AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880044961.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 14 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTGAATATCAGGGCTAAA+TGG 0.324352 8:-52095995 MsG0880044961.01.T01:intron
TCGCAACCTCATTAAGATAA+TGG 0.326080 8:-52098813 MsG0880044961.01.T01:CDS
CATCTCGACTATTAGATTGC+TGG 0.424112 8:+52096560 None:intergenic
TGAAAAGTCTGATGAACAAC+AGG 0.444247 8:-52096528 MsG0880044961.01.T01:three_prime_UTR
GCGAGCGAGTTGTTCATTGT+TGG 0.477904 8:+52098724 None:intergenic
AATCATCCATTATCTTAATG+AGG 0.480637 8:+52098807 None:intergenic
ATTAGATTGCTGGCCATTGT+CGG 0.493267 8:+52096570 None:intergenic
ACCATGGCTGAGAGCGGTGG+AGG 0.497782 8:+52098657 None:intergenic
TCCTCCACCGCTCTCAGCCA+TGG 0.503853 8:-52098658 MsG0880044961.01.T01:intron
GCGAGTTGTTCATTGTTGGT+TGG 0.514307 8:+52098728 None:intergenic
ATGGCTGAGAGCGGTGGAGG+AGG 0.530413 8:+52098660 None:intergenic
CAGCAATCTAATAGTCGAGA+TGG 0.599688 8:-52096559 MsG0880044961.01.T01:three_prime_UTR
TCAACCATGGCTGAGAGCGG+TGG 0.611890 8:+52098654 None:intergenic
AAGTCAACCATGGCTGAGAG+CGG 0.673510 8:+52098651 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTAAGAATTTTAAATT+TGG - Chr8:52096835-52096854 MsG0880044961.01.T01:intron 10.0%
!! ATTAGTTATATATATTACCT+TGG - Chr8:52096863-52096882 MsG0880044961.01.T01:intron 15.0%
!! AATTACCAAACATTATTCTT+TGG + Chr8:52098530-52098549 None:intergenic 20.0%
!! ATATATATTACCTTGGTTAT+CGG - Chr8:52096870-52096889 MsG0880044961.01.T01:intron 20.0%
!! CTTAAAAACCAAACTAATTA+GGG + Chr8:52096824-52096843 None:intergenic 20.0%
!! GTAATTGATTAAAATGCAAT+AGG - Chr8:52098544-52098563 MsG0880044961.01.T01:intron 20.0%
!! TCTTAAAAACCAAACTAATT+AGG + Chr8:52096825-52096844 None:intergenic 20.0%
!! TTACAACAATATGCTTATTA+GGG - Chr8:52096668-52096687 MsG0880044961.01.T01:intron 20.0%
!! TTGCTGCTAATTTATTATTT+GGG - Chr8:52097104-52097123 MsG0880044961.01.T01:intron 20.0%
!! TTTACAACAATATGCTTATT+AGG - Chr8:52096667-52096686 MsG0880044961.01.T01:intron 20.0%
!! TTTGCTGCTAATTTATTATT+TGG - Chr8:52097103-52097122 MsG0880044961.01.T01:intron 20.0%
!!! ATTATTTTCTGTGAATATCA+GGG - Chr8:52098810-52098829 MsG0880044961.01.T01:CDS 20.0%
! AATCATCCATTATCTTAATG+AGG + Chr8:52096009-52096028 None:intergenic 25.0%
! ACATAACAGAATGCAATTAA+AGG + Chr8:52097801-52097820 None:intergenic 25.0%
! AGCATATTGTTGTAAACATA+AGG + Chr8:52096663-52096682 None:intergenic 25.0%
