AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880044089.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044089.01.T01 MTR_8g447290 95.385 65 3 0 132 196 447 511 5.01e-39 140
MsG0880044089.01.T01 MTR_8g447290 60.563 71 24 2 67 134 299 368 2.53e-16 76.6
MsG0880044089.01.T01 MTR_8g447230 63.934 61 18 1 136 196 500 556 3.23e-20 87.8
MsG0880044089.01.T01 MTR_8g447220 43.011 93 47 1 110 196 315 407 6.64e-20 86.7
MsG0880044089.01.T01 MTR_2g063843 61.224 49 19 0 148 196 355 403 2.03e-17 79.7
MsG0880044089.01.T01 MTR_6g092020 63.043 46 17 0 151 196 351 396 2.38e-17 79.3
MsG0880044089.01.T01 MTR_2g063857 61.224 49 19 0 148 196 369 417 2.60e-17 79.3
MsG0880044089.01.T01 MTR_6g021730 62.000 50 19 0 145 194 437 486 6.81e-16 75.5
MsG0880044089.01.T01 MTR_3g096520 54.902 51 23 0 144 194 404 454 1.24e-15 74.7
MsG0880044089.01.T01 MTR_3g096520 54.902 51 23 0 144 194 386 436 1.28e-15 74.7
MsG0880044089.01.T01 MTR_3g096520 54.902 51 23 0 144 194 387 437 1.31e-15 74.7
MsG0880044089.01.T01 MTR_3g075530 37.615 109 53 2 86 194 342 435 8.88e-15 72.0
MsG0880044089.01.T01 MTR_7g033100 51.724 58 28 0 137 194 388 445 3.55e-14 70.5
MsG0880044089.01.T01 MTR_8g089670 61.364 44 17 0 151 194 432 475 5.89e-13 67.0
MsG0880044089.01.T01 MTR_3g086520 56.818 44 19 0 151 194 427 470 5.18e-12 64.3
MsG0880044089.01.T01 MTR_3g086520 56.818 44 19 0 151 194 424 467 5.22e-12 64.3
MsG0880044089.01.T01 MTR_3g086520 56.818 44 19 0 151 194 427 470 5.28e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044089.01.T01 AT1G79380 63.830 47 17 0 148 194 354 400 2.35e-16 76.6
MsG0880044089.01.T01 AT5G14420 63.043 46 17 0 149 194 423 468 1.51e-14 71.6
MsG0880044089.01.T01 AT5G14420 63.043 46 17 0 149 194 423 468 1.51e-14 71.6
MsG0880044089.01.T01 AT5G14420 63.043 46 17 0 149 194 423 468 1.51e-14 71.6
MsG0880044089.01.T01 AT5G14420 63.043 46 17 0 149 194 423 468 1.51e-14 71.6
MsG0880044089.01.T01 AT5G63970 60.417 48 19 0 147 194 319 366 1.54e-14 71.2
MsG0880044089.01.T01 AT5G63970 60.417 48 19 0 147 194 319 366 1.54e-14 71.2
MsG0880044089.01.T01 AT3G01650 60.870 46 18 0 149 194 444 489 5.60e-14 70.1
MsG0880044089.01.T01 AT3G01650 60.870 46 18 0 149 194 444 489 5.60e-14 70.1

Find 42 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGGACATTTAAATAATTT+TGG 0.138480 8:+35442849 MsG0880044089.01.T01:CDS
AGAAGATCACTGATCGTATT+AGG 0.324076 8:+35445138 MsG0880044089.01.T01:CDS
TGAACTGTAAAGTCTATTAG+AGG 0.325102 8:-35443485 None:intergenic
TCAAAGGCTTCACTGTTTGC+AGG 0.355774 8:+35443681 MsG0880044089.01.T01:CDS
GCATTATCTACCACCTCATC+TGG 0.385498 8:-35442909 None:intergenic
AATGAGAAGGACATGGCCTT+TGG 0.423926 8:+35444977 MsG0880044089.01.T01:CDS
