Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880046215.01.T01 | XP_013457684.1 | 98.584 | 353 | 5 | 0 | 1 | 353 | 1 | 353 | 0 | 723 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880046215.01.T01 | A0A072V0Q4 | 98.584 | 353 | 5 | 0 | 1 | 353 | 1 | 353 | 0.0 | 723 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0380011974.01 | MsG0880046215.01 | 0.800301 | 1.537173e-48 | 7.132901e-46 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880046215.01.T01 | MTR_4g102890 | 98.584 | 353 | 5 | 0 | 1 | 353 | 1 | 353 | 0.0 | 723 |
MsG0880046215.01.T01 | MTR_4g102890 | 99.672 | 305 | 1 | 0 | 49 | 353 | 1 | 305 | 0.0 | 636 |
MsG0880046215.01.T01 | MTR_4g104060 | 84.348 | 345 | 51 | 3 | 5 | 348 | 2 | 344 | 0.0 | 588 |
MsG0880046215.01.T01 | MTR_4g104060 | 85.241 | 332 | 46 | 3 | 18 | 348 | 1 | 330 | 0.0 | 571 |
MsG0880046215.01.T01 | MTR_4g102890 | 99.630 | 270 | 1 | 0 | 84 | 353 | 1 | 270 | 0.0 | 564 |
MsG0880046215.01.T01 | MTR_3g099200 | 73.262 | 374 | 70 | 7 | 1 | 353 | 1 | 365 | 0.0 | 538 |
MsG0880046215.01.T01 | MTR_3g099200 | 76.543 | 324 | 53 | 5 | 47 | 353 | 1 | 318 | 1.31e-178 | 498 |
MsG0880046215.01.T01 | MTR_8g079040 | 27.919 | 197 | 130 | 5 | 159 | 343 | 181 | 377 | 3.60e-17 | 83.6 |
MsG0880046215.01.T01 | MTR_8g079020 | 28.426 | 197 | 129 | 5 | 159 | 343 | 181 | 377 | 3.67e-17 | 83.6 |
MsG0880046215.01.T01 | MTR_1g101790 | 29.032 | 186 | 117 | 7 | 174 | 345 | 174 | 358 | 1.77e-14 | 75.1 |
MsG0880046215.01.T01 | MTR_1g101790 | 29.032 | 186 | 117 | 7 | 174 | 345 | 174 | 358 | 2.13e-14 | 74.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880046215.01.T01 | AT4G37100 | 27.397 | 219 | 147 | 6 | 137 | 343 | 164 | 382 | 4.95e-18 | 85.9 |
MsG0880046215.01.T01 | AT2G23520 | 27.397 | 219 | 147 | 6 | 137 | 343 | 160 | 378 | 1.31e-17 | 84.7 |
MsG0880046215.01.T01 | AT5G66950 | 29.545 | 176 | 112 | 5 | 180 | 343 | 201 | 376 | 4.24e-16 | 80.1 |
MsG0880046215.01.T01 | AT5G51920 | 26.275 | 255 | 155 | 10 | 106 | 345 | 115 | 351 | 3.98e-15 | 77.0 |
MsG0880046215.01.T01 | AT4G22980 | 22.426 | 272 | 185 | 7 | 91 | 345 | 68 | 330 | 2.20e-12 | 68.6 |
Find 79 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAATTAGATTTGCATATTC+TGG | 0.163433 | 8:+70642785 | None:intergenic |
AACTGTGTCCTATCCATTTC+AGG | 0.228182 | 8:+70642644 | None:intergenic |
CACCTCAAACGGTTCATCTT+AGG | 0.248883 | 8:-70642030 | None:intergenic |
TCCATTTCTTTCTGTGTGAT+TGG | 0.303785 | 8:+70642839 | None:intergenic |
TCGCCAAGATCGCCTTCTTT+TGG | 0.314541 | 8:-70642677 | MsG0880046215.01.T01:CDS |
ACATAAGCAAATAGCCCTTT+TGG | 0.327876 | 8:+70642260 | None:intergenic |
