AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046441.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046441.01.T01 MTR_4g108260 90.365 301 10 2 1 301 1 282 0.0 543
MsG0880046441.01.T01 MTR_7g009930 55.518 299 127 3 7 300 4 301 4.12e-111 326
MsG0880046441.01.T01 MTR_6g011560 52.090 311 137 7 1 301 1 309 2.31e-102 304
MsG0880046441.01.T01 MTR_6g011550 50.482 311 142 7 1 301 1 309 8.06e-99 295
MsG0880046441.01.T01 MTR_6g069630 43.571 280 153 4 25 300 2 280 1.44e-75 235
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046441.01.T01 AT3G47800 58.242 273 113 1 29 301 29 300 5.93e-116 338
MsG0880046441.01.T01 AT5G15140 56.318 277 116 3 27 300 156 430 1.69e-102 308
MsG0880046441.01.T01 AT3G17940 46.350 274 140 4 33 300 11 283 1.04e-82 253
MsG0880046441.01.T01 AT3G01260 42.491 273 137 6 34 302 122 378 3.81e-59 195

Find 97 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTTCTAATCTACGTTTA+AGG 0.102925 8:-73435471 None:intergenic
ACTGGTGTGGGTTTGTTTAC+TGG 0.147997 8:-73436978 None:intergenic
GTCTACTTCGGTGGTCTTAT+TGG 0.151365 8:+73436124 MsG0880046441.01.T01:CDS
TTAGGCTTATTCACAGAATC+TGG 0.255239 8:-73437420 None:intergenic
AATCACACTGTTCAAATCTT+TGG 0.259282 8:+73437059 MsG0880046441.01.T01:CDS
GCATGTTGTGCTAGATTTAC+TGG 0.284935 8:-73436996 None:intergenic
ATTTGACTTCCAACTTGTTT+TGG 0.291351 8:-73437167 None:intergenic
ACCTGTCTCAGGAAGGAAAA+TGG 0.309640 8:+73437277 MsG0880046441.01.T01:CDS
TCTACTTCGGTGGTCTTATT+GGG 0.313290 8:+73436125 MsG0880046441.01.T01:CDS
CGGATTCGAGTTTGCCTGTT+GGG 0.319058 8:-73437115 None:intergenic
ACACTTACGTCAAGCTTTCC+AGG 0.329020 8:-73436903 None:intergenic
GTTCTACATATATATCTCTA+TGG 0.335584 8:+73435528 MsG0880046441.01.T01:five_prime_UTR
TTGTGTCCTCTTGGGGCTCC+TGG 0.337282 8:+73435626 MsG0880046441.01.T01:CDS
CAAGAGGACACAAAATAATA+AGG 0.338110 8:-73435616 None:intergenic
GAAATTGGCCCCACAAAATT+CGG 0.350538 8:-73435497 None:intergenic
GAATAAAATTATATCGTGTT+TGG 0.351335 8:-73437645 None:intergenic
ACAATCTGAGATGGAAAGTT+AGG 0.353204 8:-73437438 None:intergenic
CAAGACAAACCATGTTTATC+AGG 0.353823 8:-73435774 None:intergenic
GTAGAACTGAAGGAGGAAAT+TGG 0.358714 8:-73435512 None:intergenic
ACGTTATCACCGAACCCTTC+TGG 0.368011 8:-73436363 None:intergenic
GTTGCTTGAAAAGAACATAT+TGG 0.382460 8:+73436935 MsG0880046441.01.T01:CDS
TATCATGGTTTATCGATTCA+TGG 0.386506 8:+73437485 MsG0880046441.01.T01:three_prime_UTR
TTCTTTCACTATACAAACTT+TGG 0.389720 8:-73437255 None:intergenic
AGGGTTAATTTGACAAACTA+TGG 0.390776 8:+73435726 MsG0880046441.01.T01:CDS
AGTGAGAAAAGTGAGAAGAT+TGG 0.391101 8:+73435675 MsG0880046441.01.T01:CDS
TTATTGGGCGTGTGGCAAAT+AGG 0.397686 8:+73436140 MsG0880046441.01.T01:CDS
CAAGTATGGTGGCATTGCTT+TGG 0.405496 8:+73437383 MsG0880046441.01.T01:three_prime_UTR