GGCCTTTGGTTGTGGACATA+TGG 0.433784 8:+35444991 MsG0880044089.01.T01:CDS
CTGCAATCAAAGCTAACTAC+TGG 0.445966 8:+35443443 MsG0880044089.01.T01:CDS
GATCATGTCTATCTTAGAAT+GGG 0.459739 8:-35445205 None:intergenic
TAAAATCAGAGCCTTGTTGT+TGG 0.470070 8:-35443153 None:intergenic
AAGGACATGGCCTTTGGTTG+TGG 0.470987 8:+35444983 MsG0880044089.01.T01:CDS
TTCATATGACCCTCTATGCT+TGG 0.472128 8:+35442934 MsG0880044089.01.T01:CDS
AGATCATGTCTATCTTAGAA+TGG 0.491598 8:-35445206 None:intergenic
TTGACCATTGTCAATCATCC+AGG 0.492165 8:-35445167 None:intergenic
TACCACCTCATCTGGATTGG+AGG 0.497361 8:-35442901 None:intergenic
GTTACCTGGCTAGTCAAGGT+TGG 0.504888 8:-35444745 None:intergenic
ATCTACCACCTCATCTGGAT+TGG 0.505007 8:-35442904 None:intergenic
TTACTAATCATATGCAGCAT+TGG 0.505066 8:-35445263 None:intergenic
GATCGTATTAGGTTATTCCC+TGG 0.512389 8:+35445149 MsG0880044089.01.T01:CDS
TGGTTACGAATTTATCTCAA+AGG 0.520265 8:+35443665 MsG0880044089.01.T01:CDS
AGCATAGAGGGTCATATGAA+TGG 0.528833 8:-35442931 None:intergenic
GAATAAAATTCCAAGCATAG+AGG 0.529037 8:-35442944 None:intergenic
AAATCCAACCTTGACTAGCC+AGG 0.544678 8:+35444741 MsG0880044089.01.T01:CDS
ATGCAGACGTGCAGAGAGTG+TGG 0.548113 8:+35445083 MsG0880044089.01.T01:intron
ATATGAATGTATATTATGCT+TGG 0.554441 8:+35445375 MsG0880044089.01.T01:three_prime_UTR
TTAAGTTACCTGGCTAGTCA+AGG 0.561973 8:-35444749 None:intergenic
TGAGAAACAAGCTCGTCAAA+TGG 0.563718 8:+35443645 MsG0880044089.01.T01:CDS
TACCATATGTCCACAACCAA+AGG 0.570532 8:-35444993 None:intergenic
GGATGATTGACAATGGTCAA+TGG 0.571092 8:+35445170 MsG0880044089.01.T01:exon
AATAAAATTCCAAGCATAGA+GGG 0.576742 8:-35442943 None:intergenic
CTTAAGCAATGAGAAGGACA+TGG 0.593681 8:+35444970 MsG0880044089.01.T01:CDS
ACAAACATACATATTTACAT+AGG 0.599303 8:-35445346 None:intergenic
TATAAACAATAGCTCATCAG+TGG 0.600561 8:-35445239 None:intergenic
TGCCTCCAATCCAGATGAGG+TGG 0.608834 8:+35442899 MsG0880044089.01.T01:CDS
AATTTGCTTAAGCAATGAGA+AGG 0.614017 8:+35444964 MsG0880044089.01.T01:CDS
TGCAATCAAAGCTAACTACT+GGG 0.618513 8:+35443444 MsG0880044089.01.T01:CDS
AGAAGAAAACACCAACAACA+AGG 0.624780 8:+35443142 MsG0880044089.01.T01:intron
TGCAGACGTGCAGAGAGTGT+GGG 0.636483 8:+35445084 MsG0880044089.01.T01:intron
TTCAAGAAAGAAAATACACC+AGG 0.638849 8:+35443504 MsG0880044089.01.T01:CDS
TGACCATTGTCAATCATCCA+GGG 0.639461 8:-35445166 None:intergenic
TAATGCCTCCAATCCAGATG+AGG 0.666762 8:+35442896 MsG0880044089.01.T01:CDS
ATTCCCTGGATGATTGACAA+TGG 0.669715 8:+35445163 MsG0880044089.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATCAAAATATACAA+AGG - Chr8:35443091-35443110 None:intergenic 10.0%
