AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047040.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047040.01.T01 MTR_4g119770 81.395 215 31 3 160 374 124 329 4.14e-125 363
MsG0880047040.01.T01 MTR_4g119770 26.744 172 110 2 203 374 59 214 1.64e-16 80.1
MsG0880047040.01.T01 MTR_2g436930 68.750 224 60 4 151 373 23 237 5.01e-110 322
MsG0880047040.01.T01 MTR_2g436930 68.750 224 60 4 151 373 113 327 5.12e-109 322
MsG0880047040.01.T01 MTR_2g436930 28.070 171 107 2 204 374 59 213 6.03e-16 78.6
MsG0880047040.01.T01 MTR_4g119770 71.918 146 32 3 160 305 124 260 2.46e-69 219
MsG0880047040.01.T01 MTR_4g119770 26.744 172 110 2 203 374 59 214 7.28e-17 80.1
MsG0880047040.01.T01 MTR_5g009500 32.353 170 110 2 203 370 172 338 2.12e-25 105
MsG0880047040.01.T01 MTR_5g009500 28.846 156 92 4 219 370 84 224 1.11e-13 72.0
MsG0880047040.01.T01 MTR_8g027975 32.558 172 109 2 203 370 185 353 1.72e-24 103
MsG0880047040.01.T01 MTR_8g027975 26.923 156 95 5 219 370 97 237 4.45e-12 67.0
MsG0880047040.01.T01 MTR_4g114320 33.133 166 91 3 206 370 248 394 1.46e-22 98.6
MsG0880047040.01.T01 MTR_4g114320 26.797 153 92 2 214 366 161 293 5.10e-12 67.0
MsG0880047040.01.T01 MTR_3g107510 32.121 165 95 2 206 370 246 393 2.90e-22 97.4
MsG0880047040.01.T01 MTR_3g107510 25.490 153 94 2 214 366 159 291 6.55e-12 67.0
MsG0880047040.01.T01 MTR_1g012030 31.515 165 96 2 206 370 263 410 1.55e-21 95.9
MsG0880047040.01.T01 MTR_1g012030 26.797 153 92 2 214 366 176 308 3.68e-13 70.9
MsG0880047040.01.T01 MTR_4g005330 30.994 171 100 2 200 370 135 287 1.63e-21 94.0
MsG0880047040.01.T01 MTR_4g005330 25.882 170 103 2 209 368 32 188 2.08e-12 67.4
MsG0880047040.01.T01 MTR_3g104600 30.303 165 99 2 206 370 181 329 2.02e-21 94.4
MsG0880047040.01.T01 MTR_3g104600 25.316 158 103 4 216 366 77 226 8.38e-11 63.2
MsG0880047040.01.T01 MTR_4g005330 31.361 169 98 2 202 370 203 353 3.97e-21 94.0
MsG0880047040.01.T01 MTR_4g005330 25.882 170 103 2 209 368 98 254 3.17e-12 67.4
MsG0880047040.01.T01 MTR_7g064980 32.934 167 94 5 207 372 167 316 9.10e-21 92.0
MsG0880047040.01.T01 MTR_3g098460 28.659 164 101 2 208 371 334 481 2.00e-18 87.0
MsG0880047040.01.T01 MTR_3g438050 50.588 85 36 2 30 114 203 281 2.18e-17 83.2
MsG0880047040.01.T01 MTR_7g084400 28.659 164 96 3 208 371 344 486 6.38e-17 82.4
MsG0880047040.01.T01 MTR_8g096050 29.268 164 100 3 208 371 356 503 1.07e-16 81.6
MsG0880047040.01.T01 MTR_6g091800 27.957 186 109 4 191 370 164 330 4.61e-16 79.0
MsG0880047040.01.T01 MTR_1g087840 27.976 168 105 3 207 374 156 307 4.95e-16 78.6
MsG0880047040.01.T01 MTR_6g091800 28.743 167 99 3 205 370 159 306 6.12e-16 78.2
MsG0880047040.01.T01 MTR_6g091800 26.144 153 103 2 217 367 62 206 4.19e-11 63.9
MsG0880047040.01.T01 MTR_8g098240 28.889 180 100 4 194 364 421 581 2.41e-15 77.8
MsG0880047040.01.T01 MTR_6g034515 28.947 152 97 3 214 365 196 336 4.40e-15 76.3
MsG0880047040.01.T01 MTR_7g068340 25.731 171 100 3 199 366 206 352 6.17e-15 75.9
MsG0880047040.01.T01 MTR_8g030930 67.308 52 17 0 30 81 206 257 1.10e-14 75.1
MsG0880047040.01.T01 MTR_7g109135 25.904 166 107 3 207 372 60 209 1.37e-14 72.8
MsG0880047040.01.T01 MTR_6g091910 29.341 167 98 4 205 370 61 208 1.63e-14 72.4
MsG0880047040.01.T01 MTR_8g076760 28.070 171 108 5 205 371 147 306 2.22e-14 73.6
MsG0880047040.01.T01 MTR_8g076760 30.625 160 93 5 207 366 51 192 1.02e-12 68.6
MsG0880047040.01.T01 MTR_7g109135 25.904 166 107 3 207 372 81 230 2.50e-14 72.4
MsG0880047040.01.T01 MTR_6g034145 27.545 167 101 3 205 370 105 252 2.83e-14 72.4
MsG0880047040.01.T01 MTR_6g034145 25.625 160 109 2 210 367 1 152 3.50e-12 66.2
MsG0880047040.01.T01 MTR_8g066975 30.201 149 86 3 222 370 166 296 2.84e-14 73.2
MsG0880047040.01.T01 MTR_7g109135 25.904 166 107 3 207 372 159 308 6.24e-14 72.4
MsG0880047040.01.T01 MTR_7g109135 25.904 166 107 3 207 372 152 301 6.75e-14 72.0
MsG0880047040.01.T01 MTR_5g081150 30.769 143 81 5 233 374 200 325 1.45e-13 71.2
MsG0880047040.01.T01 MTR_3g025800 30.864 162 100 2 207 368 180 329 1.49e-13 71.6
MsG0880047040.01.T01 MTR_6g092210 28.743 167 99 4 205 370 99 246 1.49e-13 70.5
MsG0880047040.01.T01 MTR_6g033280 25.143 175 105 5 200 370 87 239 2.09e-13 71.2
MsG0880047040.01.T01 MTR_5g030530 30.201 149 86 3 222 370 166 296 2.70e-13 70.1
MsG0880047040.01.T01 MTR_5g055410 24.390 164 111 5 207 370 155 305 4.68e-13 70.1
MsG0880047040.01.T01 MTR_5g055410 28.302 159 97 3 212 370 61 202 2.50e-11 64.7
MsG0880047040.01.T01 MTR_1g097890 29.299 157 85 3 217 370 171 304 6.47e-13 69.3
MsG0880047040.01.T01 MTR_3g104500 25.269 186 119 4 185 370 156 321 6.54e-13 69.3