AACTACTACATGACTATTCT+TGG | 0.330101 | 8:-70642422 | MsG0880046215.01.T01:CDS |
TGGAAGCAACCTTCCTGAAA+TGG | 0.346397 | 8:-70642657 | MsG0880046215.01.T01:CDS |
TTTGCCCGATGATGAGTATT+TGG | 0.358355 | 8:-70642513 | MsG0880046215.01.T01:CDS |
CTTCCAAAAGAAGGCGATCT+TGG | 0.365150 | 8:+70642674 | None:intergenic |
TCTGCTATTAATTTGTGTAT+AGG | 0.365157 | 8:+70643160 | None:intergenic |
TGATTGGACCTGACCATCTT+AGG | 0.370123 | 8:+70642855 | None:intergenic |
TGGCTTGATTTGAGGATTAG+AGG | 0.376978 | 8:-70642326 | MsG0880046215.01.T01:CDS |
GTCAAACAGTTTGGTTATGA+AGG | 0.386145 | 8:-70643128 | MsG0880046215.01.T01:intron |
CTAAGACATGGCTTGATTTG+AGG | 0.386748 | 8:-70642334 | MsG0880046215.01.T01:CDS |
TGAGCAGGAATCACCACATT+TGG | 0.390093 | 8:+70642917 | None:intergenic |
CTGAGGCTCATAGGAACTAT+TGG | 0.395731 | 8:-70642205 | MsG0880046215.01.T01:CDS |
CATATTCTGGATACTTTGCT+AGG | 0.409869 | 8:+70642798 | None:intergenic |
ATTGGGTTTCTGAGGCTCAT+AGG | 0.415008 | 8:-70642214 | MsG0880046215.01.T01:CDS |
CTCAAATCAAGCCATGTCTT+AGG | 0.417224 | 8:+70642335 | None:intergenic |
CATTATCAATGAGGAGCCTT+CGG | 0.420348 | 8:-70642729 | MsG0880046215.01.T01:CDS |
AACCTAAGATGAACCGTTTG+AGG | 0.422517 | 8:+70642028 | None:intergenic |
AGAATATCAAGTAGTCTTGA+TGG | 0.432250 | 8:+70642617 | None:intergenic |
GAATACCAAGTCAAACAGTT+TGG | 0.436290 | 8:-70643137 | MsG0880046215.01.T01:CDS |
TCCAATCACACAGAAAGAAA+TGG | 0.438510 | 8:-70642840 | MsG0880046215.01.T01:CDS |
ACCCTCTCTGTTTGTTCCCA+TGG | 0.445715 | 8:+70643376 | None:intergenic |
AGACAACAAACTAAGAAATC+AGG | 0.449055 | 8:+70642116 | None:intergenic |
AAATGTAAGATTAGTCCAAA+AGG | 0.451312 | 8:-70642275 | MsG0880046215.01.T01:CDS |
TCCAACAGGAACTTTCTTAG+TGG | 0.461813 | 8:+70643183 | None:intergenic |
AATTTGTGTATAGGTCCAAC+AGG | 0.463593 | 8:+70643169 | None:intergenic |
GAATATGCAAATCTAATTGA+AGG | 0.466896 | 8:-70642782 | MsG0880046215.01.T01:CDS |
ATCATAGCATCCTTGTAACT+TGG | 0.468532 | 8:+70642479 | None:intergenic |
GGAAGGTTGCTTCCAAAAGA+AGG | 0.470365 | 8:+70642665 | None:intergenic |
AATGGTAGAAGATGAAGTTA+AGG | 0.470920 | 8:-70643206 | MsG0880046215.01.T01:CDS |
GACATTGACCTAAGATGGTC+AGG | 0.473329 | 8:-70642863 | MsG0880046215.01.T01:CDS |
TTAGGCAATATATCATGAAA+TGG | 0.474165 | 8:-70643224 | MsG0880046215.01.T01:intron |
CATAACCAAACTGTTTGACT+TGG | 0.474370 | 8:+70643132 | None:intergenic |
TAGTAGTTTCCCTTAACAAA+AGG | 0.476225 | 8:+70642437 | None:intergenic |
TGATGCATCTGCAATGGTTG+TGG | 0.477900 | 8:-70642171 | MsG0880046215.01.T01:CDS |
GGAACAAACAGAGAGGGTCT+TGG | 0.479456 | 8:-70643371 | MsG0880046215.01.T01:CDS |
AGAACCAAATACTCATCATC+GGG | 0.504982 | 8:+70642509 | None:intergenic |