!!! AATATTATTTCTGTTATAAT+TGG + Chr8:35444896-35444915 MsG0880044089.01.T01:intron 10.0%
!!! GATTTATAATTTACTTTTAT+AGG + Chr8:35444423-35444442 MsG0880044089.01.T01:intron 10.0%
!!! TTTCATTTTTATTTTTTGTT+TGG + Chr8:35443112-35443131 MsG0880044089.01.T01:intron 10.0%
!! CTTATGTTTAAATTATATTC+AGG + Chr8:35444693-35444712 MsG0880044089.01.T01:intron 15.0%
!! TATATAAGAAAAATGATTGT+TGG + Chr8:35443328-35443347 MsG0880044089.01.T01:intron 15.0%
!! TATTTGAAGAAATAAATGAA+TGG - Chr8:35443029-35443048 None:intergenic 15.0%
!!! AAAAATATAATCCAGTTTTT+TGG - Chr8:35445023-35445042 None:intergenic 15.0%
!!! AAATGTTTTTGAGTAAATAT+TGG - Chr8:35444865-35444884 None:intergenic 15.0%
!!! ATTTTTATTTTTTGTTTGGA+TGG + Chr8:35443116-35443135 MsG0880044089.01.T01:intron 15.0%
!!! TTTTTATTTTTTGTTTGGAT+GGG + Chr8:35443117-35443136 MsG0880044089.01.T01:intron 15.0%
!! ACAAACATACATATTTACAT+AGG - Chr8:35445349-35445368 None:intergenic 20.0%
!! ATATGAATGTATATTATGCT+TGG + Chr8:35445375-35445394 MsG0880044089.01.T01:three_prime_UTR 20.0%
!! TATCTCAATTTCTATAAGAA+TGG + Chr8:35444233-35444252 MsG0880044089.01.T01:intron 20.0%
!!! TTGGGACATTTAAATAATTT+TGG + Chr8:35442849-35442868 MsG0880044089.01.T01:CDS 20.0%
!!! TTTTATTTTTTGTTTGGATG+GGG + Chr8:35443118-35443137 MsG0880044089.01.T01:intron 20.0%
! AAAAGACAGAGAAAAATGAT+AGG + Chr8:35444771-35444790 MsG0880044089.01.T01:intron 25.0%
! AACAAAACAAATACGTTGAA+TGG + Chr8:35444188-35444207 MsG0880044089.01.T01:intron 25.0%
! AATAAAATTCCAAGCATAGA+GGG - Chr8:35442946-35442965 None:intergenic 25.0%
! AATTGAAAGATGTAGTTGTT+AGG + Chr8:35443885-35443904 MsG0880044089.01.T01:intron 25.0%
! AGAACAAGTAAAATTTCTTC+AGG - Chr8:35443216-35443235 None:intergenic 25.0%
! AGGTAATAATTCATTTCAAG+AGG + Chr8:35443524-35443543 MsG0880044089.01.T01:intron 25.0%
! TCTTGAAATGAATTATTACC+TGG - Chr8:35443525-35443544 None:intergenic 25.0%
! TTAACTTTGTGTTATAATGC+AGG + Chr8:35443236-35443255 MsG0880044089.01.T01:intron 25.0%
!!! TCAAAGTAACTTTAGTTCTT+TGG - Chr8:35444926-35444945 None:intergenic 25.0%
!!! TCACAAGCAAACTTTAATTT+TGG - Chr8:35443552-35443571 None:intergenic 25.0%
AATTAACAAAAGCCAATGAG+TGG - Chr8:35444129-35444148 None:intergenic 30.0%
ACCCTAAATAACATGTTGAT+TGG + Chr8:35443755-35443774 MsG0880044089.01.T01:intron 30.0%
ACCTAAAAAGAGAATGGAAA+TGG + Chr8:35443300-35443319 MsG0880044089.01.T01:intron 30.0%
AGATCATGTCTATCTTAGAA+TGG - Chr8:35445209-35445228 None:intergenic 30.0%
ATGAGAACCTAAAAAGAGAA+TGG + Chr8:35443294-35443313 MsG0880044089.01.T01:intron 30.0%
GAATAAAATTCCAAGCATAG+AGG - Chr8:35442947-35442966 None:intergenic 30.0%
GATCATGTCTATCTTAGAAT+GGG - Chr8:35445208-35445227 None:intergenic 30.0%
