AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880044960.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044960.01.T01 MTR_8g062990 80.590 407 28 5 5 362 47 451 0.0 632
MsG0880044960.01.T01 MTR_3g010820 79.853 407 31 5 5 362 47 451 0.0 627
MsG0880044960.01.T01 MTR_3g086440 63.480 408 95 7 5 362 47 450 5.87e-175 495
MsG0880044960.01.T01 MTR_8g042780 59.453 402 111 5 9 362 47 444 2.54e-170 484
MsG0880044960.01.T01 MTR_8g042770 58.374 406 119 6 5 362 48 451 1.47e-167 477
MsG0880044960.01.T01 MTR_8g042870 58.458 402 115 5 9 362 51 448 1.02e-166 474
MsG0880044960.01.T01 MTR_3g010850 56.934 411 123 7 2 362 28 434 1.96e-160 458
MsG0880044960.01.T01 MTR_8g042780 58.247 388 110 5 9 348 47 430 7.76e-160 455
MsG0880044960.01.T01 MTR_3g010850 57.143 406 121 7 5 362 46 446 4.31e-159 455
MsG0880044960.01.T01 MTR_8g042820 61.620 284 92 4 77 347 34 313 7.16e-122 354
MsG0880044960.01.T01 MTR_1157s0010 53.226 124 45 3 252 362 1 124 1.12e-33 122
MsG0880044960.01.T01 MTR_1194s0010 71.014 69 20 0 9 77 47 115 6.97e-30 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044960.01.T01 AT3G43790 50.485 412 144 7 5 362 45 450 1.58e-130 382
MsG0880044960.01.T01 AT3G43790 50.485 412 144 7 5 362 45 450 1.58e-130 382
MsG0880044960.01.T01 AT3G43790 50.242 414 146 7 5 364 45 452 2.43e-130 382
MsG0880044960.01.T01 AT3G43790 50.242 414 146 7 5 364 45 452 2.43e-130 382
MsG0880044960.01.T01 AT5G13750 48.921 417 145 7 3 362 44 449 4.03e-130 381
MsG0880044960.01.T01 AT5G13740 48.049 410 157 6 8 362 49 457 1.65e-129 380
MsG0880044960.01.T01 AT5G13740 47.837 393 149 6 8 345 49 440 6.82e-121 357
MsG0880044960.01.T01 AT5G13750 46.866 367 140 6 47 362 1 363 4.81e-108 322
MsG0880044960.01.T01 AT5G13750 46.486 370 148 5 3 324 44 411 1.49e-106 319
MsG0880044960.01.T01 AT5G13750 46.486 370 148 5 3 324 44 411 1.49e-106 319
MsG0880044960.01.T01 AT3G43790 48.501 367 129 7 5 317 45 405 1.63e-104 313
MsG0880044960.01.T01 AT5G13940 44.595 74 25 1 199 272 11 68 6.20e-13 70.5
MsG0880044960.01.T01 AT5G13940 44.595 74 25 1 199 272 162 219 7.33e-13 70.5

Find 88 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCAGCTTTGGGAGGTTATT+TGG 0.181938 8:+52089366 MsG0880044960.01.T01:CDS
GTATTACTTGGATGGATTTC+AGG 0.210002 8:+52091714 MsG0880044960.01.T01:CDS
CTTGATAGGTCTTCTCATTA+TGG 0.213255 8:+52090901 MsG0880044960.01.T01:intron
GAATCCTTTGGAAATAGATT+TGG 0.256895 8:-52089650 None:intergenic
TGGGGCATAGGTTTAATAAT+TGG 0.286368 8:+52089343 MsG0880044960.01.T01:CDS
TTTAATAATTGGACCAGCTT+TGG 0.287965 8:+52089354 MsG0880044960.01.T01:CDS
CACAACAATAGATGACATTA+AGG 0.296857 8:-52090518 None:intergenic
TTGATAGGTCTTCTCATTAT+GGG 0.308978 8:+52090902 MsG0880044960.01.T01:intron
CTTTCCTTACCAATATTTCA+TGG 0.317884 8:+52087991 MsG0880044960.01.T01:CDS
GAAATGGAAGGCAAGAAATA+TGG 0.321659 8:-52089802 None:intergenic
CAGCAGCAATTGCCTGCATC+TGG 0.327006 8:+52089845 MsG0880044960.01.T01:CDS
TTAAACTTACCATGAAATAT+TGG 0.332048 8:-52088000 None:intergenic
TAGAAATAAGCCAGTGATTA+TGG 0.333679 8:-52091740 None:intergenic
AATCCTTTGGAAATAGATTT+GGG 0.333774 8:-52089649 None:intergenic
TTCAAACCACCTAACCTTCT+AGG 0.336667 8:-52090933 None:intergenic
GTAAGATTTGCTCGCATCTC+CGG 0.354320 8:+52091168 MsG0880044960.01.T01:CDS
TTTCTCTAATGATGGGTATA+GGG 0.355287 8:-52091133 None:intergenic
ATTTCAGTTGAGTGCAGCTT+GGG 0.362624 8:+52089324 MsG0880044960.01.T01:intron
GAGATGCGAGCAAATCTTAC+AGG 0.370847 8:-52091165 None:intergenic
TTAATAATTGGACCAGCTTT+GGG 0.370918 8:+52089355 MsG0880044960.01.T01:CDS
GGTGATGTTCTTGCAATATC+AGG 0.378966 8:+52090975 MsG0880044960.01.T01:CDS
GCTTACATCATTGTATTACT+TGG 0.383287 8:+52091702 MsG0880044960.01.T01:CDS
ATGAAAACCTCTTCCTAAAC+TGG 0.393957 8:+52090494 MsG0880044960.01.T01:CDS