! CAAAACCAAAGAATAATGTT+TGG - Chr8:52098522-52098541 MsG0880044961.01.T01:intron 25.0%
! CAATTCATTTACATTGTTGT+GGG - Chr8:52097923-52097942 MsG0880044961.01.T01:intron 25.0%
! TATCAATCAAAAACATGTCT+GGG + Chr8:52097749-52097768 None:intergenic 25.0%
! TATTATCAACTAGAGTTGTT+AGG - Chr8:52097264-52097283 MsG0880044961.01.T01:intron 25.0%
! TCTTCTTGATGAAAATGATT+TGG - Chr8:52096611-52096630 MsG0880044961.01.T01:intron 25.0%
! TTATCAATCAAAAACATGTC+TGG + Chr8:52097750-52097769 None:intergenic 25.0%
!! CATTATTTTCTGTGAATATC+AGG - Chr8:52098809-52098828 MsG0880044961.01.T01:CDS 25.0%
!! CATTTTATTGTTCAGAGTTA+AGG - Chr8:52098494-52098513 MsG0880044961.01.T01:intron 25.0%
!!! CTAAATTTTGAGAGAGAAAA+TGG - Chr8:52097774-52097793 MsG0880044961.01.T01:intron 25.0%
!!! GACATGTTTTTGATTGATAA+TGG - Chr8:52097750-52097769 MsG0880044961.01.T01:intron 25.0%
AATTCTGTATCAATGCTAAC+TGG - Chr8:52096703-52096722 MsG0880044961.01.T01:intron 30.0%
ACATGGAAAACAGAAATACA+AGG + Chr8:52097574-52097593 None:intergenic 30.0%
ATCAATCAAAAACATGTCTG+GGG + Chr8:52097748-52097767 None:intergenic 30.0%
CAACACAAATAAAGAGAACA+AGG + Chr8:52097663-52097682 None:intergenic 30.0%
CCAATTCATTTACATTGTTG+TGG - Chr8:52097922-52097941 MsG0880044961.01.T01:intron 30.0%
CCACAACAATGTAAATGAAT+TGG + Chr8:52097925-52097944 None:intergenic 30.0%
CTAATAACTCGTTTATTGGT+TGG + Chr8:52096407-52096426 None:intergenic 30.0%
CTCACTAATAACTCGTTTAT+TGG + Chr8:52096411-52096430 None:intergenic 30.0%
GCATTCTGTTATGTTTATTG+AGG - Chr8:52097807-52097826 MsG0880044961.01.T01:intron 30.0%
TAGTAAGTCCCTAATTAGTT+TGG - Chr8:52096813-52096832 MsG0880044961.01.T01:intron 30.0%
TCTTAATTGGAGTAATAGTG+TGG - Chr8:52098727-52098746 MsG0880044961.01.T01:CDS 30.0%
! CTTGTTCTCTTTATTTGTGT+TGG - Chr8:52097661-52097680 MsG0880044961.01.T01:intron 30.0%
! TAAAATGCAATAGGTTCTGA+TGG - Chr8:52098553-52098572 MsG0880044961.01.T01:intron 30.0%
!! ACTCTAGTTGATAATAACAC+TGG + Chr8:52097260-52097279 None:intergenic 30.0%
!! TTTTCATCAAGAAGAAGCAT+CGG + Chr8:52096606-52096625 None:intergenic 30.0%
AACAGGAAAAGAACTCTGTA+AGG - Chr8:52098302-52098321 MsG0880044961.01.T01:intron 35.0%
AAGGTCTCGAAACAAATTGA+TGG + Chr8:52096644-52096663 None:intergenic 35.0%
ACAAACACAAATTCCTTCGT+TGG + Chr8:52098654-52098673 None:intergenic 35.0%
ACAAGTAGTTATTAAGGAGG+TGG - Chr8:52096257-52096276 MsG0880044961.01.T01:intron 35.0%
ATACTCATTGTCGATGAATC+GGG + Chr8:52096925-52096944 None:intergenic 35.0%
ATAGAGACAATTGTTGTGGA+AGG + Chr8:52097209-52097228 None:intergenic 35.0%
