AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880044675.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044675.01.T01 MTR_8g466030 88.341 223 6 1 1 223 1 203 7.10e-140 390
MsG0880044675.01.T01 MTR_2g081810 81.614 223 21 1 1 223 1 203 4.54e-130 365
MsG0880044675.01.T01 MTR_4g091900 74.771 218 35 1 3 220 4 201 4.13e-115 327
MsG0880044675.01.T01 MTR_4g091900 74.163 209 34 1 12 220 1 189 7.80e-109 311
MsG0880044675.01.T01 MTR_2g011080 66.818 220 53 1 1 220 1 200 6.35e-102 294
MsG0880044675.01.T01 MTR_2g011080 66.038 212 52 1 9 220 4 195 1.22e-96 280
MsG0880044675.01.T01 MTR_5g070030 62.100 219 62 2 3 220 4 202 5.19e-95 276
MsG0880044675.01.T01 MTR_4g069250 61.927 218 62 3 3 219 51 248 3.82e-89 263
MsG0880044675.01.T01 MTR_5g019620 55.656 221 77 2 3 222 52 252 5.53e-83 248
MsG0880044675.01.T01 MTR_8g466080 92.437 119 9 0 105 223 1 119 7.22e-75 222
MsG0880044675.01.T01 MTR_2g011080 69.799 149 45 0 72 220 1 149 3.87e-74 221
MsG0880044675.01.T01 MTR_4g091890 80.342 117 19 1 104 220 1 113 8.60e-63 191
MsG0880044675.01.T01 MTR_8g466110 64.800 125 16 4 72 195 1 98 6.26e-42 138
MsG0880044675.01.T01 MTR_8g466150 64.800 125 16 4 72 195 1 98 6.26e-42 138
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044675.01.T01 AT5G54500 79.091 220 26 1 1 220 1 200 3.43e-124 350
MsG0880044675.01.T01 AT4G27270 77.130 223 31 1 1 223 1 203 9.21e-123 347
MsG0880044675.01.T01 AT4G27270 76.415 212 30 1 12 223 1 192 6.86e-115 326
MsG0880044675.01.T01 AT4G27270 76.415 212 30 1 12 223 1 192 6.86e-115 326
MsG0880044675.01.T01 AT5G54500 76.923 182 22 1 1 182 1 162 3.81e-96 281
MsG0880044675.01.T01 AT4G27270 86.842 152 20 0 72 223 1 152 7.02e-96 276
MsG0880044675.01.T01 AT5G58800 58.667 225 71 3 1 223 1 205 6.71e-90 263
MsG0880044675.01.T01 AT5G58800 58.667 225 71 3 1 223 1 205 6.71e-90 263
MsG0880044675.01.T01 AT4G36750 59.545 220 68 2 3 221 73 272 3.97e-89 264

Find 68 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTCTTCTGGCAATATTTC+TGG 0.154554 8:+47124048 None:intergenic
TTTGGATTTCCAACAAGATT+TGG 0.260288 8:-47123943 MsG0880044675.01.T01:CDS
GGAATGCTATTTGTTCCAAT+TGG 0.311832 8:-47123355 MsG0880044675.01.T01:CDS
AGCTCATTCGGGGTAATAAT+TGG 0.315442 8:+47123988 None:intergenic
GTTCCAATTGGGTATACATT+TGG 0.346928 8:-47123343 MsG0880044675.01.T01:CDS
TTGTCCACCGCCTTGGGAGC+TGG 0.367225 8:+47123822 None:intergenic
CACCCTCAGAAAGCTCATTC+GGG 0.372211 8:+47123977 None:intergenic