CGCAAAAGCTGATATTGAAA+TGG 0.395797 8:-52089818 None:intergenic
CGAGAAGAAAAGCAAGCTCT+TGG 0.397335 8:+52088994 MsG0880044960.01.T01:CDS
GCTTTAGAAACTGGAAGAAA+TGG 0.399632 8:+52090439 MsG0880044960.01.T01:CDS
TTGAGTGCAGCTTGGGGCAT+AGG 0.405086 8:+52089331 MsG0880044960.01.T01:CDS
GATGCTGAGGCTTTAGAAAC+TGG 0.406344 8:+52090430 MsG0880044960.01.T01:CDS
ATGACATTAAGGGCCAGTTT+AGG 0.411844 8:-52090507 None:intergenic
TAAGATTTGCTCGCATCTCC+GGG 0.414274 8:+52091169 MsG0880044960.01.T01:CDS
CCATCATTAGAGAAAACATT+TGG 0.419734 8:+52091141 MsG0880044960.01.T01:CDS
TTCAAAACAATTGGTCCAGC+TGG 0.422073 8:+52091932 MsG0880044960.01.T01:CDS
ATAATCCCTAAAATTGCAAC+AGG 0.426557 8:-52088412 None:intergenic
TATGGGCGGTTAGTCCTAGA+AGG 0.433043 8:+52090919 MsG0880044960.01.T01:CDS
TTTGGGAGGTTATTTGGCTC+AGG 0.435359 8:+52089372 MsG0880044960.01.T01:CDS
CGTCAAAGAGGGGCAGCTAA+TGG 0.438013 8:+52091884 MsG0880044960.01.T01:CDS
AATTAGTTGCACATCATACC+TGG 0.443351 8:-52092231 None:intergenic
ATCTTTGACATCAATATTGT+GGG 0.447497 8:+52088360 MsG0880044960.01.T01:CDS
TAAGGAAAGAGAGATGATAT+AGG 0.459962 8:-52087977 None:intergenic
ATGTCAATATTCAAAACAAT+TGG 0.466702 8:+52091923 MsG0880044960.01.T01:CDS
GCCAAATAACCTCCCAAAGC+TGG 0.467939 8:-52089367 None:intergenic
AATTGCCTGCATCTGGCTTC+CGG 0.470962 8:+52089852 MsG0880044960.01.T01:CDS
GATCTTTGACATCAATATTG+TGG 0.476557 8:+52088359 MsG0880044960.01.T01:CDS
CACACTGCACCACCTCCAGC+TGG 0.476747 8:-52091947 None:intergenic
GATTTCAGTTGAGTGCAGCT+TGG 0.495255 8:+52089323 MsG0880044960.01.T01:intron
GCGGTTAGTCCTAGAAGGTT+AGG 0.495354 8:+52090924 MsG0880044960.01.T01:CDS
ACATCATTGTATTACTTGGA+TGG 0.497712 8:+52091706 MsG0880044960.01.T01:CDS
AACAGGAACAACGTCAAAGA+GGG 0.500301 8:+52091873 MsG0880044960.01.T01:intron
ACTGGAAGAAATGGAAGAGC+AGG 0.502249 8:+52090448 MsG0880044960.01.T01:CDS
AAGTGCTTATGCTGGTTATG+TGG 0.512014 8:+52088219 MsG0880044960.01.T01:CDS
TAAAGCCTCAGCATCATCAA+TGG 0.512256 8:-52090422 None:intergenic
GCTAATGGCATTGCTATGAC+TGG 0.512615 8:+52091899 MsG0880044960.01.T01:CDS
CAATGGACTCATTGCTAAGA+GGG 0.519508 8:-52090405 None:intergenic
ACAACAATAGATGACATTAA+GGG 0.521167 8:-52090517 None:intergenic
TCAATGGACTCATTGCTAAG+AGG 0.531267 8:-52090406 None:intergenic
ATGATGGGTATAGGGAAAGC+TGG 0.534277 8:-52091125 None:intergenic
TTATAATATTTCTTATCAAG+AGG 0.540815 8:+52090558 MsG0880044960.01.T01:CDS
TTAAGGGCCAGTTTAGGAAG+AGG 0.546629 8:-52090501 None:intergenic
ACATACCGGAAGCCAGATGC+AGG 0.551614 8:-52089857 None:intergenic
CTTACCATGAAATATTGGTA+AGG 0.558322 8:-52087995 None:intergenic
ATGAATGCATCTTTCCTCCC+AGG 0.559191 8:+52092213 MsG0880044960.01.T01:CDS
TTGCATTAAACCACTATGAA+TGG 0.559717 8:-52091203 None:intergenic
GTAGGATCTGCATTCATGCT+TGG 0.560726 8:+52088334 MsG0880044960.01.T01:intron
TTGTTCATTCCAGATTAGCT+TGG 0.564282 8:+52092178 MsG0880044960.01.T01:intron
ATACCCAAATCTATTTCCAA+AGG 0.569665 8:+52089646 MsG0880044960.01.T01:CDS
ACAATTGGTCCAGCTGGAGG+TGG 0.572042 8:+52091938 MsG0880044960.01.T01:CDS
TTTCAGGCGACCATAATCAC+TGG 0.582428 8:+52091730 MsG0880044960.01.T01:CDS
AAAGCTGATATTGAAATGGA+AGG 0.590059 8:-52089814 None:intergenic
AACTTCACAACTGAGAATGT+TGG 0.592242 8:+52090954 MsG0880044960.01.T01:CDS
TAATATCGCAGAAAGGGAGG+AGG 0.596493 8:+52088192 MsG0880044960.01.T01:CDS
GAGGACATAAGTGCTTATGC+TGG 0.604864 8:+52088211 MsG0880044960.01.T01:CDS
AAACAGGAACAACGTCAAAG+AGG 0.605114 8:+52091872 MsG0880044960.01.T01:intron
GTTAGTCCTAGAAGGTTAGG+TGG 0.612008 8:+52090927 MsG0880044960.01.T01:CDS
AAAACAATTGGTCCAGCTGG+AGG 0.629594 8:+52091935 MsG0880044960.01.T01:CDS
AGTGCTTATGCTGGTTATGT+GGG 0.629937 8:+52088220 MsG0880044960.01.T01:CDS
ATAGGTCTTCTCATTATGGG+CGG 0.639660 8:+52090905 MsG0880044960.01.T01:intron
TTTCAGTTGAGTGCAGCTTG+GGG 0.641011 8:+52089325 MsG0880044960.01.T01:intron
