AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045098.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045098.01.T01 MTR_8g064840 88.340 506 28 1 1 475 1 506 0.0 894
MsG0880045098.01.T01 MTR_8g064810 80.992 484 61 1 1 453 1 484 0.0 786
MsG0880045098.01.T01 MTR_8g064810 34.421 337 187 4 166 470 6 340 3.65e-54 191
MsG0880045098.01.T01 MTR_3g109120 40.449 267 158 1 193 459 67 332 3.98e-67 220
MsG0880045098.01.T01 MTR_3g109120 30.091 329 194 6 9 304 13 338 4.67e-47 167
MsG0880045098.01.T01 MTR_3g109120 39.286 140 84 1 320 459 34 172 2.97e-28 116
MsG0880045098.01.T01 MTR_3g114530 40.299 268 146 5 193 446 89 356 3.47e-64 214
MsG0880045098.01.T01 MTR_3g114530 36.392 316 155 4 15 284 40 355 9.92e-61 205
MsG0880045098.01.T01 MTR_3g114530 44.586 157 74 4 12 156 201 356 1.08e-33 132
MsG0880045098.01.T01 MTR_3g114530 41.401 157 87 3 304 456 40 195 1.12e-33 132
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045098.01.T01 AT1G60420 59.368 475 161 2 9 452 13 486 0.0 585
MsG0880045098.01.T01 AT1G60420 36.228 334 179 4 170 471 14 345 1.19e-57 200
MsG0880045098.01.T01 AT1G60420 43.293 164 89 3 298 459 13 174 2.67e-36 141
MsG0880045098.01.T01 AT4G31240 39.552 268 161 1 192 459 67 333 2.58e-64 213
MsG0880045098.01.T01 AT4G31240 31.013 316 183 5 11 293 16 329 1.25e-50 177
MsG0880045098.01.T01 AT4G31240 38.312 154 93 2 298 451 14 165 3.85e-28 115
MsG0880045098.01.T01 AT4G31240 39.552 268 161 1 192 459 67 333 2.58e-64 213
MsG0880045098.01.T01 AT4G31240 31.013 316 183 5 11 293 16 329 1.25e-50 177
MsG0880045098.01.T01 AT4G31240 38.312 154 93 2 298 451 14 165 3.85e-28 115

Find 130 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACATGAAACAATTCTTTA+AGG 0.135448 8:-54181543 None:intergenic
CGAGATCTGGTTGGGCTCTA+TGG 0.142538 8:+54182818 MsG0880045098.01.T01:CDS
CTCCCCTCCTTCGTTGTTAT+TGG 0.216122 8:+54182169 MsG0880045098.01.T01:CDS
GAAATCTGCATGTTATATTT+TGG 0.238323 8:+54182963 MsG0880045098.01.T01:exon
ATCACAAACCCATCCATCTT+TGG 0.250320 8:-54182918 None:intergenic
AAATATAACATGCAGATTTC+AGG 0.255684 8:-54182960 None:intergenic
GATTCCGGTGTCAGAATTAA+AGG 0.269414 8:+54182496 MsG0880045098.01.T01:intron
GTTCACATTATCCGTGAATA+TGG 0.278551 8:+54181625 MsG0880045098.01.T01:CDS
TGACTCTTCCTCATCATCTA+AGG 0.282702 8:-54182053 None:intergenic
TGTCTTGTGTCTTGATCTTA+AGG 0.293186 8:-54182598 None:intergenic
CTTGGAAAAGTAGTTGTTAA+AGG 0.300775 8:-54181473 None:intergenic
CTTGCATTAATCGATGAAAC+TGG 0.313991 8:+54181580 MsG0880045098.01.T01:CDS
TCCCCTCCTTCGTTGTTATT+GGG 0.319196 8:+54182170 MsG0880045098.01.T01:CDS
AAACTTGTTTGAAACTAGTT+AGG 0.330734 8:+54182128 MsG0880045098.01.T01:CDS
CTCCTTTGATGAATTCTTTG+CGG 0.339201 8:+54182667 MsG0880045098.01.T01:CDS
AAAGAATTGTTTCATGTAAA+CGG 0.340648 8:+54181547 MsG0880045098.01.T01:CDS
AGTCGTAAATTCAAGGTATC+TGG 0.347450 8:+54182740 MsG0880045098.01.T01:CDS
TCAAACACTTGAGTCAGTTT+TGG 0.355313 8:+54182318 MsG0880045098.01.T01:CDS
ACAGAATCTGCCATCGCTAT+TGG 0.355728 8:-54180642 None:intergenic
CTCTCCCAAGGGTGACTTTG+AGG 0.370317 8:+54181417 MsG0880045098.01.T01:CDS
CCAGTCCTTGAGATCGATAT+TGG 0.378969 8:+54181720 MsG0880045098.01.T01:CDS
CCATGGCTGGCACTTCCCTT+TGG 0.383022 8:+54182695 MsG0880045098.01.T01:CDS
AACATGCAGATTTCAGGCTT+TGG 0.384409 8:-54182954 None:intergenic
AGGTACGCATCAATGAGTTT+TGG 0.388369 8:-54182578 None:intergenic
TTTGGGCTTCTCTCCTTCCT+TGG 0.391386 8:-54182900 None:intergenic
TCACAAACCCATCCATCTTT+GGG 0.399851 8:-54182917 None:intergenic
TCTTCGAAACACCGGCGATC+AGG 0.402540 8:+54180722 MsG0880045098.01.T01:CDS
CACGAAAGAGGCTCGAGATC+TGG 0.405594 8:+54182805 MsG0880045098.01.T01:CDS
GAGATCTGGTTGGGCTCTAT+GGG 0.414235 8:+54182819 MsG0880045098.01.T01:CDS