TGTGGGTTTGTTTACTGGCT+TGG 0.409918 8:-73436973 None:intergenic
AGTCAAATTAATGACCTTCC+TGG 0.412379 8:+73437182 MsG0880046441.01.T01:CDS
TTGCTTGAAAAGAACATATT+GGG 0.414739 8:+73436936 MsG0880046441.01.T01:CDS
AAAGTGGCTGATGTTGTTCT+TGG 0.422078 8:+73435876 MsG0880046441.01.T01:CDS
ATCTAGCACAACATGCATAC+TGG 0.440235 8:+73437003 MsG0880046441.01.T01:CDS
CACCACTGTTGTGGCCTCCT+AGG 0.441891 8:-73437028 None:intergenic
CAACATGCATACTGGAACCT+AGG 0.444782 8:+73437011 MsG0880046441.01.T01:CDS
ATCATATGGCGTGTTCTTCA+CGG 0.448723 8:-73437135 None:intergenic
AATGATAACATTGTGTATAC+TGG 0.450709 8:+73437620 MsG0880046441.01.T01:three_prime_UTR
TTTGGTTTAAGAAAATCATA+TGG 0.452234 8:-73437149 None:intergenic
GGAGCTACATATCACAAGTA+TGG 0.454827 8:+73437369 MsG0880046441.01.T01:three_prime_UTR
AAATTGCCAGCTAATGATCA+TGG 0.472562 8:+73436202 MsG0880046441.01.T01:CDS
GATGATAAACTCATCCCAAC+AGG 0.473597 8:+73437101 MsG0880046441.01.T01:CDS
CCATCTCAGATTGTGAAGCC+TGG 0.483704 8:+73437447 MsG0880046441.01.T01:three_prime_UTR
TGCAGGTGGCCAGAAGGGTT+CGG 0.485271 8:+73436354 MsG0880046441.01.T01:intron
TGGAGGAGCTCAATTCACTT+TGG 0.490944 8:+73436165 MsG0880046441.01.T01:CDS
ATATGCTTGTATGTCTCTCC+AGG 0.492010 8:-73437465 None:intergenic
TTTCTTAAACCAAAACAAGT+TGG 0.500799 8:+73437158 MsG0880046441.01.T01:CDS
TGTGCTAGATTTACTGGTGT+GGG 0.510614 8:-73436990 None:intergenic
AACTATGCAATTGACGTGAA+TGG 0.514094 8:+73437218 MsG0880046441.01.T01:CDS
GGAGCTCAATTCACTTTGGA+TGG 0.518150 8:+73436169 MsG0880046441.01.T01:CDS
TATAGTATTGCAATCCAACT+TGG 0.523209 8:-73437313 None:intergenic
CCAGGCTTCACAATCTGAGA+TGG 0.524924 8:-73437447 None:intergenic
GGGCGTGTGGCAAATAGGAT+TGG 0.526639 8:+73436145 MsG0880046441.01.T01:CDS
TAGGCTTATTCACAGAATCT+GGG 0.535737 8:-73437419 None:intergenic
AAGGGTTCGGTGATAACGTA+TGG 0.537443 8:+73436367 MsG0880046441.01.T01:CDS
TGATTCCATTGAGCAATATG+AGG 0.542382 8:+73435902 MsG0880046441.01.T01:CDS
GGGATGAGTTTATCATCTAC+CGG 0.542823 8:-73437095 None:intergenic
TATATATGTAGAACTGAAGG+AGG 0.543464 8:-73435519 None:intergenic
ATAGTGAAAGAACCTGTCTC+AGG 0.544121 8:+73437266 MsG0880046441.01.T01:CDS
GACTGATACTAAAGGAAGGA+TGG 0.544886 8:+73437348 MsG0880046441.01.T01:exon
GAAATTGCAGGTGGCCAGAA+GGG 0.545247 8:+73436349 MsG0880046441.01.T01:intron
GTGTTCCCATGATCATTAGC+TGG 0.546884 8:-73436208 None:intergenic
TTGTGCTAGATTTACTGGTG+TGG 0.547703 8:-73436991 None:intergenic
TCATACCTCATATTGCTCAA+TGG 0.551688 8:-73435907 None:intergenic
TGAAATTTGATGCAGACTGA+TGG 0.555921 8:+73436100 MsG0880046441.01.T01:intron
CGGTGGTCTTATTGGGCGTG+TGG 0.557522 8:+73436132 MsG0880046441.01.T01:CDS
TGAAATTGCAGGTGGCCAGA+AGG 0.558610 8:+73436348 MsG0880046441.01.T01:intron
AGATATATATGTAGAACTGA+AGG 0.560239 8:-73435522 None:intergenic