GCTTAAGTTCATATATTTGC+AGG + Chr8:35444653-35444672 MsG0880044089.01.T01:intron 30.0%
GTATGATTGACATGGAAATT+TGG + Chr8:35443183-35443202 MsG0880044089.01.T01:intron 30.0%
TATAAACAATAGCTCATCAG+TGG - Chr8:35445242-35445261 None:intergenic 30.0%
TCGTAACATAATCTAACGAA+GGG - Chr8:35444359-35444378 None:intergenic 30.0%
TGAACTGTAAAGTCTATTAG+AGG - Chr8:35443488-35443507 None:intergenic 30.0%
TGGTTACGAATTTATCTCAA+AGG + Chr8:35443665-35443684 MsG0880044089.01.T01:CDS 30.0%
TTACTAATCATATGCAGCAT+TGG - Chr8:35445266-35445285 None:intergenic 30.0%
TTCAAGAAAGAAAATACACC+AGG + Chr8:35443504-35443523 MsG0880044089.01.T01:CDS 30.0%
TTCGTAACATAATCTAACGA+AGG - Chr8:35444360-35444379 None:intergenic 30.0%
TTTACAGAATGAATGTACCA+AGG + Chr8:35444147-35444166 MsG0880044089.01.T01:intron 30.0%
! AATTTCAGGTATGATTGACA+TGG + Chr8:35443175-35443194 MsG0880044089.01.T01:intron 30.0%
! AATTTGCTTAAGCAATGAGA+AGG + Chr8:35444964-35444983 MsG0880044089.01.T01:CDS 30.0%
! ACCATTTCCATTCTCTTTTT+AGG - Chr8:35443304-35443323 None:intergenic 30.0%
! CTATGCTTGGAATTTTATTC+AGG + Chr8:35442947-35442966 MsG0880044089.01.T01:CDS 30.0%
! CTTTTATAGGCAAATGTTAG+TGG + Chr8:35444436-35444455 MsG0880044089.01.T01:intron 30.0%
! GCCAATCAACATGTTATTTA+GGG - Chr8:35443759-35443778 None:intergenic 30.0%
! TGCCAATCAACATGTTATTT+AGG - Chr8:35443760-35443779 None:intergenic 30.0%
!! GGTTTTTCACTTTTCTTAAC+AGG + Chr8:35442870-35442889 MsG0880044089.01.T01:CDS 30.0%
!! TAGTGGTTAATTTGTGAGAA+GGG + Chr8:35444453-35444472 MsG0880044089.01.T01:intron 30.0%
!! TTAGTGGTTAATTTGTGAGA+AGG + Chr8:35444452-35444471 MsG0880044089.01.T01:intron 30.0%
!!! AAGGCTCTGATTTTAATTTC+AGG + Chr8:35443161-35443180 MsG0880044089.01.T01:CDS 30.0%
!!! TCATTTTTTCCTCAACATCT+TGG - Chr8:35443278-35443297 None:intergenic 30.0%
AAAAGAGAATGGAAATGGTC+AGG + Chr8:35443305-35443324 MsG0880044089.01.T01:intron 35.0%
AACCATGCAGATTGCAATAA+TGG + Chr8:35443780-35443799 MsG0880044089.01.T01:intron 35.0%
AGAAGAAAACACCAACAACA+AGG + Chr8:35443142-35443161 MsG0880044089.01.T01:intron 35.0%
AGAAGATCACTGATCGTATT+AGG + Chr8:35445138-35445157 MsG0880044089.01.T01:CDS 35.0%
CGCTAAGTGTACATTAGAAA+AGG + Chr8:35444394-35444413 MsG0880044089.01.T01:intron 35.0%
CGTAACATAATCTAACGAAG+GGG - Chr8:35444358-35444377 None:intergenic 35.0%
TATGGTAAGGTCCAAAAAAC+TGG + Chr8:35445009-35445028 MsG0880044089.01.T01:intron 35.0%
TGAGATCAGATGTCTTTGTA+AGG + Chr8:35444559-35444578 MsG0880044089.01.T01:intron 35.0%
TGCAATCAAAGCTAACTACT+GGG + Chr8:35443444-35443463 MsG0880044089.01.T01:CDS 35.0%
TGTACATTAGAAAAGGAACG+AGG + Chr8:35444401-35444420 MsG0880044089.01.T01:intron 35.0%
TTCCATTATTGCAATCTGCA+TGG - Chr8:35443785-35443804 None:intergenic 35.0%