GGTCCGATCGCCACAAGCTT+GGG 0.414337 8:-54182767 None:intergenic
TCAATGGCATCAGCGGCATT+AGG 0.420216 8:-54182214 None:intergenic
TTCGTTGTTATTGGGCCAGA+TGG 0.439861 8:+54182178 MsG0880045098.01.T01:CDS
GGGAAAGTTGTTACTGAAGA+TGG 0.440804 8:+54181601 MsG0880045098.01.T01:CDS
TCCTCTACTTCTCAGCCCAC+TGG 0.456326 8:+54182531 MsG0880045098.01.T01:CDS
GATACCCTTTCACATTAGAA+AGG 0.462202 8:+54181656 MsG0880045098.01.T01:CDS
ATTCCGGTGTCAGAATTAAA+GGG 0.462516 8:+54182497 MsG0880045098.01.T01:CDS
TGGTCCGATCGCCACAAGCT+TGG 0.462521 8:-54182768 None:intergenic
TTAGCTTACTTCATTTCTAT+CGG 0.465037 8:-54181773 None:intergenic
TTGGTTATCCTTGCCTCTCA+AGG 0.468978 8:+54182102 MsG0880045098.01.T01:CDS
AAACTAACATCACAATCATA+TGG 0.474542 8:-54183002 None:intergenic
GAGCCTCTTTCGTGACAGTC+AGG 0.476275 8:-54182796 None:intergenic
ATTATCCGTGAATATGGAAC+TGG 0.477075 8:+54181631 MsG0880045098.01.T01:CDS
AAGTGTTTGAGATGCCTCCT+TGG 0.478467 8:-54182305 None:intergenic
TGGTCTTCATCTCTAGTGAC+AGG 0.485675 8:+54182636 MsG0880045098.01.T01:CDS
CCGATCATTCACTCCAACAT+TGG 0.486650 8:+54181375 MsG0880045098.01.T01:CDS
GGAGAGAATAAAAGAAATAG+AGG 0.489082 8:+54182865 MsG0880045098.01.T01:CDS
TGAACCCTTTCTAATGTGAA+AGG 0.489248 8:-54181661 None:intergenic
AAGAGGCTCGAGATCTGGTT+GGG 0.493773 8:+54182810 MsG0880045098.01.T01:CDS
AACAACCTCAAAGTCACCCT+TGG 0.495759 8:-54181422 None:intergenic
ATTTCTAAGTCGTAAATTCA+AGG 0.495892 8:+54182733 MsG0880045098.01.T01:CDS
CGAAGAAGAAAGTCTCTATC+GGG 0.499270 8:-54180705 None:intergenic
GAACCCTTTCTAATGTGAAA+GGG 0.499789 8:-54181660 None:intergenic
CTTTGCGGAAATGCCATGGC+TGG 0.502358 8:+54182682 MsG0880045098.01.T01:CDS
AGGAATTAGAAAGCGTGCCT+TGG 0.503159 8:+54182083 MsG0880045098.01.T01:CDS
AGAGTTGAAAGATATAGAAG+AGG 0.503305 8:+54181684 MsG0880045098.01.T01:CDS
GCTGATGCCATTGAGGATCA+TGG 0.504159 8:+54182223 MsG0880045098.01.T01:CDS
GATAGCCAGCCATGGCATCT+TGG 0.504355 8:-54181491 None:intergenic
TTCGTGACAGTCAGGCCACT+TGG 0.508645 8:-54182788 None:intergenic
ATCCTCCAGTTCCATATTCA+CGG 0.515188 8:-54181636 None:intergenic
TCGAAGAAGAAAGTCTCTAT+CGG 0.521912 8:-54180706 None:intergenic
ATTCCCAAGCTTGTGGCGAT+CGG 0.529129 8:+54182764 MsG0880045098.01.T01:CDS
ACCAGTGGGCTGAGAAGTAG+AGG 0.529711 8:-54182532 None:intergenic
ATACCCTTTCACATTAGAAA+GGG 0.530953 8:+54181657 MsG0880045098.01.T01:CDS
TTTATTCTCTCCTCAGTGAA+AGG 0.534022 8:-54182854 None:intergenic
GACTTTCTTCTTCGAAACAC+CGG 0.534369 8:+54180714 MsG0880045098.01.T01:CDS
AGTCTCTCTGAATCAGAAAG+TGG 0.535501 8:-54181514 None:intergenic
AGCTTGAAGGGAAAGAAACT+AGG 0.537057 8:+54181319 MsG0880045098.01.T01:CDS
GAGAGAAGCCCAAAGATGGA+TGG 0.538351 8:+54182909 MsG0880045098.01.T01:CDS
GTCTATCCCATGATCCTCAA+TGG 0.543337 8:-54182230 None:intergenic
GGAAAATGGGGAGAACTTTG+AGG 0.545659 8:+54182018 MsG0880045098.01.T01:CDS
GGCCCAATAACAACGAAGGA+GGG 0.547821 8:-54182172 None:intergenic
AAAGAGGCTCGAGATCTGGT+TGG 0.548388 8:+54182809 MsG0880045098.01.T01:CDS
CTTTCTGATTCAGAGAGACT+CGG 0.550345 8:+54181517 MsG0880045098.01.T01:CDS
GAAGGAGAGAAGCCCAAAGA+TGG 0.550367 8:+54182905 MsG0880045098.01.T01:CDS
CTGATGCCATTGAGGATCAT+GGG 0.553965 8:+54182224 MsG0880045098.01.T01:CDS
TGGCCTGACTGTCACGAAAG+AGG 0.559786 8:+54182793 MsG0880045098.01.T01:CDS
ACAACCTCAAAGTCACCCTT+GGG 0.560092 8:-54181421 None:intergenic
TCGTTGTTATTGGGCCAGAT+GGG 0.561804 8:+54182179 MsG0880045098.01.T01:CDS
AGACAATGATGCGCTTGAAG+TGG 0.563569 8:+54182616 MsG0880045098.01.T01:CDS
ATATAGAAGAGGAAGCTAAG+AGG 0.564358 8:+54181695 MsG0880045098.01.T01:CDS
ATCATTCACTCCAACATTGG+TGG 0.565386 8:+54181378 MsG0880045098.01.T01:CDS
TAATGCCGCTGATGCCATTG+AGG 0.573168 8:+54182216 MsG0880045098.01.T01:CDS
TTGTACACCTCCACCAATGT+TGG 0.574322 8:-54181388 None:intergenic