CGTGTGGCAAATAGGATTGG+AGG 0.564047 8:+73436148 MsG0880046441.01.T01:CDS
GAGAAATAATTGTTCAACAA+TGG 0.565502 8:+73435584 MsG0880046441.01.T01:exon
ACGGATTCGAGTTTGCCTGT+TGG 0.566013 8:-73437116 None:intergenic
TAATTGTTCAACAATGGCTA+AGG 0.569688 8:+73435590 MsG0880046441.01.T01:exon
TTTATCATCTACCGGTGTGA+TGG 0.578356 8:-73437087 None:intergenic
GATCATGGGAACACACTCCA+TGG 0.584348 8:+73436217 MsG0880046441.01.T01:CDS
GGCATTGCTTTGGAGACACA+AGG 0.585444 8:+73437393 MsG0880046441.01.T01:three_prime_UTR
AATTGCCAGCTAATGATCAT+GGG 0.589702 8:+73436203 MsG0880046441.01.T01:CDS
GAGTTGTGGTCAAACCAAGT+TGG 0.590032 8:+73437299 MsG0880046441.01.T01:CDS
AGAGACATACAAGCATATCA+TGG 0.596154 8:+73437470 MsG0880046441.01.T01:three_prime_UTR
AAGCTAAACGATGAACAAGA+AGG 0.611281 8:-73437567 None:intergenic
CAGACTGATGGAGTCTACTT+CGG 0.614831 8:+73436112 MsG0880046441.01.T01:intron
ATATTAATATTAACGTACCA+TGG 0.616948 8:-73436234 None:intergenic
TGAAAGAACCTGTCTCAGGA+AGG 0.620515 8:+73437270 MsG0880046441.01.T01:CDS
GTTTATGTACCTGATAAACA+TGG 0.622676 8:+73435765 MsG0880046441.01.T01:CDS
TTCACCATCAAAACTGTGGT+AGG 0.630989 8:-73436430 None:intergenic
TGAATGTTGACTGATACTAA+AGG 0.636512 8:+73437340 MsG0880046441.01.T01:exon
TAAGAATGTCACCACTGTTG+TGG 0.637458 8:-73437037 None:intergenic
CAGGAAGGAAAATGGAGTTG+TGG 0.640117 8:+73437285 MsG0880046441.01.T01:CDS
TAATGTCGTATAAACCAGGA+AGG 0.653054 8:-73437196 None:intergenic
TAGTTAATGTCGTATAAACC+AGG 0.656726 8:-73437200 None:intergenic
CATGCATACTGGAACCTAGG+AGG 0.665406 8:+73437014 MsG0880046441.01.T01:CDS
AATGTGCATAAGTGTGAACC+AGG 0.665476 8:-73435644 None:intergenic
ACTGATGGAGTCTACTTCGG+TGG 0.669276 8:+73436115 MsG0880046441.01.T01:CDS
GCTACATATCACAAGTATGG+TGG 0.672659 8:+73437372 MsG0880046441.01.T01:three_prime_UTR
AACCTAGGAGGCCACAACAG+TGG 0.673482 8:+73437026 MsG0880046441.01.T01:CDS
CTTTGGTTCATCCATCACAC+CGG 0.680058 8:+73437076 MsG0880046441.01.T01:CDS
CTTGTTCACCATCAAAACTG+TGG 0.689661 8:-73436434 None:intergenic
ATGGAAAGTAGCAGTTCACA+AGG 0.691394 8:+73436386 MsG0880046441.01.T01:CDS
TGTGAACCAGGAGCCCCAAG+AGG 0.695938 8:-73435632 None:intergenic
TGTTGACTGATACTAAAGGA+AGG 0.699770 8:+73437344 MsG0880046441.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTTATATAAATATTAATG+TGG - Chr8:73435833-73435852 None:intergenic 10.0%
!!! TTCAAAATTTAAAATCAAAA+CGG - Chr8:73436769-73436788 None:intergenic 10.0%
!! ATAAATATTAATGTGGAATA+AGG - Chr8:73435826-73435845 None:intergenic 15.0%
!! ATACTATATATAGAGAAAAT+TGG + Chr8:73436021-73436040 MsG0880046441.01.T01:intron 15.0%
!! TAAATATTAATGTGGAATAA+GGG - Chr8:73435825-73435844 None:intergenic 15.0%
!! ATATTAATATTAACGTACCA+TGG - Chr8:73436237-73436256 None:intergenic 20.0%
!! CTGAATAGTTAAATTATATG+TGG - Chr8:73436488-73436507 None:intergenic 20.0%
