Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046943.01.T01 | XP_003594812.2 | 97.549 | 204 | 5 | 0 | 2 | 205 | 206 | 409 | 6.72E-140 | 411 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046943.01.T01 | Q71VM4 | 86.275 | 204 | 28 | 0 | 2 | 205 | 205 | 408 | 7.64E-125 | 365 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046943.01.T01 | G7IMW8 | 97.549 | 204 | 5 | 0 | 2 | 205 | 206 | 409 | 3.21e-140 | 411 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0580024035.01 | MsG0880046943.01 | 0.803864 | 2.844685e-49 | 1.445290e-46 |
| MsG0580027745.01 | MsG0880046943.01 | 0.809140 | 2.192108e-50 | 1.276893e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046943.01.T01 | MTR_2g034900 | 97.549 | 204 | 5 | 0 | 2 | 205 | 206 | 409 | 8.13e-144 | 411 |
| MsG0880046943.01.T01 | MTR_2g034900 | 30.769 | 182 | 111 | 7 | 32 | 205 | 107 | 281 | 1.71e-14 | 71.6 |
| MsG0880046943.01.T01 | MTR_4g131510 | 84.314 | 204 | 32 | 0 | 2 | 205 | 129 | 332 | 5.24e-125 | 360 |
| MsG0880046943.01.T01 | MTR_4g131510 | 29.944 | 177 | 119 | 4 | 32 | 205 | 30 | 204 | 2.83e-14 | 70.9 |
| MsG0880046943.01.T01 | MTR_1g083810 | 85.294 | 204 | 30 | 0 | 2 | 205 | 207 | 410 | 1.57e-124 | 362 |
| MsG0880046943.01.T01 | MTR_1g083810 | 30.220 | 182 | 112 | 7 | 32 | 205 | 108 | 282 | 4.60e-14 | 70.5 |
| MsG0880046943.01.T01 | MTR_1g083810 | 26.627 | 169 | 120 | 4 | 41 | 206 | 76 | 243 | 3.18e-11 | 62.0 |
| MsG0880046943.01.T01 | MTR_8g027585 | 82.353 | 204 | 36 | 0 | 2 | 205 | 122 | 325 | 5.77e-120 | 348 |
| MsG0880046943.01.T01 | MTR_8g027585 | 25.541 | 231 | 87 | 3 | 59 | 205 | 53 | 282 | 2.04e-12 | 65.5 |
| MsG0880046943.01.T01 | MTR_7g112350 | 82.353 | 204 | 36 | 0 | 2 | 205 | 207 | 410 | 1.44e-118 | 347 |
| MsG0880046943.01.T01 | MTR_7g112350 | 32.418 | 182 | 108 | 7 | 32 | 205 | 108 | 282 | 5.04e-17 | 79.0 |
| MsG0880046943.01.T01 | MTR_4g133040 | 81.951 | 205 | 36 | 1 | 2 | 205 | 139 | 343 | 2.04e-117 | 343 |
| MsG0880046943.01.T01 | MTR_4g133040 | 25.989 | 177 | 127 | 2 | 32 | 205 | 40 | 215 | 1.52e-11 | 63.2 |
| MsG0880046943.01.T01 | MTR_4g121435 | 78.049 | 205 | 44 | 1 | 2 | 205 | 209 | 413 | 1.43e-113 | 334 |
| MsG0880046943.01.T01 | MTR_4g121435 | 29.213 | 178 | 119 | 6 | 32 | 205 | 110 | 284 | 6.52e-14 | 70.1 |
| MsG0880046943.01.T01 | MTR_4g121435 | 27.119 | 177 | 123 | 5 | 34 | 206 | 71 | 245 | 2.18e-11 | 62.8 |
| MsG0880046943.01.T01 | MTR_4g131000 | 79.512 | 205 | 41 | 1 | 1 | 205 | 127 | 330 | 4.36e-104 | 308 |
| MsG0880046943.01.T01 | MTR_4g131000 | 29.213 | 178 | 121 | 4 | 31 | 205 | 28 | 203 | 1.70e-11 | 62.8 |
| MsG0880046943.01.T01 | MTR_4g133030 | 76.585 | 205 | 47 | 1 | 2 | 205 | 126 | 330 | 8.46e-102 | 303 |
| MsG0880046943.01.T01 | MTR_4g133030 | 28.814 | 177 | 122 | 3 | 32 | 205 | 27 | 202 | 5.05e-12 | 64.3 |
| MsG0880046943.01.T01 | MTR_4g132980 | 73.171 | 205 | 38 | 1 | 2 | 206 | 117 | 304 | 2.91e-99 | 295 |
| MsG0880046943.01.T01 | MTR_1g053470 | 72.330 | 206 | 54 | 3 | 3 | 205 | 1 | 206 | 3.26e-99 | 290 |
| MsG0880046943.01.T01 | MTR_1g053470 | 72.330 | 206 | 54 | 3 | 3 | 205 | 1 | 206 | 7.97e-99 | 289 |
| MsG0880046943.01.T01 | MTR_1g053470 | 72.330 | 206 | 54 | 3 | 3 | 205 | 1 | 206 | 1.52e-97 | 288 |
| MsG0880046943.01.T01 | MTR_4g132980 | 72.539 | 193 | 36 | 1 | 14 | 206 | 1 | 176 | 1.36e-93 | 276 |
| MsG0880046943.01.T01 | MTR_4g127570 | 63.902 | 205 | 34 | 2 | 2 | 205 | 95 | 260 | 2.70e-74 | 231 |