ATAGTTCCTTTGATCCAGAT+TGG - Chr8:52096547-52096566 MsG0880044961.01.T01:three_prime_UTR 35.0%
ATGTTTATTGAGGCGTAAAG+TGG - Chr8:52097817-52097836 MsG0880044961.01.T01:intron 35.0%
CAGCGAACAAGTAGTTATTA+AGG - Chr8:52096251-52096270 MsG0880044961.01.T01:intron 35.0%
CATACTCATTGTCGATGAAT+CGG + Chr8:52096926-52096945 None:intergenic 35.0%
CATAGACAAAATAACAGCTC+AGG + Chr8:52097627-52097646 None:intergenic 35.0%
CATGTAATGCACTAATGTGT+TGG - Chr8:52098000-52098019 MsG0880044961.01.T01:intron 35.0%
CGAACAAGTAGTTATTAAGG+AGG - Chr8:52096254-52096273 MsG0880044961.01.T01:intron 35.0%
CGATATAGAGACAATTGTTG+TGG + Chr8:52097213-52097232 None:intergenic 35.0%
CTTAATCAAAAGTCGTATCG+AGG - Chr8:52096206-52096225 MsG0880044961.01.T01:intron 35.0%
GATATCTGAAAAGTCAACCA+TGG + Chr8:52096175-52096194 None:intergenic 35.0%
GGATATAGAGACAATTGTTG+TGG + Chr8:52097480-52097499 None:intergenic 35.0%
TAACAAAGAAGATGTCGACA+TGG - Chr8:52096308-52096327 MsG0880044961.01.T01:intron 35.0%
TAGTTCCTTTGATCCAGATT+GGG - Chr8:52096548-52096567 MsG0880044961.01.T01:three_prime_UTR 35.0%
TATACATATGTTAGCCCACA+TGG - Chr8:52098411-52098430 MsG0880044961.01.T01:intron 35.0%
TCGCAACCTCATTAAGATAA+TGG - Chr8:52096000-52096019 MsG0880044961.01.T01:intron 35.0%
TGAAAAGTCTGATGAACAAC+AGG - Chr8:52098285-52098304 MsG0880044961.01.T01:intron 35.0%
TGCTTACAATAGGACTTATG+TGG + Chr8:52097501-52097520 None:intergenic 35.0%
TTGGATAGCTAGGTAAAAGA+GGG - Chr8:52097840-52097859 MsG0880044961.01.T01:intron 35.0%
! AGTTTAGAATATGCACTGTC+TGG - Chr8:52097974-52097993 MsG0880044961.01.T01:intron 35.0%
! TAATGCACTAATGTGTTGGT+AGG - Chr8:52098004-52098023 MsG0880044961.01.T01:intron 35.0%
! TCTGTTTTCCATGTTGAAGA+GGG - Chr8:52097580-52097599 MsG0880044961.01.T01:intron 35.0%
! TTCTGTTTTCCATGTTGAAG+AGG - Chr8:52097579-52097598 MsG0880044961.01.T01:intron 35.0%
!! TGCGACTTTTGATTACTATG+AGG + Chr8:52096045-52096064 None:intergenic 35.0%
!!! CTTCTTCTTTTGAAGTCACA+TGG - Chr8:52098343-52098362 MsG0880044961.01.T01:intron 35.0%
!!! GTTTTTTCAGACACTGGAAA+TGG - Chr8:52098202-52098221 MsG0880044961.01.T01:intron 35.0%
!!! TTGCATGTTTTTTCAGACAC+TGG - Chr8:52098196-52098215 MsG0880044961.01.T01:intron 35.0%
AAGTCGTATCGAGGAACTAA+AGG - Chr8:52096215-52096234 MsG0880044961.01.T01:intron 40.0%
ACTACTTGTTCGCTGTAGAT+TGG + Chr8:52096246-52096265 None:intergenic 40.0%
ATAGCTAGGTAAAAGAGGGT+TGG - Chr8:52097844-52097863 MsG0880044961.01.T01:intron 40.0%