TTCTTCAGCCAAAATTGCTT+TGG - Chr8:35444291-35444310 None:intergenic 35.0%
! CAGATTGCAATAATGGAAAC+TGG + Chr8:35443787-35443806 MsG0880044089.01.T01:intron 35.0%
!! AGTGGTTAATTTGTGAGAAG+GGG + Chr8:35444454-35444473 MsG0880044089.01.T01:intron 35.0%
!! TAAAATCAGAGCCTTGTTGT+TGG - Chr8:35443156-35443175 None:intergenic 35.0%
!! TTAATTTGTGAGAAGGGGAT+TGG + Chr8:35444459-35444478 MsG0880044089.01.T01:intron 35.0%
!!! AATTTTGGCTGAAGAATCCA+AGG + Chr8:35444295-35444314 MsG0880044089.01.T01:intron 35.0%
!!! CTCTGTCTTTTTAAGTTACC+TGG - Chr8:35444762-35444781 None:intergenic 35.0%
ACGACACACTGAAATAGACA+AGG - Chr8:35444056-35444075 None:intergenic 40.0%
AGCATAGAGGGTCATATGAA+TGG - Chr8:35442934-35442953 None:intergenic 40.0%
ATGAAACTCTCTCTTTGCCT+TGG - Chr8:35444167-35444186 None:intergenic 40.0%
ATGTACACTTAGCGTAGTAG+TGG - Chr8:35444388-35444407 None:intergenic 40.0%
ATTACATGATCGATGACACG+TGG - Chr8:35443358-35443377 None:intergenic 40.0%
ATTCCCTGGATGATTGACAA+TGG + Chr8:35445163-35445182 MsG0880044089.01.T01:exon 40.0%
CAACAAAGTCCAAGATGTTG+AGG + Chr8:35443266-35443285 MsG0880044089.01.T01:intron 40.0%
CGACATCATGATTGAAGCAA+AGG + Chr8:35443922-35443941 MsG0880044089.01.T01:intron 40.0%
CTGCAATCAAAGCTAACTAC+TGG + Chr8:35443443-35443462 MsG0880044089.01.T01:CDS 40.0%
CTTAAGCAATGAGAAGGACA+TGG + Chr8:35444970-35444989 MsG0880044089.01.T01:CDS 40.0%
GATCGTATTAGGTTATTCCC+TGG + Chr8:35445149-35445168 MsG0880044089.01.T01:CDS 40.0%
GGATGATTGACAATGGTCAA+TGG + Chr8:35445170-35445189 MsG0880044089.01.T01:exon 40.0%
TACCATATGTCCACAACCAA+AGG - Chr8:35444996-35445015 None:intergenic 40.0%
TCAGTGTGTCGTATGTTTGA+AGG + Chr8:35444064-35444083 MsG0880044089.01.T01:intron 40.0%
TGACCATTGTCAATCATCCA+GGG - Chr8:35445169-35445188 None:intergenic 40.0%
TGAGAAACAAGCTCGTCAAA+TGG + Chr8:35443645-35443664 MsG0880044089.01.T01:CDS 40.0%
TGTTTGAAGGCAAAGTAGAG+AGG + Chr8:35444077-35444096 MsG0880044089.01.T01:intron 40.0%
TTCATATGACCCTCTATGCT+TGG + Chr8:35442934-35442953 MsG0880044089.01.T01:CDS 40.0%
TTCCTCAAGTTACCACTCAT+TGG + Chr8:35444114-35444133 MsG0880044089.01.T01:intron 40.0%
TTGACCATTGTCAATCATCC+AGG - Chr8:35445170-35445189 None:intergenic 40.0%
TTGCTTCAATCATGATGTCG+TGG - Chr8:35443922-35443941 None:intergenic 40.0%
TTGGTTGTGGACATATGGTA+AGG + Chr8:35444996-35445015 MsG0880044089.01.T01:intron 40.0%
TTTGCAGGTCAGCATAGTTT+AGG + Chr8:35443696-35443715 MsG0880044089.01.T01:intron 40.0%
! CAGTCCTTCCAAAGCAATTT+TGG + Chr8:35444280-35444299 MsG0880044089.01.T01:intron 40.0%
! TCAGCCAAAATTGCTTTGGA+AGG - Chr8:35444287-35444306 None:intergenic 40.0%
! TTAAGTTACCTGGCTAGTCA+AGG - Chr8:35444752-35444771 None:intergenic 40.0%