MsG0880047040.01.T01 MTR_8g090210 26.061 165 93 5 214 364 242 391 8.50e-13 69.7
MsG0880047040.01.T01 MTR_6g091800 26.144 153 103 2 217 367 62 206 2.36e-11 63.9
MsG0880047040.01.T01 MTR_5g097860 44.068 59 33 0 28 86 201 259 3.05e-11 64.3
MsG0880047040.01.T01 MTR_6g091800 26.144 153 103 2 217 367 62 206 3.22e-11 63.9
MsG0880047040.01.T01 MTR_5g063430 44.737 76 41 1 8 82 175 250 5.52e-11 63.5
MsG0880047040.01.T01 MTR_6g091800 26.901 171 100 4 191 355 164 315 6.11e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047040.01.T01 AT5G48970 59.336 241 85 5 138 374 36 267 4.07e-93 280
MsG0880047040.01.T01 AT5G48970 29.341 167 98 3 210 374 1 149 2.40e-15 75.9
MsG0880047040.01.T01 AT5G48970 59.336 241 85 5 138 374 107 338 1.82e-92 281
MsG0880047040.01.T01 AT5G48970 29.412 170 100 3 207 374 69 220 1.13e-15 77.8
MsG0880047040.01.T01 AT3G21390 62.385 218 67 5 160 372 125 332 2.39e-89 273
MsG0880047040.01.T01 AT3G21390 24.852 169 110 3 201 369 59 210 2.08e-12 68.2
MsG0880047040.01.T01 AT3G21390 62.385 218 67 5 160 372 147 354 3.05e-89 273
MsG0880047040.01.T01 AT3G21390 24.852 169 110 3 201 369 81 232 2.04e-12 68.2
MsG0880047040.01.T01 AT4G01100 32.000 175 106 4 203 370 126 294 1.90e-25 105
MsG0880047040.01.T01 AT4G01100 32.000 175 106 4 203 370 176 344 4.90e-25 104
MsG0880047040.01.T01 AT4G01100 32.000 175 106 4 203 370 190 358 6.62e-25 104
MsG0880047040.01.T01 AT1G14560 30.909 165 98 3 207 370 73 222 1.51e-23 98.2
MsG0880047040.01.T01 AT1G14560 30.723 166 99 3 207 371 171 321 5.78e-23 98.6
MsG0880047040.01.T01 AT1G14560 27.044 159 104 3 213 367 66 216 7.84e-12 66.2
MsG0880047040.01.T01 AT3G20240 30.058 173 103 2 202 374 189 343 1.15e-19 89.4
MsG0880047040.01.T01 AT3G20240 26.220 164 98 2 213 366 88 238 1.76e-14 74.3
MsG0880047040.01.T01 AT4G32400 30.303 165 98 2 206 370 238 385 1.46e-19 89.7
MsG0880047040.01.T01 AT3G53940 29.762 168 100 5 207 373 213 363 2.89e-18 85.5
MsG0880047040.01.T01 AT2G37890 29.762 168 100 6 207 373 185 335 8.64e-18 84.0
MsG0880047040.01.T01 AT2G37890 29.878 164 92 5 208 366 84 229 1.69e-11 65.1
MsG0880047040.01.T01 AT1G14560 31.429 140 80 3 207 345 171 295 1.44e-17 82.8
MsG0880047040.01.T01 AT1G14560 26.875 160 105 3 212 367 65 216 7.97e-12 65.9
MsG0880047040.01.T01 AT5G51050 28.659 164 96 2 208 371 354 496 5.76e-17 82.8
MsG0880047040.01.T01 AT4G11440 32.597 181 98 6 194 364 431 597 3.11e-16 80.9
MsG0880047040.01.T01 AT4G11440 32.597 181 98 6 194 364 431 597 3.11e-16 80.9
MsG0880047040.01.T01 AT1G25380 26.250 160 104 3 207 366 157 302 3.40e-16 79.7
MsG0880047040.01.T01 AT1G25380 28.834 163 97 4 212 374 65 208 3.18e-11 64.7
MsG0880047040.01.T01 AT1G25380 26.250 160 104 3 207 366 157 302 3.40e-16 79.7
MsG0880047040.01.T01 AT1G25380 28.834 163 97 4 212 374 65 208 3.18e-11 64.7
MsG0880047040.01.T01 AT3G55640 27.673 159 99 4 216 374 187 329 6.98e-15 75.5
MsG0880047040.01.T01 AT3G55640 27.673 159 99 4 216 374 187 329 6.98e-15 75.5
MsG0880047040.01.T01 AT5G46800 30.201 149 86 3 222 370 169 299 8.84e-15 74.7
MsG0880047040.01.T01 AT5G46800 30.201 149 86 3 222 370 169 299 8.84e-15 74.7
MsG0880047040.01.T01 AT5G46800 30.201 149 86 3 222 370 169 299 8.84e-15 74.7
MsG0880047040.01.T01 AT4G26180 29.012 162 98 3 206 367 162 306 1.44e-14 74.3
MsG0880047040.01.T01 AT4G26180 28.571 154 100 3 216 367 63 208 2.46e-12 67.8
MsG0880047040.01.T01 AT5G64970 28.743 167 90 5 212 364 141 292 1.70e-14 73.9
MsG0880047040.01.T01 AT5G64970 28.916 166 89 5 213 364 266 416 3.28e-14 73.9
MsG0880047040.01.T01 AT2G47490 26.220 164 105 3 207 370 153 300 6.09e-14 72.4
MsG0880047040.01.T01 AT5G61810 27.607 163 98 4 208 370 190 332 3.17e-13 70.5
MsG0880047040.01.T01 AT2G15450 42.857 105 54 3 8 109 187 288 4.46e-13 70.5
MsG0880047040.01.T01 AT5G07320 25.000 152 93 2 216 367 343 473 4.66e-13 70.9
MsG0880047040.01.T01 AT5G61810 27.607 163 98 4 208 370 333 475 5.00e-13 70.5
MsG0880047040.01.T01 AT4G13760 43.299 97 51 2 8 103 187 280 1.20e-12 69.3
MsG0880047040.01.T01 AT2G40310 42.268 97 52 2 8 103 187 280 1.37e-12 68.9
MsG0880047040.01.T01 AT2G15470 41.667 96 54 1 8 103 187 280 1.41e-12 68.9
MsG0880047040.01.T01 AT4G26180 28.571 154 100 3 216 367 63 208 2.13e-12 67.4
MsG0880047040.01.T01 AT4G26180 30.000 140 81 3 206 345 162 284 9.77e-12 65.5
MsG0880047040.01.T01 AT2G15460 42.268 97 52 2 8 103 187 280 2.67e-12 68.2
MsG0880047040.01.T01 AT1G43100 52.778 72 32 1 32 103 211 280 3.19e-12 68.2
MsG0880047040.01.T01 AT5G66380 24.848 165 115 3 207 371 146 301 3.63e-12 67.0
MsG0880047040.01.T01 AT1G43080 41.667 96 54 1 8 103 187 280 3.66e-12 67.8
MsG0880047040.01.T01 AT1G43090 52.778 72 32 1 32 103 211 280 3.68e-12 67.8