GGAGTCATAGCAGATCGTTA+CGG 0.645391 8:+52088382 MsG0880044960.01.T01:CDS
ATAATTGGACCAGCTTTGGG+AGG 0.649173 8:+52089358 MsG0880044960.01.T01:CDS
TCTAATGCAAAATAGAGCAG+TGG 0.655511 8:+52091759 MsG0880044960.01.T01:CDS
ACAGGAACAACGTCAAAGAG+GGG 0.658067 8:+52091874 MsG0880044960.01.T01:intron
ATTAGTTGCACATCATACCT+GGG 0.658185 8:-52092230 None:intergenic
TCTTTGACATCAATATTGTG+GGG 0.669080 8:+52088361 MsG0880044960.01.T01:CDS
TGAGTCCATTGATGATGCTG+AGG 0.672523 8:+52090417 MsG0880044960.01.T01:CDS
TGGACTCATTGCTAAGAGGG+TGG 0.674388 8:-52090402 None:intergenic
TGAATGGTGAAATATTACCC+CGG 0.713785 8:-52091187 None:intergenic
AAGATTTGCTCGCATCTCCG+GGG 0.729111 8:+52091170 MsG0880044960.01.T01:CDS
AGTTGCACATCATACCTGGG+AGG 0.741119 8:-52092227 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATAAAAGAAGTTATCT+AGG - Chr8:52089178-52089197 None:intergenic 15.0%
!! ATAAACTAACTTTATTAAGT+AGG - Chr8:52090591-52090610 None:intergenic 15.0%
!! ATCATATTTAAAGAAAATTG+TGG + Chr8:52091826-52091845 MsG0880044960.01.T01:intron 15.0%
!! TAATTTATTTATATCACAAC+CGG - Chr8:52090113-52090132 None:intergenic 15.0%
!! TTATAATATTTCTTATCAAG+AGG + Chr8:52090558-52090577 MsG0880044960.01.T01:CDS 15.0%
!!! TACTTAATAAAGTTAGTTTA+TGG + Chr8:52090590-52090609 MsG0880044960.01.T01:intron 15.0%
!! AGTCAATTTATATATACTCA+AGG - Chr8:52089216-52089235 None:intergenic 20.0%
!! ATGTCAATATTCAAAACAAT+TGG + Chr8:52091923-52091942 MsG0880044960.01.T01:CDS 20.0%
!! CACAAAATAAAGTATATCTA+GGG - Chr8:52091025-52091044 None:intergenic 20.0%
!! CTATGTTTGAATATATAAGA+AGG - Chr8:52089540-52089559 None:intergenic 20.0%
!! GAACTGATATTTCATATAAT+AGG + Chr8:52090848-52090867 MsG0880044960.01.T01:intron 20.0%
!! TAATATATATGTCATGATCA+AGG + Chr8:52089489-52089508 MsG0880044960.01.T01:intron 20.0%
!! TGATCATGACATATATATTA+AGG - Chr8:52089489-52089508 None:intergenic 20.0%
!! TGTAAAATAAAGTGAATACT+TGG + Chr8:52092069-52092088 MsG0880044960.01.T01:intron 20.0%
!! TTAAACTTACCATGAAATAT+TGG - Chr8:52088003-52088022 None:intergenic 20.0%
!!! GTATTCACTTTATTTTACAA+AGG - Chr8:52092068-52092087 None:intergenic 20.0%
!!! TTAAATATGATCTCAACTTT+TGG - Chr8:52091817-52091836 None:intergenic 20.0%
!!! TTTTTTCTTGGATGTTTAAA+TGG + Chr8:52088808-52088827 MsG0880044960.01.T01:intron 20.0%
! AAAACTATATTCGCTCTATT+TGG - Chr8:52088690-52088709 None:intergenic 25.0%
! AAAGAAAATTGTGGCATAAA+TGG + Chr8:52091835-52091854 MsG0880044960.01.T01:intron 25.0%
! ACAACAATAGATGACATTAA+GGG - Chr8:52090520-52090539 None:intergenic 25.0%
! ACCATTTAATCACAATATAG+CGG + Chr8:52090154-52090173 MsG0880044960.01.T01:intron 25.0%
! AGATTGTAGACATATGAAAA+TGG + Chr8:52089447-52089466 MsG0880044960.01.T01:intron 25.0%
! ATACTGTTCACATTAAATGT+TGG - Chr8:52088151-52088170 None:intergenic 25.0%
! ATCTTTGACATCAATATTGT+GGG + Chr8:52088360-52088379 MsG0880044960.01.T01:CDS 25.0%
! ATGAAGATAAAACACATCAA+AGG - Chr8:52088273-52088292 None:intergenic 25.0%
! CTAACTTTATTAAGTAGGAA+TGG - Chr8:52090586-52090605 None:intergenic 25.0%
! GCAAATTTCAGATAAATCAA+TGG - Chr8:52091979-52091998 None:intergenic 25.0%
! GCACAAAATAAAGTATATCT+AGG - Chr8:52091026-52091045 None:intergenic 25.0%
! TAATATTTCACCATTCATAG+TGG + Chr8:52091193-52091212 MsG0880044960.01.T01:intron 25.0%
! TATCACTGTAAAAATGTTGT+AGG + Chr8:52088316-52088335 MsG0880044960.01.T01:intron 25.0%
! TATTGTTAGAATCATAGTCT+AGG - Chr8:52091666-52091685 None:intergenic 25.0%
! TCAAATCAGTAATAAACTTG+AGG - Chr8:52089931-52089950 None:intergenic 25.0%
! TGGAATGAAATAGTTTAGAA+TGG - Chr8:52091797-52091816 None:intergenic 25.0%
! TTTCATATGTCTACAATCTA+AGG - Chr8:52089446-52089465 None:intergenic 25.0%
!! AACATTTTTACAGTGATAGT+AGG - Chr8:52088314-52088333 None:intergenic 25.0%
!! AATCCTTTGGAAATAGATTT+GGG - Chr8:52089652-52089671 None:intergenic 25.0%