AATGAGAAGGACATGGCCTT+TGG + Chr8:35444977-35444996 MsG0880044089.01.T01:CDS 45.0%
AGCCAATGAGTGGTAACTTG+AGG - Chr8:35444119-35444138 None:intergenic 45.0%
ATCTACCACCTCATCTGGAT+TGG - Chr8:35442907-35442926 None:intergenic 45.0%
CACGTGTCAATGTCATGTCA+GGG - Chr8:35443983-35444002 None:intergenic 45.0%
GCATTATCTACCACCTCATC+TGG - Chr8:35442912-35442931 None:intergenic 45.0%
TAATGCCTCCAATCCAGATG+AGG + Chr8:35442896-35442915 MsG0880044089.01.T01:CDS 45.0%
TCAAAGGCTTCACTGTTTGC+AGG + Chr8:35443681-35443700 MsG0880044089.01.T01:CDS 45.0%
TCACGTGTCAATGTCATGTC+AGG - Chr8:35443984-35444003 None:intergenic 45.0%
TGGAGAATTGTTAGCAGCAC+CGG + Chr8:35444479-35444498 MsG0880044089.01.T01:intron 45.0%
TGTCATGTCAGGGACAACAT+CGG - Chr8:35443973-35443992 None:intergenic 45.0%
! AAATCCAACCTTGACTAGCC+AGG + Chr8:35444741-35444760 MsG0880044089.01.T01:CDS 45.0%
! TTTTCCACCTGAGACCTAGA+AGG - Chr8:35444520-35444539 None:intergenic 45.0%
!! TATAAATCATAATTAAATTA+TGG + Chr8:35443047-35443066 MsG0880044089.01.T01:intron 5.0%
AAGGACATGGCCTTTGGTTG+TGG + Chr8:35444983-35445002 MsG0880044089.01.T01:CDS 50.0%
AAGGAGGTTCAAGGTTCGAC+CGG - Chr8:35444501-35444520 None:intergenic 50.0%
ACATGATCGATGACACGTGG+CGG - Chr8:35443355-35443374 None:intergenic 50.0%
ACGACACTGACACGAACACA+TGG - Chr8:35444024-35444043 None:intergenic 50.0%
AGGTCTCAGGTGGAAAAGAG+AGG + Chr8:35444523-35444542 MsG0880044089.01.T01:intron 50.0%
ATCCAAGGCTGCTGTTGTTG+AGG + Chr8:35444310-35444329 MsG0880044089.01.T01:intron 50.0%
CGAACCTTGAACCTCCTTCT+AGG + Chr8:35444503-35444522 MsG0880044089.01.T01:intron 50.0%
GAGACCTAGAAGGAGGTTCA+AGG - Chr8:35444510-35444529 None:intergenic 50.0%
GGCCTTTGGTTGTGGACATA+TGG + Chr8:35444991-35445010 MsG0880044089.01.T01:CDS 50.0%
TACCTCAACAACAGCAGCCT+TGG - Chr8:35444315-35444334 None:intergenic 50.0%
TGAACCTCCTTCTAGGTCTC+AGG + Chr8:35444510-35444529 MsG0880044089.01.T01:intron 50.0%
TGGAAACTGGAGTAGCAGAG+AGG + Chr8:35443800-35443819 MsG0880044089.01.T01:intron 50.0%
! GTTACCTGGCTAGTCAAGGT+TGG - Chr8:35444748-35444767 None:intergenic 50.0%
! TACCACCTCATCTGGATTGG+AGG - Chr8:35442904-35442923 None:intergenic 50.0%
ACCTCCTTCTAGGTCTCAGG+TGG + Chr8:35444513-35444532 MsG0880044089.01.T01:intron 55.0%
ATGCAGACGTGCAGAGAGTG+TGG + Chr8:35445083-35445102 MsG0880044089.01.T01:intron 55.0%
GTTCGTGTCAGTGTCGTGTC+TGG + Chr8:35444027-35444046 MsG0880044089.01.T01:intron 55.0%
TCCACCTGAGACCTAGAAGG+AGG - Chr8:35444517-35444536 None:intergenic 55.0%
TGCCTCCAATCCAGATGAGG+TGG + Chr8:35442899-35442918 MsG0880044089.01.T01:CDS 55.0%
! TGCAGACGTGCAGAGAGTGT+GGG + Chr8:35445084-35445103 MsG0880044089.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
