AlfalfaGEDB | MsG0880045364.01

M. sativa cultivar ZhongmuNo.1 / MsG0880045364.01

KEGG: K05758
GO: GO:0005885 GO:0015629 GO:0030041 GO:0030833 GO:0034314
PFAM: PF04045

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045364.01.T01	AET03441.2	82.353	391	2	2	1	391	1	324	0	630

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045364.01.T01	Q8LGI3	57.179	390	93	5	1	389	1	317	3.79E-149	427

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045364.01.T01	G7L724	82.353	391	2	2	1	391	1	324	0.0	630

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
MsG0180004652.01	MsG0880045364.01	PPI
MsG0580026742.01	MsG0880045364.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045364.01.T01	MTR_8g070640	82.353	391	2	2	1	391	1	324	0.0	630
MsG0880045364.01.T01	MTR_1g045065	36.086	327	170	4	1	327	1	288	7.86e-67	214
MsG0880045364.01.T01	MTR_1g045065	38.017	242	147	3	1	242	1	239	5.92e-51	172

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045364.01.T01	AT1G30825	57.179	390	93	5	1	389	1	317	3.86e-150	427
MsG0880045364.01.T01	AT2G33385	33.333	342	189	4	1	341	1	304	3.43e-65	210
MsG0880045364.01.T01	AT2G33385	32.927	328	181	4	1	327	1	290	3.61e-62	202
MsG0880045364.01.T01	AT2G33385	32.927	328	181	4	1	327	1	290	8.72e-62	203
MsG0880045364.01.T01	AT2G33385	32.317	328	174	5	1	327	1	281	7.47e-58	193

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Find 119 sgRNAs with CRISPR-Local