CCAATGTTGGAGTGAATGAT+CGG 0.574969 8:-54181375 None:intergenic
GACTCTTCCTCATCATCTAA+GGG 0.575321 8:-54182052 None:intergenic
GTACAATGAACTCTCTCCCA+AGG 0.579038 8:+54181405 MsG0880045098.01.T01:CDS
CCAATATCGATCTCAAGGAC+TGG 0.581021 8:-54181720 None:intergenic
AGAGAAGCCCAAAGATGGAT+GGG 0.583984 8:+54182910 MsG0880045098.01.T01:CDS
GCCCAATAACAACGAAGGAG+GGG 0.585041 8:-54182171 None:intergenic
TTCCGCAAAGAATTCATCAA+AGG 0.585272 8:-54182669 None:intergenic
TTCCCCTTTAATTCTGACAC+CGG 0.586881 8:-54182500 None:intergenic
GTTTATACCCTTAGATGATG+AGG 0.588642 8:+54182045 MsG0880045098.01.T01:CDS
ATCTGGCATTCCCAAGCTTG+TGG 0.593565 8:+54182757 MsG0880045098.01.T01:CDS
TTTGGAAGAAACTCACGGCA+TGG 0.593881 8:-54182560 None:intergenic
TCATCGATTAATGCAAGATG+AGG 0.595560 8:-54181574 None:intergenic
ATGATCCTCAATGGCATCAG+CGG 0.595653 8:-54182221 None:intergenic
AGAGACCAATATCGATCTCA+AGG 0.596132 8:-54181725 None:intergenic
CGATGAAATAGCAAAGGCCA+AGG 0.596494 8:+54182288 MsG0880045098.01.T01:CDS
GGATGATATCACAAAGTCAC+GGG 0.601687 8:-54181752 None:intergenic
ATCCGTGAATATGGAACTGG+AGG 0.602853 8:+54181634 MsG0880045098.01.T01:CDS
CGGATGATATCACAAAGTCA+CGG 0.603753 8:-54181753 None:intergenic
AAAGATGGATGGGTTTGTGA+TGG 0.605439 8:+54182920 MsG0880045098.01.T01:CDS
GTCTCTCTGAATCAGAAAGT+GGG 0.605900 8:-54181513 None:intergenic
CACTCACTCACCAATAGCGA+TGG 0.608093 8:+54180632 MsG0880045098.01.T01:exon
TGAGGAAGAGTCATTCAAGA+AGG 0.612234 8:+54182063 MsG0880045098.01.T01:CDS
AATTCTTTGCGGAAATGCCA+TGG 0.613584 8:+54182678 MsG0880045098.01.T01:CDS
TTGCATTAATCGATGAAACT+GGG 0.614649 8:+54181581 MsG0880045098.01.T01:CDS
ATTCACTCCAACATTGGTGG+AGG 0.615048 8:+54181381 MsG0880045098.01.T01:CDS
TGACTAAACAAGAATAACGT+AGG 0.615275 8:-54180607 None:intergenic
CACGGCATGGAGGACACCAG+TGG 0.616281 8:-54182547 None:intergenic
AGTCTCTATCGGGAGAAGAG+AGG 0.619260 8:-54180695 None:intergenic
CCAAAGGGAAGTGCCAGCCA+TGG 0.621888 8:-54182695 None:intergenic
TGGCCCAATAACAACGAAGG+AGG 0.624367 8:-54182173 None:intergenic
TACAATGAACTCTCTCCCAA+GGG 0.628684 8:+54181406 MsG0880045098.01.T01:CDS
ACGGCATGGAGGACACCAGT+GGG 0.635887 8:-54182546 None:intergenic
ATCTGGCCCAATAACAACGA+AGG 0.643673 8:-54182176 None:intergenic
TTCCGGTGTCAGAATTAAAG+GGG 0.646538 8:+54182498 MsG0880045098.01.T01:CDS
TGAACTCGATGAAATAGCAA+AGG 0.647912 8:+54182282 MsG0880045098.01.T01:CDS
AGTGGGCTGAGAAGTAGAGG+AGG 0.655615 8:-54182529 None:intergenic
GAAAGTGGGATAGCCAGCCA+TGG 0.663948 8:-54181499 None:intergenic
CTTGTGGCGATCGGACCAAG+TGG 0.664406 8:+54182773 MsG0880045098.01.T01:CDS
CATTGAGAAAGATGGGACGA+AGG 0.672081 8:+54182363 MsG0880045098.01.T01:CDS
AGATCTGGTTGGGCTCTATG+GGG 0.677010 8:+54182820 MsG0880045098.01.T01:CDS
GTTGGAGTGAATGATCGGCA+CGG 0.684101 8:-54181370 None:intergenic
TGAAATAGCAAAGGCCAAGG+AGG 0.686521 8:+54182291 MsG0880045098.01.T01:CDS
GGTCTTCATCTCTAGTGACA+GGG 0.686873 8:+54182637 MsG0880045098.01.T01:CDS
TTGAGAGGCAAGGATAACCA+AGG 0.706344 8:-54182100 None:intergenic
GGAAGAAACTCACGGCATGG+AGG 0.726391 8:-54182557 None:intergenic
ACGTAGGACTAGCAGAACAG+AGG 0.730360 8:-54180591 None:intergenic
AGATGCTTATCCTTTCACTG+AGG 0.785205 8:+54182844 MsG0880045098.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATAAATATAGATGTAC+TGG + Chr8:54182399-54182418 MsG0880045098.01.T01:intron 15.0%
!! TTAATAACGAATTAAAAAGA+GGG - Chr8:54182451-54182470 None:intergenic 15.0%
!! TTAATTCAATATGATATAGT+AGG + Chr8:54181800-54181819 MsG0880045098.01.T01:intron 15.0%
!! AAAGAATTGTTTCATGTAAA+CGG + Chr8:54181547-54181566 MsG0880045098.01.T01:CDS 20.0%
!! AAATTAAAACCTATGAAACA+CGG - Chr8:54181039-54181058 None:intergenic 20.0%
!! AACAAACAGATAATAACTAA+AGG - Chr8:54181828-54181847 None:intergenic 20.0%