!! GAATAAAATTATATCGTGTT+TGG - Chr8:73437648-73437667 None:intergenic 20.0%
!! GTTTCTGATAAATAATTTAC+AGG + Chr8:73436263-73436282 MsG0880046441.01.T01:intron 20.0%
!! TACGATTCTTTGTAATATTA+AGG + Chr8:73436611-73436630 MsG0880046441.01.T01:intron 20.0%
!!! GGATTTTATGAGTTAAAAAA+AGG + Chr8:73435696-73435715 MsG0880046441.01.T01:CDS 20.0%
!!! TTTGGTTTAAGAAAATCATA+TGG - Chr8:73437152-73437171 None:intergenic 20.0%
!!! TTTTTTTATTCACTTTTCCA+GGG + Chr8:73435853-73435872 MsG0880046441.01.T01:intron 20.0%
!!! TTTTTTTTATTCACTTTTCC+AGG + Chr8:73435852-73435871 MsG0880046441.01.T01:intron 20.0%
! AACTTTCTAATCTACGTTTA+AGG - Chr8:73435474-73435493 None:intergenic 25.0%
! AATGATAACATTGTGTATAC+TGG + Chr8:73437620-73437639 MsG0880046441.01.T01:three_prime_UTR 25.0%
! AGATATATATGTAGAACTGA+AGG - Chr8:73435525-73435544 None:intergenic 25.0%
! ATAGTTAAATTATATGTGGC+AGG - Chr8:73436484-73436503 None:intergenic 25.0%
! GAGAAATAATTGTTCAACAA+TGG + Chr8:73435584-73435603 MsG0880046441.01.T01:exon 25.0%
! GTTCTACATATATATCTCTA+TGG + Chr8:73435528-73435547 MsG0880046441.01.T01:five_prime_UTR 25.0%
! TTAATCATTGATGAAATTGC+AGG + Chr8:73436337-73436356 MsG0880046441.01.T01:intron 25.0%
! TTCTTTCACTATACAAACTT+TGG - Chr8:73437258-73437277 None:intergenic 25.0%
! TTGCTTGAAAAGAACATATT+GGG + Chr8:73436936-73436955 MsG0880046441.01.T01:CDS 25.0%
! TTTCTTAAACCAAAACAAGT+TGG + Chr8:73437158-73437177 MsG0880046441.01.T01:CDS 25.0%
! TTTGCAAAATAAAACTCAAC+AGG + Chr8:73436876-73436895 MsG0880046441.01.T01:intron 25.0%
!! AAAGTTAATCCGAATTTTGT+GGG + Chr8:73435488-73435507 MsG0880046441.01.T01:five_prime_UTR 25.0%
!! AGTTAAAAAAAGGAAGTATG+AGG + Chr8:73435706-73435725 MsG0880046441.01.T01:CDS 25.0%
!! GTTAAAAAAAGGAAGTATGA+GGG + Chr8:73435707-73435726 MsG0880046441.01.T01:CDS 25.0%
!!! AGTTTTATTGCTACAAACAT+GGG - Chr8:73436837-73436856 None:intergenic 25.0%
!!! TAGTTTTATTGCTACAAACA+TGG - Chr8:73436838-73436857 None:intergenic 25.0%
!!! TTATTATTTTGTGTCCTCTT+GGG + Chr8:73435618-73435637 MsG0880046441.01.T01:CDS 25.0%
AATCACACTGTTCAAATCTT+TGG + Chr8:73437059-73437078 MsG0880046441.01.T01:CDS 30.0%
CAAAGAATCGTATACAAATG+AGG - Chr8:73436603-73436622 None:intergenic 30.0%
CAAGAGGACACAAAATAATA+AGG - Chr8:73435619-73435638 None:intergenic 30.0%
GTTGCTTGAAAAGAACATAT+TGG + Chr8:73436935-73436954 MsG0880046441.01.T01:CDS 30.0%
GTTTATGTACCTGATAAACA+TGG + Chr8:73435765-73435784 MsG0880046441.01.T01:CDS 30.0%
TAATTGTTCAACAATGGCTA+AGG + Chr8:73435590-73435609 MsG0880046441.01.T01:exon 30.0%
TAGTTAATGTCGTATAAACC+AGG - Chr8:73437203-73437222 None:intergenic 30.0%
TATAGTATTGCAATCCAACT+TGG - Chr8:73437316-73437335 None:intergenic 30.0%
TATATATGTAGAACTGAAGG+AGG - Chr8:73435522-73435541 None:intergenic 30.0%
! AAGTTAATCCGAATTTTGTG+GGG + Chr8:73435489-73435508 MsG0880046441.01.T01:five_prime_UTR 30.0%