GAAGATTCCAGCAGGCTTAC+CGG 0.376396 8:+47123852 None:intergenic
CTTGAGCTTCTTTGTGATTG+TGG 0.389114 8:+47123189 None:intergenic
TATACATGCCTGCCATAGTT+TGG 0.402235 8:+47124393 None:intergenic
TCACCCTCAGAAAGCTCATT+CGG 0.403430 8:+47123976 None:intergenic
GAATGCTATTTGTTCCAATT+GGG 0.403516 8:-47123354 MsG0880044675.01.T01:CDS
TGTTCCAACTCAAGCTTAGT+TGG 0.407575 8:+47123238 None:intergenic
AAAACCTTTCTAGATGCAAC+TGG 0.418569 8:-47123901 MsG0880044675.01.T01:CDS
AGTCTCTTGTCCACCGCCTT+GGG 0.420686 8:+47123816 None:intergenic
TAGTCTCTTGTCCACCGCCT+TGG 0.423692 8:+47123815 None:intergenic
AATAATTGGTACATCACTCT+TGG 0.426679 8:+47124002 None:intergenic
TAGATGCAACTGGAGGTATA+TGG 0.426772 8:-47123891 MsG0880044675.01.T01:CDS
GGTGGAAGTCCATATGGTTC+AGG 0.428735 8:-47123289 MsG0880044675.01.T01:CDS
GCCATCATTCCAAATCTTGT+TGG 0.428775 8:+47123934 None:intergenic
TCCAACAAGATTTGGAATGA+TGG 0.429962 8:-47123935 MsG0880044675.01.T01:CDS
TGGAAAACACAACAGCTTGC+CGG 0.450353 8:-47123871 MsG0880044675.01.T01:CDS
GGCAGGTACTACTCAATGTA+TGG 0.455745 8:-47124478 MsG0880044675.01.T01:intron
TAGCAGAAGAAATAAAGAAA+GGG 0.463523 8:-47124441 MsG0880044675.01.T01:CDS
GTGAAAGGTGGAAGTCCATA+TGG 0.471477 8:-47123295 MsG0880044675.01.T01:CDS
GCACCAAATGTATACCCAAT+TGG 0.472027 8:+47123340 None:intergenic
GCTCACTGCTATAACTCAAT+TGG 0.474278 8:-47123386 MsG0880044675.01.T01:CDS
CAGCTTGCCGGTAAGCCTGC+TGG 0.474392 8:-47123859 MsG0880044675.01.T01:CDS
ACCTCCAGTTGCATCTAGAA+AGG 0.482388 8:+47123897 None:intergenic
AAAGGGGCAGATTCCGTTGA+AGG 0.489196 8:-47124424 MsG0880044675.01.T01:CDS
GCATATGTTCCTGAACCATA+TGG 0.493129 8:+47123280 None:intergenic
ATCTTACCAAGTACCTCTTC+TGG 0.494196 8:+47124036 None:intergenic
ATTGGGTATACATTTGGTGC+TGG 0.497066 8:-47123337 MsG0880044675.01.T01:CDS
ATAATTGGTACATCACTCTT+GGG 0.500292 8:+47124003 None:intergenic
CTAGCAGAAGAAATAAAGAA+AGG 0.502855 8:-47124442 MsG0880044675.01.T01:CDS
CATATGCTGGTGATGGATCA+AGG 0.509571 8:-47123264 MsG0880044675.01.T01:CDS
TGTTGAGGCCAAACTATGGC+AGG 0.519496 8:-47124401 MsG0880044675.01.T01:CDS
AGCACCAGCTCCCAAGGCGG+TGG 0.524225 8:-47123826 MsG0880044675.01.T01:CDS
TGTTGAACATATATATGAGC+AGG 0.528499 8:-47124073 MsG0880044675.01.T01:CDS
AATGAGCTTTCTGAGGGTGA+TGG 0.531961 8:-47123973 MsG0880044675.01.T01:CDS
ATAACTCAATTGGTTCATCA+TGG 0.534481 8:-47123376 MsG0880044675.01.T01:CDS
TTTGGCCTCAACACCTTCAA+CGG 0.548254 8:+47124411 None:intergenic
TTCTACAGCACCAGCTCCCA+AGG 0.551118 8:-47123832 MsG0880044675.01.T01:CDS