GGCTTGATTTGAGGATTAGA+GGG | 0.509192 | 8:-70642325 | MsG0880046215.01.T01:CDS |
CTAATTGAAGGAGATGGAAG+TGG | 0.511234 | 8:-70642770 | MsG0880046215.01.T01:CDS |
GCTTATGTAGCAGATGTGAA+TGG | 0.511879 | 8:-70642245 | MsG0880046215.01.T01:CDS |
GGTATCGAGATGAAACTTCC+CGG | 0.514241 | 8:+70642575 | None:intergenic |
AATGTAAGATTAGTCCAAAA+GGG | 0.515212 | 8:-70642274 | MsG0880046215.01.T01:CDS |
CTTAGGTGCTATGAGAACCT+TGG | 0.517923 | 8:+70642352 | None:intergenic |
GCAAATCTAATTGAAGGAGA+TGG | 0.520214 | 8:-70642776 | MsG0880046215.01.T01:CDS |
GATGCATCTGCAATGGTTGT+GGG | 0.522582 | 8:-70642170 | MsG0880046215.01.T01:CDS |
TCCGAGACATTGACCTAAGA+TGG | 0.525636 | 8:-70642868 | MsG0880046215.01.T01:CDS |
GCTTCAGCTATGATATGAGC+AGG | 0.531260 | 8:+70642902 | None:intergenic |
ATCTGCAATGGTTGTGGGAA+AGG | 0.534566 | 8:-70642165 | MsG0880046215.01.T01:CDS |
GGCTACATGTTGGACTTCAT+AGG | 0.543263 | 8:-70642139 | MsG0880046215.01.T01:CDS |
TTTCTTCTATCATCTGACAT+TGG | 0.547327 | 8:+70642701 | None:intergenic |
CAATGGTTGTGGGAAAGGAT+AGG | 0.550776 | 8:-70642160 | MsG0880046215.01.T01:CDS |
TGTGAATGGGACAATGCATT+GGG | 0.555918 | 8:-70642231 | MsG0880046215.01.T01:CDS |
AAGAACCAAATACTCATCAT+CGG | 0.557250 | 8:+70642508 | None:intergenic |
CTTATGTAGCAGATGTGAAT+GGG | 0.557481 | 8:-70642244 | MsG0880046215.01.T01:CDS |
GACAATGCATTGGGTTTCTG+AGG | 0.557691 | 8:-70642222 | MsG0880046215.01.T01:CDS |
ACAAACAGAGAGGGTCTTGG+AGG | 0.561611 | 8:-70643368 | MsG0880046215.01.T01:CDS |
GTCAAGTTTCATTATCAATG+AGG | 0.565150 | 8:-70642738 | MsG0880046215.01.T01:CDS |
ATGTGAATGGGACAATGCAT+TGG | 0.572793 | 8:-70642232 | MsG0880046215.01.T01:CDS |
GCCACTAAGAAAGTTCCTGT+TGG | 0.572806 | 8:-70643184 | MsG0880046215.01.T01:CDS |
TTTGCTTGATGCATCTGCAA+TGG | 0.577791 | 8:-70642177 | MsG0880046215.01.T01:CDS |
CGAGATGAAACTTCCCGGAA+AGG | 0.583188 | 8:+70642580 | None:intergenic |
GCAACCTTCCTGAAATGGAT+AGG | 0.584340 | 8:-70642652 | MsG0880046215.01.T01:CDS |
ACCATCTTAGGTCAATGTCT+CGG | 0.593089 | 8:+70642867 | None:intergenic |
TATTCTTGGTGAACAACAAG+AGG | 0.595252 | 8:-70642408 | MsG0880046215.01.T01:CDS |
TTCTCATAGCACCTAAGACA+TGG | 0.598496 | 8:-70642346 | MsG0880046215.01.T01:CDS |
GGAAAGGATAGGCTACATGT+TGG | 0.599899 | 8:-70642149 | MsG0880046215.01.T01:CDS |
TCTGACATTGGTAATTCCGA+AGG | 0.602549 | 8:+70642713 | None:intergenic |
CAAGGATGCTATGATGTTGG+TGG | 0.611622 | 8:-70642471 | MsG0880046215.01.T01:CDS |
AGAGGGTCTTGGAGGATCTG+AGG | 0.619322 | 8:-70643360 | MsG0880046215.01.T01:intron |
ACCATGGGAACAAACAGAGA+GGG | 0.637502 | 8:-70643377 | MsG0880046215.01.T01:CDS |
TTACAAGGATGCTATGATGT+TGG | 0.644788 | 8:-70642474 | MsG0880046215.01.T01:CDS |