!! GTTAATAACGAATTAAAAAG+AGG - Chr8:54182452-54182471 None:intergenic 20.0%
!! TTACATGAAACAATTCTTTA+AGG - Chr8:54181546-54181565 None:intergenic 20.0%
!!! GTTTTTGTTATTGTATATTG+TGG + Chr8:54181204-54181223 MsG0880045098.01.T01:intron 20.0%
!!! TATGTATCTGAATTGTTTTA+TGG - Chr8:54180513-54180532 None:intergenic 20.0%
!!! TTAATTATGTGATTTTCTCA+CGG + Chr8:54180984-54181003 MsG0880045098.01.T01:intron 20.0%
!!! TTTAATCCCTTTATTTTATG+TGG + Chr8:54180802-54180821 MsG0880045098.01.T01:intron 20.0%
! AAACTAACATCACAATCATA+TGG - Chr8:54183005-54183024 None:intergenic 25.0%
! AAATATAACATGCAGATTTC+AGG - Chr8:54182963-54182982 None:intergenic 25.0%
! ACTTCTTCCACATAAAATAA+AGG - Chr8:54180812-54180831 None:intergenic 25.0%
! ATTTAATGAAAAGCTTAAGG+AGG + Chr8:54181979-54181998 MsG0880045098.01.T01:intron 25.0%
! ATTTCTAAGTCGTAAATTCA+AGG + Chr8:54182733-54182752 MsG0880045098.01.T01:CDS 25.0%
! CTTCTTCCACATAAAATAAA+GGG - Chr8:54180811-54180830 None:intergenic 25.0%
! GCTATTTAATGAAAAGCTTA+AGG + Chr8:54181976-54181995 MsG0880045098.01.T01:intron 25.0%
! TTAATACCGATGAAATATTG+TGG + Chr8:54181255-54181274 MsG0880045098.01.T01:intron 25.0%
! TTAGCTTACTTCATTTCTAT+CGG - Chr8:54181776-54181795 None:intergenic 25.0%
!! AAACTTGTTTGAAACTAGTT+AGG + Chr8:54182128-54182147 MsG0880045098.01.T01:CDS 25.0%
!! ATTTTGTCATTGAGAAAGAT+GGG + Chr8:54182356-54182375 MsG0880045098.01.T01:CDS 25.0%
!! GAAATCTGCATGTTATATTT+TGG + Chr8:54182963-54182982 MsG0880045098.01.T01:exon 25.0%
!! GTAAAAATTGATAGCTTGAA+GGG + Chr8:54181307-54181326 MsG0880045098.01.T01:CDS 25.0%
!!! GTTTTTATTTTTCAGCATCA+TGG + Chr8:54181341-54181360 MsG0880045098.01.T01:CDS 25.0%
!!! TGTCATTTTTTCAATGATGT+CGG + Chr8:54180894-54180913 MsG0880045098.01.T01:intron 25.0%
!!! TGTTATATTTTGGTGATTAC+TGG + Chr8:54182973-54182992 MsG0880045098.01.T01:three_prime_UTR 25.0%
AATTAAAAAGAGGGAGTGAT+GGG - Chr8:54182442-54182461 None:intergenic 30.0%
ACAAAAAGCTGAAGGAAAAT+GGG + Chr8:54182005-54182024 MsG0880045098.01.T01:CDS 30.0%
AGAGTTGAAAGATATAGAAG+AGG + Chr8:54181684-54181703 MsG0880045098.01.T01:CDS 30.0%
ATACCCTTTCACATTAGAAA+GGG + Chr8:54181657-54181676 MsG0880045098.01.T01:CDS 30.0%
ATAGCACCACAATATTTCAT+CGG - Chr8:54181264-54181283 None:intergenic 30.0%
CTTATGACAATTGTTTGAAG+TGG + Chr8:54181227-54181246 MsG0880045098.01.T01:intron 30.0%
CTTGGAAAAGTAGTTGTTAA+AGG - Chr8:54181476-54181495 None:intergenic 30.0%
GGAGAGAATAAAAGAAATAG+AGG + Chr8:54182865-54182884 MsG0880045098.01.T01:CDS 30.0%
TACAAAAAGCTGAAGGAAAA+TGG + Chr8:54182004-54182023 MsG0880045098.01.T01:CDS 30.0%
TGACTAAACAAGAATAACGT+AGG - Chr8:54180610-54180629 None:intergenic 30.0%
TTGCATTAATCGATGAAACT+GGG + Chr8:54181581-54181600 MsG0880045098.01.T01:CDS 30.0%
! GAAAACTTTTCAGTAGTGAA+TGG - Chr8:54182262-54182281 None:intergenic 30.0%
! GATTTTGTCATTGAGAAAGA+TGG + Chr8:54182355-54182374 MsG0880045098.01.T01:CDS 30.0%
! GGTAAAAATTGATAGCTTGA+AGG + Chr8:54181306-54181325 MsG0880045098.01.T01:intron 30.0%
!! ATTTTGGTGATTACTGGTTA+TGG + Chr8:54182979-54182998 MsG0880045098.01.T01:three_prime_UTR 30.0%
!!! TCTCATATTTTGAAACTCAC+AGG + Chr8:54181285-54181304 MsG0880045098.01.T01:intron 30.0%
ATATAGAAGAGGAAGCTAAG+AGG + Chr8:54181695-54181714 MsG0880045098.01.T01:CDS 35.0%
ATTAAAAAGAGGGAGTGATG+GGG - Chr8:54182441-54182460 None:intergenic 35.0%
ATTATCCGTGAATATGGAAC+TGG + Chr8:54181631-54181650 MsG0880045098.01.T01:CDS 35.0%
CAAAAAGCTGAAGGAAAATG+GGG + Chr8:54182006-54182025 MsG0880045098.01.T01:CDS 35.0%
CATCAAAGGAAAAGTCAGAT+TGG - Chr8:54181876-54181895 None:intergenic 35.0%
CTCCTTTGATGAATTCTTTG+CGG + Chr8:54182667-54182686 MsG0880045098.01.T01:CDS 35.0%
CTTGCATTAATCGATGAAAC+TGG + Chr8:54181580-54181599 MsG0880045098.01.T01:CDS 35.0%