TATGGTTCAGGAACATATGC+TGG 0.562306 8:-47123277 MsG0880044675.01.T01:CDS
GCAGCCAACTAAGCTTGAGT+TGG 0.571758 8:-47123242 MsG0880044675.01.T01:CDS
AAGGTGTTGAGGCCAAACTA+TGG 0.581500 8:-47124405 MsG0880044675.01.T01:CDS
ACCCCGAATGAGCTTTCTGA+GGG 0.587616 8:-47123979 MsG0880044675.01.T01:CDS
GAGATGGAAGAAGTGAAAGG+TGG 0.588670 8:-47123307 MsG0880044675.01.T01:CDS
GTGCTGTAGAAGATTCCAGC+AGG 0.592840 8:+47123844 None:intergenic
TTGTGGCAATATACATCCCC+TGG 0.598588 8:+47123206 None:intergenic
TCAGGAACATATGCTGGTGA+TGG 0.599049 8:-47123271 MsG0880044675.01.T01:CDS
ACCAGAAATATTGCCAGAAG+AGG 0.599177 8:-47124049 MsG0880044675.01.T01:CDS
AGATTCCGTTGAAGGTGTTG+AGG 0.599360 8:-47124416 MsG0880044675.01.T01:CDS
TACCCCGAATGAGCTTTCTG+AGG 0.604810 8:-47123980 MsG0880044675.01.T01:CDS
GTTGGAACAAGCATTCCACC+AGG 0.605418 8:-47123224 MsG0880044675.01.T01:CDS
CTACTCAATGTATGGACATG+TGG 0.606328 8:-47124470 MsG0880044675.01.T01:CDS
AGCAGAAGAAATAAAGAAAG+GGG 0.609931 8:-47124440 MsG0880044675.01.T01:CDS
TGGTGCTGGAATGTTTGAGA+TGG 0.623605 8:-47123323 MsG0880044675.01.T01:CDS
CACAATCACAAAGAAGCTCA+AGG 0.623802 8:-47123188 MsG0880044675.01.T01:CDS
TGGAACAAGCATTCCACCAG+GGG 0.644688 8:-47123222 MsG0880044675.01.T01:CDS
ATATTGCCAGAAGAGGTACT+TGG 0.657546 8:-47124042 MsG0880044675.01.T01:CDS
TGGCAATATACATCCCCTGG+TGG 0.667955 8:+47123209 None:intergenic
ACCCTCAGAAAGCTCATTCG+GGG 0.680296 8:+47123978 None:intergenic
TTTGAGATGGAAGAAGTGAA+AGG 0.685250 8:-47123310 MsG0880044675.01.T01:CDS
TTGGAACAAGCATTCCACCA+GGG 0.686269 8:-47123223 MsG0880044675.01.T01:CDS
ATTGGTACATCACTCTTGGG+TGG 0.692432 8:+47124006 None:intergenic
ACCTTTCTAGATGCAACTGG+AGG 0.696386 8:-47123898 MsG0880044675.01.T01:CDS
TACAGCACCAGCTCCCAAGG+CGG 0.704377 8:-47123829 MsG0880044675.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATTATCTTAAATATTG+TGG - Chr8:47123935-47123954 MsG0880044675.01.T01:CDS 10.0%
!! TAAAAATGTCAAAATTATTA+TGG - Chr8:47124038-47124057 MsG0880044675.01.T01:CDS 10.0%
!! AAAAAGTTGACATATTTATA+GGG - Chr8:47123759-47123778 MsG0880044675.01.T01:intron 15.0%
!! ATATTTATGTTTAGAAATTG+TGG - Chr8:47125112-47125131 MsG0880044675.01.T01:intron 15.0%
!!! TAAAATTTTTATTCAGCTTT+TGG + Chr8:47123726-47123745 None:intergenic 15.0%
!!! TAATTTTCTCTACAATAATA+TGG + Chr8:47123869-47123888 None:intergenic 15.0%
!!! TAGTGATTGAAATTTTTTTA+GGG + Chr8:47123385-47123404 None:intergenic 15.0%
!! ACTATTCTAATAGAATTTCA+TGG + Chr8:47124385-47124404 None:intergenic 20.0%