| MsG0880046943.01.T01 | MTR_7g112150 | 48.148 | 189 | 93 | 5 | 19 | 205 | 242 | 427 | 6.58e-47 | 161 |
| MsG0880046943.01.T01 | MTR_7g113400 | 45.226 | 199 | 104 | 5 | 7 | 203 | 229 | 424 | 5.42e-44 | 152 |
| MsG0880046943.01.T01 | MTR_7g112160 | 44.615 | 195 | 103 | 5 | 13 | 205 | 236 | 427 | 4.59e-41 | 145 |
| MsG0880046943.01.T01 | MTR_4g013265 | 43.415 | 205 | 37 | 3 | 2 | 205 | 79 | 205 | 1.93e-40 | 140 |
| MsG0880046943.01.T01 | MTR_4g132960 | 76.344 | 93 | 22 | 0 | 113 | 205 | 3 | 95 | 3.55e-37 | 129 |
| MsG0880046943.01.T01 | MTR_4g132967 | 76.344 | 93 | 22 | 0 | 113 | 205 | 7 | 99 | 2.71e-36 | 126 |
| MsG0880046943.01.T01 | MTR_4g124270 | 46.324 | 136 | 45 | 4 | 41 | 176 | 15 | 122 | 2.85e-27 | 102 |
| MsG0880046943.01.T01 | MTR_1g066760 | 32.642 | 193 | 117 | 5 | 11 | 192 | 223 | 413 | 2.83e-22 | 94.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046943.01.T01 | AT3G06720 | 82.843 | 204 | 35 | 0 | 2 | 205 | 205 | 408 | 1.34e-120 | 352 |
| MsG0880046943.01.T01 | AT3G06720 | 32.418 | 182 | 108 | 7 | 32 | 205 | 106 | 280 | 4.05e-15 | 73.6 |
| MsG0880046943.01.T01 | AT3G06720 | 28.148 | 135 | 94 | 3 | 74 | 206 | 108 | 241 | 7.16e-11 | 61.2 |
| MsG0880046943.01.T01 | AT3G06720 | 82.843 | 204 | 35 | 0 | 2 | 205 | 205 | 408 | 1.34e-120 | 352 |
| MsG0880046943.01.T01 | AT3G06720 | 32.418 | 182 | 108 | 7 | 32 | 205 | 106 | 280 | 4.05e-15 | 73.6 |
| MsG0880046943.01.T01 | AT3G06720 | 28.148 | 135 | 94 | 3 | 74 | 206 | 108 | 241 | 7.16e-11 | 61.2 |
| MsG0880046943.01.T01 | AT4G16143 | 84.804 | 204 | 31 | 0 | 2 | 205 | 210 | 413 | 1.40e-118 | 347 |
| MsG0880046943.01.T01 | AT4G16143 | 32.967 | 182 | 107 | 7 | 32 | 205 | 111 | 285 | 2.05e-15 | 74.3 |
| MsG0880046943.01.T01 | AT4G16143 | 84.804 | 204 | 31 | 0 | 2 | 205 | 210 | 413 | 1.40e-118 | 347 |
| MsG0880046943.01.T01 | AT4G16143 | 32.967 | 182 | 107 | 7 | 32 | 205 | 111 | 285 | 2.05e-15 | 74.3 |
| MsG0880046943.01.T01 | AT1G09270 | 79.412 | 204 | 42 | 0 | 2 | 205 | 130 | 333 | 1.26e-113 | 332 |
| MsG0880046943.01.T01 | AT1G09270 | 26.587 | 252 | 98 | 4 | 32 | 196 | 31 | 282 | 8.20e-14 | 69.7 |
| MsG0880046943.01.T01 | AT1G09270 | 27.160 | 162 | 114 | 4 | 48 | 206 | 6 | 166 | 1.77e-11 | 62.8 |
| MsG0880046943.01.T01 | AT1G09270 | 79.412 | 204 | 42 | 0 | 2 | 205 | 212 | 415 | 3.25e-113 | 333 |
| MsG0880046943.01.T01 | AT1G09270 | 26.587 | 252 | 98 | 4 | 32 | 196 | 113 | 364 | 5.84e-14 | 70.1 |
| MsG0880046943.01.T01 | AT1G09270 | 26.316 | 171 | 122 | 4 | 39 | 206 | 79 | 248 | 4.02e-12 | 64.7 |
| MsG0880046943.01.T01 | AT1G09270 | 79.412 | 204 | 42 | 0 | 2 | 205 | 212 | 415 | 3.25e-113 | 333 |
| MsG0880046943.01.T01 | AT1G09270 | 26.587 | 252 | 98 | 4 | 32 | 196 | 113 | 364 | 5.84e-14 | 70.1 |
| MsG0880046943.01.T01 | AT1G09270 | 26.316 | 171 | 122 | 4 | 39 | 206 | 79 | 248 | 4.02e-12 | 64.7 |
| MsG0880046943.01.T01 | AT4G02150 | 76.238 | 202 | 48 | 0 | 2 | 203 | 208 | 409 | 6.17e-110 | 321 |
| MsG0880046943.01.T01 | AT4G02150 | 28.571 | 182 | 115 | 7 | 32 | 205 | 109 | 283 | 3.33e-12 | 65.1 |
| MsG0880046943.01.T01 | AT4G02150 | 75.490 | 204 | 50 | 0 | 2 | 205 | 208 | 411 | 1.73e-108 | 321 |
| MsG0880046943.01.T01 | AT4G02150 | 28.571 | 182 | 115 | 7 | 32 | 205 | 109 | 283 | 4.61e-12 | 64.7 |
| MsG0880046943.01.T01 | AT1G02690 | 74.020 | 204 | 53 | 0 | 2 | 205 | 209 | 412 | 4.20e-107 | 318 |