GAACCCTTTCTAATGTGAAA+GGG - Chr8:54181663-54181682 None:intergenic 35.0%
GAATTAAAAAGAGGGAGTGA+TGG - Chr8:54182443-54182462 None:intergenic 35.0%
GATACCCTTTCACATTAGAA+AGG + Chr8:54181656-54181675 MsG0880045098.01.T01:CDS 35.0%
GTGTAATTACACGTTATCTG+AGG - Chr8:54180867-54180886 None:intergenic 35.0%
GTTCACATTATCCGTGAATA+TGG + Chr8:54181625-54181644 MsG0880045098.01.T01:CDS 35.0%
GTTTATACCCTTAGATGATG+AGG + Chr8:54182045-54182064 MsG0880045098.01.T01:CDS 35.0%
TAAATGAACCACATGATCTG+TGG - Chr8:54181853-54181872 None:intergenic 35.0%
TCGAAGAAGAAAGTCTCTAT+CGG - Chr8:54180709-54180728 None:intergenic 35.0%
TGAACCCTTTCTAATGTGAA+AGG - Chr8:54181664-54181683 None:intergenic 35.0%
TGAACTCGATGAAATAGCAA+AGG + Chr8:54182282-54182301 MsG0880045098.01.T01:CDS 35.0%
TGTCTTGTGTCTTGATCTTA+AGG - Chr8:54182601-54182620 None:intergenic 35.0%
TTCCGCAAAGAATTCATCAA+AGG - Chr8:54182672-54182691 None:intergenic 35.0%
TTTATCTCCATTGCAGATTC+CGG + Chr8:54182481-54182500 MsG0880045098.01.T01:intron 35.0%
TTTATTCTCTCCTCAGTGAA+AGG - Chr8:54182857-54182876 None:intergenic 35.0%
! AGTCGTAAATTCAAGGTATC+TGG + Chr8:54182740-54182759 MsG0880045098.01.T01:CDS 35.0%
! ATTCCGGTGTCAGAATTAAA+GGG + Chr8:54182497-54182516 MsG0880045098.01.T01:CDS 35.0%
! GTTTTACTTGAGTTTTCTCG+TGG + Chr8:54181176-54181195 MsG0880045098.01.T01:intron 35.0%
! TAAACTTTTTACCTGATCGC+CGG - Chr8:54180736-54180755 None:intergenic 35.0%
! TCAAACACTTGAGTCAGTTT+TGG + Chr8:54182318-54182337 MsG0880045098.01.T01:CDS 35.0%
! TCATCGATTAATGCAAGATG+AGG - Chr8:54181577-54181596 None:intergenic 35.0%
!! AAACAAGTTTTGTCCTTGAG+AGG - Chr8:54182118-54182137 None:intergenic 35.0%
!! ATACCTATCTCTGAGATTGA+GGG + Chr8:54181906-54181925 MsG0880045098.01.T01:intron 35.0%
!! TATTTTTCAGCATCATGGTG+TGG + Chr8:54181346-54181365 MsG0880045098.01.T01:CDS 35.0%
!!! TGAGTTTTGGAAGAAACTCA+CGG - Chr8:54182568-54182587 None:intergenic 35.0%
AACATGCAGATTTCAGGCTT+TGG - Chr8:54182957-54182976 None:intergenic 40.0%
AATTCTTTGCGGAAATGCCA+TGG + Chr8:54182678-54182697 MsG0880045098.01.T01:CDS 40.0%
AGAGACCAATATCGATCTCA+AGG - Chr8:54181728-54181747 None:intergenic 40.0%
AGATGCTTATCCTTTCACTG+AGG + Chr8:54182844-54182863 MsG0880045098.01.T01:CDS 40.0%
AGCTTGAAGGGAAAGAAACT+AGG + Chr8:54181319-54181338 MsG0880045098.01.T01:CDS 40.0%
AGTCTCTCTGAATCAGAAAG+TGG - Chr8:54181517-54181536 None:intergenic 40.0%
ATCACAAACCCATCCATCTT+TGG - Chr8:54182921-54182940 None:intergenic 40.0%
ATCATTCACTCCAACATTGG+TGG + Chr8:54181378-54181397 MsG0880045098.01.T01:CDS 40.0%
ATCCTCCAGTTCCATATTCA+CGG - Chr8:54181639-54181658 None:intergenic 40.0%
CCAATGTTGGAGTGAATGAT+CGG - Chr8:54181378-54181397 None:intergenic 40.0%
CGAAGAAGAAAGTCTCTATC+GGG - Chr8:54180708-54180727 None:intergenic 40.0%
CGGATGATATCACAAAGTCA+CGG - Chr8:54181756-54181775 None:intergenic 40.0%
CTTTCTGATTCAGAGAGACT+CGG + Chr8:54181517-54181536 MsG0880045098.01.T01:CDS 40.0%
GACTCTTCCTCATCATCTAA+GGG - Chr8:54182055-54182074 None:intergenic 40.0%
GACTTTCTTCTTCGAAACAC+CGG + Chr8:54180714-54180733 MsG0880045098.01.T01:CDS 40.0%
GGAGGTTTACAAAAAGCTGA+AGG + Chr8:54181997-54182016 MsG0880045098.01.T01:intron 40.0%
GGATGATATCACAAAGTCAC+GGG - Chr8:54181755-54181774 None:intergenic 40.0%
GGGAAAGTTGTTACTGAAGA+TGG + Chr8:54181601-54181620 MsG0880045098.01.T01:CDS 40.0%
GTATCTGTTGTGCACATCAA+AGG - Chr8:54181890-54181909 None:intergenic 40.0%
GTCTCTCTGAATCAGAAAGT+GGG - Chr8:54181516-54181535 None:intergenic 40.0%
TACAATGAACTCTCTCCCAA+GGG + Chr8:54181406-54181425 MsG0880045098.01.T01:CDS 40.0%
TCACAAACCCATCCATCTTT+GGG - Chr8:54182920-54182939 None:intergenic 40.0%
TGACTCTTCCTCATCATCTA+AGG - Chr8:54182056-54182075 None:intergenic 40.0%