!! CAAAAAGTTGACATATTTAT+AGG - Chr8:47123758-47123777 MsG0880044675.01.T01:intron 20.0%
!! CGAAAAGTTTGTATATTTAT+AGG + Chr8:47123326-47123345 None:intergenic 20.0%
!! CTATTCTAATAGAATTTCAT+GGG + Chr8:47124384-47124403 None:intergenic 20.0%
!! TAATTCACTAAATGAACATT+TGG - Chr8:47123828-47123847 MsG0880044675.01.T01:CDS 20.0%
!! TACATATGAGTTTACTTTAA+AGG - Chr8:47123664-47123683 MsG0880044675.01.T01:intron 20.0%
!! TTATACATTTGTAAGATGAA+TGG - Chr8:47125088-47125107 MsG0880044675.01.T01:intron 20.0%
!!! AAAATTTCAATCACTACTTT+TGG - Chr8:47123389-47123408 MsG0880044675.01.T01:CDS 20.0%
!!! AAATTTTCCATCTTAACTTT+TGG + Chr8:47123695-47123714 None:intergenic 20.0%
!!! AAGCTGAATAAAAATTTTAG+AGG - Chr8:47123727-47123746 MsG0880044675.01.T01:intron 20.0%
!!! AAGTTAAAGGAAAATTTTAG+AGG + Chr8:47123357-47123376 None:intergenic 20.0%
!!! AGCTGAATAAAAATTTTAGA+GGG - Chr8:47123728-47123747 MsG0880044675.01.T01:intron 20.0%
!!! AGTTAAAGGAAAATTTTAGA+GGG + Chr8:47123356-47123375 None:intergenic 20.0%
!!! GTAGTGATTGAAATTTTTTT+AGG + Chr8:47123386-47123405 None:intergenic 20.0%
!!! TTAAGATGGAAAATTTTGTA+GGG - Chr8:47123699-47123718 MsG0880044675.01.T01:intron 20.0%
! AATGTCAAAATTATTATGGC+AGG - Chr8:47124042-47124061 MsG0880044675.01.T01:CDS 25.0%
! ATTCAGCTGATAAAAAAAGA+TGG + Chr8:47123803-47123822 None:intergenic 25.0%
! GAAGAGATTCTCATAATATT+AGG - Chr8:47123604-47123623 MsG0880044675.01.T01:intron 25.0%
! TAGCAGAAGAAATAAAGAAA+GGG - Chr8:47124096-47124115 MsG0880044675.01.T01:intron 25.0%
! TTAGTGCATATTTGAATAGT+CGG - Chr8:47124775-47124794 MsG0880044675.01.T01:intron 25.0%
! TTCAAATATGCACTAAGAAT+AGG + Chr8:47124771-47124790 None:intergenic 25.0%
! TTCAGCTGATAAAAAAAGAT+GGG + Chr8:47123802-47123821 None:intergenic 25.0%
!! ATATGAGTTTACTTTAAAGG+AGG - Chr8:47123667-47123686 MsG0880044675.01.T01:intron 25.0%
!! GTTAAGATGGAAAATTTTGT+AGG - Chr8:47123698-47123717 MsG0880044675.01.T01:intron 25.0%
!! TATGAGTTTACTTTAAAGGA+GGG - Chr8:47123668-47123687 MsG0880044675.01.T01:intron 25.0%
!! TTTGATTTCGAAGTATCTAT+CGG - Chr8:47124246-47124265 MsG0880044675.01.T01:intron 25.0%
!!! AGATGGGTTAAATATGTTTT+TGG + Chr8:47123786-47123805 None:intergenic 25.0%
!!! TCTGCATGTTAATCTTTTTT+TGG - Chr8:47123298-47123317 MsG0880044675.01.T01:CDS 25.0%
!!! TTTTAGGGACTAAAAGTTAA+AGG + Chr8:47123370-47123389 None:intergenic 25.0%
AATAATTGGTACATCACTCT+TGG + Chr8:47124538-47124557 None:intergenic 30.0%