| MsG0880046943.01.T01 | AT1G02690 | 30.769 | 182 | 111 | 9 | 32 | 205 | 110 | 284 | 1.71e-11 | 63.2 |
| MsG0880046943.01.T01 | AT1G02690 | 73.659 | 205 | 53 | 1 | 2 | 205 | 209 | 413 | 2.95e-105 | 313 |
| MsG0880046943.01.T01 | AT1G02690 | 30.601 | 183 | 111 | 10 | 32 | 205 | 110 | 285 | 5.02e-11 | 61.6 |
| MsG0880046943.01.T01 | AT5G49310 | 65.196 | 204 | 71 | 0 | 2 | 205 | 203 | 406 | 2.17e-90 | 275 |
| MsG0880046943.01.T01 | AT5G49310 | 27.570 | 214 | 109 | 5 | 32 | 200 | 104 | 316 | 1.01e-11 | 63.5 |
| MsG0880046943.01.T01 | AT3G05720 | 63.725 | 204 | 74 | 0 | 2 | 205 | 193 | 396 | 8.07e-90 | 273 |
| MsG0880046943.01.T01 | AT3G05720 | 32.164 | 171 | 103 | 6 | 41 | 205 | 105 | 268 | 2.93e-14 | 71.2 |
| MsG0880046943.01.T01 | AT3G05720 | 63.725 | 204 | 74 | 0 | 2 | 205 | 193 | 396 | 8.07e-90 | 273 |
| MsG0880046943.01.T01 | AT3G05720 | 32.164 | 171 | 103 | 6 | 41 | 205 | 105 | 268 | 2.93e-14 | 71.2 |
| MsG0880046943.01.T01 | AT5G52000 | 56.923 | 195 | 84 | 0 | 11 | 205 | 142 | 336 | 1.86e-73 | 229 |
| MsG0880046943.01.T01 | AT5G49305 | 36.318 | 201 | 123 | 3 | 2 | 201 | 131 | 327 | 1.93e-30 | 115 |
| MsG0880046943.01.T01 | AT5G49305 | 36.318 | 201 | 123 | 3 | 2 | 201 | 131 | 327 | 1.93e-30 | 115 |
| MsG0880046943.01.T01 | AT5G49305 | 36.318 | 201 | 123 | 3 | 2 | 201 | 131 | 327 | 1.93e-30 | 115 |
| MsG0880046943.01.T01 | AT5G49305 | 36.318 | 201 | 123 | 3 | 2 | 201 | 131 | 327 | 1.93e-30 | 115 |
| MsG0880046943.01.T01 | AT5G49305 | 36.318 | 201 | 123 | 3 | 2 | 201 | 131 | 327 | 1.93e-30 | 115 |
| MsG0880046943.01.T01 | AT5G03070 | 29.319 | 191 | 126 | 3 | 11 | 192 | 223 | 413 | 4.49e-18 | 82.0 |
| MsG0880046943.01.T01 | AT1G32880 | 60.417 | 48 | 19 | 0 | 158 | 205 | 40 | 87 | 9.76e-12 | 61.6 |
Find 46 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCTTTGTCAGGCTATTAT+TGG | 0.250216 | 8:+80237957 | MsG0880046943.01.T01:intron |
| ATTTGCAGGTTACCTGTATC+TGG | 0.298491 | 8:-80238088 | None:intergenic |
| GCTTTGCCTGCTCATTCAAC+TGG | 0.326556 | 8:-80236825 | None:intergenic |
| TCTTGTGATTATGGGTCAAC+AGG | 0.349313 | 8:-80238007 | None:intergenic |
| GTATTAAGAAAGAAGCTTGC+TGG | 0.403332 | 8:+80238033 | MsG0880046943.01.T01:CDS |
| TTTCCCACCGTGCGAAGTGC+AGG | 0.425467 | 8:-80237290 | None:intergenic |
| TGTCAGGCTATTATTGGTCA+TGG | 0.426983 | 8:+80237963 | MsG0880046943.01.T01:intron |
| ACAGCAACTACCTGATCAAA+TGG | 0.433718 | 8:-80236910 | None:intergenic |
| CACATACTTGATTTGCTCAT+GGG | 0.461333 | 8:-80238647 | None:intergenic |
| AAAACCAAACGCTCAAAAGC+TGG | 0.476524 | 8:-80237026 | None:intergenic |
| AAGTCCTGACAGATGCATGC+TGG | 0.478035 | 8:+80237063 | MsG0880046943.01.T01:CDS |
| TCACATACTTGATTTGCTCA+TGG | 0.478259 | 8:-80238648 | None:intergenic |
| GCACTCTCCAATGCTACATC+TGG | 0.481318 | 8:+80238619 | MsG0880046943.01.T01:CDS |
| AGCCGGACTAATTGCTCCTC+TGG | 0.482618 | 8:+80238546 | MsG0880046943.01.T01:CDS |
| GTGCCCAGCATGCATCTGTC+AGG | 0.489359 | 8:-80237067 | None:intergenic |
| ACCTGATCAAATGGAGGTTG+TGG | 0.493907 | 8:-80236901 | None:intergenic |
| GCCACAACCTCCATTTGATC+AGG | 0.496284 | 8:+80236900 | MsG0880046943.01.T01:CDS |
| GCACTCTCTTATCTCTCTGA+TGG | 0.505911 | 8:+80237086 | MsG0880046943.01.T01:CDS |
| ATCCAAGCGGTGATTGAGGC+AGG | 0.508765 | 8:+80237122 | MsG0880046943.01.T01:CDS |
| ACGGTGGGAAATATTGTAAC+GGG | 0.515526 | 8:+80237302 | MsG0880046943.01.T01:CDS |