MsG0880047040.01.T01 AT3G51870 23.445 209 130 5 167 372 181 362 5.79e-12 67.0
MsG0880047040.01.T01 AT1G79900 28.859 149 86 4 216 364 149 277 6.78e-12 66.2
MsG0880047040.01.T01 AT5G01500 23.188 207 129 5 167 370 209 388 1.01e-11 66.2
MsG0880047040.01.T01 AT2G26620 50.685 73 32 2 32 103 211 280 1.28e-11 65.9
MsG0880047040.01.T01 AT3G48850 24.631 203 121 6 172 370 73 247 4.33e-11 64.3
MsG0880047040.01.T01 AT1G78400 45.882 85 40 1 30 114 212 290 5.16e-11 64.3
MsG0880047040.01.T01 AT1G74240 31.098 164 94 3 207 368 140 286 6.50e-11 63.2
MsG0880047040.01.T01 AT2G43880 37.079 89 50 1 30 118 206 288 9.56e-11 62.8

Find 106 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACAGATGGTATCAAAAT+AGG 0.192930 8:-81259267 MsG0880047040.01.T01:CDS
CTCAACTCGAGCTCCGTATC+TGG 0.223970 8:+81256300 None:intergenic
TGTTGTCAAGAAAAGGTTTC+AGG 0.235633 8:-81256471 MsG0880047040.01.T01:intron
CCTTATGCAGGACTACAATT+TGG 0.244873 8:-81257639 MsG0880047040.01.T01:CDS
AAACAGATGGTATCAAAATA+GGG 0.263026 8:-81259266 MsG0880047040.01.T01:CDS
TGGTATTGGAATATCTATTA+TGG 0.289740 8:+81256582 None:intergenic
ATAGAAATTGATTCCTTCAT+AGG 0.315540 8:-81256059 MsG0880047040.01.T01:three_prime_UTR
CTTGACCGTCTTCCATCTTA+AGG 0.327470 8:+81255969 None:intergenic
TCTTGACACCATTTGTGTTT+AGG 0.328957 8:-81258588 MsG0880047040.01.T01:CDS
ATTATCTTCTCCGGTGGTAT+TGG 0.329338 8:+81256568 None:intergenic
ATGCCGTGCAACGGATATTT+CGG 0.338299 8:-81256252 MsG0880047040.01.T01:CDS
TCATATGTTCTTTGTGGTCC+TGG 0.349651 8:-81259154 MsG0880047040.01.T01:CDS
TCCATTGAGCAAAACTTTCA+AGG 0.351598 8:+81258857 None:intergenic
AGGGAGCTCAATTGCTGAAA+TGG 0.360079 8:+81258612 None:intergenic
TCTCTGGTACTAGGAATGTT+TGG 0.371531 8:-81259180 MsG0880047040.01.T01:CDS
TTCCTTTGTGGATTGGCGGC+TGG 0.382943 8:-81256527 MsG0880047040.01.T01:CDS
GATATTTCGGTCAGAGGGTT+GGG 0.388813 8:-81256239 MsG0880047040.01.T01:CDS
GGTGCAGCTTTAACAGTTGA+TGG 0.397088 8:+81256193 None:intergenic
GACCATTGCTTCTACTACTC+AGG 0.400806 8:-81258812 MsG0880047040.01.T01:CDS
ACGAATGCTGACCTCATGTT+AGG 0.406524 8:+81257732 None:intergenic
TGCCTTGAAATCCTCGAGTC+TGG 0.406854 8:+81257700 None:intergenic
CTCTTGATGTTGTCAAGAAA+AGG 0.413353 8:-81256478 MsG0880047040.01.T01:CDS
GGGAGCTCAATTGCTGAAAT+GGG 0.413743 8:+81258613 None:intergenic
AACACAAATGGTGTCAAGAT+AGG 0.419441 8:+81258592 None:intergenic
AAGATTGTACTTCCTTAAGA+TGG 0.425910 8:-81255981 MsG0880047040.01.T01:three_prime_UTR
CCAACGCTTAAATGTATCAT+AGG 0.426408 8:+81257614 None:intergenic
AAGAGGATGACAGACAAGTT+TGG 0.434931 8:+81256496 None:intergenic
CTATGATACATTTAAGCGTT+GGG 0.435132 8:-81257613 MsG0880047040.01.T01:CDS
TGGATTTCATATGTTCTTTG+TGG 0.437474 8:-81259160 MsG0880047040.01.T01:CDS
TTGCTATAATCTCTGGTACT+AGG 0.444152 8:-81259189 MsG0880047040.01.T01:CDS
TTGCTATGATCTCTGGTACT+AGG 0.448215 8:+81258679 None:intergenic
CTCGTCTATACATGTGGATG+TGG 0.448252 8:-81259794 None:intergenic
GACTGCATTGCTATGATCTC+TGG 0.449574 8:+81258672 None:intergenic
GGATTTCAAGGCATGTATGC+TGG 0.453348 8:-81257690 MsG0880047040.01.T01:CDS
ACTAGAAATATTATCTTCTC+CGG 0.461740 8:+81256559 None:intergenic
GTTCTTTGTGGTCCTGGTCA+TGG 0.467728 8:-81259148 MsG0880047040.01.T01:CDS
TTCAAAATCCATGAAGCAAA+AGG 0.470610 8:+81255916 None:intergenic
TGTGGTCCTGGTCATGGAAT+CGG 0.471775 8:-81259142 MsG0880047040.01.T01:CDS
TACATTTAAGCGTTGGGCCT+CGG 0.473485 8:-81257607 MsG0880047040.01.T01:intron
CATAAGGTATAATCTCAACT+AGG 0.475275 8:+81257655 None:intergenic
GCTTTCTTCCTATCCTATGA+AGG 0.478072 8:+81256046 None:intergenic
ATCCAGACTCGAGGATTTCA+AGG 0.478793 8:-81257702 MsG0880047040.01.T01:CDS
GGTATAATCTCAACTAGGGT+TGG 0.483081 8:+81257660 None:intergenic
TCTCTGGTACTAGGAATGTA+TGG 0.483724 8:+81258688 None:intergenic
CCAAATTGTAGTCCTGCATA+AGG 0.485370 8:+81257639 None:intergenic
GGATATTTCGGTCAGAGGGT+TGG 0.489851 8:-81256240 MsG0880047040.01.T01:CDS
GGAAGCCTTGTTAATAGTGA+TGG 0.500705 8:+81258753 None:intergenic
ACACAAATGGTGTCAAGATA+GGG 0.508723 8:+81258593 None:intergenic
GACTGCATTGCTATAATCTC+TGG 0.509046 8:-81259196 MsG0880047040.01.T01:CDS
TTTCGGTCAGAGGGTTGGGC+TGG 0.510368 8:-81256235 MsG0880047040.01.T01:CDS
CACAAGTGTGAACGTTGCAG+CGG 0.513254 8:-81259224 MsG0880047040.01.T01:CDS
CCTATGATACATTTAAGCGT+TGG 0.514362 8:-81257614 MsG0880047040.01.T01:CDS
CTGGAAATTCCAGGCGTTGG+TGG 0.515827 8:-81259297 MsG0880047040.01.T01:intron
CCTTGTCGTGGATTTAGTAT+CGG 0.518000 8:+81258732 None:intergenic
TGTGTTTAGGCTATCACCGC+GGG 0.518618 8:-81258575 MsG0880047040.01.T01:intron
AAAGCCTTGGTAAGAATGAT+GGG 0.518738 8:-81259114 MsG0880047040.01.T01:CDS
GTTGAGATTATACCTTATGC+AGG 0.519205 8:-81257651 MsG0880047040.01.T01:CDS