AATATGCACTAAGAATAGGT+TGG + Chr8:47124767-47124786 None:intergenic 30.0%
AGCAGAAGAAATAAAGAAAG+GGG - Chr8:47124097-47124116 MsG0880044675.01.T01:intron 30.0%
ATAATTGGTACATCACTCTT+GGG + Chr8:47124537-47124556 None:intergenic 30.0%
CTAGCAGAAGAAATAAAGAA+AGG - Chr8:47124095-47124114 MsG0880044675.01.T01:intron 30.0%
TGTTGAACATATATATGAGC+AGG - Chr8:47124464-47124483 MsG0880044675.01.T01:CDS 30.0%
TTGTGGATTTAATATATGCC+AGG - Chr8:47125129-47125148 MsG0880044675.01.T01:intron 30.0%
TTTGGATTTCCAACAAGATT+TGG - Chr8:47124594-47124613 MsG0880044675.01.T01:intron 30.0%
! ATAACTCAATTGGTTCATCA+TGG - Chr8:47125161-47125180 MsG0880044675.01.T01:intron 30.0%
! ATTTTGCTAAATATGCGAAG+TGG - Chr8:47124418-47124437 MsG0880044675.01.T01:CDS 30.0%
! GAATGCTATTTGTTCCAATT+GGG - Chr8:47125183-47125202 MsG0880044675.01.T01:intron 30.0%
!! CATTTTTAAGAGACTTGTGT+AGG + Chr8:47124026-47124045 None:intergenic 30.0%
!!! GAGTTTTGGATCAAAATTTG+AGG + Chr8:47125022-47125041 None:intergenic 30.0%
AAAACCTTTCTAGATGCAAC+TGG - Chr8:47124636-47124655 MsG0880044675.01.T01:intron 35.0%
ACAAACACGTAAAATGTTCC+CGG - Chr8:47124320-47124339 MsG0880044675.01.T01:intron 35.0%
CAATTTCTAAGTATGGACCA+TGG + Chr8:47124970-47124989 None:intergenic 35.0%
CATGGTCCATACTTAGAAAT+TGG - Chr8:47124968-47124987 MsG0880044675.01.T01:intron 35.0%
CTGCATCCAATTTCTAAGTA+TGG + Chr8:47124977-47124996 None:intergenic 35.0%
GTCGAAATGGTAAAAGATTC+CGG + Chr8:47124342-47124361 None:intergenic 35.0%
GTTCCAATTGGGTATACATT+TGG - Chr8:47125194-47125213 MsG0880044675.01.T01:intron 35.0%
TAAATATGCGAAGTGGAGTT+AGG - Chr8:47124425-47124444 MsG0880044675.01.T01:CDS 35.0%
TATTCACGTAATCATGCACT+CGG + Chr8:47125051-47125070 None:intergenic 35.0%
TCGAAATGGTAAAAGATTCC+GGG + Chr8:47124341-47124360 None:intergenic 35.0%
TCTCACACACATTACTAATG+TGG - Chr8:47124273-47124292 MsG0880044675.01.T01:intron 35.0%
TCTCATAAATGCAGTCGAAA+TGG + Chr8:47124355-47124374 None:intergenic 35.0%
TTGGATGCAGAATACAAACT+TGG - Chr8:47124987-47125006 MsG0880044675.01.T01:intron 35.0%
TTTGAATAGTCGGTGTGATT+TGG - Chr8:47124785-47124804 MsG0880044675.01.T01:intron 35.0%
! CTAAGAATAGGTTGGAGTAA+AGG + Chr8:47124759-47124778 None:intergenic 35.0%
! GGAATGCTATTTGTTCCAAT+TGG - Chr8:47125182-47125201 MsG0880044675.01.T01:intron 35.0%
! TCCAACAAGATTTGGAATGA+TGG - Chr8:47124602-47124621 MsG0880044675.01.T01:intron 35.0%
! TTTGAGATGGAAGAAGTGAA+AGG - Chr8:47125227-47125246 MsG0880044675.01.T01:intron 35.0%