ATCAACCCAATCTGGATCAA+AGG + Chr8:52096556-52096575 None:intergenic 40.0%
ATTAGATTGCTGGCCATTGT+CGG + Chr8:52098246-52098265 None:intergenic 40.0%
CACAGTAAGGAAGGTTATCT+GGG + Chr8:52096581-52096600 None:intergenic 40.0%
CAGCAATCTAATAGTCGAGA+TGG - Chr8:52098254-52098273 MsG0880044961.01.T01:intron 40.0%
CAGCTCTCGTCTATCTTAAT+TGG - Chr8:52098714-52098733 MsG0880044961.01.T01:CDS 40.0%
CATCTCGACTATTAGATTGC+TGG + Chr8:52098256-52098275 None:intergenic 40.0%
CTGTGAATATCAGGGCTAAA+TGG - Chr8:52098818-52098837 MsG0880044961.01.T01:CDS 40.0%
CTTCTGTCCAAACCATTATG+TGG + Chr8:52097079-52097098 None:intergenic 40.0%
GAGATGTTAGAGCCAAATGA+AGG - Chr8:52098621-52098640 MsG0880044961.01.T01:intron 40.0%
GATACTATGACATGCTGGAT+GGG - Chr8:52097686-52097705 MsG0880044961.01.T01:intron 40.0%
GCTTATTAGGGACGCTATTT+CGG - Chr8:52096680-52096699 MsG0880044961.01.T01:intron 40.0%
GGATCAAAGGAACTATGTTC+CGG + Chr8:52096543-52096562 None:intergenic 40.0%
GTTGGATAGCTAGGTAAAAG+AGG - Chr8:52097839-52097858 MsG0880044961.01.T01:intron 40.0%
TCACAGTAAGGAAGGTTATC+TGG + Chr8:52096582-52096601 None:intergenic 40.0%
TCTGTATCAATGCTAACTGG+TGG - Chr8:52096706-52096725 MsG0880044961.01.T01:intron 40.0%
TGATACTATGACATGCTGGA+TGG - Chr8:52097685-52097704 MsG0880044961.01.T01:intron 40.0%
TTAGAGCCAAATGAAGGAGA+TGG - Chr8:52098627-52098646 MsG0880044961.01.T01:intron 40.0%
TTATCGGTACTGTTATGTGC+TGG - Chr8:52096886-52096905 MsG0880044961.01.T01:intron 40.0%
TTATTGAGGCGTAAAGTGGT+TGG - Chr8:52097821-52097840 MsG0880044961.01.T01:intron 40.0%
TTCTGTCCAAACCCATTATG+TGG + Chr8:52097344-52097363 None:intergenic 40.0%
! ACACTGGCTATGCTTACAAT+AGG + Chr8:52097244-52097263 None:intergenic 40.0%
! CATATGGATTGAGTGATGTG+AGG + Chr8:52097044-52097063 None:intergenic 40.0%
! CATCGATACGCCTATTGATT+CGG + Chr8:52096370-52096389 None:intergenic 40.0%
! CGTATCGATGAACTAAAGGA+AGG - Chr8:52096380-52096399 MsG0880044961.01.T01:intron 40.0%
! GTCCTCAAAGAGGTTTTCTA+CGG + Chr8:52097450-52097469 None:intergenic 40.0%
! TAGGCGTATCGATGAACTAA+AGG - Chr8:52096376-52096395 MsG0880044961.01.T01:intron 40.0%
! TCTTTTGTTCGTCTTCTCGA+AGG - Chr8:52096450-52096469 MsG0880044961.01.T01:intron 40.0%
! TGGTTGATACTATGACATGC+TGG - Chr8:52097681-52097700 MsG0880044961.01.T01:intron 40.0%
!! AGCTGTTTTGAGTGCAAAGT+TGG + Chr8:52098699-52098718 None:intergenic 40.0%
!! CATAACAGTACCGATAACCA+AGG + Chr8:52096883-52096902 None:intergenic 40.0%
