQAGNRFCADCGTPEPKWVSSSLGVFICIKCSGIHRSLGVHISKIASLKLDQWSDEQVDALEKLGGNTKKYEDLQFMMESDENSSCPFVPSQGRSVSLGPSSSSCYTYHIDNKKYDKALTRHHIGHAFRKSWTRKDSEHKCSKKSTSLAGMVEFVGLIKVKVMKGTHLAIRDVVTSDPYVILSLGHQSVKTRVIRNNLNPVWNESLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVLAAIAYEKSTANESMQLEKFVASKDNSLVRDGVISLDDGKIKQEISVRLQNVERGVLEIELECVPLIQ*