!! ACTAATGTGGAGAAGTATTG+CGG - Chr8:47124286-47124305 MsG0880044675.01.T01:intron 35.0%
ACCAGAAATATTGCCAGAAG+AGG - Chr8:47124488-47124507 MsG0880044675.01.T01:intron 40.0%
ACCTCTTCTGGCAATATTTC+TGG + Chr8:47124492-47124511 None:intergenic 40.0%
AGCTCATTCGGGGTAATAAT+TGG + Chr8:47124552-47124571 None:intergenic 40.0%
ATCTTACCAAGTACCTCTTC+TGG + Chr8:47124504-47124523 None:intergenic 40.0%
CACAATCACAAAGAAGCTCA+AGG - Chr8:47125349-47125368 MsG0880044675.01.T01:intron 40.0%
CTACTCAATGTATGGACATG+TGG - Chr8:47124067-47124086 MsG0880044675.01.T01:CDS 40.0%
CTATGTAAAGCTCCTAGTGT+AGG + Chr8:47124815-47124834 None:intergenic 40.0%
CTTGAGCTTCTTTGTGATTG+TGG + Chr8:47125351-47125370 None:intergenic 40.0%
GCACCAAATGTATACCCAAT+TGG + Chr8:47125200-47125219 None:intergenic 40.0%
GCATATGTTCCTGAACCATA+TGG + Chr8:47125260-47125279 None:intergenic 40.0%
GCCATCATTCCAAATCTTGT+TGG + Chr8:47124606-47124625 None:intergenic 40.0%
GCTCACTGCTATAACTCAAT+TGG - Chr8:47125151-47125170 MsG0880044675.01.T01:intron 40.0%
GTCAACGATCAAACAAACCA+TGG - Chr8:47124950-47124969 MsG0880044675.01.T01:intron 40.0%
TATACATGCCTGCCATAGTT+TGG + Chr8:47124147-47124166 None:intergenic 40.0%
TATGGTTCAGGAACATATGC+TGG - Chr8:47125260-47125279 MsG0880044675.01.T01:intron 40.0%
TGTTCCAACTCAAGCTTAGT+TGG + Chr8:47125302-47125321 None:intergenic 40.0%
! GTTTGATCGTTGACTGGATA+TGG + Chr8:47124944-47124963 None:intergenic 40.0%
! TAGATGCAACTGGAGGTATA+TGG - Chr8:47124646-47124665 MsG0880044675.01.T01:intron 40.0%
!! ATATTGCCAGAAGAGGTACT+TGG - Chr8:47124495-47124514 MsG0880044675.01.T01:intron 40.0%
!! ATTGGGTATACATTTGGTGC+TGG - Chr8:47125200-47125219 MsG0880044675.01.T01:intron 40.0%
!! TGATTTGGTCAACCTACACT+AGG - Chr8:47124800-47124819 MsG0880044675.01.T01:intron 40.0%
!! TGGTTTGTTTGATCGTTGAC+TGG + Chr8:47124950-47124969 None:intergenic 40.0%
ACCTCCAGTTGCATCTAGAA+AGG + Chr8:47124643-47124662 None:intergenic 45.0%
ACCTTTCTAGATGCAACTGG+AGG - Chr8:47124639-47124658 MsG0880044675.01.T01:intron 45.0%
ATTGGTACATCACTCTTGGG+TGG + Chr8:47124534-47124553 None:intergenic 45.0%
GAGATGGAAGAAGTGAAAGG+TGG - Chr8:47125230-47125249 MsG0880044675.01.T01:intron 45.0%
GGAGGGACCAAAAGTTAAGA+TGG - Chr8:47123685-47123704 MsG0880044675.01.T01:intron 45.0%
GGCAGGTACTACTCAATGTA+TGG - Chr8:47124059-47124078 MsG0880044675.01.T01:CDS 45.0%
GTGAAAGGTGGAAGTCCATA+TGG - Chr8:47125242-47125261 MsG0880044675.01.T01:intron 45.0%
TCACCCTCAGAAAGCTCATT+CGG + Chr8:47124564-47124583 None:intergenic 45.0%