Chr8 gene 35442849 35445397 35442849 ID=MsG0880044089.01;Name=MsG0880044089.01
Chr8 mRNA 35442849 35445397 35442849 ID=MsG0880044089.01.T01;Parent=MsG0880044089.01;Name=MsG0880044089.01.T01;_AED=0.43;_eAED=0.49;_QI=0|0.5|0.85|1|0|0|7|222|196
Chr8 exon 35445089 35445397 35445089 ID=MsG0880044089.01.T01:exon:3416;Parent=MsG0880044089.01.T01
Chr8 exon 35444956 35445012 35444956 ID=MsG0880044089.01.T01:exon:3415;Parent=MsG0880044089.01.T01
Chr8 exon 35444715 35444762 35444715 ID=MsG0880044089.01.T01:exon:3414;Parent=MsG0880044089.01.T01
Chr8 exon 35443606 35443702 35443606 ID=MsG0880044089.01.T01:exon:3413;Parent=MsG0880044089.01.T01
Chr8 exon 35443427 35443525 35443427 ID=MsG0880044089.01.T01:exon:3412;Parent=MsG0880044089.01.T01
Chr8 exon 35443144 35443182 35443144 ID=MsG0880044089.01.T01:exon:3411;Parent=MsG0880044089.01.T01
Chr8 exon 35442849 35443012 35442849 ID=MsG0880044089.01.T01:exon:3410;Parent=MsG0880044089.01.T01
Chr8 CDS 35442849 35443012 35442849 ID=MsG0880044089.01.T01:cds;Parent=MsG0880044089.01.T01
Chr8 CDS 35443144 35443182 35443144 ID=MsG0880044089.01.T01:cds;Parent=MsG0880044089.01.T01
Chr8 CDS 35443427 35443525 35443427 ID=MsG0880044089.01.T01:cds;Parent=MsG0880044089.01.T01
Chr8 CDS 35443606 35443702 35443606 ID=MsG0880044089.01.T01:cds;Parent=MsG0880044089.01.T01
Chr8 CDS 35444715 35444762 35444715 ID=MsG0880044089.01.T01:cds;Parent=MsG0880044089.01.T01
Chr8 CDS 35444956 35445012 35444956 ID=MsG0880044089.01.T01:cds;Parent=MsG0880044089.01.T01
Chr8 CDS 35445089 35445175 35445089 ID=MsG0880044089.01.T01:cds;Parent=MsG0880044089.01.T01
Chr8 three_prime_UTR 35445176 35445397 35445176 ID=MsG0880044089.01.T01:three_prime_utr;Parent=MsG0880044089.01.T01
Gene Sequence

>MsG0880044089.01.T01

TTGGGACATTTAAATAATTTTGGTTTTTCACTTTTCTTAACAGGTTATAATGCCTCCAATCCAGATGAGGTGGTAGATAATGCCATTCATATGACCCTCTATGCTTGGAATTTTATTCAGGTCTTTATATATCTAGTATTTTTTTTTATTATGCTATATCTTTTAAGAAAACACCAACAACAAGGCTCTGATTTTAATTTCAGAAGTGAAAATATAACACTGCAATCAAAGCTAACTACTGGGAAATTAGAGCAAAGAATTCCTCTAATAGACTTTACAGTTCAAGAAAGAAAATACACCAGTGTTTATTTGAAGCATGAAAATGAATTGATATCGAATGCTGAGAAACAAGCTCGTCAAATGGTTACGAATTTATCTCAAAGGCTTCACTGTTTGCAGGTGTACAAGACAATCAGTTTAAGTAGAAATCCAACCTTGACTAGCCAGTCTTGTACAATTTGCTTAAGCAATGAGAAGGACATGGCCTTTGGTTGTGGACATATGACGTGCAGAGAGTGTGGGTCAAAAATTCGCAAATGTCATATATGTAGAAAGAAGATCACTGATCGTATTAGGTTATTCCCTGGATGA
Protein sequence

>MsG0880044089.01.T01

LGHLNNFGFSLFLTGYNASNPDEVVDNAIHMTLYAWNFIQVFIYLVFFFIMLYLLRKHQQQGSDFNFRSENITLQSKLTTGKLEQRIPLIDFTVQERKYTSVYLKHENELISNAEKQARQMVTNLSQRLHCLQVYKTISLSRNPTLTSQSCTICLSNEKDMAFGCGHMTCRECGSKIRKCHICRKKITDRIRLFPG*