| ATCCCTGCACTTCGCACGGT+GGG | 0.519321 | 8:+80237287 | MsG0880046943.01.T01:CDS |
| ACTATATCAAACATTACAGC+TGG | 0.520999 | 8:+80238056 | MsG0880046943.01.T01:CDS |
| CACCTGCCTCAATCACCGCT+TGG | 0.530994 | 8:-80237124 | None:intergenic |
| GGGATCAGCACTGAAGGAGA+TGG | 0.533434 | 8:-80237269 | None:intergenic |
| CAAAATCCAAGCGGTGATTG+AGG | 0.535552 | 8:+80237118 | MsG0880046943.01.T01:CDS |
| AGTCCTGACAGATGCATGCT+GGG | 0.537551 | 8:+80237064 | MsG0880046943.01.T01:CDS |
| ATGTAGGCTGTTATTGAAGC+CGG | 0.538904 | 8:+80238529 | MsG0880046943.01.T01:intron |
| GCTGATCCCTGCACTTCGCA+CGG | 0.540455 | 8:+80237283 | MsG0880046943.01.T01:CDS |
| GGGAGATGATGCGCAGACTC+AGG | 0.546817 | 8:+80237322 | MsG0880046943.01.T01:CDS |
| GACCAGAGGAGCAATTAGTC+CGG | 0.547359 | 8:-80238548 | None:intergenic |
| CTTTGCCTGCTCATTCAACT+GGG | 0.551507 | 8:-80236824 | None:intergenic |
| GGCAGGTGTATGTGGCAGAC+TGG | 0.553415 | 8:+80237139 | MsG0880046943.01.T01:CDS |
| TGGAAACAAAGACCAGATAC+AGG | 0.554927 | 8:+80238076 | MsG0880046943.01.T01:CDS |
| GTTAACCCAGTTGAATGAGC+AGG | 0.556500 | 8:+80236819 | MsG0880046943.01.T01:CDS |
| GTCAACAGGCTCAAAAGACA+TGG | 0.559325 | 8:-80237993 | None:intergenic |
| AGTGCAGGGATCAGCACTGA+AGG | 0.566296 | 8:-80237275 | None:intergenic |
| GTGATTGAGGCAGGTGTATG+TGG | 0.576179 | 8:+80237131 | MsG0880046943.01.T01:CDS |
| GGTACCGCCAGATGTAGCAT+TGG | 0.592074 | 8:-80238626 | None:intergenic |
| CACGGTGGGAAATATTGTAA+CGG | 0.599546 | 8:+80237301 | MsG0880046943.01.T01:CDS |
| CAATGCTGAGAAATGTCACA+TGG | 0.600941 | 8:+80236851 | MsG0880046943.01.T01:CDS |
| TTCCCACCGTGCGAAGTGCA+GGG | 0.602360 | 8:-80237289 | None:intergenic |
| GATCCCTGCACTTCGCACGG+TGG | 0.621361 | 8:+80237286 | MsG0880046943.01.T01:CDS |
| CTCTCCAATGCTACATCTGG+CGG | 0.629473 | 8:+80238622 | MsG0880046943.01.T01:CDS |
| TCAACAGGCTCAAAAGACAT+GGG | 0.682804 | 8:-80237992 | None:intergenic |
| GCAACTACCTGATCAAATGG+AGG | 0.705454 | 8:-80236907 | None:intergenic |
| AACAAATGACAAAATCCAAG+CGG | 0.716535 | 8:+80237109 | MsG0880046943.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTACTAAATTTTAATA+TGG | - | Chr8:80237422-80237441 | None:intergenic | 10.0% |
| !!! | ATTCAAATTTGATGTTTTTT+GGG | + | Chr8:80238192-80238211 | MsG0880046943.01.T01:intron | 15.0% |
| !!! | TATTCAAATTTGATGTTTTT+TGG | + | Chr8:80238191-80238210 | MsG0880046943.01.T01:intron | 15.0% |
| !! | AATTGAGTTATCATAAACAT+GGG | - | Chr8:80238114-80238133 | None:intergenic | 20.0% |
| !! | AGTAATGTATGTAATTGAAA+TGG | - | Chr8:80238385-80238404 | None:intergenic | 20.0% |
| !! | ATATATCTACAATACTACAA+TGG | - | Chr8:80238259-80238278 | None:intergenic | 20.0% |
| !! | TTTATGTATTTACAACAGAA+TGG | - | Chr8:80238348-80238367 | None:intergenic | 20.0% |
| !! | TTTGCAAGTAATTAGATTTA+GGG | + | Chr8:80237559-80237578 | MsG0880046943.01.T01:intron | 20.0% |
| !!! | AATACTTTTCTTGTGATTAT+GGG | - | Chr8:80238018-80238037 | None:intergenic | 20.0% |
| !!! | AATTTATATGCATGTTTTGT+AGG | + | Chr8:80237243-80237262 | MsG0880046943.01.T01:intron | 20.0% |
| !!! | TAATACTTTTCTTGTGATTA+TGG | - | Chr8:80238019-80238038 | None:intergenic | 20.0% |
| !!! | TAATGATAATGTAACTTTGA+TGG | + | Chr8:80236984-80237003 | MsG0880046943.01.T01:intron | 20.0% |
| !!! | TTCTTTTTTAATGTCAAACT+CGG | - | Chr8:80238590-80238609 | None:intergenic | 20.0% |
| !!! | TTTTGCAAGTAATTAGATTT+AGG | + | Chr8:80237558-80237577 | MsG0880046943.01.T01:intron | 20.0% |