!! ATCATTTTCAACACACTATT+TGG + Chr8:52088749-52088768 MsG0880044960.01.T01:intron 25.0%
!! ATGATTTCTATTTGAAGTGT+CGG + Chr8:52090747-52090766 MsG0880044960.01.T01:intron 25.0%
!! ATTTCCAAAGGATTCTTTTT+GGG + Chr8:52089658-52089677 MsG0880044960.01.T01:CDS 25.0%
!! CAAATGTTTTCTCTAATGAT+GGG - Chr8:52091143-52091162 None:intergenic 25.0%
!! TATTTCCAAAGGATTCTTTT+TGG + Chr8:52089657-52089676 MsG0880044960.01.T01:CDS 25.0%
!! TCTGAAATTTGCTTATCAAT+AGG + Chr8:52091987-52092006 MsG0880044960.01.T01:intron 25.0%
!!! AATTTTTTCATACGCTATCA+TGG - Chr8:52088571-52088590 None:intergenic 25.0%
!!! AGATTTTAATATCGCAGAAA+GGG + Chr8:52088186-52088205 MsG0880044960.01.T01:CDS 25.0%
!!! AGTTTATTACTGATTTGATG+TGG + Chr8:52089933-52089952 MsG0880044960.01.T01:intron 25.0%
!!! TATCTAAAGTTGCTACATTT+TGG + Chr8:52088115-52088134 MsG0880044960.01.T01:intron 25.0%
!!! TTATTTCTTTGAAGTATCTC+TGG + Chr8:52088069-52088088 MsG0880044960.01.T01:intron 25.0%
AAAGCTGATATTGAAATGGA+AGG - Chr8:52089817-52089836 None:intergenic 30.0%
AATTCAAATTACCTCGAGAA+CGG - Chr8:52091521-52091540 None:intergenic 30.0%
ACATCATTCTACTTCTTGAT+AGG + Chr8:52090887-52090906 MsG0880044960.01.T01:intron 30.0%
ACATCATTGTATTACTTGGA+TGG + Chr8:52091706-52091725 MsG0880044960.01.T01:CDS 30.0%
ATAAAAAGGGAAGTAAAAGC+AGG - Chr8:52090290-52090309 None:intergenic 30.0%
ATAATCCCTAAAATTGCAAC+AGG - Chr8:52088415-52088434 None:intergenic 30.0%
ATACCCAAATCTATTTCCAA+AGG + Chr8:52089646-52089665 MsG0880044960.01.T01:CDS 30.0%
ATCCAATCAGATATACATAC+CGG - Chr8:52089874-52089893 None:intergenic 30.0%
ATGTGGTATCAGTAAAAGTA+GGG + Chr8:52089950-52089969 MsG0880044960.01.T01:intron 30.0%
CAAAACATAAATCTTGTTGC+AGG + Chr8:52089776-52089795 MsG0880044960.01.T01:intron 30.0%
CACAACAATAGATGACATTA+AGG - Chr8:52090521-52090540 None:intergenic 30.0%
CATATGATTTCTCTCTGATA+TGG - Chr8:52088892-52088911 None:intergenic 30.0%
CCATCATTAGAGAAAACATT+TGG + Chr8:52091141-52091160 MsG0880044960.01.T01:CDS 30.0%
CTTACCATGAAATATTGGTA+AGG - Chr8:52087998-52088017 None:intergenic 30.0%
CTTTCCTTACCAATATTTCA+TGG + Chr8:52087991-52088010 MsG0880044960.01.T01:CDS 30.0%
GAAACTGCATCAATAATGAT+TGG - Chr8:52091423-52091442 None:intergenic 30.0%
GAGAAGCAATATTAATCACT+AGG - Chr8:52091352-52091371 None:intergenic 30.0%
GATCTTTGACATCAATATTG+TGG + Chr8:52088359-52088378 MsG0880044960.01.T01:CDS 30.0%
GATTGTTAACTTCAGTCTAA+TGG - Chr8:52091599-52091618 None:intergenic 30.0%
GCTTACATCATTGTATTACT+TGG + Chr8:52091702-52091721 MsG0880044960.01.T01:CDS 30.0%
GTAAATTTGCAAAAGAGGTA+TGG - Chr8:52091294-52091313 None:intergenic 30.0%
TAAAAAGGGAAGTAAAAGCA+GGG - Chr8:52090289-52090308 None:intergenic 30.0%
TAAGGAAAGAGAGATGATAT+AGG - Chr8:52087980-52087999 None:intergenic 30.0%
TAGAAATAAGCCAGTGATTA+TGG - Chr8:52091743-52091762 None:intergenic 30.0%
TCATATTGACATTTCATGAG+CGG + Chr8:52090193-52090212 MsG0880044960.01.T01:intron 30.0%
TCTTTGACATCAATATTGTG+GGG + Chr8:52088361-52088380 MsG0880044960.01.T01:CDS 30.0%
TTAATAATTGGACCAGCTTT+GGG + Chr8:52089355-52089374 MsG0880044960.01.T01:CDS 30.0%
TTGATAGGTCTTCTCATTAT+GGG + Chr8:52090902-52090921 MsG0880044960.01.T01:intron 30.0%
TTGCATTAAACCACTATGAA+TGG - Chr8:52091206-52091225 None:intergenic 30.0%
TTTAATAATTGGACCAGCTT+TGG + Chr8:52089354-52089373 MsG0880044960.01.T01:CDS 30.0%
! ACCGGTAATTTTCTAATCAA+CGG - Chr8:52090095-52090114 None:intergenic 30.0%
! AGAAAACCTGTTGCAATTTT+AGG + Chr8:52088406-52088425 MsG0880044960.01.T01:CDS 30.0%
! AGATTTGGGTATTTTACAGT+TGG - Chr8:52089638-52089657 None:intergenic 30.0%
! CCAAATGTTTTCTCTAATGA+TGG - Chr8:52091144-52091163 None:intergenic 30.0%
! CTATTTTGTCACCTTATGTA+GGG + Chr8:52091264-52091283 MsG0880044960.01.T01:intron 30.0%
! GAAAACCTGTTGCAATTTTA+GGG + Chr8:52088407-52088426 MsG0880044960.01.T01:CDS 30.0%