GTGTCCTATCCATTTCAGGA+AGG | 0.648688 | 8:+70642648 | None:intergenic |
AAGGATGCTATGATGTTGGT+GGG | 0.665370 | 8:-70642470 | MsG0880046215.01.T01:CDS |
ACTTAAACAGAAACCAAATG+TGG | 0.672506 | 8:-70642930 | MsG0880046215.01.T01:intron |
TACCATGGGAACAAACAGAG+AGG | 0.720750 | 8:-70643378 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACTAACAATAAACTTATAAT+TGG | - | Chr8:70642451-70642470 | MsG0880046215.01.T01:CDS | 15.0% |
! | ATCATGGTAAACTATATGTT+AGG | - | Chr8:70642163-70642182 | MsG0880046215.01.T01:CDS | 25.0% |
! | GAAACAAACATGAATTGAAT+AGG | + | Chr8:70642101-70642120 | None:intergenic | 25.0% |
! | GAATATGCAAATCTAATTGA+AGG | - | Chr8:70642623-70642642 | MsG0880046215.01.T01:CDS | 25.0% |
! | TCAATTAGATTTGCATATTC+TGG | + | Chr8:70642623-70642642 | None:intergenic | 25.0% |
! | TTAGGCAATATATCATGAAA+TGG | - | Chr8:70642181-70642200 | MsG0880046215.01.T01:CDS | 25.0% |
!! | AAATGTAAGATTAGTCCAAA+AGG | - | Chr8:70643130-70643149 | MsG0880046215.01.T01:CDS | 25.0% |
!! | AATGTAAGATTAGTCCAAAA+GGG | - | Chr8:70643131-70643150 | MsG0880046215.01.T01:CDS | 25.0% |
!! | AGAAAGTTATCCTTTTGTTA+AGG | - | Chr8:70642958-70642977 | MsG0880046215.01.T01:intron | 25.0% |
!! | AGTTAAGTCAAAATTTTAGG+AGG | - | Chr8:70643107-70643126 | MsG0880046215.01.T01:intron | 25.0% |
!! | CTCAGTTAAGTCAAAATTTT+AGG | - | Chr8:70643104-70643123 | MsG0880046215.01.T01:intron | 25.0% |
!! | GAAAGTTATCCTTTTGTTAA+GGG | - | Chr8:70642959-70642978 | MsG0880046215.01.T01:intron | 25.0% |
!!! | AATAAAGTTTTGAAGCATTG+TGG | - | Chr8:70642869-70642888 | MsG0880046215.01.T01:CDS | 25.0% |
!!! | CAAAGAATTTGCTTCTTTTA+AGG | - | Chr8:70643027-70643046 | MsG0880046215.01.T01:intron | 25.0% |
!!! | TCTGCTATTAATTTGTGTAT+AGG | + | Chr8:70642248-70642267 | None:intergenic | 25.0% |
!!! | TTATTTTGAGCTTGAATTTC+TGG | + | Chr8:70642854-70642873 | None:intergenic | 25.0% |
AACAAAAAATCATCCTTTCC+GGG | - | Chr8:70642812-70642831 | MsG0880046215.01.T01:CDS | 30.0% | |
AACTACTACATGACTATTCT+TGG | - | Chr8:70642983-70643002 | MsG0880046215.01.T01:intron | 30.0% | |
AAGAACCAAATACTCATCAT+CGG | + | Chr8:70642900-70642919 | None:intergenic | 30.0% | |
AATGGTAGAAGATGAAGTTA+AGG | - | Chr8:70642199-70642218 | MsG0880046215.01.T01:CDS | 30.0% | |
ACTTAAACAGAAACCAAATG+TGG | - | Chr8:70642475-70642494 | MsG0880046215.01.T01:CDS | 30.0% | |
AGACAACAAACTAAGAAATC+AGG | + | Chr8:70643292-70643311 | None:intergenic | 30.0% | |
ATCTGCTAATTCTTGAATCA+TGG | - | Chr8:70642147-70642166 | MsG0880046215.01.T01:CDS | 30.0% | |
CAACAAAAAATCATCCTTTC+CGG | - | Chr8:70642811-70642830 | MsG0880046215.01.T01:CDS | 30.0% | |