| ! | AATCCAACAATTACTCTAAT+TGG | - | Chr8:80238301-80238320 | None:intergenic | 25.0% |
| ! | CAATTGAGTTATCATAAACA+TGG | - | Chr8:80238115-80238134 | None:intergenic | 25.0% |
| ! | GTTGTAAATACATAAAAGAC+AGG | + | Chr8:80238352-80238371 | MsG0880046943.01.T01:intron | 25.0% |
| ! | TACAACAGAATGGAAAATAA+GGG | - | Chr8:80238338-80238357 | None:intergenic | 25.0% |
| ! | TGACCAAAGAAATAATAGTA+GGG | - | Chr8:80237733-80237752 | None:intergenic | 25.0% |
| ! | TTACAACAGAATGGAAAATA+AGG | - | Chr8:80238339-80238358 | None:intergenic | 25.0% |
| ! | TTGACCAAAGAAATAATAGT+AGG | - | Chr8:80237734-80237753 | None:intergenic | 25.0% |
| !! | AAACACATACTTTAGCATTT+TGG | - | Chr8:80237591-80237610 | None:intergenic | 25.0% |
| !! | CTAAATCAGTACTTTATTTC+AGG | - | Chr8:80237466-80237485 | None:intergenic | 25.0% |
| !!! | CTACGAATCATGTTTTTTTA+GGG | + | Chr8:80237646-80237665 | MsG0880046943.01.T01:intron | 25.0% |
| !!! | GTTAGCTTATTTTCTGAAAA+AGG | + | Chr8:80238484-80238503 | MsG0880046943.01.T01:intron | 25.0% |
| !!! | TACGAATCATGTTTTTTTAG+GGG | + | Chr8:80237647-80237666 | MsG0880046943.01.T01:intron | 25.0% |
| AAATACATAAAAGACAGGTG+TGG | + | Chr8:80238357-80238376 | MsG0880046943.01.T01:intron | 30.0% | |
| AACAAATGACAAAATCCAAG+CGG | + | Chr8:80237109-80237128 | MsG0880046943.01.T01:CDS | 30.0% | |
| ACACCAATTAGAGTAATTGT+TGG | + | Chr8:80238295-80238314 | MsG0880046943.01.T01:intron | 30.0% | |
| ACATTAAAAAAGAAGCTGCA+TGG | + | Chr8:80238596-80238615 | MsG0880046943.01.T01:CDS | 30.0% | |
| ACGAGAAGAAACTAGATTAA+TGG | - | Chr8:80237884-80237903 | None:intergenic | 30.0% | |
| ACTATATCAAACATTACAGC+TGG | + | Chr8:80238056-80238075 | MsG0880046943.01.T01:CDS | 30.0% | |
| AGAGTAATTGTTGGATTGTT+AGG | + | Chr8:80238304-80238323 | MsG0880046943.01.T01:intron | 30.0% | |
| ATCATAACTGAACATGCAAA+CGG | + | Chr8:80236945-80236964 | MsG0880046943.01.T01:intron | 30.0% | |
| CAAAATCAGATAACTCTCAA+AGG | - | Chr8:80237932-80237951 | None:intergenic | 30.0% | |
| CATTAAAAAAGAAGCTGCAT+GGG | + | Chr8:80238597-80238616 | MsG0880046943.01.T01:CDS | 30.0% | |
| CCTAAAAAAACATGATTCGT+AGG | - | Chr8:80237648-80237667 | None:intergenic | 30.0% | |
| CTTGTGAATTGTTCAACAAT+TGG | + | Chr8:80237359-80237378 | MsG0880046943.01.T01:intron | 30.0% | |
| GAACCATTTATGTATGATGT+AGG | + | Chr8:80238513-80238532 | MsG0880046943.01.T01:intron | 30.0% | |
| TCTTTGGTCAATTATCCTAA+TGG | + | Chr8:80237743-80237762 | MsG0880046943.01.T01:intron | 30.0% | |
| TGTAGATATATTTACTTCCC+AGG | + | Chr8:80238268-80238287 | MsG0880046943.01.T01:intron | 30.0% | |
| ! | ATAATGTAACTTTGATGGAC+AGG | + | Chr8:80236989-80237008 | MsG0880046943.01.T01:intron | 30.0% |
| ! | GAGAGTTATCTGATTTTGTT+GGG | + | Chr8:80237934-80237953 | MsG0880046943.01.T01:intron | 30.0% |
| ! | GATCCCTACTATTATTTCTT+TGG | + | Chr8:80237727-80237746 | MsG0880046943.01.T01:intron | 30.0% |
| ! | TGAGAGTTATCTGATTTTGT+TGG | + | Chr8:80237933-80237952 | MsG0880046943.01.T01:intron | 30.0% |
| !!! | ACGAATCATGTTTTTTTAGG+GGG | + | Chr8:80237648-80237667 | MsG0880046943.01.T01:intron | 30.0% |
| !!! | CCTACGAATCATGTTTTTTT+AGG | + | Chr8:80237645-80237664 | MsG0880046943.01.T01:intron | 30.0% |
| !!! | TAGTGTTGTGTTGGTAATTT+TGG | + | Chr8:80237483-80237502 | MsG0880046943.01.T01:intron | 30.0% |
| !!! | TGCCATTTTGTTTTCTGTTT+GGG | + | Chr8:80238418-80238437 | MsG0880046943.01.T01:intron | 30.0% |