TGAGGAAGAGTCATTCAAGA+AGG + Chr8:54182063-54182082 MsG0880045098.01.T01:CDS 40.0%
TTCCCCTTTAATTCTGACAC+CGG - Chr8:54182503-54182522 None:intergenic 40.0%
TTTCCCTCAATCTCAGAGAT+AGG - Chr8:54181912-54181931 None:intergenic 40.0%
TTTGTTTGCCACAGATCATG+TGG + Chr8:54181842-54181861 MsG0880045098.01.T01:intron 40.0%
! AAAGATGGATGGGTTTGTGA+TGG + Chr8:54182920-54182939 MsG0880045098.01.T01:CDS 40.0%
! AGGTACGCATCAATGAGTTT+TGG - Chr8:54182581-54182600 None:intergenic 40.0%
! ATGTGATTTTCTCACGGCAT+TGG + Chr8:54180990-54181009 MsG0880045098.01.T01:intron 40.0%
! GATTCCGGTGTCAGAATTAA+AGG + Chr8:54182496-54182515 MsG0880045098.01.T01:intron 40.0%
! TCTTTTCTCGAGTCACCAAA+GGG - Chr8:54182713-54182732 None:intergenic 40.0%
! TTCCGGTGTCAGAATTAAAG+GGG + Chr8:54182498-54182517 MsG0880045098.01.T01:CDS 40.0%
! TTCTTTTCTCGAGTCACCAA+AGG - Chr8:54182714-54182733 None:intergenic 40.0%
!! ACTACTTTTCCAAGATGCCA+TGG + Chr8:54181482-54181501 MsG0880045098.01.T01:CDS 40.0%
!! GATACCTATCTCTGAGATTG+AGG + Chr8:54181905-54181924 MsG0880045098.01.T01:intron 40.0%
AACAACCTCAAAGTCACCCT+TGG - Chr8:54181425-54181444 None:intergenic 45.0%
AACCTATGAAACACGGACAC+CGG - Chr8:54181032-54181051 None:intergenic 45.0%
ACAACCTCAAAGTCACCCTT+GGG - Chr8:54181424-54181443 None:intergenic 45.0%
ACAGAATCTGCCATCGCTAT+TGG - Chr8:54180645-54180664 None:intergenic 45.0%
AGACAATGATGCGCTTGAAG+TGG + Chr8:54182616-54182635 MsG0880045098.01.T01:CDS 45.0%
AGAGAAGCCCAAAGATGGAT+GGG + Chr8:54182910-54182929 MsG0880045098.01.T01:CDS 45.0%
ATCCGTGAATATGGAACTGG+AGG + Chr8:54181634-54181653 MsG0880045098.01.T01:CDS 45.0%
ATCTGGCCCAATAACAACGA+AGG - Chr8:54182179-54182198 None:intergenic 45.0%
ATGATCCTCAATGGCATCAG+CGG - Chr8:54182224-54182243 None:intergenic 45.0%
ATTCACTCCAACATTGGTGG+AGG + Chr8:54181381-54181400 MsG0880045098.01.T01:CDS 45.0%
CATTGAGAAAGATGGGACGA+AGG + Chr8:54182363-54182382 MsG0880045098.01.T01:CDS 45.0%
CCAATATCGATCTCAAGGAC+TGG - Chr8:54181723-54181742 None:intergenic 45.0%
CCAGTCCTTGAGATCGATAT+TGG + Chr8:54181720-54181739 MsG0880045098.01.T01:CDS 45.0%
CCGATCATTCACTCCAACAT+TGG + Chr8:54181375-54181394 MsG0880045098.01.T01:CDS 45.0%
CGATGAAATAGCAAAGGCCA+AGG + Chr8:54182288-54182307 MsG0880045098.01.T01:CDS 45.0%
CTGATGCCATTGAGGATCAT+GGG + Chr8:54182224-54182243 MsG0880045098.01.T01:CDS 45.0%
GAGATTGAGGGAAAGACAGT+TGG + Chr8:54181918-54181937 MsG0880045098.01.T01:intron 45.0%
GGAAAATGGGGAGAACTTTG+AGG + Chr8:54182018-54182037 MsG0880045098.01.T01:CDS 45.0%
GGTCTTCATCTCTAGTGACA+GGG + Chr8:54182637-54182656 MsG0880045098.01.T01:CDS 45.0%
GTACAATGAACTCTCTCCCA+AGG + Chr8:54181405-54181424 MsG0880045098.01.T01:CDS 45.0%
GTCTATCCCATGATCCTCAA+TGG - Chr8:54182233-54182252 None:intergenic 45.0%
TCTGTGTCTGTAGGTTTACC+AGG + Chr8:54180924-54180943 MsG0880045098.01.T01:intron 45.0%
TGAAATAGCAAAGGCCAAGG+AGG + Chr8:54182291-54182310 MsG0880045098.01.T01:CDS 45.0%
TGGTCTTCATCTCTAGTGAC+AGG + Chr8:54182636-54182655 MsG0880045098.01.T01:CDS 45.0%
TTGAGAGGCAAGGATAACCA+AGG - Chr8:54182103-54182122 None:intergenic 45.0%
TTGGTTATCCTTGCCTCTCA+AGG + Chr8:54182102-54182121 MsG0880045098.01.T01:CDS 45.0%
TTGTACACCTCCACCAATGT+TGG - Chr8:54181391-54181410 None:intergenic 45.0%
TTTGGAAGAAACTCACGGCA+TGG - Chr8:54182563-54182582 None:intergenic 45.0%
! AAGTGTTTGAGATGCCTCCT+TGG - Chr8:54182308-54182327 None:intergenic 45.0%
! AGGAATTAGAAAGCGTGCCT+TGG + Chr8:54182083-54182102 MsG0880045098.01.T01:CDS 45.0%
! GGATGAAGAGTTTTCCCATC+TGG - Chr8:54182196-54182215 None:intergenic 45.0%
! TCCCCTCCTTCGTTGTTATT+GGG + Chr8:54182170-54182189 MsG0880045098.01.T01:CDS 45.0%
! TCGTTGTTATTGGGCCAGAT+GGG + Chr8:54182179-54182198 MsG0880045098.01.T01:CDS 45.0%