GTCAAGTTTCATTATCAATG+AGG | - | Chr8:70642667-70642686 | MsG0880046215.01.T01:CDS | 30.0% | |
TAGTAGTTTCCCTTAACAAA+AGG | + | Chr8:70642971-70642990 | None:intergenic | 30.0% | |
TGTAATATTACGTGCATGTT+TGG | + | Chr8:70642417-70642436 | None:intergenic | 30.0% | |
TTCAAAAATCACTTGTCTCT+TGG | - | Chr8:70643333-70643352 | MsG0880046215.01.T01:intron | 30.0% | |
TTTCTTCTATCATCTGACAT+TGG | + | Chr8:70642707-70642726 | None:intergenic | 30.0% | |
! | AAGAGACAAGTGATTTTTGA+AGG | + | Chr8:70643334-70643353 | None:intergenic | 30.0% |
! | AGAATATCAAGTAGTCTTGA+TGG | + | Chr8:70642791-70642810 | None:intergenic | 30.0% |
!! | AAAAGTTTTGACACCTCAAA+CGG | - | Chr8:70643364-70643383 | MsG0880046215.01.T01:CDS | 30.0% |
!! | ACAAGTGATTTTTGAAGGAT+TGG | + | Chr8:70643329-70643348 | None:intergenic | 30.0% |
AATTTGTGTATAGGTCCAAC+AGG | + | Chr8:70642239-70642258 | None:intergenic | 35.0% | |
AGAACCAAATACTCATCATC+GGG | + | Chr8:70642899-70642918 | None:intergenic | 35.0% | |
AGAGTTTGGCAAAATCATAG+CGG | - | Chr8:70642336-70642355 | MsG0880046215.01.T01:CDS | 35.0% | |
ATCATAGCATCCTTGTAACT+TGG | + | Chr8:70642929-70642948 | None:intergenic | 35.0% | |
CATAACCAAACTGTTTGACT+TGG | + | Chr8:70642276-70642295 | None:intergenic | 35.0% | |
CATATTCTGGATACTTTGCT+AGG | + | Chr8:70642610-70642629 | None:intergenic | 35.0% | |
CTTATGTAGCAGATGTGAAT+GGG | - | Chr8:70643161-70643180 | MsG0880046215.01.T01:CDS | 35.0% | |
GAATACCAAGTCAAACAGTT+TGG | - | Chr8:70642268-70642287 | MsG0880046215.01.T01:CDS | 35.0% | |
GCAAATCTAATTGAAGGAGA+TGG | - | Chr8:70642629-70642648 | MsG0880046215.01.T01:CDS | 35.0% | |
GTCAAACAGTTTGGTTATGA+AGG | - | Chr8:70642277-70642296 | MsG0880046215.01.T01:CDS | 35.0% | |
TATTCTTGGTGAACAACAAG+AGG | - | Chr8:70642997-70643016 | MsG0880046215.01.T01:intron | 35.0% | |
TCCAATCACACAGAAAGAAA+TGG | - | Chr8:70642565-70642584 | MsG0880046215.01.T01:CDS | 35.0% | |
TCCATTTCTTTCTGTGTGAT+TGG | + | Chr8:70642569-70642588 | None:intergenic | 35.0% | |
TTACAAGGATGCTATGATGT+TGG | - | Chr8:70642931-70642950 | MsG0880046215.01.T01:intron | 35.0% | |
! | ACATAAGCAAATAGCCCTTT+TGG | + | Chr8:70643148-70643167 | None:intergenic | 35.0% |
! | TCTTTTCACTCCAAGTTACA+AGG | - | Chr8:70642916-70642935 | MsG0880046215.01.T01:CDS | 35.0% |
!! | ACTCTTAGTTTTCCTGAAAG+TGG | - | Chr8:70642310-70642329 | MsG0880046215.01.T01:CDS | 35.0% |
!! | TGCTTCTTTTAAGGAATCCA+AGG | - | Chr8:70643036-70643055 | MsG0880046215.01.T01:intron | 35.0% |
AACTGTGTCCTATCCATTTC+AGG | + | Chr8:70642764-70642783 | None:intergenic | 40.0% | |
AAGGATGCTATGATGTTGGT+GGG | - | Chr8:70642935-70642954 | MsG0880046215.01.T01:intron | 40.0% | |
ACCATCTTAGGTCAATGTCT+CGG | + | Chr8:70642541-70642560 | None:intergenic | 40.0% | |