| !!! | TTGCCATTTTGTTTTCTGTT+TGG | + | Chr8:80238417-80238436 | MsG0880046943.01.T01:intron | 30.0% |
| ACCCCAAACAGAAAACAAAA+TGG | - | Chr8:80238423-80238442 | None:intergenic | 35.0% | |
| ACTCTAATTGGTGTATAACC+TGG | - | Chr8:80238289-80238308 | None:intergenic | 35.0% | |
| ACTCTTTGTCAGGCTATTAT+TGG | + | Chr8:80237957-80237976 | MsG0880046943.01.T01:intron | 35.0% | |
| AGACTCAGGTAATGTCATAA+TGG | + | Chr8:80237336-80237355 | MsG0880046943.01.T01:intron | 35.0% | |
| AGCAATGACTATCAAGTGTA+TGG | - | Chr8:80237704-80237723 | None:intergenic | 35.0% | |
| ATCATAAACATGGGATTTGC+AGG | - | Chr8:80238105-80238124 | None:intergenic | 35.0% | |
| CAATAACTGCAAAAGATCAC+TGG | - | Chr8:80237208-80237227 | None:intergenic | 35.0% | |
| CAGCCTACATCATACATAAA+TGG | - | Chr8:80238519-80238538 | None:intergenic | 35.0% | |
| CTCTAATTGGTGTATAACCT+GGG | - | Chr8:80238288-80238307 | None:intergenic | 35.0% | |
| GAAGAATCGTTACTCACAAA+AGG | - | Chr8:80237172-80237191 | None:intergenic | 35.0% | |
| GTATTAAGAAAGAAGCTTGC+TGG | + | Chr8:80238033-80238052 | MsG0880046943.01.T01:CDS | 35.0% | |
| GTGAGCATAACTCATTCATA+GGG | - | Chr8:80237834-80237853 | None:intergenic | 35.0% | |
| TCATAACTGAACATGCAAAC+GGG | + | Chr8:80236946-80236965 | MsG0880046943.01.T01:intron | 35.0% | |
| ! | ACTTTGTCAAACTTTTGCAG+GGG | + | Chr8:80236874-80236893 | MsG0880046943.01.T01:CDS | 35.0% |
| ! | GACTTTGTCAAACTTTTGCA+GGG | + | Chr8:80236873-80236892 | MsG0880046943.01.T01:CDS | 35.0% |
| ! | GTATCACATGCTGTTTAACA+TGG | + | Chr8:80238214-80238233 | MsG0880046943.01.T01:intron | 35.0% |
| ! | TACAATGGTTGTTATTGCAC+CGG | - | Chr8:80238244-80238263 | None:intergenic | 35.0% |
| !! | CACATACTTGATTTGCTCAT+GGG | - | Chr8:80238650-80238669 | None:intergenic | 35.0% |
| !! | GTACTGATTTAGTGTTGTGT+TGG | + | Chr8:80237474-80237493 | MsG0880046943.01.T01:intron | 35.0% |
| !! | TCACATACTTGATTTGCTCA+TGG | - | Chr8:80238651-80238670 | None:intergenic | 35.0% |
| !! | TTTTGAAGAAGATTGACCAG+AGG | - | Chr8:80238565-80238584 | None:intergenic | 35.0% |
| !!! | AATCATGTTTTTTTAGGGGG+TGG | + | Chr8:80237651-80237670 | MsG0880046943.01.T01:intron | 35.0% |
| !!! | ATCATGTTTTTTTAGGGGGT+GGG | + | Chr8:80237652-80237671 | MsG0880046943.01.T01:intron | 35.0% |
| !!! | GCCATTTTGTTTTCTGTTTG+GGG | + | Chr8:80238419-80238438 | MsG0880046943.01.T01:intron | 35.0% |
| AAAACCAAACGCTCAAAAGC+TGG | - | Chr8:80237029-80237048 | None:intergenic | 40.0% | |
| ACAGCAACTACCTGATCAAA+TGG | - | Chr8:80236913-80236932 | None:intergenic | 40.0% | |
| ACGGTGGGAAATATTGTAAC+GGG | + | Chr8:80237302-80237321 | MsG0880046943.01.T01:CDS | 40.0% | |
| ATAGGGACATCACAATATGC+AGG | - | Chr8:80237817-80237836 | None:intergenic | 40.0% | |
| ATGAATGAGTTATGCTCACG+TGG | + | Chr8:80237835-80237854 | MsG0880046943.01.T01:intron | 40.0% | |
| ATGTAGGCTGTTATTGAAGC+CGG | + | Chr8:80238529-80238548 | MsG0880046943.01.T01:intron | 40.0% | |
| ATTTGCAGGTTACCTGTATC+TGG | - | Chr8:80238091-80238110 | None:intergenic | 40.0% | |
| CAATGCTGAGAAATGTCACA+TGG | + | Chr8:80236851-80236870 | MsG0880046943.01.T01:CDS | 40.0% | |
| CACGGTGGGAAATATTGTAA+CGG | + | Chr8:80237301-80237320 | MsG0880046943.01.T01:CDS | 40.0% | |
| CGTGAGCATAACTCATTCAT+AGG | - | Chr8:80237835-80237854 | None:intergenic | 40.0% | |
| TAGGGACATCACAATATGCA+GGG | - | Chr8:80237816-80237835 | None:intergenic | 40.0% | |