TCAGGAACATATGCTGGTGA+TGG - Chr8:47125266-47125285 MsG0880044675.01.T01:intron 45.0%
TGGAAAACACAACAGCTTGC+CGG - Chr8:47124666-47124685 MsG0880044675.01.T01:intron 45.0%
TTGAGTTATAGCAGTGAGCC+TGG + Chr8:47125150-47125169 None:intergenic 45.0%
TTGGAACAAGCATTCCACCA+GGG - Chr8:47125314-47125333 MsG0880044675.01.T01:intron 45.0%
TTGTGGCAATATACATCCCC+TGG + Chr8:47125334-47125353 None:intergenic 45.0%
TTTGGCCTCAACACCTTCAA+CGG + Chr8:47124129-47124148 None:intergenic 45.0%
! AATGAGCTTTCTGAGGGTGA+TGG - Chr8:47124564-47124583 MsG0880044675.01.T01:intron 45.0%
! GCACTCGGAAACTAGAGTTT+TGG + Chr8:47125036-47125055 None:intergenic 45.0%
! TGGTGCTGGAATGTTTGAGA+TGG - Chr8:47125214-47125233 MsG0880044675.01.T01:intron 45.0%
!! AAGGTGTTGAGGCCAAACTA+TGG - Chr8:47124132-47124151 MsG0880044675.01.T01:intron 45.0%
!! AGATTCCGTTGAAGGTGTTG+AGG - Chr8:47124121-47124140 MsG0880044675.01.T01:intron 45.0%
!! CATATGCTGGTGATGGATCA+AGG - Chr8:47125273-47125292 MsG0880044675.01.T01:intron 45.0%
!!! GAGGGTGATGGTTTTGTCTT+TGG - Chr8:47124576-47124595 MsG0880044675.01.T01:intron 45.0%
!!! ATGAATTTTTATATTATTTA+CGG + Chr8:47123544-47123563 None:intergenic 5.0%
!!! TAAAAAATTCTAATTTATTT+TGG - Chr8:47123582-47123601 MsG0880044675.01.T01:intron 5.0%
AAAGGGGCAGATTCCGTTGA+AGG - Chr8:47124113-47124132 MsG0880044675.01.T01:intron 50.0%
ACCCCGAATGAGCTTTCTGA+GGG - Chr8:47124558-47124577 MsG0880044675.01.T01:intron 50.0%
ACCCTCAGAAAGCTCATTCG+GGG + Chr8:47124562-47124581 None:intergenic 50.0%
CACCCTCAGAAAGCTCATTC+GGG + Chr8:47124563-47124582 None:intergenic 50.0%
GAAGATTCCAGCAGGCTTAC+CGG + Chr8:47124688-47124707 None:intergenic 50.0%
GCAGCCAACTAAGCTTGAGT+TGG - Chr8:47125295-47125314 MsG0880044675.01.T01:intron 50.0%
GGTGGAAGTCCATATGGTTC+AGG - Chr8:47125248-47125267 MsG0880044675.01.T01:intron 50.0%
GTGCTGTAGAAGATTCCAGC+AGG + Chr8:47124696-47124715 None:intergenic 50.0%
GTTGGAACAAGCATTCCACC+AGG - Chr8:47125313-47125332 MsG0880044675.01.T01:intron 50.0%
TACCCCGAATGAGCTTTCTG+AGG - Chr8:47124557-47124576 MsG0880044675.01.T01:intron 50.0%
TGGAACAAGCATTCCACCAG+GGG - Chr8:47125315-47125334 MsG0880044675.01.T01:intron 50.0%
TGGCAATATACATCCCCTGG+TGG + Chr8:47125331-47125350 None:intergenic 50.0%
TGTTGAGGCCAAACTATGGC+AGG - Chr8:47124136-47124155 MsG0880044675.01.T01:intron 50.0%
AGTCTCTTGTCCACCGCCTT+GGG + Chr8:47124724-47124743 None:intergenic 55.0%
TAGTCTCTTGTCCACCGCCT+TGG + Chr8:47124725-47124744 None:intergenic 55.0%