GGGTTGGGCTGGACTATACA+AGG 0.524099 8:-81256224 MsG0880047040.01.T01:CDS
AATTGATTCCTTCATAGGAT+AGG 0.524675 8:-81256054 MsG0880047040.01.T01:three_prime_UTR
GAAGCCTTGTTAATAGTGAT+GGG 0.525330 8:+81258754 None:intergenic
TCAACTCGAGCTCCGTATCT+GGG 0.526503 8:+81256301 None:intergenic
TATAGATCGAAGGGCTTCAA+AGG 0.531796 8:-81256327 MsG0880047040.01.T01:intron
GAAAGCCTTGGTAAGAATGA+TGG 0.532544 8:-81259115 MsG0880047040.01.T01:CDS
CTTCAAAGGCATCCCAGATA+CGG 0.537449 8:-81256313 MsG0880047040.01.T01:CDS
CTTCCCCATCACTATTAACA+AGG 0.548110 8:-81258758 MsG0880047040.01.T01:CDS
CATATGAAACAGTATCGGAT+TGG 0.552135 8:-81256147 MsG0880047040.01.T01:CDS
ACTGTTAAAGCTGCACCTGC+TGG 0.552533 8:-81256187 MsG0880047040.01.T01:CDS
GGTGATAGCCTAAACACAAA+TGG 0.553837 8:+81258580 None:intergenic
TGGTCTTAAAACTAAAACAT+GGG 0.564322 8:+81258830 None:intergenic
ACAAGTGTGAACATTGCAAC+TGG 0.565140 8:+81258645 None:intergenic
ACAAGTGTGAACGTTGCAGC+GGG 0.574220 8:-81259223 MsG0880047040.01.T01:CDS
ATGGTCTTAAAACTAAAACA+TGG 0.575287 8:+81258829 None:intergenic
GGAATCGGTGTTGAAAGCCT+TGG 0.575574 8:-81259127 MsG0880047040.01.T01:CDS
ACGAATGTCACAGCACCAGC+AGG 0.575907 8:+81256172 None:intergenic
GCAACGGATATTTCGGTCAG+AGG 0.579354 8:-81256245 MsG0880047040.01.T01:CDS
GTGTTGTGTGGTCCTTGTCG+TGG 0.581516 8:+81258720 None:intergenic
TACTTCCTTAAGATGGAAGA+CGG 0.581724 8:-81255974 MsG0880047040.01.T01:three_prime_UTR
ACCATTGCTTCTACTACTCA+GGG 0.584853 8:-81258811 MsG0880047040.01.T01:CDS
AACAGATGGTATCAAAATAG+GGG 0.585062 8:-81259265 MsG0880047040.01.T01:CDS
CGTAGCATATGAAACAGTAT+CGG 0.587575 8:-81256152 MsG0880047040.01.T01:CDS
CTTCCCCATCATTCTTACCA+AGG 0.589311 8:+81259110 None:intergenic
CTGTTTACTATATAGATCGA+AGG 0.590068 8:-81256337 MsG0880047040.01.T01:intron
ACAAGGACCACACAACACAT+TGG 0.595140 8:-81258715 MsG0880047040.01.T01:CDS
AATAGATATTCCAATACCAC+CGG 0.603547 8:-81256578 MsG0880047040.01.T01:CDS
ATAAGGTATAATCTCAACTA+GGG 0.605046 8:+81257656 None:intergenic
ACATGTATGATGCCGTGCAA+CGG 0.606148 8:-81256261 MsG0880047040.01.T01:CDS
TGTTTACTATATAGATCGAA+GGG 0.606797 8:-81256336 MsG0880047040.01.T01:intron
TCAACACCGATTCCATGACC+AGG 0.613296 8:+81259136 None:intergenic
CAACGGATATTTCGGTCAGA+GGG 0.615122 8:-81256244 MsG0880047040.01.T01:CDS
ACCCTGAGTAGTAGAAGCAA+TGG 0.620080 8:+81258810 None:intergenic
TGGATTTCCAATGTGTTGTG+TGG 0.629012 8:+81258708 None:intergenic
TCACTGAACTTGTTGTCCAG+CGG 0.633784 8:-81259761 MsG0880047040.01.T01:intron
AGAAATATTATCTTCTCCGG+TGG 0.634847 8:+81256562 None:intergenic
TTTAGGTATATCCTAACATG+AGG 0.647212 8:-81257743 MsG0880047040.01.T01:intron
TGACCGAAATATCCGTTGCA+CGG 0.652591 8:+81256249 None:intergenic
TCGTCTATACATGTGGATGT+GGG 0.659378 8:-81259793 None:intergenic
GTCGATATCATCCAGACTCG+AGG 0.663438 8:-81257711 MsG0880047040.01.T01:CDS
TAGGATAGGAAGAAAGCATG+AGG 0.664761 8:-81256040 MsG0880047040.01.T01:three_prime_UTR
TTCCAGCCGCCAATCCACAA+AGG 0.666179 8:+81256525 None:intergenic
CCGATACTAAATCCACGACA+AGG 0.673947 8:-81258732 MsG0880047040.01.T01:CDS
GGAGCTCAATTGCTGAAATG+GGG 0.677809 8:+81258614 None:intergenic
AAGCCTTGTTAATAGTGATG+GGG 0.678227 8:+81258755 None:intergenic
TTGTGTTTAGGCTATCACCG+CGG 0.701312 8:-81258576 MsG0880047040.01.T01:CDS
AAGCCTTGGTAAGAATGATG+GGG 0.721717 8:-81259113 MsG0880047040.01.T01:CDS
ATGTTGAAAACATAGATACG+AGG 0.745722 8:+81258781 None:intergenic
GGTTGGGCTGGACTATACAA+GGG 0.749417 8:-81256223 MsG0880047040.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGTTTTATATTCAAAAAA+AGG - Chr8:81258676-81258695 MsG0880047040.01.T01:CDS 10.0%
!! AATATCTCATTATTATTAGT+TGG - Chr8:81258151-81258170 MsG0880047040.01.T01:intron 15.0%
!! ATAAGTTAGAAACAAAATTA+TGG + Chr8:81258986-81259005 None:intergenic 15.0%
!! ATAGCATATTAATCATATTA+TGG - Chr8:81258547-81258566 MsG0880047040.01.T01:intron 15.0%
!! ATATATACTCTATCAATATT+TGG - Chr8:81258797-81258816 MsG0880047040.01.T01:CDS 15.0%
!! TCTTTAATTCTTTACTAATA+AGG - Chr8:81257626-81257645 MsG0880047040.01.T01:CDS 15.0%
!!! TACAAATATATTATTTTCCT+TGG - Chr8:81257385-81257404 MsG0880047040.01.T01:intron 15.0%
!!! TGTAATATCTTTTGTATTAT+TGG - Chr8:81256276-81256295 MsG0880047040.01.T01:CDS 15.0%
!! AACCATATCAATGTAAAAAT+GGG - Chr8:81259343-81259362 MsG0880047040.01.T01:intron 20.0%
!! ACAAGATATATTGTATTTAC+TGG + Chr8:81257297-81257316 None:intergenic 20.0%
!! ACAATTGAAATATGAAAAAG+CGG + Chr8:81258650-81258669 None:intergenic 20.0%
!! ACTTATGTGAAATATGAAAT+TGG - Chr8:81259000-81259019 MsG0880047040.01.T01:intron 20.0%
!! CTAAATTTGTAGATGATTAA+CGG + Chr8:81256086-81256105 None:intergenic 20.0%
!! GGAAAAATAATATCAATTCA+AGG + Chr8:81259599-81259618 None:intergenic 20.0%
!! TAAATTTGTAGATGATTAAC+GGG + Chr8:81256085-81256104 None:intergenic 20.0%