| TCAACAGGCTCAAAAGACAT+GGG | - | Chr8:80237995-80238014 | None:intergenic | 40.0% | |
| TCTTGTGATTATGGGTCAAC+AGG | - | Chr8:80238010-80238029 | None:intergenic | 40.0% | |
| TGGAAACAAAGACCAGATAC+AGG | + | Chr8:80238076-80238095 | MsG0880046943.01.T01:CDS | 40.0% | |
| TGGTCAATTATCCTAATGGC+TGG | + | Chr8:80237747-80237766 | MsG0880046943.01.T01:intron | 40.0% | |
| TGTCAGGCTATTATTGGTCA+TGG | + | Chr8:80237963-80237982 | MsG0880046943.01.T01:intron | 40.0% | |
| ! | GGACTTTGTCAAACTTTTGC+AGG | + | Chr8:80236872-80236891 | MsG0880046943.01.T01:CDS | 40.0% |
| ! | TGCTGTTTAACATGGAGATC+CGG | + | Chr8:80238222-80238241 | MsG0880046943.01.T01:intron | 40.0% |
| ! | TTTTGTTGGGACTCTTTGTC+AGG | + | Chr8:80237947-80237966 | MsG0880046943.01.T01:intron | 40.0% |
| !! | TGAATTTCTAGCCAGCCATT+AGG | - | Chr8:80237761-80237780 | None:intergenic | 40.0% |
| !!! | TCATGTTTTTTTAGGGGGTG+GGG | + | Chr8:80237653-80237672 | MsG0880046943.01.T01:intron | 40.0% |
| ACCCCTTGAGATGAGTAAGT+GGG | + | Chr8:80237780-80237799 | MsG0880046943.01.T01:intron | 45.0% | |
| ACCTGATCAAATGGAGGTTG+TGG | - | Chr8:80236904-80236923 | None:intergenic | 45.0% | |
| AGGGACATCACAATATGCAG+GGG | - | Chr8:80237815-80237834 | None:intergenic | 45.0% | |
| CAAAATCCAAGCGGTGATTG+AGG | + | Chr8:80237118-80237137 | MsG0880046943.01.T01:CDS | 45.0% | |
| CTTTGCCTGCTCATTCAACT+GGG | - | Chr8:80236827-80236846 | None:intergenic | 45.0% | |
| GCAACTACCTGATCAAATGG+AGG | - | Chr8:80236910-80236929 | None:intergenic | 45.0% | |
| GCACTCTCTTATCTCTCTGA+TGG | + | Chr8:80237086-80237105 | MsG0880046943.01.T01:CDS | 45.0% | |
| GTCAACAGGCTCAAAAGACA+TGG | - | Chr8:80237996-80238015 | None:intergenic | 45.0% | |
| GTTAACCCAGTTGAATGAGC+AGG | + | Chr8:80236819-80236838 | MsG0880046943.01.T01:CDS | 45.0% | |
| TCCCCACTTACTCATCTCAA+GGG | - | Chr8:80237785-80237804 | None:intergenic | 45.0% | |
| TGTATGGTTGCATACTTCCC+AGG | - | Chr8:80237688-80237707 | None:intergenic | 45.0% | |
| TTCCCCACTTACTCATCTCA+AGG | - | Chr8:80237786-80237805 | None:intergenic | 45.0% | |
| ! | ACTTCCAGCTTTTGAGCGTT+TGG | + | Chr8:80237022-80237041 | MsG0880046943.01.T01:CDS | 45.0% |
| ! | GTAACTTTGATGGACAGGTG+AGG | + | Chr8:80236994-80237013 | MsG0880046943.01.T01:intron | 45.0% |
| ! | TTTAGGGGGTGGGGTAATTT+TGG | + | Chr8:80237662-80237681 | MsG0880046943.01.T01:intron | 45.0% |
| !! | AAATTTAATTAGAAATAATT+AGG | - | Chr8:80237391-80237410 | None:intergenic | 5.0% |
| AAGTCCTGACAGATGCATGC+TGG | + | Chr8:80237063-80237082 | MsG0880046943.01.T01:CDS | 50.0% | |
| ACATCACAATATGCAGGGGC+CGG | - | Chr8:80237811-80237830 | None:intergenic | 50.0% | |
| AGTCCTGACAGATGCATGCT+GGG | + | Chr8:80237064-80237083 | MsG0880046943.01.T01:CDS | 50.0% | |
| CACCCCTTGAGATGAGTAAG+TGG | + | Chr8:80237779-80237798 | MsG0880046943.01.T01:intron | 50.0% | |
| CCCCACTTACTCATCTCAAG+GGG | - | Chr8:80237784-80237803 | None:intergenic | 50.0% | |
| CCCCTTGAGATGAGTAAGTG+GGG | + | Chr8:80237781-80237800 | MsG0880046943.01.T01:intron | 50.0% | |
| CTCTCCAATGCTACATCTGG+CGG | + | Chr8:80238622-80238641 | MsG0880046943.01.T01:CDS | 50.0% | |
| GACCAGAGGAGCAATTAGTC+CGG | - | Chr8:80238551-80238570 | None:intergenic | 50.0% | |
| GCACTCTCCAATGCTACATC+TGG | + | Chr8:80238619-80238638 | MsG0880046943.01.T01:CDS | 50.0% | |
| GCCACAACCTCCATTTGATC+AGG | + | Chr8:80236900-80236919 | MsG0880046943.01.T01:CDS | 50.0% | |