! AGGGTTAATTTGACAAACTA+TGG + Chr8:73435726-73435745 MsG0880046441.01.T01:CDS 30.0%
! GAAAGTTAATCCGAATTTTG+TGG + Chr8:73435487-73435506 MsG0880046441.01.T01:five_prime_UTR 30.0%
! TGAATGTTGACTGATACTAA+AGG + Chr8:73437340-73437359 MsG0880046441.01.T01:exon 30.0%
!! ATTTGACTTCCAACTTGTTT+TGG - Chr8:73437170-73437189 None:intergenic 30.0%
!! CTTATTATTTTGTGTCCTCT+TGG + Chr8:73435617-73435636 MsG0880046441.01.T01:CDS 30.0%
!! GTTTTATTGCTACAAACATG+GGG - Chr8:73436836-73436855 None:intergenic 30.0%
!! TATCATGGTTTATCGATTCA+TGG + Chr8:73437485-73437504 MsG0880046441.01.T01:three_prime_UTR 30.0%
!! TATTATTTTGTGTCCTCTTG+GGG + Chr8:73435619-73435638 MsG0880046441.01.T01:CDS 30.0%
!!! CTTGGTTGTTTGTTTTATCA+CGG + Chr8:73436667-73436686 MsG0880046441.01.T01:intron 30.0%
AAATTGCCAGCTAATGATCA+TGG + Chr8:73436202-73436221 MsG0880046441.01.T01:CDS 35.0%
AACTATGCAATTGACGTGAA+TGG + Chr8:73437218-73437237 MsG0880046441.01.T01:CDS 35.0%
AAGCTAAACGATGAACAAGA+AGG - Chr8:73437570-73437589 None:intergenic 35.0%
AATTGCCAGCTAATGATCAT+GGG + Chr8:73436203-73436222 MsG0880046441.01.T01:CDS 35.0%
AGAGACATACAAGCATATCA+TGG + Chr8:73437470-73437489 MsG0880046441.01.T01:three_prime_UTR 35.0%
AGTCAAATTAATGACCTTCC+TGG + Chr8:73437182-73437201 MsG0880046441.01.T01:CDS 35.0%
AGTGAGAAAAGTGAGAAGAT+TGG + Chr8:73435675-73435694 MsG0880046441.01.T01:CDS 35.0%
ATCATTGATGAAATTGCAGG+TGG + Chr8:73436340-73436359 MsG0880046441.01.T01:intron 35.0%
CAAGACAAACCATGTTTATC+AGG - Chr8:73435777-73435796 None:intergenic 35.0%
CGTGATAAAACAAACAACCA+AGG - Chr8:73436669-73436688 None:intergenic 35.0%
TAATGTCGTATAAACCAGGA+AGG - Chr8:73437199-73437218 None:intergenic 35.0%
TAGGCTTATTCACAGAATCT+GGG - Chr8:73437422-73437441 None:intergenic 35.0%
TCATACCTCATATTGCTCAA+TGG - Chr8:73435910-73435929 None:intergenic 35.0%
TGAAATTTGATGCAGACTGA+TGG + Chr8:73436100-73436119 MsG0880046441.01.T01:intron 35.0%
TGATTCCATTGAGCAATATG+AGG + Chr8:73435902-73435921 MsG0880046441.01.T01:CDS 35.0%
TTAGGCTTATTCACAGAATC+TGG - Chr8:73437423-73437442 None:intergenic 35.0%
! ACAATCTGAGATGGAAAGTT+AGG - Chr8:73437441-73437460 None:intergenic 35.0%
! ATGCATTTGGTTCAAATCGT+GGG + Chr8:73436055-73436074 MsG0880046441.01.T01:intron 35.0%
! GGATCAATAGTTGATGCATT+TGG + Chr8:73436042-73436061 MsG0880046441.01.T01:intron 35.0%
! TAAAACTCAACAGGTTTTCC+TGG + Chr8:73436885-73436904 MsG0880046441.01.T01:intron 35.0%
! TGTTGACTGATACTAAAGGA+AGG + Chr8:73437344-73437363 MsG0880046441.01.T01:exon 35.0%
!! TTTACCTACCACAGTTTTGA+TGG + Chr8:73436426-73436445 MsG0880046441.01.T01:CDS 35.0%
AAAGTGGCTGATGTTGTTCT+TGG + Chr8:73435876-73435895 MsG0880046441.01.T01:CDS 40.0%
AATGTGCATAAGTGTGAACC+AGG - Chr8:73435647-73435666 None:intergenic 40.0%