Find 654 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAATTTACACTAAAA+GGG	0.418550	8:+58154973	None:intergenic
AAAAGAACAATCACATCTTC+AGG	0.440817	8:+58155157	None:intergenic
AAAAGCATGTAGGCTCTTGC+GGG	0.411821	8:-58154863	MsG0880045364.01.T01:three_prime_UTR
AAAAGTAGCATCAGTAAGGG+AGG	0.660193	8:-58162247	MsG0880045364.01.T01:CDS
AAACAAATGCAAAAGCATGT+AGG	0.525187	8:-58154873	MsG0880045364.01.T01:three_prime_UTR
AAACAAATTTACACTAAAAG+GGG	0.547835	8:+58154974	None:intergenic
AACATGCACCAGTAATTCCT+TGG	0.525987	8:+58155205	None:intergenic
AACTTGTGAATGAGGTGGTA+TGG	0.510833	8:-58154939	MsG0880045364.01.T01:three_prime_UTR
AATAAATTACAGGGCACCTG+GGG	0.656110	8:+58155082	None:intergenic
AATGAATGAAAATCTGCAAG+TGG	0.599362	8:-58164890	MsG0880045364.01.T01:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAACAATCACATCTTC+AGG	+	Chr8:58164565-58164584	None:intergenic	30.0%
AAAATCCTGAGCTATATCTA+GGG	+	Chr8:58161772-58161791	None:intergenic	30.0%
AAACATTGTGACAACTTATC+CGG	+	Chr8:58159614-58159633	None:intergenic	30.0%
AAAGCAATTGATCAGAAACA+TGG	+	Chr8:58164119-58164138	None:intergenic	30.0%
AAAGTTGTCTGTAAAACAGA+TGG	-	Chr8:58160711-58160730	MsG0880045364.01.T01:intron	30.0%
AACAAATGCCTTAAAAGGAA+TGG	+	Chr8:58156889-58156908	None:intergenic	30.0%
AAGTTTATTCCCATCTTCAT+GGG	-	Chr8:58158440-58158459	MsG0880045364.01.T01:intron	30.0%
AATGAATGAAAATCTGCAAG+TGG	-	Chr8:58154829-58154848	MsG0880045364.01.T01:three_prime_UTR	30.0%
AATGCAGGATTTGTATCATT+TGG	-	Chr8:58159581-58159600	MsG0880045364.01.T01:intron	30.0%
ACAAATGCCTTAAAAGGAAT+GGG	+	Chr8:58156888-58156907	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	58154813	58164928	58154813	ID=MsG0880045364.01;Name=MsG0880045364.01
Chr8	mRNA	58154813	58164928	58154813	ID=MsG0880045364.01.T01;Parent=MsG0880045364.01;Name=MsG0880045364.01.T01;_AED=0.42;_eAED=0.45;_QI=134\|0.7\|0.72\|1\|0.6\|0.54\|11\|475\|391
Chr8	exon	58154813	58155323	58154813	ID=MsG0880045364.01.T01:exon:24775;Parent=MsG0880045364.01.T01
Chr8	exon	58155436	58155507	58155436	ID=MsG0880045364.01.T01:exon:24774;Parent=MsG0880045364.01.T01
Chr8	exon	58156436	58156470	58156436	ID=MsG0880045364.01.T01:exon:24773;Parent=MsG0880045364.01.T01
Chr8	exon	58158732	58158846	58158732	ID=MsG0880045364.01.T01:exon:24772;Parent=MsG0880045364.01.T01
Chr8	exon	58159852	58160051	58159852	ID=MsG0880045364.01.T01:exon:24771;Parent=MsG0880045364.01.T01
Chr8	exon	58160139	58160271	58160139	ID=MsG0880045364.01.T01:exon:24770;Parent=MsG0880045364.01.T01
Chr8	exon	58160440	58160517	58160440	ID=MsG0880045364.01.T01:exon:24769;Parent=MsG0880045364.01.T01
Chr8	exon	58162122	58162291	58162122	ID=MsG0880045364.01.T01:exon:24768;Parent=MsG0880045364.01.T01
Chr8	exon	58163632	58163839	58163632	ID=MsG0880045364.01.T01:exon:24767;Parent=MsG0880045364.01.T01
Chr8	exon	58164545	58164611	58164545	ID=MsG0880045364.01.T01:exon:24766;Parent=MsG0880045364.01.T01
Chr8	exon	58164733	58164928	58164733	ID=MsG0880045364.01.T01:exon:24765;Parent=MsG0880045364.01.T01
Chr8	five_prime_UTR	58164795	58164928	58164795	ID=MsG0880045364.01.T01:five_prime_utr;Parent=MsG0880045364.01.T01
Chr8	CDS	58164733	58164794	58164733	ID=MsG0880045364.01.T01:cds;Parent=MsG0880045364.01.T01
Chr8	CDS	58164545	58164611	58164545	ID=MsG0880045364.01.T01:cds;Parent=MsG0880045364.01.T01
Chr8	CDS	58163632	58163839	58163632	ID=MsG0880045364.01.T01:cds;Parent=MsG0880045364.01.T01
Chr8	CDS	58162122	58162291	58162122	ID=MsG0880045364.01.T01:cds;Parent=MsG0880045364.01.T01
Chr8	CDS	58160440	58160517	58160440	ID=MsG0880045364.01.T01:cds;Parent=MsG0880045364.01.T01
Chr8	CDS	58160139	58160271	58160139	ID=MsG0880045364.01.T01:cds;Parent=MsG0880045364.01.T01
Chr8	CDS	58159852	58160051	58159852	ID=MsG0880045364.01.T01:cds;Parent=MsG0880045364.01.T01
Chr8	CDS	58158732	58158846	58158732	ID=MsG0880045364.01.T01:cds;Parent=MsG0880045364.01.T01
Chr8	CDS	58156436	58156470	58156436	ID=MsG0880045364.01.T01:cds;Parent=MsG0880045364.01.T01
Chr8	CDS	58155436	58155507	58155436	ID=MsG0880045364.01.T01:cds;Parent=MsG0880045364.01.T01
Chr8	CDS	58155288	58155323	58155288	ID=MsG0880045364.01.T01:cds;Parent=MsG0880045364.01.T01
Chr8	three_prime_UTR	58154813	58155287	58154813	ID=MsG0880045364.01.T01:three_prime_utr;Parent=MsG0880045364.01.T01