!! CCTATTGATTCGGACTATTG+CGG + Chr8:52096360-52096379 None:intergenic 40.0%
!! GCTGTTTTGAGTGCAAAGTT+GGG + Chr8:52098698-52098717 None:intergenic 40.0%
!! GCTTGTTAGCTAGTCTTACA+AGG - Chr8:52098442-52098461 MsG0880044961.01.T01:intron 40.0%
!!! GTTGGTAGGTGTCATTGTTT+TGG - Chr8:52098018-52098037 MsG0880044961.01.T01:intron 40.0%
AACAAGCACATGCATCCATG+TGG + Chr8:52098429-52098448 None:intergenic 45.0%
ACAAGCACATGCATCCATGT+GGG + Chr8:52098428-52098447 None:intergenic 45.0%
ACTATGTTCCGGTGAAGCAA+AGG + Chr8:52096532-52096551 None:intergenic 45.0%
CCGCAATAGTCCGAATCAAT+AGG - Chr8:52096357-52096376 MsG0880044961.01.T01:intron 45.0%
CGTAAAGTGGTTGGATAGCT+AGG - Chr8:52097830-52097849 MsG0880044961.01.T01:intron 45.0%
CGTCCTCAAAGAGGTTTCTA+CGG + Chr8:52097184-52097203 None:intergenic 45.0%
CTCCGTAGAAAACCTCTTTG+AGG - Chr8:52097445-52097464 MsG0880044961.01.T01:intron 45.0%
CTTGCTTTCCTTTGCTTCAC+CGG - Chr8:52096521-52096540 MsG0880044961.01.T01:three_prime_UTR 45.0%
GAAAAACTCTCTGCCGACAA+TGG - Chr8:52098230-52098249 MsG0880044961.01.T01:intron 45.0%
GAGTGATGTGAGGAAAGAGT+GGG + Chr8:52097034-52097053 None:intergenic 45.0%
GCGAGTTGTTCATTGTTGGT+TGG + Chr8:52096088-52096107 None:intergenic 45.0%
GCGCGAGTAAACTGGAATTT+AGG + Chr8:52096338-52096357 None:intergenic 45.0%
GTCCAAACCATTATGTGGCA+GGG + Chr8:52097074-52097093 None:intergenic 45.0%
GTTGGACCATCTCCTTCATT+TGG + Chr8:52098636-52098655 None:intergenic 45.0%
TCCAAACCCATTATGTGGCA+GGG + Chr8:52097339-52097358 None:intergenic 45.0%
TCTCCGTAGAAACCTCTTTG+AGG - Chr8:52097178-52097197 MsG0880044961.01.T01:intron 45.0%
TCTGGGTTATCAACCCAATC+TGG + Chr8:52096564-52096583 None:intergenic 45.0%
TGAGTGATGTGAGGAAAGAG+TGG + Chr8:52097035-52097054 None:intergenic 45.0%
TGGAAGAAATCTTGTGTCCG+TGG - Chr8:52098038-52098057 MsG0880044961.01.T01:intron 45.0%
TGTCCAAACCATTATGTGGC+AGG + Chr8:52097075-52097094 None:intergenic 45.0%
! GTTATGTGCTGGTGTGTGTT+AGG - Chr8:52096897-52096916 MsG0880044961.01.T01:intron 45.0%
! TAGGTTCTGATGGAGCATGA+TGG - Chr8:52098563-52098582 MsG0880044961.01.T01:intron 45.0%
! TCTCCTTTGTGGCCCTATTT+TGG - Chr8:52097134-52097153 MsG0880044961.01.T01:intron 45.0%
!! AGAAGCATCGGATCACAGTA+AGG + Chr8:52096594-52096613 None:intergenic 45.0%
!! AGACAGGCATTGGCCAAAAT+AGG + Chr8:52097150-52097169 None:intergenic 45.0%
!! GACAGGCATTGGCCAAAATA+GGG + Chr8:52097149-52097168 None:intergenic 45.0%
!! GTACAAAAGTGTCCTAGCCA+CGG + Chr8:52098058-52098077 None:intergenic 45.0%