! TTCGTTGTTATTGGGCCAGA+TGG + Chr8:54182178-54182197 MsG0880045098.01.T01:CDS 45.0%
!! AGTTTTGTCCTTGAGAGGCA+AGG - Chr8:54182113-54182132 None:intergenic 45.0%
!!! CTTGAGTCAGTTTTGGTGTC+TGG + Chr8:54182325-54182344 MsG0880045098.01.T01:CDS 45.0%
AAAGAGGCTCGAGATCTGGT+TGG + Chr8:54182809-54182828 MsG0880045098.01.T01:CDS 50.0%
AAGAGGCTCGAGATCTGGTT+GGG + Chr8:54182810-54182829 MsG0880045098.01.T01:CDS 50.0%
AGATCTGGTTGGGCTCTATG+GGG + Chr8:54182820-54182839 MsG0880045098.01.T01:CDS 50.0%
AGTCTCTATCGGGAGAAGAG+AGG - Chr8:54180698-54180717 None:intergenic 50.0%
ATCCGGTGTCCGTGTTTCAT+AGG + Chr8:54181027-54181046 MsG0880045098.01.T01:intron 50.0%
ATCTGGCATTCCCAAGCTTG+TGG + Chr8:54182757-54182776 MsG0880045098.01.T01:CDS 50.0%
ATTCCCAAGCTTGTGGCGAT+CGG + Chr8:54182764-54182783 MsG0880045098.01.T01:CDS 50.0%
CACTCACTCACCAATAGCGA+TGG + Chr8:54180632-54180651 MsG0880045098.01.T01:exon 50.0%
CTCCCCTCCTTCGTTGTTAT+TGG + Chr8:54182169-54182188 MsG0880045098.01.T01:CDS 50.0%
GAAGGAGAGAAGCCCAAAGA+TGG + Chr8:54182905-54182924 MsG0880045098.01.T01:CDS 50.0%
GAGAGAAGCCCAAAGATGGA+TGG + Chr8:54182909-54182928 MsG0880045098.01.T01:CDS 50.0%
GAGATCTGGTTGGGCTCTAT+GGG + Chr8:54182819-54182838 MsG0880045098.01.T01:CDS 50.0%
GCACAAAAAGCTGCCAAGGA+AGG + Chr8:54182887-54182906 MsG0880045098.01.T01:CDS 50.0%
GCCCAATAACAACGAAGGAG+GGG - Chr8:54182174-54182193 None:intergenic 50.0%
GCTGATGCCATTGAGGATCA+TGG + Chr8:54182223-54182242 MsG0880045098.01.T01:CDS 50.0%
GGCCCAATAACAACGAAGGA+GGG - Chr8:54182175-54182194 None:intergenic 50.0%
GGTGTAGTGTCTGTGTCTGT+AGG + Chr8:54180915-54180934 MsG0880045098.01.T01:intron 50.0%
GTTGGAGTGAATGATCGGCA+CGG - Chr8:54181373-54181392 None:intergenic 50.0%
TAATGCCGCTGATGCCATTG+AGG + Chr8:54182216-54182235 MsG0880045098.01.T01:CDS 50.0%
TCAATGGCATCAGCGGCATT+AGG - Chr8:54182217-54182236 None:intergenic 50.0%
TCTGACACCGGAATCTGCAA+TGG - Chr8:54182491-54182510 None:intergenic 50.0%
TGGCCCAATAACAACGAAGG+AGG - Chr8:54182176-54182195 None:intergenic 50.0%
TTTGGGCTTCTCTCCTTCCT+TGG - Chr8:54182903-54182922 None:intergenic 50.0%
! ACGTAGGACTAGCAGAACAG+AGG - Chr8:54180594-54180613 None:intergenic 50.0%
! AGAGGCACAAAAAGCTGCCA+AGG + Chr8:54182883-54182902 MsG0880045098.01.T01:CDS 50.0%
! CTTTTCCAAGATGCCATGGC+TGG + Chr8:54181486-54181505 MsG0880045098.01.T01:CDS 50.0%
ACGTGACGCTGTCAGATACC+TGG - Chr8:54180945-54180964 None:intergenic 55.0%
CACGAAAGAGGCTCGAGATC+TGG + Chr8:54182805-54182824 MsG0880045098.01.T01:CDS 55.0%
CGAGATCTGGTTGGGCTCTA+TGG + Chr8:54182818-54182837 MsG0880045098.01.T01:CDS 55.0%
CTCTCCCAAGGGTGACTTTG+AGG + Chr8:54181417-54181436 MsG0880045098.01.T01:CDS 55.0%
CTTTGCGGAAATGCCATGGC+TGG + Chr8:54182682-54182701 MsG0880045098.01.T01:CDS 55.0%
GAAAGTGGGATAGCCAGCCA+TGG - Chr8:54181502-54181521 None:intergenic 55.0%
GAGCCTCTTTCGTGACAGTC+AGG - Chr8:54182799-54182818 None:intergenic 55.0%
GATAGCCAGCCATGGCATCT+TGG - Chr8:54181494-54181513 None:intergenic 55.0%
GGAAGAAACTCACGGCATGG+AGG - Chr8:54182560-54182579 None:intergenic 55.0%
TCCTCTACTTCTCAGCCCAC+TGG + Chr8:54182531-54182550 MsG0880045098.01.T01:CDS 55.0%
TCTTCGAAACACCGGCGATC+AGG + Chr8:54180722-54180741 MsG0880045098.01.T01:CDS 55.0%
TGGCCTGACTGTCACGAAAG+AGG + Chr8:54182793-54182812 MsG0880045098.01.T01:CDS 55.0%
TGGTGTGTCAGCGTCGTATC+CGG + Chr8:54181010-54181029 MsG0880045098.01.T01:intron 55.0%
TTCGTGACAGTCAGGCCACT+TGG - Chr8:54182791-54182810 None:intergenic 55.0%
!! ACCAGTGGGCTGAGAAGTAG+AGG - Chr8:54182535-54182554 None:intergenic 55.0%
!! AGTGGGCTGAGAAGTAGAGG+AGG - Chr8:54182532-54182551 None:intergenic 55.0%
ACGGCATGGAGGACACCAGT+GGG - Chr8:54182549-54182568 None:intergenic 60.0%
CCATGGCTGGCACTTCCCTT+TGG + Chr8:54182695-54182714 MsG0880045098.01.T01:CDS 60.0%