ATAGTGAAAGAACCTGTCTC+AGG + Chr8:73437266-73437285 MsG0880046441.01.T01:CDS 40.0%
ATATGCTTGTATGTCTCTCC+AGG - Chr8:73437468-73437487 None:intergenic 40.0%
ATCATATGGCGTGTTCTTCA+CGG - Chr8:73437138-73437157 None:intergenic 40.0%
ATCTAGCACAACATGCATAC+TGG + Chr8:73437003-73437022 MsG0880046441.01.T01:CDS 40.0%
ATGGAAAGTAGCAGTTCACA+AGG + Chr8:73436386-73436405 MsG0880046441.01.T01:CDS 40.0%
CTTGTTCACCATCAAAACTG+TGG - Chr8:73436437-73436456 None:intergenic 40.0%
GAAATTGGCCCCACAAAATT+CGG - Chr8:73435500-73435519 None:intergenic 40.0%
GACTGATACTAAAGGAAGGA+TGG + Chr8:73437348-73437367 MsG0880046441.01.T01:exon 40.0%
GATGATAAACTCATCCCAAC+AGG + Chr8:73437101-73437120 MsG0880046441.01.T01:CDS 40.0%
GCACTAACGGTGTGAATTTA+GGG - Chr8:73436724-73436743 None:intergenic 40.0%
GCATGTTGTGCTAGATTTAC+TGG - Chr8:73436999-73437018 None:intergenic 40.0%
GCTACATATCACAAGTATGG+TGG + Chr8:73437372-73437391 MsG0880046441.01.T01:three_prime_UTR 40.0%
GGAGCTACATATCACAAGTA+TGG + Chr8:73437369-73437388 MsG0880046441.01.T01:three_prime_UTR 40.0%
GGGATGAGTTTATCATCTAC+CGG - Chr8:73437098-73437117 None:intergenic 40.0%
GTAGAACTGAAGGAGGAAAT+TGG - Chr8:73435515-73435534 None:intergenic 40.0%
GTATACAAATGAGGCTGATG+TGG - Chr8:73436594-73436613 None:intergenic 40.0%
GTTACCACAATCGAAAACCT+TGG + Chr8:73436649-73436668 MsG0880046441.01.T01:intron 40.0%
TAAGAATGTCACCACTGTTG+TGG - Chr8:73437040-73437059 None:intergenic 40.0%
TGCACTAACGGTGTGAATTT+AGG - Chr8:73436725-73436744 None:intergenic 40.0%
TGTGCTAGATTTACTGGTGT+GGG - Chr8:73436993-73437012 None:intergenic 40.0%
TTCACCATCAAAACTGTGGT+AGG - Chr8:73436433-73436452 None:intergenic 40.0%
TTGTGCTAGATTTACTGGTG+TGG - Chr8:73436994-73437013 None:intergenic 40.0%
TTTATCATCTACCGGTGTGA+TGG - Chr8:73437090-73437109 None:intergenic 40.0%
! ACAACCAAGGTTTTCGATTG+TGG - Chr8:73436656-73436675 None:intergenic 40.0%
! GATGCATTTGGTTCAAATCG+TGG + Chr8:73436054-73436073 MsG0880046441.01.T01:intron 40.0%
!! ATTCACTTTTCCAGGGAAAG+TGG + Chr8:73435860-73435879 MsG0880046441.01.T01:intron 40.0%
!! TCTACTTCGGTGGTCTTATT+GGG + Chr8:73436125-73436144 MsG0880046441.01.T01:CDS 40.0%
!!! CACAGTTTTGATGGTGAACA+AGG + Chr8:73436435-73436454 MsG0880046441.01.T01:CDS 40.0%
ACACTTACGTCAAGCTTTCC+AGG - Chr8:73436906-73436925 None:intergenic 45.0%
ACCTGTCTCAGGAAGGAAAA+TGG + Chr8:73437277-73437296 MsG0880046441.01.T01:CDS 45.0%
CAACATGCATACTGGAACCT+AGG + Chr8:73437011-73437030 MsG0880046441.01.T01:CDS 45.0%
CAAGTATGGTGGCATTGCTT+TGG + Chr8:73437383-73437402 MsG0880046441.01.T01:three_prime_UTR 45.0%
CAGACTGATGGAGTCTACTT+CGG + Chr8:73436112-73436131 MsG0880046441.01.T01:intron 45.0%
CAGGAAGGAAAATGGAGTTG+TGG + Chr8:73437285-73437304 MsG0880046441.01.T01:CDS 45.0%
GACAGTCATCGATGCACTAA+CGG - Chr8:73436737-73436756 None:intergenic 45.0%