!! TAACCATATCAATGTAAAAA+TGG - Chr8:81259342-81259361 MsG0880047040.01.T01:intron 20.0%
!! TAATGAGATATTAAATAGAG+AGG + Chr8:81258143-81258162 None:intergenic 20.0%
!!! ATGCTATTTATAGAAAAGTT+GGG + Chr8:81258534-81258553 None:intergenic 20.0%
!!! ATGTTAAATGTTGCATTTTT+TGG - Chr8:81256207-81256226 MsG0880047040.01.T01:CDS 20.0%
!!! GCTAAATTTATTTTGATTAG+TGG - Chr8:81259701-81259720 MsG0880047040.01.T01:intron 20.0%
!!! TATGCTATTTATAGAAAAGT+TGG + Chr8:81258535-81258554 None:intergenic 20.0%
!!! TCCATTAGAAATATTTCTAA+TGG - Chr8:81256029-81256048 MsG0880047040.01.T01:three_prime_UTR 20.0%
!!! TCCATTAGAAATATTTCTAA+TGG + Chr8:81256048-81256029 None:intergenic 20.0%
!!! TTTTGTTTAGCAAGATATAT+TGG - Chr8:81256245-81256264 MsG0880047040.01.T01:CDS 20.0%
!!! TTTTTATGTCTTCTAAAACA+AGG - Chr8:81259300-81259319 MsG0880047040.01.T01:intron 20.0%
! AAAACAGATGGTATCAAAAT+AGG - Chr8:81256446-81256465 MsG0880047040.01.T01:intron 25.0%
! AAACAGATGGTATCAAAATA+GGG - Chr8:81256447-81256466 MsG0880047040.01.T01:intron 25.0%
! AAATTTGTAGATGATTAACG+GGG + Chr8:81256084-81256103 None:intergenic 25.0%
! ACTAGAAATATTATCTTCTC+CGG + Chr8:81259157-81259176 None:intergenic 25.0%
! ATAAGGTATAATCTCAACTA+GGG + Chr8:81258060-81258079 None:intergenic 25.0%
! ATTTAACAATACAACAATCG+TGG + Chr8:81257694-81257713 None:intergenic 25.0%
! CAATGGCATTTCAATATATT+TGG + Chr8:81257202-81257221 None:intergenic 25.0%
! CAATTGAAATATGAAAAAGC+GGG + Chr8:81258649-81258668 None:intergenic 25.0%
! CATAATTTCCTATATAACTC+AGG + Chr8:81257803-81257822 None:intergenic 25.0%
! CATTTCAATATATTTGGTTG+TGG + Chr8:81257196-81257215 None:intergenic 25.0%
! CGTTAATCATCTACAAATTT+AGG - Chr8:81256084-81256103 MsG0880047040.01.T01:three_prime_UTR 25.0%
! TGTTTACTATATAGATCGAA+GGG - Chr8:81259377-81259396 MsG0880047040.01.T01:intron 25.0%
! TTTAAAAAATCGTCGAAATG+AGG + Chr8:81259620-81259639 None:intergenic 25.0%
!! AAAACTCTTGTTTATCTACA+TGG + Chr8:81258883-81258902 None:intergenic 25.0%
!! AAACCTGATTTTTACAAAAC+TGG - Chr8:81256397-81256416 MsG0880047040.01.T01:intron 25.0%
!! AAGTTTGACTTTATCACAAA+TGG + Chr8:81257259-81257278 None:intergenic 25.0%
!! ATAGAAATTGATTCCTTCAT+AGG - Chr8:81259654-81259673 MsG0880047040.01.T01:intron 25.0%
!! ATGGTCTTAAAACTAAAACA+TGG + Chr8:81256887-81256906 None:intergenic 25.0%
!! TGCTATTTATAGAAAAGTTG+GGG + Chr8:81258533-81258552 None:intergenic 25.0%
!! TGGTATTGGAATATCTATTA+TGG + Chr8:81259134-81259153 None:intergenic 25.0%
!! TGGTCTTAAAACTAAAACAT+GGG + Chr8:81256886-81256905 None:intergenic 25.0%
!! TGTGTCATCATTTTAAATGT+TGG - Chr8:81258297-81258316 MsG0880047040.01.T01:intron 25.0%
!! TTAACATTTTGTGCAAAGAA+AGG - Chr8:81256127-81256146 MsG0880047040.01.T01:exon 25.0%
!! TTATATGTTGTAGTTTGTGA+GGG + Chr8:81257543-81257562 None:intergenic 25.0%
!! TTATTGTCATTTAAAGCCAA+TGG + Chr8:81258445-81258464 None:intergenic 25.0%
!!! ATTGTATTTACTGGTTTCAT+CGG + Chr8:81257288-81257307 None:intergenic 25.0%
!!! ATTTTGATACCATCTGTTTT+TGG + Chr8:81256446-81256465 None:intergenic 25.0%
!!! CTTTTGTATTATTGGTTCAT+CGG - Chr8:81256284-81256303 MsG0880047040.01.T01:CDS 25.0%
!!! TGGAAATACTAATCTTGTTT+TGG - Chr8:81257894-81257913 MsG0880047040.01.T01:intron 25.0%
!!! TTTCCAGTTTTGTAAAAATC+AGG + Chr8:81256403-81256422 None:intergenic 25.0%
!!! TTTTGATACCATCTGTTTTT+GGG + Chr8:81256445-81256464 None:intergenic 25.0%
AAAAAGCAGGCAAGAATAAA+TGG + Chr8:81258381-81258400 None:intergenic 30.0%
AAAAGCAGGCAAGAATAAAT+GGG + Chr8:81258380-81258399 None:intergenic 30.0%
AAACCATCACCAGAAATATA+AGG + Chr8:81258766-81258785 None:intergenic 30.0%
AAATATTGATCCTTTGCAAC+TGG - Chr8:81257710-81257729 MsG0880047040.01.T01:CDS 30.0%
AACAGATGGTATCAAAATAG+GGG - Chr8:81256448-81256467 MsG0880047040.01.T01:intron 30.0%
AAGATAGATGATGATTGATG+AGG - Chr8:81257457-81257476 MsG0880047040.01.T01:intron 30.0%
AAGATTGTACTTCCTTAAGA+TGG - Chr8:81259732-81259751 MsG0880047040.01.T01:intron 30.0%
AATAGATATTCCAATACCAC+CGG - Chr8:81259135-81259154 MsG0880047040.01.T01:CDS 30.0%
AATCTATGTACAGAGTTCAA+CGG + Chr8:81258421-81258440 None:intergenic 30.0%
AATTTGTAGATGATTAACGG+GGG + Chr8:81256083-81256102 None:intergenic 30.0%
ACATTCAGTTGCACAAATAA+TGG - Chr8:81256638-81256657 MsG0880047040.01.T01:intron 30.0%
AGATAGATGATGATTGATGA+GGG - Chr8:81257458-81257477 MsG0880047040.01.T01:intron 30.0%
ATGTTGAAAACATAGATACG+AGG + Chr8:81256935-81256954 None:intergenic 30.0%
ATTCAATTAACAGCAGACAA+TGG + Chr8:81257219-81257238 None:intergenic 30.0%
CATAAGGTATAATCTCAACT+AGG + Chr8:81258061-81258080 None:intergenic 30.0%
CTATGATACATTTAAGCGTT+GGG - Chr8:81258100-81258119 MsG0880047040.01.T01:intron 30.0%