| GCTTTGCCTGCTCATTCAAC+TGG | - | Chr8:80236828-80236847 | None:intergenic | 50.0% | |
| GTGATTGAGGCAGGTGTATG+TGG | + | Chr8:80237131-80237150 | MsG0880046943.01.T01:CDS | 50.0% | |
| AGCCGGACTAATTGCTCCTC+TGG | + | Chr8:80238546-80238565 | MsG0880046943.01.T01:CDS | 55.0% | |
| ATCACAATATGCAGGGGCCG+GGG | - | Chr8:80237809-80237828 | None:intergenic | 55.0% | |
| ATCCAAGCGGTGATTGAGGC+AGG | + | Chr8:80237122-80237141 | MsG0880046943.01.T01:CDS | 55.0% | |
| CATCACAATATGCAGGGGCC+GGG | - | Chr8:80237810-80237829 | None:intergenic | 55.0% | |
| GATGAGTAAGTGGGGAACCC+CGG | + | Chr8:80237789-80237808 | MsG0880046943.01.T01:intron | 55.0% | |
| GGTACCGCCAGATGTAGCAT+TGG | - | Chr8:80238629-80238648 | None:intergenic | 55.0% | |
| ! | AGTGCAGGGATCAGCACTGA+AGG | - | Chr8:80237278-80237297 | None:intergenic | 55.0% |
| ! | GGGATCAGCACTGAAGGAGA+TGG | - | Chr8:80237272-80237291 | None:intergenic | 55.0% |
| !! | GGGTGGGGTAATTTTGGCCT+GGG | + | Chr8:80237668-80237687 | MsG0880046943.01.T01:intron | 55.0% |
| ATCCCTGCACTTCGCACGGT+GGG | + | Chr8:80237287-80237306 | MsG0880046943.01.T01:CDS | 60.0% | |
| CACCTGCCTCAATCACCGCT+TGG | - | Chr8:80237127-80237146 | None:intergenic | 60.0% | |
| GCTGATCCCTGCACTTCGCA+CGG | + | Chr8:80237283-80237302 | MsG0880046943.01.T01:CDS | 60.0% | |
| GGCAGGTGTATGTGGCAGAC+TGG | + | Chr8:80237139-80237158 | MsG0880046943.01.T01:CDS | 60.0% | |
| GGGAGATGATGCGCAGACTC+AGG | + | Chr8:80237322-80237341 | MsG0880046943.01.T01:CDS | 60.0% | |
| GTGCCCAGCATGCATCTGTC+AGG | - | Chr8:80237070-80237089 | None:intergenic | 60.0% | |
| TTCCCACCGTGCGAAGTGCA+GGG | - | Chr8:80237292-80237311 | None:intergenic | 60.0% | |
| TTTCCCACCGTGCGAAGTGC+AGG | - | Chr8:80237293-80237312 | None:intergenic | 60.0% | |
| !! | GGGGTGGGGTAATTTTGGCC+TGG | + | Chr8:80237667-80237686 | MsG0880046943.01.T01:intron | 60.0% |
| GATCCCTGCACTTCGCACGG+TGG | + | Chr8:80237286-80237305 | MsG0880046943.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 80236814 | 80238675 | 80236814 | ID=MsG0880046943.01;Name=MsG0880046943.01 |
| Chr8 | mRNA | 80236814 | 80238675 | 80236814 | ID=MsG0880046943.01.T01;Parent=MsG0880046943.01;Name=MsG0880046943.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0.75|0.4|1|1|1|5|0|206 |
| Chr8 | exon | 80236814 | 80236921 | 80236814 | ID=MsG0880046943.01.T01:exon:34545;Parent=MsG0880046943.01.T01 |
| Chr8 | exon | 80237011 | 80237174 | 80237011 | ID=MsG0880046943.01.T01:exon:34546;Parent=MsG0880046943.01.T01 |
| Chr8 | exon | 80237265 | 80237343 | 80237265 | ID=MsG0880046943.01.T01:exon:34547;Parent=MsG0880046943.01.T01 |
| Chr8 | exon | 80237969 | 80238097 | 80237969 | ID=MsG0880046943.01.T01:exon:34548;Parent=MsG0880046943.01.T01 |
| Chr8 | exon | 80238535 | 80238675 | 80238535 | ID=MsG0880046943.01.T01:exon:34549;Parent=MsG0880046943.01.T01 |
| Chr8 | CDS | 80236814 | 80236921 | 80236814 | ID=MsG0880046943.01.T01:cds;Parent=MsG0880046943.01.T01 |
| Chr8 | CDS | 80237011 | 80237174 | 80237011 | ID=MsG0880046943.01.T01:cds;Parent=MsG0880046943.01.T01 |
| Chr8 | CDS | 80237265 | 80237343 | 80237265 | ID=MsG0880046943.01.T01:cds;Parent=MsG0880046943.01.T01 |
| Chr8 | CDS | 80237969 | 80238097 | 80237969 | ID=MsG0880046943.01.T01:cds;Parent=MsG0880046943.01.T01 |
| Chr8 | CDS | 80238535 | 80238675 | 80238535 | ID=MsG0880046943.01.T01:cds;Parent=MsG0880046943.01.T01 |
| Gene Sequence |
| Protein sequence |