!!! CTGGGGACGATTTTGATTCA+TGG + Chr8:52097731-52097750 None:intergenic 45.0%
!!! GGGACGATTTTGATTCATGG+AGG + Chr8:52097728-52097747 None:intergenic 45.0%
!!! TATTTTGGCCAATGCCTGTC+TGG - Chr8:52097149-52097168 MsG0880044961.01.T01:intron 45.0%
AAACCATTATGTGGCAGGGC+AGG + Chr8:52097070-52097089 None:intergenic 50.0%
AACCATTATGTGGCAGGGCA+GGG + Chr8:52097069-52097088 None:intergenic 50.0%
AAGTCAACCATGGCTGAGAG+CGG + Chr8:52096165-52096184 None:intergenic 50.0%
ACAGAGCAAAGCTCCTACAG+TGG - Chr8:52096996-52097015 MsG0880044961.01.T01:intron 50.0%
ACTGTAGGAGCTTTGCTCTG+TGG + Chr8:52096997-52097016 None:intergenic 50.0%
AGATGCTGATGCTGTGATGC+TGG - Chr8:52098589-52098608 MsG0880044961.01.T01:intron 50.0%
AGGGCCACAAAGGAGAATCT+GGG + Chr8:52097130-52097149 None:intergenic 50.0%
ATGTGAGGAAAGAGTGGGAG+GGG + Chr8:52097029-52097048 None:intergenic 50.0%
CAGTGACGTACGTCTCGTTA+AGG - Chr8:52096488-52096507 MsG0880044961.01.T01:intron 50.0%
CTGTAGGAGCTTTGCTCTGT+GGG + Chr8:52096996-52097015 None:intergenic 50.0%
GAAATCTTGTGTCCGTGGCT+AGG - Chr8:52098043-52098062 MsG0880044961.01.T01:intron 50.0%
GACGATATCCAGACAGGCAT+TGG + Chr8:52097160-52097179 None:intergenic 50.0%
GACGTACGTCACTGAAATCG+TGG + Chr8:52096482-52096501 None:intergenic 50.0%
GATGTGAGGAAAGAGTGGGA+GGG + Chr8:52097030-52097049 None:intergenic 50.0%
GCATCGGATCACAGTAAGGA+AGG + Chr8:52096590-52096609 None:intergenic 50.0%
GCGAGCGAGTTGTTCATTGT+TGG + Chr8:52096092-52096111 None:intergenic 50.0%
GCTGCAATCCCTCTTCAACA+TGG + Chr8:52097591-52097610 None:intergenic 50.0%
GTCCAAACCCATTATGTGGC+AGG + Chr8:52097340-52097359 None:intergenic 50.0%
TACGGAGACGATATCCAGAC+AGG + Chr8:52097166-52097185 None:intergenic 50.0%
TAGGGCCACAAAGGAGAATC+TGG + Chr8:52097131-52097150 None:intergenic 50.0%
TGAAGGAGATGGTCCAACGA+AGG - Chr8:52098638-52098657 MsG0880044961.01.T01:intron 50.0%
TGATGTGAGGAAAGAGTGGG+AGG + Chr8:52097031-52097050 None:intergenic 50.0%
TGCCCTGCCACATAATGGTT+TGG - Chr8:52097069-52097088 MsG0880044961.01.T01:intron 50.0%
TGGCCAAAATAGGGCCACAA+AGG + Chr8:52097140-52097159 None:intergenic 50.0%
TGTTCGTCTTCTCGAAGGTC+AGG - Chr8:52096455-52096474 MsG0880044961.01.T01:intron 50.0%
! TGGAAGGTACGTCCTCAAAG+AGG + Chr8:52097193-52097212 None:intergenic 50.0%
AACCCATTATGTGGCAGGGC+AGG + Chr8:52097335-52097354 None:intergenic 55.0%
ACCCATTATGTGGCAGGGCA+GGG + Chr8:52097334-52097353 None:intergenic 55.0%
CTATTGCGGCGCGAGTAAAC+TGG + Chr8:52096346-52096365 None:intergenic 55.0%