ATGTGAATGGGACAATGCAT+TGG | - | Chr8:70643173-70643192 | MsG0880046215.01.T01:CDS | 40.0% | |
CATTATCAATGAGGAGCCTT+CGG | - | Chr8:70642676-70642695 | MsG0880046215.01.T01:CDS | 40.0% | |
CCAAACTCTATACCACTTTC+AGG | + | Chr8:70642325-70642344 | None:intergenic | 40.0% | |
CCTGAAAGTGGTATAGAGTT+TGG | - | Chr8:70642322-70642341 | MsG0880046215.01.T01:CDS | 40.0% | |
CTAATTGAAGGAGATGGAAG+TGG | - | Chr8:70642635-70642654 | MsG0880046215.01.T01:CDS | 40.0% | |
CTCAAATCAAGCCATGTCTT+AGG | + | Chr8:70643073-70643092 | None:intergenic | 40.0% | |
GCTTATGTAGCAGATGTGAA+TGG | - | Chr8:70643160-70643179 | MsG0880046215.01.T01:CDS | 40.0% | |
TCCAACAGGAACTTTCTTAG+TGG | + | Chr8:70642225-70642244 | None:intergenic | 40.0% | |
TGTGAATGGGACAATGCATT+GGG | - | Chr8:70643174-70643193 | MsG0880046215.01.T01:CDS | 40.0% | |
TGTTTGGATCGACAGATAAG+TGG | + | Chr8:70642401-70642420 | None:intergenic | 40.0% | |
TTCTCATAGCACCTAAGACA+TGG | - | Chr8:70643059-70643078 | MsG0880046215.01.T01:intron | 40.0% | |
TTTGCCCGATGATGAGTATT+TGG | - | Chr8:70642892-70642911 | MsG0880046215.01.T01:CDS | 40.0% | |
TTTGCTTGATGCATCTGCAA+TGG | - | Chr8:70643228-70643247 | MsG0880046215.01.T01:intron | 40.0% | |
! | CTAAGACATGGCTTGATTTG+AGG | - | Chr8:70643071-70643090 | MsG0880046215.01.T01:intron | 40.0% |
! | GGCTTGATTTGAGGATTAGA+GGG | - | Chr8:70643080-70643099 | MsG0880046215.01.T01:intron | 40.0% |
! | TCTGACATTGGTAATTCCGA+AGG | + | Chr8:70642695-70642714 | None:intergenic | 40.0% |
! | TGGCTTGATTTGAGGATTAG+AGG | - | Chr8:70643079-70643098 | MsG0880046215.01.T01:intron | 40.0% |
ATCTGCAATGGTTGTGGGAA+AGG | - | Chr8:70643240-70643259 | MsG0880046215.01.T01:intron | 45.0% | |
CAAGGATGCTATGATGTTGG+TGG | - | Chr8:70642934-70642953 | MsG0880046215.01.T01:intron | 45.0% | |
CAATGGTTGTGGGAAAGGAT+AGG | - | Chr8:70643245-70643264 | MsG0880046215.01.T01:intron | 45.0% | |
CTGAGGCTCATAGGAACTAT+TGG | - | Chr8:70643200-70643219 | MsG0880046215.01.T01:CDS | 45.0% | |
CTTCCAAAAGAAGGCGATCT+TGG | + | Chr8:70642734-70642753 | None:intergenic | 45.0% | |
GACAATGCATTGGGTTTCTG+AGG | - | Chr8:70643183-70643202 | MsG0880046215.01.T01:CDS | 45.0% | |
GACATTGACCTAAGATGGTC+AGG | - | Chr8:70642542-70642561 | MsG0880046215.01.T01:CDS | 45.0% | |
GATGCATCTGCAATGGTTGT+GGG | - | Chr8:70643235-70643254 | MsG0880046215.01.T01:intron | 45.0% | |
GCAACCTTCCTGAAATGGAT+AGG | - | Chr8:70642753-70642772 | MsG0880046215.01.T01:CDS | 45.0% | |
GCCACTAAGAAAGTTCCTGT+TGG | - | Chr8:70642221-70642240 | MsG0880046215.01.T01:CDS | 45.0% | |
GCTTCAGCTATGATATGAGC+AGG | + | Chr8:70642506-70642525 | None:intergenic | 45.0% | |