! GAATCCTTTGGAAATAGATT+TGG - Chr8:52089653-52089672 None:intergenic 30.0%
! GGATCTATTTTCATCACAAA+AGG - Chr8:52089414-52089433 None:intergenic 30.0%
! TATGGAAGTATGAAACATTC+AGG - Chr8:52088874-52088893 None:intergenic 30.0%
! TCAGGTATTATTGTGTTGAT+TGG - Chr8:52088856-52088875 None:intergenic 30.0%
!! GAGATTTTAATATCGCAGAA+AGG + Chr8:52088185-52088204 MsG0880044960.01.T01:CDS 30.0%
!! TGCAATTTTAGGGATTATCT+CGG + Chr8:52088417-52088436 MsG0880044960.01.T01:CDS 30.0%
!! TTTCTCTAATGATGGGTATA+GGG - Chr8:52091136-52091155 None:intergenic 30.0%
!!! ATTTTAGTTTGTCTACTCGT+AGG + Chr8:52088484-52088503 MsG0880044960.01.T01:intron 30.0%
!!! TTTTCTCTAATGATGGGTAT+AGG - Chr8:52091137-52091156 None:intergenic 30.0%
AACTTCACAACTGAGAATGT+TGG + Chr8:52090954-52090973 MsG0880044960.01.T01:CDS 35.0%
AAGGGGTAAATTTGCAAAAG+AGG - Chr8:52091299-52091318 None:intergenic 35.0%
AATGATCAATGGTCAGGTAT+TGG + Chr8:52091090-52091109 MsG0880044960.01.T01:intron 35.0%
AGCTCTTCTCAAATGATCAA+TGG + Chr8:52091079-52091098 MsG0880044960.01.T01:intron 35.0%
AGTAAGCCTGTTGTTAGAAA+AGG - Chr8:52088960-52088979 None:intergenic 35.0%
AGTTCTTTCAGATTCCACTT+TGG + Chr8:52089992-52090011 MsG0880044960.01.T01:intron 35.0%
ATGAAAACCTCTTCCTAAAC+TGG + Chr8:52090494-52090513 MsG0880044960.01.T01:CDS 35.0%
CACATGTGTCAATGCTTTAT+AGG - Chr8:52089074-52089093 None:intergenic 35.0%
CGCAAAAGCTGATATTGAAA+TGG - Chr8:52089821-52089840 None:intergenic 35.0%
CTTGATAGGTCTTCTCATTA+TGG + Chr8:52090901-52090920 MsG0880044960.01.T01:intron 35.0%
GAAATGGAAGGCAAGAAATA+TGG - Chr8:52089805-52089824 None:intergenic 35.0%
GATGTGGTATCAGTAAAAGT+AGG + Chr8:52089949-52089968 MsG0880044960.01.T01:intron 35.0%
GCCGCTATATTGTGATTAAA+TGG - Chr8:52090158-52090177 None:intergenic 35.0%
GCTTTCCTTCTATACATCAA+TGG + Chr8:52090784-52090803 MsG0880044960.01.T01:intron 35.0%
TATTCGCGTGAGCATAAAAA+GGG - Chr8:52090303-52090322 None:intergenic 35.0%
TCTAATGCAAAATAGAGCAG+TGG + Chr8:52091759-52091778 MsG0880044960.01.T01:CDS 35.0%
TGAATGGTGAAATATTACCC+CGG - Chr8:52091190-52091209 None:intergenic 35.0%
TGACAGTATCATGTCAATGT+CGG + Chr8:52090722-52090741 MsG0880044960.01.T01:intron 35.0%
TGGGGCATAGGTTTAATAAT+TGG + Chr8:52089343-52089362 MsG0880044960.01.T01:CDS 35.0%
TGTCAATGCTTTATAGGTGT+CGG - Chr8:52089068-52089087 None:intergenic 35.0%
TGTGGTATCAGTAAAAGTAG+GGG + Chr8:52089951-52089970 MsG0880044960.01.T01:intron 35.0%
TTAATTTACAACCGTTCTCG+AGG + Chr8:52091507-52091526 MsG0880044960.01.T01:intron 35.0%
TTATTCGCGTGAGCATAAAA+AGG - Chr8:52090304-52090323 None:intergenic 35.0%
TTCCGGTATGTATATCTGAT+TGG + Chr8:52089869-52089888 MsG0880044960.01.T01:intron 35.0%
TTCTCAAATGATCAATGGTC+AGG + Chr8:52091084-52091103 MsG0880044960.01.T01:intron 35.0%
TTGTCCCAAAAAGAATCCTT+TGG - Chr8:52089665-52089684 None:intergenic 35.0%
! AATAGAGCAGTGGTAATGTT+TGG + Chr8:52091769-52091788 MsG0880044960.01.T01:intron 35.0%
! GCCGTTGATTAGAAAATTAC+CGG + Chr8:52090091-52090110 MsG0880044960.01.T01:intron 35.0%
! GGAAGAGGTTTTCATCTTTT+TGG - Chr8:52090489-52090508 None:intergenic 35.0%
! GTATTACTTGGATGGATTTC+AGG + Chr8:52091714-52091733 MsG0880044960.01.T01:CDS 35.0%
! TACAATCTAAGGCTATTCTC+AGG - Chr8:52089435-52089454 None:intergenic 35.0%
! TCACATCCTTTTCTAACAAC+AGG + Chr8:52088951-52088970 MsG0880044960.01.T01:intron 35.0%
! TTGTTCATTCCAGATTAGCT+TGG + Chr8:52092178-52092197 MsG0880044960.01.T01:intron 35.0%
! TTTTAATATCGCAGAAAGGG+AGG + Chr8:52088189-52088208 MsG0880044960.01.T01:CDS 35.0%
! TTTTTGTGACCAAGCTAATC+TGG - Chr8:52092190-52092209 None:intergenic 35.0%
!! AGTTTGGTCTTGTAACATCA+AGG - Chr8:52091549-52091568 None:intergenic 35.0%
!! CTATAAAGCATTGACACATG+TGG + Chr8:52089072-52089091 MsG0880044960.01.T01:intron 35.0%