GAGTTGTGGTCAAACCAAGT+TGG + Chr8:73437299-73437318 MsG0880046441.01.T01:CDS 45.0%
GGAGCTCAATTCACTTTGGA+TGG + Chr8:73436169-73436188 MsG0880046441.01.T01:CDS 45.0%
GTGTTCCCATGATCATTAGC+TGG - Chr8:73436211-73436230 None:intergenic 45.0%
TGAAAGAACCTGTCTCAGGA+AGG + Chr8:73437270-73437289 MsG0880046441.01.T01:CDS 45.0%
TGGAGGAGCTCAATTCACTT+TGG + Chr8:73436165-73436184 MsG0880046441.01.T01:CDS 45.0%
TTATTGGGCGTGTGGCAAAT+AGG + Chr8:73436140-73436159 MsG0880046441.01.T01:CDS 45.0%
! ACTGGTGTGGGTTTGTTTAC+TGG - Chr8:73436981-73437000 None:intergenic 45.0%
! CTTTGGTTCATCCATCACAC+CGG + Chr8:73437076-73437095 MsG0880046441.01.T01:CDS 45.0%
! TCCATTTTCCTTCCTGAGAC+AGG - Chr8:73437281-73437300 None:intergenic 45.0%
! TGTGGGTTTGTTTACTGGCT+TGG - Chr8:73436976-73436995 None:intergenic 45.0%
!! AAGGGTTCGGTGATAACGTA+TGG + Chr8:73436367-73436386 MsG0880046441.01.T01:CDS 45.0%
!! GTCTACTTCGGTGGTCTTAT+TGG + Chr8:73436124-73436143 MsG0880046441.01.T01:CDS 45.0%
ACGTTATCACCGAACCCTTC+TGG - Chr8:73436366-73436385 None:intergenic 50.0%
ACTGATGGAGTCTACTTCGG+TGG + Chr8:73436115-73436134 MsG0880046441.01.T01:CDS 50.0%
CATGCATACTGGAACCTAGG+AGG + Chr8:73437014-73437033 MsG0880046441.01.T01:CDS 50.0%
CCAGGCTTCACAATCTGAGA+TGG - Chr8:73437450-73437469 None:intergenic 50.0%
CCATCTCAGATTGTGAAGCC+TGG + Chr8:73437447-73437466 MsG0880046441.01.T01:three_prime_UTR 50.0%
CGTGTGGCAAATAGGATTGG+AGG + Chr8:73436148-73436167 MsG0880046441.01.T01:CDS 50.0%
GAAATTGCAGGTGGCCAGAA+GGG + Chr8:73436349-73436368 MsG0880046441.01.T01:intron 50.0%
GATCATGGGAACACACTCCA+TGG + Chr8:73436217-73436236 MsG0880046441.01.T01:CDS 50.0%
TGAAATTGCAGGTGGCCAGA+AGG + Chr8:73436348-73436367 MsG0880046441.01.T01:intron 50.0%
TGTTGCTGCGACTGCGTTTA+AGG + Chr8:73436568-73436587 MsG0880046441.01.T01:intron 50.0%
! ACAACATCAGCCACTTTCCC+TGG - Chr8:73435873-73435892 None:intergenic 50.0%
! ACGGATTCGAGTTTGCCTGT+TGG - Chr8:73437119-73437138 None:intergenic 50.0%
! CGGATTCGAGTTTGCCTGTT+GGG - Chr8:73437118-73437137 None:intergenic 50.0%
!! GGCATTGCTTTGGAGACACA+AGG + Chr8:73437393-73437412 MsG0880046441.01.T01:three_prime_UTR 50.0%
AACCTAGGAGGCCACAACAG+TGG + Chr8:73437026-73437045 MsG0880046441.01.T01:CDS 55.0%
GGGCGTGTGGCAAATAGGAT+TGG + Chr8:73436145-73436164 MsG0880046441.01.T01:CDS 55.0%
CACCACTGTTGTGGCCTCCT+AGG - Chr8:73437031-73437050 None:intergenic 60.0%
TGCAGGTGGCCAGAAGGGTT+CGG + Chr8:73436354-73436373 MsG0880046441.01.T01:intron 60.0%
TGTGAACCAGGAGCCCCAAG+AGG - Chr8:73435635-73435654 None:intergenic 60.0%
TTGTGTCCTCTTGGGGCTCC+TGG + Chr8:73435626-73435645 MsG0880046441.01.T01:CDS 60.0%
!! CGGTGGTCTTATTGGGCGTG+TGG + Chr8:73436132-73436151 MsG0880046441.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 73435469 73437708 73435469 ID=MsG0880046441.01;Name=MsG0880046441.01