GAGCTTTGCTCTGTGGGCAT+CGG + Chr8:52096990-52097009 None:intergenic 55.0%
TCCCTGCCCTGCCACATAAT+GGG - Chr8:52097065-52097084 MsG0880044961.01.T01:intron 55.0%
TGGGCCCAGATTCTCCTTTG+TGG - Chr8:52097123-52097142 MsG0880044961.01.T01:intron 55.0%
!! GCCCTGCCACATAATGGGTT+TGG - Chr8:52097335-52097354 MsG0880044961.01.T01:intron 55.0%
CTCCCTGCCCTGCCACATAA+TGG - Chr8:52097064-52097083 MsG0880044961.01.T01:intron 60.0%
TCAACCATGGCTGAGAGCGG+TGG + Chr8:52096162-52096181 None:intergenic 60.0%
!! GAGGGGTGTCTTGCCACTGT+AGG + Chr8:52097012-52097031 None:intergenic 60.0%
ACCATGGCTGAGAGCGGTGG+AGG + Chr8:52096159-52096178 None:intergenic 65.0%
ATGGCTGAGAGCGGTGGAGG+AGG + Chr8:52096156-52096175 None:intergenic 65.0%
TCCTCCACCGCTCTCAGCCA+TGG - Chr8:52096155-52096174 MsG0880044961.01.T01:intron 65.0%
! GTGGCAGGGCAGGGAGCATA+TGG + Chr8:52097060-52097079 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 52095983 52098852 52095983 ID=MsG0880044961.01;Name=MsG0880044961.01
Chr8 mRNA 52095983 52098852 52095983 ID=MsG0880044961.01.T01;Parent=MsG0880044961.01;Name=MsG0880044961.01.T01;_AED=0.50;_eAED=0.53;_QI=0|0.33|0.25|1|1|1|4|162|64
Chr8 exon 52098659 52098852 52098659 ID=MsG0880044961.01.T01:exon:22255;Parent=MsG0880044961.01.T01
Chr8 exon 52098021 52098054 52098021 ID=MsG0880044961.01.T01:exon:22254;Parent=MsG0880044961.01.T01
Chr8 exon 52096517 52096623 52096517 ID=MsG0880044961.01.T01:exon:22253;Parent=MsG0880044961.01.T01
Chr8 exon 52095983 52096004 52095983 ID=MsG0880044961.01.T01:exon:22252;Parent=MsG0880044961.01.T01
Chr8 CDS 52098659 52098852 52098659 ID=MsG0880044961.01.T01:cds;Parent=MsG0880044961.01.T01
Chr8 CDS 52098054 52098054 52098054 ID=MsG0880044961.01.T01:cds;Parent=MsG0880044961.01.T01
Chr8 three_prime_UTR 52098021 52098053 52098021 ID=MsG0880044961.01.T01:three_prime_utr;Parent=MsG0880044961.01.T01
Chr8 three_prime_UTR 52096517 52096623 52096517 ID=MsG0880044961.01.T01:three_prime_utr;Parent=MsG0880044961.01.T01
Chr8 three_prime_UTR 52095983 52096004 52095983 ID=MsG0880044961.01.T01:three_prime_utr;Parent=MsG0880044961.01.T01
Gene Sequence

>MsG0880044961.01.T01

ATGGATGATTCAACAAATCGCAACCTCATTAAGATAATGGATGATTTAACAAATCGCTACCTCATAGTAATCAAAAGTCGCATCGATGAACTAGAGAGATATCCAACCAACAATGAACAACTCGCTCGCATTGATGAGTTGAAGATTATTCTTGAAATTCTTCTTGCAATCCTCCTCCACCGCTCTCAGCCATGA
Protein sequence

>MsG0880044961.01.T01

MDDSTNRNLIKIMDDLTNRYLIVIKSRIDELERYPTNNEQLARIDELKIILEILLAILLHRSQP*