!! GATTAGCTTGGTCACAAAAA+CGG + Chr8:52092190-52092209 MsG0880044960.01.T01:intron 35.0%
!! GCTATTTTGTCACCTTATGT+AGG + Chr8:52091263-52091282 MsG0880044960.01.T01:intron 35.0%
!! GCTTTAGAAACTGGAAGAAA+TGG + Chr8:52090439-52090458 MsG0880044960.01.T01:CDS 35.0%
!! GGATGTTTAAATGGTTTGCT+TGG + Chr8:52088817-52088836 MsG0880044960.01.T01:intron 35.0%
!! GGCATGTTGATTTGAAAAAC+AGG + Chr8:52091856-52091875 MsG0880044960.01.T01:intron 35.0%
!! GTTTGGTCTTGTAACATCAA+GGG - Chr8:52091548-52091567 None:intergenic 35.0%
!!! AAGTTGCTACATTTTGGCTA+AGG + Chr8:52088121-52088140 MsG0880044960.01.T01:intron 35.0%
!!! TGTAGCGACATTTTTTGTGT+AGG + Chr8:52090250-52090269 MsG0880044960.01.T01:intron 35.0%
AAACAGGAACAACGTCAAAG+AGG + Chr8:52091872-52091891 MsG0880044960.01.T01:intron 40.0%
AACAGGAACAACGTCAAAGA+GGG + Chr8:52091873-52091892 MsG0880044960.01.T01:intron 40.0%
ACGCTATCATGGACAACTTA+TGG - Chr8:52088560-52088579 None:intergenic 40.0%
ATAGGTCTTCTCATTATGGG+CGG + Chr8:52090905-52090924 MsG0880044960.01.T01:intron 40.0%
ATGACATTAAGGGCCAGTTT+AGG - Chr8:52090510-52090529 None:intergenic 40.0%
ATTTCAGTTGAGTGCAGCTT+GGG + Chr8:52089324-52089343 MsG0880044960.01.T01:intron 40.0%
CAGAGCCATTGATGTATAGA+AGG - Chr8:52090792-52090811 None:intergenic 40.0%
CAGATTATCTACGATTCGCT+TGG - Chr8:52089745-52089764 None:intergenic 40.0%
CTTCAGTCTAATGGTTCATG+AGG - Chr8:52091590-52091609 None:intergenic 40.0%
GACAGTATCATGTCAATGTC+GGG + Chr8:52090723-52090742 MsG0880044960.01.T01:intron 40.0%
GGTATGGATAACCCTACATA+AGG - Chr8:52091278-52091297 None:intergenic 40.0%
GGTGATGTTCTTGCAATATC+AGG + Chr8:52090975-52090994 MsG0880044960.01.T01:CDS 40.0%
TAAAGCCTCAGCATCATCAA+TGG - Chr8:52090425-52090444 None:intergenic 40.0%
TCTAATGGTTCATGAGGTGT+CGG - Chr8:52091584-52091603 None:intergenic 40.0%
TGTCATGTTCGTGTATGCAT+CGG - Chr8:52090657-52090676 None:intergenic 40.0%
TTCAAACCACCTAACCTTCT+AGG - Chr8:52090936-52090955 None:intergenic 40.0%
! AAGTGCTTATGCTGGTTATG+TGG + Chr8:52088219-52088238 MsG0880044960.01.T01:CDS 40.0%
! AGTGCTTATGCTGGTTATGT+GGG + Chr8:52088220-52088239 MsG0880044960.01.T01:CDS 40.0%
! CAATGGACTCATTGCTAAGA+GGG - Chr8:52090408-52090427 None:intergenic 40.0%
! TCAATGGACTCATTGCTAAG+AGG - Chr8:52090409-52090428 None:intergenic 40.0%
! TGAAGTATCTCTGGCACAAT+AGG + Chr8:52088078-52088097 MsG0880044960.01.T01:intron 40.0%
! TGTATGCATCGGTGCTTTAT+AGG - Chr8:52090646-52090665 None:intergenic 40.0%
!! CAAGAGCTTGCTTTTCTTCT+CGG - Chr8:52088996-52089015 None:intergenic 40.0%
!! CAGAAAGCATTGCTATGAAG+GGG - Chr8:52091316-52091335 None:intergenic 40.0%
!! CCAGAAAGCATTGCTATGAA+GGG - Chr8:52091317-52091336 None:intergenic 40.0%
!! TCCAGAAAGCATTGCTATGA+AGG - Chr8:52091318-52091337 None:intergenic 40.0%
!! TGCTTGTTTCTGAACCAAAG+TGG - Chr8:52090009-52090028 None:intergenic 40.0%
!!! GTTACAACGCGGTTTTTTCT+TGG + Chr8:52088796-52088815 MsG0880044960.01.T01:intron 40.0%
!!! TTTGGCCTTAGCACAAGTTT+TGG + Chr8:52088767-52088786 MsG0880044960.01.T01:intron 40.0%
AATGTTTCCTACAGTCGAGC+AGG - Chr8:52090376-52090395 None:intergenic 45.0%
ACAGGAACAACGTCAAAGAG+GGG + Chr8:52091874-52091893 MsG0880044960.01.T01:intron 45.0%
ACTGGAAGAAATGGAAGAGC+AGG + Chr8:52090448-52090467 MsG0880044960.01.T01:CDS 45.0%
ATGAATGCATCTTTCCTCCC+AGG + Chr8:52092213-52092232 MsG0880044960.01.T01:CDS 45.0%
CCCTTCATAGCAATGCTTTC+TGG + Chr8:52091314-52091333 MsG0880044960.01.T01:intron 45.0%
CGAGAAGAAAAGCAAGCTCT+TGG + Chr8:52088994-52089013 MsG0880044960.01.T01:CDS 45.0%
GAGATGCGAGCAAATCTTAC+AGG - Chr8:52091168-52091187 None:intergenic 45.0%
GAGGACATAAGTGCTTATGC+TGG + Chr8:52088211-52088230 MsG0880044960.01.T01:CDS 45.0%
GATTTCAGTTGAGTGCAGCT+TGG + Chr8:52089323-52089342 MsG0880044960.01.T01:intron 45.0%
GCCATCCAAAACTTGTGCTA+AGG - Chr8:52088775-52088794 None:intergenic 45.0%