TTCTACAGCACCAGCTCCCA+AGG - Chr8:47124705-47124724 MsG0880044675.01.T01:intron 55.0%
TACAGCACCAGCTCCCAAGG+CGG - Chr8:47124708-47124727 MsG0880044675.01.T01:intron 60.0%
CAGCTTGCCGGTAAGCCTGC+TGG - Chr8:47124678-47124697 MsG0880044675.01.T01:intron 65.0%
TTGTCCACCGCCTTGGGAGC+TGG + Chr8:47124718-47124737 None:intergenic 65.0%
AGCACCAGCTCCCAAGGCGG+TGG - Chr8:47124711-47124730 MsG0880044675.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 47123177 47125382 47123177 ID=MsG0880044675.01;Name=MsG0880044675.01
Chr8 mRNA 47123177 47125382 47123177 ID=MsG0880044675.01.T01;Parent=MsG0880044675.01;Name=MsG0880044675.01.T01;_AED=0.41;_eAED=0.44;_QI=0|0|0|1|0.33|0.5|4|0|223
Chr8 exon 47125360 47125382 47125360 ID=MsG0880044675.01.T01:exon:19225;Parent=MsG0880044675.01.T01
Chr8 exon 47124381 47124495 47124381 ID=MsG0880044675.01.T01:exon:19224;Parent=MsG0880044675.01.T01
Chr8 exon 47123811 47124112 47123811 ID=MsG0880044675.01.T01:exon:19223;Parent=MsG0880044675.01.T01
Chr8 exon 47123177 47123408 47123177 ID=MsG0880044675.01.T01:exon:19222;Parent=MsG0880044675.01.T01
Chr8 CDS 47125360 47125382 47125360 ID=MsG0880044675.01.T01:cds;Parent=MsG0880044675.01.T01
Chr8 CDS 47124381 47124495 47124381 ID=MsG0880044675.01.T01:cds;Parent=MsG0880044675.01.T01
Chr8 CDS 47123811 47124112 47123811 ID=MsG0880044675.01.T01:cds;Parent=MsG0880044675.01.T01
Chr8 CDS 47123177 47123408 47123177 ID=MsG0880044675.01.T01:cds;Parent=MsG0880044675.01.T01
Gene Sequence

>MsG0880044675.01.T01

ATGGCTGTCAAAGTTTATATTGTGTACTACTCAATGTATGGACATGTGGAGAGACTAGCAGAAGAAATAAAGAAAGGGGCAGATTCCGTTGAAGGTGTTGAGGCCAAACTATGGCAGGCATGTATATTTATGTTTCTTGTTGTTAACATTTTCTTTGTTGAACATATATATGAGCAGGTACCAGAAATATTGCCAGAAGAGGTACTTGGTAAGATGAGAGCACCACCCAAGAGTGATGTACCAATTATTACCCCGAATGAGCTTTCTGAGGGTGATGGTTTTGTCTTTGGATTTCCAACAAGATTTGGAATGATGGCTGCTCAGTTTAAAACCTTTCTAGATGCAACTGGAGGTATATGGAAAACACAACAGCTTGCCGGTAAGCCTGCTGGAATCTTCTACAGCACCAGCTCCCAAGGCGGTGGACAAGAGACTACAGCGCTCACTGCTATAACTCAATTGGTTCATCATGGAATGCTATTTGTTCCAATTGGGTATACATTTGGTGCTGGAATGTTTGAGATGGAAGAAGTGAAAGGTGGAAGTCCATATGGTTCAGGAACATATGCTGGTGATGGATCAAGGCAGCCAACTAAGCTTGAGTTGGAACAAGCATTCCACCAGGGGATGTATATTGCCACAATCACAAAGAAGCTCAAGGAAACTGCATAA
Protein sequence

>MsG0880044675.01.T01

MAVKVYIVYYSMYGHVERLAEEIKKGADSVEGVEAKLWQACIFMFLVVNIFFVEHIYEQVPEILPEEVLGKMRAPPKSDVPIITPNELSEGDGFVFGFPTRFGMMAAQFKTFLDATGGIWKTQQLAGKPAGIFYSTSSQGGGQETTALTAITQLVHHGMLFVPIGYTFGAGMFEMEEVKGGSPYGSGTYAGDGSRQPTKLELEQAFHQGMYIATITKKLKETA*