CTATTTATAGAAAAGTTGGG+GGG + Chr8:81258531-81258550 None:intergenic 30.0%
CTGTTTACTATATAGATCGA+AGG - Chr8:81259376-81259395 MsG0880047040.01.T01:intron 30.0%
GAGATTTACATGGATGATAT+GGG + Chr8:81258721-81258740 None:intergenic 30.0%
GCCTACAATTTCAAACAATA+CGG + Chr8:81259105-81259124 None:intergenic 30.0%
GCTATTTATAGAAAAGTTGG+GGG + Chr8:81258532-81258551 None:intergenic 30.0%
GTACATGTTATAGTTAGTGA+GGG - Chr8:81255978-81255997 MsG0880047040.01.T01:three_prime_UTR 30.0%
GTGAGAAAAAACATAGTAGA+AGG + Chr8:81256173-81256192 None:intergenic 30.0%
GTTAATTAATGAGTAACCGT+GGG + Chr8:81256112-81256131 None:intergenic 30.0%
GTTAGGATATACCTAAATGA+TGG + Chr8:81257967-81257986 None:intergenic 30.0%
TCGCTAAGTACTAATCTTAA+AGG + Chr8:81256800-81256819 None:intergenic 30.0%
TGAGATTTACATGGATGATA+TGG + Chr8:81258722-81258741 None:intergenic 30.0%
TGGATTTCATATGTTCTTTG+TGG - Chr8:81256553-81256572 MsG0880047040.01.T01:CDS 30.0%
TGTTAATTAATGAGTAACCG+TGG + Chr8:81256113-81256132 None:intergenic 30.0%
TTAATCAAAGAGTAAGCGTT+GGG - Chr8:81257429-81257448 MsG0880047040.01.T01:intron 30.0%
TTTACAAAACTGGAAATTCC+AGG - Chr8:81256407-81256426 MsG0880047040.01.T01:intron 30.0%
TTTAGGTATATCCTAACATG+AGG - Chr8:81257970-81257989 MsG0880047040.01.T01:intron 30.0%
! AATTGATTCCTTCATAGGAT+AGG - Chr8:81259659-81259678 MsG0880047040.01.T01:intron 30.0%
! ATTGTTTGAAATTGTAGGCT+TGG - Chr8:81259106-81259125 MsG0880047040.01.T01:CDS 30.0%
! CACATATTTTGCCATCATTT+AGG - Chr8:81257953-81257972 MsG0880047040.01.T01:intron 30.0%
! CTTATATGTTGTAGTTTGTG+AGG + Chr8:81257544-81257563 None:intergenic 30.0%
! TCCGTATTGTTTGAAATTGT+AGG - Chr8:81259101-81259120 MsG0880047040.01.T01:CDS 30.0%
!! ACAATACGGATTAGATAAAC+TGG + Chr8:81259091-81259110 None:intergenic 30.0%
!! ATCTTTGGTTATTTTGTTGG+GGG + Chr8:81258825-81258844 None:intergenic 30.0%
!! GACCCATTTTTACATTGATA+TGG + Chr8:81259348-81259367 None:intergenic 30.0%
!! GATCTTTGGTTATTTTGTTG+GGG + Chr8:81258826-81258845 None:intergenic 30.0%
!! GCAGCTCTAGTAAATTTTTA+TGG - Chr8:81258221-81258240 MsG0880047040.01.T01:intron 30.0%
!! GGATCTTTGGTTATTTTGTT+GGG + Chr8:81258827-81258846 None:intergenic 30.0%
!! TCAAAAAAAGGTATCCTGAT+GGG - Chr8:81258688-81258707 MsG0880047040.01.T01:CDS 30.0%
!! TTCAAAAAAAGGTATCCTGA+TGG - Chr8:81258687-81258706 MsG0880047040.01.T01:CDS 30.0%
!!! TCTACTATGTTTTTTCTCAC+AGG - Chr8:81256173-81256192 MsG0880047040.01.T01:CDS 30.0%
!!! TTTATTCTTGCCTGCTTTTT+AGG - Chr8:81258381-81258400 MsG0880047040.01.T01:intron 30.0%
!!! TTTGATACCATCTGTTTTTG+GGG + Chr8:81256444-81256463 None:intergenic 30.0%
AAAGCCTTGGTAAGAATGAT+GGG - Chr8:81256599-81256618 MsG0880047040.01.T01:intron 35.0%
AACATCCCATAGATAAGTAG+TGG + Chr8:81256010-81256029 None:intergenic 35.0%
AACTGCCACTACTTATCTAT+GGG - Chr8:81256002-81256021 MsG0880047040.01.T01:three_prime_UTR 35.0%
ACATGTTGACAGATTCATGA+TGG - Chr8:81257566-81257585 MsG0880047040.01.T01:intron 35.0%
ACCACAACACCTTATATTTC+TGG - Chr8:81258754-81258773 MsG0880047040.01.T01:CDS 35.0%
AGAAATATTATCTTCTCCGG+TGG + Chr8:81259154-81259173 None:intergenic 35.0%
AGACTGCTTAAGACTTTACA+TGG - Chr8:81258245-81258264 MsG0880047040.01.T01:intron 35.0%
AGCAATAGCAATCCTTAAAG+AGG + Chr8:81257753-81257772 None:intergenic 35.0%
AGCCTAATAACCTAAAAAGC+AGG + Chr8:81258394-81258413 None:intergenic 35.0%
ATCATGAATCTGTCAACATG+TGG + Chr8:81257567-81257586 None:intergenic 35.0%
ATGCTATCAGATTGTTGTAG+CGG - Chr8:81258573-81258592 MsG0880047040.01.T01:intron 35.0%
ATTGCTGAACAGAAACATCA+TGG - Chr8:81257767-81257786 MsG0880047040.01.T01:intron 35.0%
CCAACGCTTAAATGTATCAT+AGG + Chr8:81258102-81258121 None:intergenic 35.0%
CCTATGATACATTTAAGCGT+TGG - Chr8:81258099-81258118 MsG0880047040.01.T01:intron 35.0%
CGTAGCATATGAAACAGTAT+CGG - Chr8:81259561-81259580 MsG0880047040.01.T01:intron 35.0%
CTCTGTACATAGATTACCAT+TGG - Chr8:81258426-81258445 MsG0880047040.01.T01:intron 35.0%
CTCTTGATGTTGTCAAGAAA+AGG - Chr8:81259235-81259254 MsG0880047040.01.T01:CDS 35.0%
CTTAATCAAAGAGTAAGCGT+TGG - Chr8:81257428-81257447 MsG0880047040.01.T01:intron 35.0%
GCAAAACAGAAGAGCTTAAA+GGG + Chr8:81257868-81257887 None:intergenic 35.0%
GGTACATGTTATAGTTAGTG+AGG - Chr8:81255977-81255996 MsG0880047040.01.T01:three_prime_UTR 35.0%
GTTGAGATTATACCTTATGC+AGG - Chr8:81258062-81258081 MsG0880047040.01.T01:intron 35.0%
GTTGCACAAATAATGGTCTT+AGG - Chr8:81256645-81256664 MsG0880047040.01.T01:intron 35.0%
TAACTGCCACTACTTATCTA+TGG - Chr8:81256001-81256020 MsG0880047040.01.T01:three_prime_UTR 35.0%
TAATTATGTCCTGCATGCAA+TGG - Chr8:81258177-81258196 MsG0880047040.01.T01:intron 35.0%
TACTTCCTTAAGATGGAAGA+CGG - Chr8:81259739-81259758 MsG0880047040.01.T01:intron 35.0%