GCTAATGGCATTGCTATGAC+TGG + Chr8:52091899-52091918 MsG0880044960.01.T01:CDS 45.0%
GGAGTCATAGCAGATCGTTA+CGG + Chr8:52088382-52088401 MsG0880044960.01.T01:CDS 45.0%
GTAGGATCTGCATTCATGCT+TGG + Chr8:52088334-52088353 MsG0880044960.01.T01:intron 45.0%
GTTAGTCCTAGAAGGTTAGG+TGG + Chr8:52090927-52090946 MsG0880044960.01.T01:CDS 45.0%
GTTTCACCATCTCATGTCTC+AGG + Chr8:52089259-52089278 MsG0880044960.01.T01:intron 45.0%
TAATATCGCAGAAAGGGAGG+AGG + Chr8:52088192-52088211 MsG0880044960.01.T01:CDS 45.0%
TTAAGGGCCAGTTTAGGAAG+AGG - Chr8:52090504-52090523 None:intergenic 45.0%
TTTCAGGCGACCATAATCAC+TGG + Chr8:52091730-52091749 MsG0880044960.01.T01:CDS 45.0%
TTTCAGTTGAGTGCAGCTTG+GGG + Chr8:52089325-52089344 MsG0880044960.01.T01:intron 45.0%
TTTGGATGGCTGTTACAACG+CGG + Chr8:52088785-52088804 MsG0880044960.01.T01:intron 45.0%
! GTAAGATTTGCTCGCATCTC+CGG + Chr8:52091168-52091187 MsG0880044960.01.T01:CDS 45.0%
! TAAGATTTGCTCGCATCTCC+GGG + Chr8:52091169-52091188 MsG0880044960.01.T01:CDS 45.0%
! TGTCGGACATCGACACTTTT+CGG - Chr8:52089051-52089070 None:intergenic 45.0%
! TTTGGGAGGTTATTTGGCTC+AGG + Chr8:52089372-52089391 MsG0880044960.01.T01:CDS 45.0%
!! ACCAGCTTTGGGAGGTTATT+TGG + Chr8:52089366-52089385 MsG0880044960.01.T01:CDS 45.0%
!! ATAATTGGACCAGCTTTGGG+AGG + Chr8:52089358-52089377 MsG0880044960.01.T01:CDS 45.0%
!! ATGATGGGTATAGGGAAAGC+TGG - Chr8:52091128-52091147 None:intergenic 45.0%
!! GATGCTGAGGCTTTAGAAAC+TGG + Chr8:52090430-52090449 MsG0880044960.01.T01:CDS 45.0%
!! GTGTTGATTGGCACCTTCAT+TGG - Chr8:52088844-52088863 None:intergenic 45.0%
!! TGAGTCCATTGATGATGCTG+AGG + Chr8:52090417-52090436 MsG0880044960.01.T01:CDS 45.0%
!! TGGTTTGCTTGGACCAATGA+AGG + Chr8:52088828-52088847 MsG0880044960.01.T01:intron 45.0%
!!! GCCTTAGCACAAGTTTTGGA+TGG + Chr8:52088771-52088790 MsG0880044960.01.T01:intron 45.0%
AGTTGCACATCATACCTGGG+AGG - Chr8:52092230-52092249 None:intergenic 50.0%
ATGCATACCTGCTCGACTGT+AGG + Chr8:52090366-52090385 MsG0880044960.01.T01:intron 50.0%
GAGAGACCTGAGACATGAGA+TGG - Chr8:52089268-52089287 None:intergenic 50.0%
GCCAAATAACCTCCCAAAGC+TGG - Chr8:52089370-52089389 None:intergenic 50.0%
TGGACTCATTGCTAAGAGGG+TGG - Chr8:52090405-52090424 None:intergenic 50.0%
! AAGATTTGCTCGCATCTCCG+GGG + Chr8:52091170-52091189 MsG0880044960.01.T01:CDS 50.0%
! AATTGCCTGCATCTGGCTTC+CGG + Chr8:52089852-52089871 MsG0880044960.01.T01:CDS 50.0%
! GCGGTTAGTCCTAGAAGGTT+AGG + Chr8:52090924-52090943 MsG0880044960.01.T01:CDS 50.0%
! TATGGGCGGTTAGTCCTAGA+AGG + Chr8:52090919-52090938 MsG0880044960.01.T01:CDS 50.0%
ACATACCGGAAGCCAGATGC+AGG - Chr8:52089860-52089879 None:intergenic 55.0%
CAGCAGCAATTGCCTGCATC+TGG + Chr8:52089845-52089864 MsG0880044960.01.T01:CDS 55.0%
CGTCAAAGAGGGGCAGCTAA+TGG + Chr8:52091884-52091903 MsG0880044960.01.T01:CDS 55.0%
TCGGCTCAGTGGCAAGAGTT+TGG - Chr8:52091565-52091584 None:intergenic 55.0%
TTGAGTGCAGCTTGGGGCAT+AGG + Chr8:52089331-52089350 MsG0880044960.01.T01:CDS 55.0%
!! TTCATGAGGTGTCGGCTCAG+TGG - Chr8:52091576-52091595 None:intergenic 55.0%
CACACTGCACCACCTCCAGC+TGG - Chr8:52091950-52091969 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 52087947 52092251 52087947 ID=MsG0880044960.01;Name=MsG0880044960.01
Chr8 mRNA 52087947 52092251 52087947 ID=MsG0880044960.01.T01;Parent=MsG0880044960.01;Name=MsG0880044960.01.T01;_AED=0.41;_eAED=0.42;_QI=0|0.83|0.61|1|0.66|0.61|13|0|366
Chr8 exon 52087947 52088012 52087947 ID=MsG0880044960.01.T01:exon:22226;Parent=MsG0880044960.01.T01
Chr8 exon 52088181 52088241 52088181 ID=MsG0880044960.01.T01:exon:22227;Parent=MsG0880044960.01.T01
Chr8 exon 52088338 52088438 52088338 ID=MsG0880044960.01.T01:exon:22228;Parent=MsG0880044960.01.T01
Chr8 exon 52088973 52089026 52088973 ID=MsG0880044960.01.T01:exon:22229;Parent=MsG0880044960.01.T01