Gene Sequence

>MsG0880045364.01.T01

ATGATACTCCTCCAGTCCCATTCTAGATTCTTGCTTCAGACTCTTTTGAATCGCCTTCAAAATATTGAAAAAGGCGTTGAACTCGATCACCACTGGGTTGAATTTGACGATGTCAGATATCACATTCAGGTGTCAATGAAGAATCCTAATATTTTCTTGCTATCCGTATCGTTGCCTACTCCATCTTTGGAAACTATTTTTGTATGTGGACTTCCTTTTGGAGCCATTGAAGCAATCAAAGCTGCATATGGCAGTCTTGTGCAAATTCTGGATCCACCTAGGGATGGCTTTAACCTCACATTGAAGATAAATCTCTCAAAGGTTCCTGCAAATCAAGAGCAAAGACAAGCACTTTTGGTAAAAGTAGCATCAGTAAGGGAGGTCGTCCTTGGTGCACCACTAAGGGTAATTTTAAAACACCTTGCTTCTAGAAATGTTGCTCCGGATATGGATCCACTTGTTGCTCTTGTTCATCGACCAAAGGAGTCTTTTTTTGTTTTTCCTCAGGCTGATAAGGTGACTGTGATGTATCCTATGAGATTCAATGATTCGATAGACATTGTTCTTGCAACTTCATTCTTGCAGGAATTTGTCGAAGCCAGGCGTACAGCTGGACTTAATAATACCCCTCCTTGTTCATGGTCTCATACTCCACCACCTGAACTGAAAGGAGTATCTACTGATGCATTATCTGCAAATGCAGGATTTGTATCATTTGTTATCTTCCCTCGTCATGTTGAAGGCCCAAAACTGGATCGGACAGTATGGAGTCTATCAACTTTTCATGCCTATGTTAGTTATCATGTTAAGGTTGGGGTTTTCTTTGTCCTAATATTCTTCAGTTGCATGCATAAAAATGATATCACTTCATGTGTTAAAGTATTGAGTCATGACAATGCTCTTACAAAGGTTGATTTGTGCTCCGAAGGATTTATGCATACTAGGATGCGTCGTCGTGTGGAGTCTTTGATTCAGGTAATCTTGCATGTTATTTTATACTTGTTCAAGCAAACTTTTGTGGTAGCTCATAGCGGCATGAGGAAAAGGCAAAGATCAATTGCGTTTGTGGCTTTGGGTCGTGCTAAACCAGATCCTGAGAGTTCAAAGAAAACTTCACACAGCAGATCCTTCCAACGACTGAGCCTCAAGGAGTCAAGAACCAACTCGTTTTCATAA

Protein sequence

>MsG0880045364.01.T01

MILLQSHSRFLLQTLLNRLQNIEKGVELDHHWVEFDDVRYHIQVSMKNPNIFLLSVSLPTPSLETIFVCGLPFGAIEAIKAAYGSLVQILDPPRDGFNLTLKINLSKVPANQEQRQALLVKVASVREVVLGAPLRVILKHLASRNVAPDMDPLVALVHRPKESFFVFPQADKVTVMYPMRFNDSIDIVLATSFLQEFVEARRTAGLNNTPPCSWSHTPPPELKGVSTDALSANAGFVSFVIFPRHVEGPKLDRTVWSLSTFHAYVSYHVKVGVFFVLIFFSCMHKNDITSCVKVLSHDNALTKVDLCSEGFMHTRMRRRVESLIQVILHVILYLFKQTFVVAHSGMRKRQRSIAFVALGRAKPDPESSKKTSHSRSFQRLSLKESRTNSFS*