TCCATTGAGCAAAACTTTCA+AGG + Chr8:81256859-81256878 None:intergenic 35.0%
TCTTGACACCATTTGTGTTT+AGG - Chr8:81257125-81257144 MsG0880047040.01.T01:intron 35.0%
TGCTTAAGACTTTACATGGT+AGG - Chr8:81258249-81258268 MsG0880047040.01.T01:intron 35.0%
TGTTGTCAAGAAAAGGTTTC+AGG - Chr8:81259242-81259261 MsG0880047040.01.T01:CDS 35.0%
TTCCTATATAACTCAGGAGT+AGG + Chr8:81257797-81257816 None:intergenic 35.0%
TTGCTATAATCTCTGGTACT+AGG - Chr8:81256524-81256543 MsG0880047040.01.T01:CDS 35.0%
TTGCTTGCTTGAGATTTACA+TGG + Chr8:81258731-81258750 None:intergenic 35.0%
TTGTGCAAAGAAAACTACCA+AGG + Chr8:81257405-81257424 None:intergenic 35.0%
! AACACAAATGGTGTCAAGAT+AGG + Chr8:81257124-81257143 None:intergenic 35.0%
! ACACAAATGGTGTCAAGATA+GGG + Chr8:81257123-81257142 None:intergenic 35.0%
! ACCTTGAAAGTTTTGCTCAA+TGG - Chr8:81256855-81256874 MsG0880047040.01.T01:intron 35.0%
! AGTACTAATCTTAAAGGTGC+AGG + Chr8:81256794-81256813 None:intergenic 35.0%
! AGTTTTCAGCTTTTCCTTTG+TGG - Chr8:81259174-81259193 MsG0880047040.01.T01:CDS 35.0%
! CATATGAAACAGTATCGGAT+TGG - Chr8:81259566-81259585 MsG0880047040.01.T01:intron 35.0%
! CCTTCAAAGTTTTGCTCAAT+GGG + Chr8:81256687-81256706 None:intergenic 35.0%
! CTTTTCTTGACAACATCAAG+AGG + Chr8:81259237-81259256 None:intergenic 35.0%
! TCTACAAATTTAGGTTCCCA+CGG - Chr8:81256093-81256112 MsG0880047040.01.T01:three_prime_UTR 35.0%
!! AAGCCTTGTTAATAGTGATG+GGG + Chr8:81256961-81256980 None:intergenic 35.0%
!! ACACCTTATATTTCTGGTGA+TGG - Chr8:81258760-81258779 MsG0880047040.01.T01:CDS 35.0%
!! ACCAGAAATATAAGGTGTTG+TGG + Chr8:81258758-81258777 None:intergenic 35.0%
!! AGAAATATAAGGTGTTGTGG+TGG + Chr8:81258755-81258774 None:intergenic 35.0%
!! CGGATCTTTGGTTATTTTGT+TGG + Chr8:81258828-81258847 None:intergenic 35.0%
!! GAAGCCTTGTTAATAGTGAT+GGG + Chr8:81256962-81256981 None:intergenic 35.0%
!!! TGCCTGCTTTTTAGGTTATT+AGG - Chr8:81258389-81258408 MsG0880047040.01.T01:intron 35.0%
AAACTTGAAATTCCAACCCG+CGG + Chr8:81257157-81257176 None:intergenic 40.0%
AAGAGGATGACAGACAAGTT+TGG + Chr8:81259220-81259239 None:intergenic 40.0%
AAGCCTTGGTAAGAATGATG+GGG - Chr8:81256600-81256619 MsG0880047040.01.T01:intron 40.0%
ACAAGTGTGAACATTGCAAC+TGG + Chr8:81257071-81257090 None:intergenic 40.0%
ACCATTGCTTCTACTACTCA+GGG - Chr8:81256902-81256921 MsG0880047040.01.T01:intron 40.0%
ATAGCAATCCTTAAAGAGGC+AGG + Chr8:81257749-81257768 None:intergenic 40.0%
ATTATCTTCTCCGGTGGTAT+TGG + Chr8:81259148-81259167 None:intergenic 40.0%
CCAAATTGTAGTCCTGCATA+AGG + Chr8:81258077-81258096 None:intergenic 40.0%
CCCATTGAGCAAAACTTTGA+AGG - Chr8:81256684-81256703 MsG0880047040.01.T01:intron 40.0%
CCTTATGCAGGACTACAATT+TGG - Chr8:81258074-81258093 MsG0880047040.01.T01:intron 40.0%
CCTTGTCGTGGATTTAGTAT+CGG + Chr8:81256984-81257003 None:intergenic 40.0%
CGCAAAACAGAAGAGCTTAA+AGG + Chr8:81257869-81257888 None:intergenic 40.0%
CGTTCAGTTGACAACAAACA+AGG - Chr8:81256350-81256369 MsG0880047040.01.T01:intron 40.0%
CTTCCCCATCACTATTAACA+AGG - Chr8:81256955-81256974 MsG0880047040.01.T01:intron 40.0%
GAAAACTCGTCTATGAGTTG+TGG + Chr8:81257599-81257618 None:intergenic 40.0%
GAAAGCCTTGGTAAGAATGA+TGG - Chr8:81256598-81256617 MsG0880047040.01.T01:intron 40.0%
GAAATATGAAAAAGCGGGTG+TGG + Chr8:81258644-81258663 None:intergenic 40.0%
GACTGCATTGCTATAATCTC+TGG - Chr8:81256517-81256536 MsG0880047040.01.T01:CDS 40.0%
GCTTTCTTCCTATCCTATGA+AGG + Chr8:81259670-81259689 None:intergenic 40.0%
GGATTACAACATACACACGA+TGG - Chr8:81259021-81259040 MsG0880047040.01.T01:intron 40.0%
GGTATAATCTCAACTAGGGT+TGG + Chr8:81258056-81258075 None:intergenic 40.0%
GGTGATAGCCTAAACACAAA+TGG + Chr8:81257136-81257155 None:intergenic 40.0%
GTCCTACTCCTGAGTTATAT+AGG - Chr8:81257792-81257811 MsG0880047040.01.T01:intron 40.0%
TATAGATCGAAGGGCTTCAA+AGG - Chr8:81259386-81259405 MsG0880047040.01.T01:intron 40.0%
TCATATGTTCTTTGTGGTCC+TGG - Chr8:81256559-81256578 MsG0880047040.01.T01:CDS 40.0%
TCTCTGGTACTAGGAATGTA+TGG + Chr8:81257028-81257047 None:intergenic 40.0%
TCTCTGGTACTAGGAATGTT+TGG - Chr8:81256533-81256552 MsG0880047040.01.T01:CDS 40.0%
TCTTTACTAATAAGGTCCCC+TGG - Chr8:81257634-81257653 MsG0880047040.01.T01:CDS 40.0%
TGGATTTCCAATGTGTTGTG+TGG + Chr8:81257008-81257027 None:intergenic 40.0%
TTGCTATGATCTCTGGTACT+AGG + Chr8:81257037-81257056 None:intergenic 40.0%
! CTCTTCTGTTTTGCGTTGTA+TGG - Chr8:81257874-81257893 MsG0880047040.01.T01:intron 40.0%
! GCCTTCAAAGTTTTGCTCAA+TGG + Chr8:81256688-81256707 None:intergenic 40.0%
! TAGGATAGGAAGAAAGCATG+AGG - Chr8:81259673-81259692 MsG0880047040.01.T01:intron 40.0%
! TCAGCTTTTCCTTTGTGGAT+TGG - Chr8:81259179-81259198 MsG0880047040.01.T01:CDS 40.0%