CTTGTGGCGATCGGACCAAG+TGG + Chr8:54182773-54182792 MsG0880045098.01.T01:CDS 60.0%
GGTCCGATCGCCACAAGCTT+GGG - Chr8:54182770-54182789 None:intergenic 60.0%
TGGTCCGATCGCCACAAGCT+TGG - Chr8:54182771-54182790 None:intergenic 60.0%
!! CCAAAGGGAAGTGCCAGCCA+TGG - Chr8:54182698-54182717 None:intergenic 60.0%
CACGGCATGGAGGACACCAG+TGG - Chr8:54182550-54182569 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 54180509 54183046 54180509 ID=MsG0880045098.01;Name=MsG0880045098.01
Chr8 mRNA 54180509 54183046 54180509 ID=MsG0880045098.01.T01;Parent=MsG0880045098.01;Name=MsG0880045098.01.T01;_AED=0.49;_eAED=0.49;_QI=142|0.66|0.75|1|1|1|4|82|475
Chr8 exon 54180509 54180743 54180509 ID=MsG0880045098.01.T01:exon:23335;Parent=MsG0880045098.01.T01
Chr8 exon 54181307 54181786 54181307 ID=MsG0880045098.01.T01:exon:23336;Parent=MsG0880045098.01.T01
Chr8 exon 54181998 54182384 54181998 ID=MsG0880045098.01.T01:exon:23337;Parent=MsG0880045098.01.T01
Chr8 exon 54182497 54183046 54182497 ID=MsG0880045098.01.T01:exon:23338;Parent=MsG0880045098.01.T01
Chr8 five_prime_UTR 54180509 54180650 54180509 ID=MsG0880045098.01.T01:five_prime_utr;Parent=MsG0880045098.01.T01
Chr8 CDS 54180651 54180743 54180651 ID=MsG0880045098.01.T01:cds;Parent=MsG0880045098.01.T01
Chr8 CDS 54181307 54181786 54181307 ID=MsG0880045098.01.T01:cds;Parent=MsG0880045098.01.T01
Chr8 CDS 54181998 54182384 54181998 ID=MsG0880045098.01.T01:cds;Parent=MsG0880045098.01.T01
Chr8 CDS 54182497 54182964 54182497 ID=MsG0880045098.01.T01:cds;Parent=MsG0880045098.01.T01
Chr8 three_prime_UTR 54182965 54183046 54182965 ID=MsG0880045098.01.T01:three_prime_utr;Parent=MsG0880045098.01.T01
Gene Sequence

>MsG0880045098.01.T01

ATGGCAGATTCTGTTGTTAACGTCACTCACGATCTTCACTCTCTCCTCTCTTCTCCCGATAGAGACTTTCTTCTTCGAAACACCGGCGATCAGGTAAAAATTGATAGCTTGAAGGGAAAGAAACTAGGTTTTTATTTTTCAGCATCATGGTGTGGTCCGTGCCGATCATTCACTCCAACATTGGTGGAGGTGTACAATGAACTCTCTCCCAAGGGTGACTTTGAGGTTGTTTTTGTCTCGCGTGATAAAGATGATGAGACCTTTAACAACTACTTTTCCAAGATGCCATGGCTGGCTATCCCACTTTCTGATTCAGAGAGACTCGGTCGCCTTAAAGAATTGTTTCATGTAAACGGCATTCCTCATCTTGCATTAATCGATGAAACTGGGAAAGTTGTTACTGAAGATGGAGTTCACATTATCCGTGAATATGGAACTGGAGGATACCCTTTCACATTAGAAAGGGTTCAAGAGTTGAAAGATATAGAAGAGGAAGCTAAGAGGAACCAGTCCTTGAGATCGATATTGGTCTCTAGTTCCCGTGACTTTGTGATATCATCCGATAGAAATGAAGAGGTTTACAAAAAGCTGAAGGAAAATGGGGAGAACTTTGAGGTCGTGTTTATACCCTTAGATGATGAGGAAGAGTCATTCAAGAAGGAATTAGAAAGCGTGCCTTGGTTATCCTTGCCTCTCAAGGACAAAACTTGTTTGAAACTAGTTAGGTACTTTGAGCTATCAAAACTCCCCTCCTTCGTTGTTATTGGGCCAGATGGGAAAACTCTTCATCCTAATGCCGCTGATGCCATTGAGGATCATGGGATAGACGCATATCCATTCACTACTGAAAAGTTTTCTGAACTCGATGAAATAGCAAAGGCCAAGGAGGCATCTCAAACACTTGAGTCAGTTTTGGTGTCTGGCGATCAAGATTTTGTCATTGAGAAAGATGGGACGAAGATTCCGGTGTCAGAATTAAAGGGGAAGACTGTCCTCCTCTACTTCTCAGCCCACTGGTGTCCTCCATGCCGTGAGTTTCTTCCAAAACTCATTGATGCGTACCTTAAGATCAAGACACAAGACAATGATGCGCTTGAAGTGGTCTTCATCTCTAGTGACAGGGATCAAGACTCCTTTGATGAATTCTTTGCGGAAATGCCATGGCTGGCACTTCCCTTTGGTGACTCGAGAAAAGAATTTCTAAGTCGTAAATTCAAGGTATCTGGCATTCCCAAGCTTGTGGCGATCGGACCAAGTGGCCTGACTGTCACGAAAGAGGCTCGAGATCTGGTTGGGCTCTATGGGGCAGATGCTTATCCTTTCACTGAGGAGAGAATAAAAGAAATAGAGGCACAAAAAGCTGCCAAGGAAGGAGAGAAGCCCAAAGATGGATGGGTTTGTGATGGAGATGTCTGCACCAAAGCCTGA
Protein sequence

>MsG0880045098.01.T01

MADSVVNVTHDLHSLLSSPDRDFLLRNTGDQVKIDSLKGKKLGFYFSASWCGPCRSFTPTLVEVYNELSPKGDFEVVFVSRDKDDETFNNYFSKMPWLAIPLSDSERLGRLKELFHVNGIPHLALIDETGKVVTEDGVHIIREYGTGGYPFTLERVQELKDIEEEAKRNQSLRSILVSSSRDFVISSDRNEEVYKKLKENGENFEVVFIPLDDEEESFKKELESVPWLSLPLKDKTCLKLVRYFELSKLPSFVVIGPDGKTLHPNAADAIEDHGIDAYPFTTEKFSELDEIAKAKEASQTLESVLVSGDQDFVIEKDGTKIPVSELKGKTVLLYFSAHWCPPCREFLPKLIDAYLKIKTQDNDALEVVFISSDRDQDSFDEFFAEMPWLALPFGDSRKEFLSRKFKVSGIPKLVAIGPSGLTVTKEARDLVGLYGADAYPFTEERIKEIEAQKAAKEGEKPKDGWVCDGDVCTKA*