Chr8 mRNA 73435469 73437708 73435469 ID=MsG0880046441.01.T01;Parent=MsG0880046441.01;Name=MsG0880046441.01.T01;_AED=0.48;_eAED=0.49;_QI=134|0.75|0.8|1|0.75|0.6|5|359|303
Chr8 exon 73435469 73435786 73435469 ID=MsG0880046441.01.T01:exon:11729;Parent=MsG0880046441.01.T01
Chr8 exon 73435874 73435923 73435874 ID=MsG0880046441.01.T01:exon:11730;Parent=MsG0880046441.01.T01
Chr8 exon 73436115 73436242 73436115 ID=MsG0880046441.01.T01:exon:11731;Parent=MsG0880046441.01.T01
Chr8 exon 73436359 73436456 73436359 ID=MsG0880046441.01.T01:exon:11732;Parent=MsG0880046441.01.T01
Chr8 exon 73436898 73437708 73436898 ID=MsG0880046441.01.T01:exon:11733;Parent=MsG0880046441.01.T01
Chr8 five_prime_UTR 73435469 73435602 73435469 ID=MsG0880046441.01.T01:five_prime_utr;Parent=MsG0880046441.01.T01
Chr8 CDS 73435603 73435786 73435603 ID=MsG0880046441.01.T01:cds;Parent=MsG0880046441.01.T01
Chr8 CDS 73435874 73435923 73435874 ID=MsG0880046441.01.T01:cds;Parent=MsG0880046441.01.T01
Chr8 CDS 73436115 73436242 73436115 ID=MsG0880046441.01.T01:cds;Parent=MsG0880046441.01.T01
Chr8 CDS 73436359 73436456 73436359 ID=MsG0880046441.01.T01:cds;Parent=MsG0880046441.01.T01
Chr8 CDS 73436898 73437349 73436898 ID=MsG0880046441.01.T01:cds;Parent=MsG0880046441.01.T01
Chr8 three_prime_UTR 73437350 73437708 73437350 ID=MsG0880046441.01.T01:three_prime_utr;Parent=MsG0880046441.01.T01
Gene Sequence

>MsG0880046441.01.T01

ATGGCTAAGGTATCCTTATTATTTTGTGTCCTCTTGGGGCTCCTGGTTCACACTTATGCACATTCACATAGAAGTGAGAAAAGTGAGAAGATTGGATTTTATGAGTTAAAAAAAGGAAGTATGAGGGTTAATTTGACAAACTATGGTGCTTCAATTGTCGCTGTTTATGTACCTGATAAACATGGGAAAGTGGCTGATGTTGTTCTTGGCTATGATTCCATTGAGCAATATGAGACTGATGGAGTCTACTTCGGTGGTCTTATTGGGCGTGTGGCAAATAGGATTGGAGGAGCTCAATTCACTTTGGATGGTAAAACATACAAATTGCCAGCTAATGATCATGGGAACACACTCCATGGTACGTGGCCAGAAGGGTTCGGTGATAACGTATGGAAAGTAGCAGTTCACAAGGATGATAGTCATGTAACATTTACCTACCACAGTTTTGATGGTGAACAAGGTTTTCCTGGAAAGCTTGACGTAAGTGTGACATACATGTTGCTTGAAAAGAACATATTGGGTGTGAAAATGACTGCCAAGCCAGTAAACAAACCCACACCAGTAAATCTAGCACAACATGCATACTGGAACCTAGGAGGCCACAACAGTGGTGACATTCTTAATCACACTGTTCAAATCTTTGGTTCATCCATCACACCGGTAGATGATAAACTCATCCCAACAGGCAAACTCGAATCCGTGAAGAACACGCCATATGATTTTCTTAAACCAAAACAAGTTGGAAGTCAAATTAATGACCTTCCTGGTTTATACGACATTAACTATGCAATTGACGTGAATGGTCAAAATCATTTAACCAAAGTTTGTATAGTGAAAGAACCTGTCTCAGGAAGGAAAATGGAGTTGTGGTCAAACCAAGTTGGATTGCAATACTATACTAGTGAATGTTGA
Protein sequence

>MsG0880046441.01.T01

MAKVSLLFCVLLGLLVHTYAHSHRSEKSEKIGFYELKKGSMRVNLTNYGASIVAVYVPDKHGKVADVVLGYDSIEQYETDGVYFGGLIGRVANRIGGAQFTLDGKTYKLPANDHGNTLHGTWPEGFGDNVWKVAVHKDDSHVTFTYHSFDGEQGFPGKLDVSVTYMLLEKNILGVKMTAKPVNKPTPVNLAQHAYWNLGGHNSGDILNHTVQIFGSSITPVDDKLIPTGKLESVKNTPYDFLKPKQVGSQINDLPGLYDINYAIDVNGQNHLTKVCIVKEPVSGRKMELWSNQVGLQYYTSEC*