Chr8 exon 52089331 52089393 52089331 ID=MsG0880044960.01.T01:exon:22230;Parent=MsG0880044960.01.T01
Chr8 exon 52089635 52089684 52089635 ID=MsG0880044960.01.T01:exon:22231;Parent=MsG0880044960.01.T01
Chr8 exon 52089798 52089873 52089798 ID=MsG0880044960.01.T01:exon:22232;Parent=MsG0880044960.01.T01
Chr8 exon 52090388 52090579 52090388 ID=MsG0880044960.01.T01:exon:22233;Parent=MsG0880044960.01.T01
Chr8 exon 52090909 52090996 52090909 ID=MsG0880044960.01.T01:exon:22234;Parent=MsG0880044960.01.T01
Chr8 exon 52091106 52091211 52091106 ID=MsG0880044960.01.T01:exon:22235;Parent=MsG0880044960.01.T01
Chr8 exon 52091687 52091780 52091687 ID=MsG0880044960.01.T01:exon:22236;Parent=MsG0880044960.01.T01
Chr8 exon 52091878 52091966 52091878 ID=MsG0880044960.01.T01:exon:22237;Parent=MsG0880044960.01.T01
Chr8 exon 52092191 52092251 52092191 ID=MsG0880044960.01.T01:exon:22238;Parent=MsG0880044960.01.T01
Chr8 CDS 52087947 52088012 52087947 ID=MsG0880044960.01.T01:cds;Parent=MsG0880044960.01.T01
Chr8 CDS 52088181 52088241 52088181 ID=MsG0880044960.01.T01:cds;Parent=MsG0880044960.01.T01
Chr8 CDS 52088338 52088438 52088338 ID=MsG0880044960.01.T01:cds;Parent=MsG0880044960.01.T01
Chr8 CDS 52088973 52089026 52088973 ID=MsG0880044960.01.T01:cds;Parent=MsG0880044960.01.T01
Chr8 CDS 52089331 52089393 52089331 ID=MsG0880044960.01.T01:cds;Parent=MsG0880044960.01.T01
Chr8 CDS 52089635 52089684 52089635 ID=MsG0880044960.01.T01:cds;Parent=MsG0880044960.01.T01
Chr8 CDS 52089798 52089873 52089798 ID=MsG0880044960.01.T01:cds;Parent=MsG0880044960.01.T01
Chr8 CDS 52090388 52090579 52090388 ID=MsG0880044960.01.T01:cds;Parent=MsG0880044960.01.T01
Chr8 CDS 52090909 52090996 52090909 ID=MsG0880044960.01.T01:cds;Parent=MsG0880044960.01.T01
Chr8 CDS 52091106 52091211 52091106 ID=MsG0880044960.01.T01:cds;Parent=MsG0880044960.01.T01
Chr8 CDS 52091687 52091780 52091687 ID=MsG0880044960.01.T01:cds;Parent=MsG0880044960.01.T01
Chr8 CDS 52091878 52091966 52091878 ID=MsG0880044960.01.T01:cds;Parent=MsG0880044960.01.T01
Chr8 CDS 52092191 52092251 52092191 ID=MsG0880044960.01.T01:cds;Parent=MsG0880044960.01.T01
Gene Sequence

>MsG0880044960.01.T01

ATGTCATTGTATTTGTGCTTTACAGCTCTGCCTATATCATCTCTCTTTCCTTACCAATATTTCATGATAAGAGATTTTAATATCGCAGAAAGGGAGGAGGACATAAGTGCTTATGCTGGTTATGTGGGATCTGCATTCATGCTTGGAAGATCTTTGACATCAATATTGTGGGGAGTCATAGCAGATCGTTACGGTAGAAAACCTGTTGCAATTTTAGGGATTATCTCGGCTTACTGCTCTGAAATTTTCCGAGAAGAAAAGCAAGCTCTTGGACTCTCAACTTTGAGTGCAGCTTGGGGCATAGGTTTAATAATTGGACCAGCTTTGGGAGGTTATTTGGCTCAGCCAACTGTAAAATACCCAAATCTATTTCCAAAGGATTCTTTTTGGGACAAGTTTCCATATTTCTTGCCTTCCATTTCAATATCAGCTTTTGCGTTTGCAGCAGCAATTGCCTGCATCTGGCTTCCGGAAACATTACACAACCACCCTCTTAGCAATGAGTCCATTGATGATGCTGAGGCTTTAGAAACTGGAAGAAATGGAAGAGCAGGCAAAGACAAGATAATCCAAAAAGATGAAAACCTCTTCCTAAACTGGCCCTTAATGTCATCTATTGTTGTGTATTGCATTTTCTCACTTTATAATATTTCTTATCAAGAGGTCTTCTCATTATGGGCGGTTAGTCCTAGAAGGTTAGGTGGTTTGAACTTCACAACTGAGAATGTTGGTGATGTTCTTGCAATATCAGGTATTGGTCTTATTGTCTACCAGCTTTCCCTATACCCATCATTAGAGAAAACATTTGGACCTGTAAGATTTGCTCGCATCTCCGGGGTAATATTTCACCATTCATATTATTTATATTACAAGCTTACATCATTGTATTACTTGGATGGATTTCAGGCGACCATAATCACTGGCTTATTTCTAATGCAAAATAGAGCAGTGGAACAACGTCAAAGAGGGGCAGCTAATGGCATTGCTATGACTGGAATGTCAATATTCAAAACAATTGGTCCAGCTGGAGGTGGTGCAGTATTAGCTTGGTCACAAAAACGGATGAATGCATCTTTCCTCCCAGGTATGATGTGCAACTAA
Protein sequence

>MsG0880044960.01.T01

MSLYLCFTALPISSLFPYQYFMIRDFNIAEREEDISAYAGYVGSAFMLGRSLTSILWGVIADRYGRKPVAILGIISAYCSEIFREEKQALGLSTLSAAWGIGLIIGPALGGYLAQPTVKYPNLFPKDSFWDKFPYFLPSISISAFAFAAAIACIWLPETLHNHPLSNESIDDAEALETGRNGRAGKDKIIQKDENLFLNWPLMSSIVVYCIFSLYNISYQEVFSLWAVSPRRLGGLNFTTENVGDVLAISGIGLIVYQLSLYPSLEKTFGPVRFARISGVIFHHSYYLYYKLTSLYYLDGFQATIITGLFLMQNRAVEQRQRGAANGIAMTGMSIFKTIGPAGGGAVLAWSQKRMNASFLPGMMCN*