GGAAAGGATAGGCTACATGT+TGG | - | Chr8:70643256-70643275 | MsG0880046215.01.T01:intron | 45.0% | |
GGAAGGTTGCTTCCAAAAGA+AGG | + | Chr8:70642743-70642762 | None:intergenic | 45.0% | |
GGCTACATGTTGGACTTCAT+AGG | - | Chr8:70643266-70643285 | MsG0880046215.01.T01:intron | 45.0% | |
GTGTCCTATCCATTTCAGGA+AGG | + | Chr8:70642760-70642779 | None:intergenic | 45.0% | |
TCCGAGACATTGACCTAAGA+TGG | - | Chr8:70642537-70642556 | MsG0880046215.01.T01:CDS | 45.0% | |
TGAGCAGGAATCACCACATT+TGG | + | Chr8:70642491-70642510 | None:intergenic | 45.0% | |
TGATGCATCTGCAATGGTTG+TGG | - | Chr8:70643234-70643253 | MsG0880046215.01.T01:intron | 45.0% | |
TGATTGGACCTGACCATCTT+AGG | + | Chr8:70642553-70642572 | None:intergenic | 45.0% | |
TGGAAGCAACCTTCCTGAAA+TGG | - | Chr8:70642748-70642767 | MsG0880046215.01.T01:CDS | 45.0% | |
! | CTTAGGTGCTATGAGAACCT+TGG | + | Chr8:70643056-70643075 | None:intergenic | 45.0% |
! | GGTATCGAGATGAAACTTCC+CGG | + | Chr8:70642833-70642852 | None:intergenic | 45.0% |
!! | ATTGGGTTTCTGAGGCTCAT+AGG | - | Chr8:70643191-70643210 | MsG0880046215.01.T01:CDS | 45.0% |
ACAAACAGAGAGGGTCTTGG+AGG | - | Chr8:70642037-70642056 | MsG0880046215.01.T01:CDS | 50.0% | |
CGAGATGAAACTTCCCGGAA+AGG | + | Chr8:70642828-70642847 | None:intergenic | 50.0% | |
GGAACAAACAGAGAGGGTCT+TGG | - | Chr8:70642034-70642053 | MsG0880046215.01.T01:CDS | 50.0% | |
! | GTCTTGGAGGATCTGAGGTA+AGG | - | Chr8:70642050-70642069 | MsG0880046215.01.T01:CDS | 50.0% |
! | TCGCCAAGATCGCCTTCTTT+TGG | - | Chr8:70642728-70642747 | MsG0880046215.01.T01:CDS | 50.0% |
AGAGGGTCTTGGAGGATCTG+AGG | - | Chr8:70642045-70642064 | MsG0880046215.01.T01:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 70642031 | 70643396 | 70642031 | ID=MsG0880046215.01;Name=MsG0880046215.01 |
Chr8 | mRNA | 70642031 | 70643396 | 70642031 | ID=MsG0880046215.01.T01;Parent=MsG0880046215.01;Name=MsG0880046215.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|3|0|353 |
Chr8 | exon | 70643361 | 70643396 | 70643361 | ID=MsG0880046215.01.T01:exon:27704;Parent=MsG0880046215.01.T01 |
Chr8 | exon | 70643129 | 70643242 | 70643129 | ID=MsG0880046215.01.T01:exon:27703;Parent=MsG0880046215.01.T01 |
Chr8 | exon | 70642031 | 70642942 | 70642031 | ID=MsG0880046215.01.T01:exon:27702;Parent=MsG0880046215.01.T01 |
Chr8 | CDS | 70643361 | 70643396 | 70643361 | ID=MsG0880046215.01.T01:cds;Parent=MsG0880046215.01.T01 |
Chr8 | CDS | 70643129 | 70643242 | 70643129 | ID=MsG0880046215.01.T01:cds;Parent=MsG0880046215.01.T01 |
Chr8 | CDS | 70642031 | 70642942 | 70642031 | ID=MsG0880046215.01.T01:cds;Parent=MsG0880046215.01.T01 |
Gene Sequence |
Protein sequence |