!! GGAAGCCTTGTTAATAGTGA+TGG + Chr8:81256963-81256982 None:intergenic 40.0%
AAACTGGAAATTCCAGGCGT+TGG - Chr8:81256413-81256432 MsG0880047040.01.T01:intron 45.0%
AATGAGAAGCAAGTGCACAG+TGG + Chr8:81258851-81258870 None:intergenic 45.0%
ACAAGGACCACACAACACAT+TGG - Chr8:81256998-81257017 MsG0880047040.01.T01:intron 45.0%
ACATGTATGATGCCGTGCAA+CGG - Chr8:81259452-81259471 MsG0880047040.01.T01:intron 45.0%
ACCCTGAGTAGTAGAAGCAA+TGG + Chr8:81256906-81256925 None:intergenic 45.0%
ACGAATGCTGACCTCATGTT+AGG + Chr8:81257984-81258003 None:intergenic 45.0%
AGGGAGCTCAATTGCTGAAA+TGG + Chr8:81257104-81257123 None:intergenic 45.0%
ATAACTAAGCCTGCACTTGC+AGG - Chr8:81258469-81258488 MsG0880047040.01.T01:intron 45.0%
ATATGGGTTCAACTCCCATC+AGG + Chr8:81258705-81258724 None:intergenic 45.0%
ATCAGATTGTTGTAGCGGTC+AGG - Chr8:81258578-81258597 MsG0880047040.01.T01:CDS 45.0%
ATCCAGACTCGAGGATTTCA+AGG - Chr8:81258011-81258030 MsG0880047040.01.T01:intron 45.0%
ATGCCGTGCAACGGATATTT+CGG - Chr8:81259461-81259480 MsG0880047040.01.T01:intron 45.0%
CAACGGATATTTCGGTCAGA+GGG - Chr8:81259469-81259488 MsG0880047040.01.T01:intron 45.0%
CCGATACTAAATCCACGACA+AGG - Chr8:81256981-81257000 MsG0880047040.01.T01:intron 45.0%
CTATGTTGCCTGCCTCTTTA+AGG - Chr8:81257738-81257757 MsG0880047040.01.T01:CDS 45.0%
CTTAAAGAGGCAGGCAACAT+AGG + Chr8:81257740-81257759 None:intergenic 45.0%
CTTCCCCATCATTCTTACCA+AGG + Chr8:81256606-81256625 None:intergenic 45.0%
CTTGACCGTCTTCCATCTTA+AGG + Chr8:81259747-81259766 None:intergenic 45.0%
GACCATTGCTTCTACTACTC+AGG - Chr8:81256901-81256920 MsG0880047040.01.T01:intron 45.0%
GACTGCATTGCTATGATCTC+TGG + Chr8:81257044-81257063 None:intergenic 45.0%
GATATTTCGGTCAGAGGGTT+GGG - Chr8:81259474-81259493 MsG0880047040.01.T01:intron 45.0%
GCAAGTGCAGGCTTAGTTAT+TGG + Chr8:81258469-81258488 None:intergenic 45.0%
GCTGAACAGAAACATCATGG+TGG - Chr8:81257770-81257789 MsG0880047040.01.T01:intron 45.0%
GGAGCTCAATTGCTGAAATG+GGG + Chr8:81257102-81257121 None:intergenic 45.0%
GGATTTCAAGGCATGTATGC+TGG - Chr8:81258023-81258042 MsG0880047040.01.T01:intron 45.0%
GGGAGCTCAATTGCTGAAAT+GGG + Chr8:81257103-81257122 None:intergenic 45.0%
TAACTAAGCCTGCACTTGCA+GGG - Chr8:81258470-81258489 MsG0880047040.01.T01:intron 45.0%
TAGATGATTAACGGGGGAAC+TGG + Chr8:81256077-81256096 None:intergenic 45.0%
TGACCGAAATATCCGTTGCA+CGG + Chr8:81259467-81259486 None:intergenic 45.0%
TTGTGTTTAGGCTATCACCG+CGG - Chr8:81257137-81257156 MsG0880047040.01.T01:intron 45.0%
! GAGAGGCTGAAATTTTACCG+AGG + Chr8:81258126-81258145 None:intergenic 45.0%
! GGTGCAGCTTTAACAGTTGA+TGG + Chr8:81259523-81259542 None:intergenic 45.0%
!! CTTCAAAGGCATCCCAGATA+CGG - Chr8:81259400-81259419 MsG0880047040.01.T01:intron 45.0%
!! TACATTTAAGCGTTGGGCCT+CGG - Chr8:81258106-81258125 MsG0880047040.01.T01:intron 45.0%
!! TCACTGAACTTGTTGTCCAG+CGG - Chr8:81255952-81255971 MsG0880047040.01.T01:three_prime_UTR 45.0%
!!! GCTTTTCCTTTGTGGATTGG+CGG - Chr8:81259182-81259201 MsG0880047040.01.T01:CDS 45.0%
AACTAAGCCTGCACTTGCAG+GGG - Chr8:81258471-81258490 MsG0880047040.01.T01:intron 50.0%
ACAAGTGTGAACGTTGCAGC+GGG - Chr8:81256490-81256509 MsG0880047040.01.T01:CDS 50.0%
ACCCCTCCAATTGTCTTGTG+GGG - Chr8:81258602-81258621 MsG0880047040.01.T01:CDS 50.0%
ACTGTTAAAGCTGCACCTGC+TGG - Chr8:81259526-81259545 MsG0880047040.01.T01:intron 50.0%
ATTCGCCATCTAAGCTCCAG+GGG + Chr8:81257653-81257672 None:intergenic 50.0%
CACAAGTGTGAACGTTGCAG+CGG - Chr8:81256489-81256508 MsG0880047040.01.T01:CDS 50.0%
CACCCCTCCAATTGTCTTGT+GGG - Chr8:81258601-81258620 MsG0880047040.01.T01:CDS 50.0%
CATAGGCTTGCCAGTTGCAA+AGG + Chr8:81257723-81257742 None:intergenic 50.0%
CATTCGCCATCTAAGCTCCA+GGG + Chr8:81257654-81257673 None:intergenic 50.0%
CTATAACATGTACCCACCGC+TGG + Chr8:81255971-81255990 None:intergenic 50.0%
GCAACGGATATTTCGGTCAG+AGG - Chr8:81259468-81259487 MsG0880047040.01.T01:intron 50.0%
GCACAACATCCATTGCATGC+AGG + Chr8:81258189-81258208 None:intergenic 50.0%
GGATATTTCGGTCAGAGGGT+TGG - Chr8:81259473-81259492 MsG0880047040.01.T01:intron 50.0%
GGTGGTACCCCAAAAACAGA+TGG - Chr8:81256434-81256453 MsG0880047040.01.T01:intron 50.0%
GTCGATATCATCCAGACTCG+AGG - Chr8:81258002-81258021 MsG0880047040.01.T01:intron 50.0%
GTTCTTTGTGGTCCTGGTCA+TGG - Chr8:81256565-81256584 MsG0880047040.01.T01:CDS 50.0%
TCAACTCGAGCTCCGTATCT+GGG + Chr8:81259415-81259434 None:intergenic 50.0%
TGCCTTGAAATCCTCGAGTC+TGG + Chr8:81258016-81258035 None:intergenic 50.0%
TGTGGTCCTGGTCATGGAAT+CGG - Chr8:81256571-81256590 MsG0880047040.01.T01:CDS 50.0%
TGTGTTTAGGCTATCACCGC+GGG - Chr8:81257138-81257157 MsG0880047040.01.T01:intron 50.0%
! GGTTGGGCTGGACTATACAA+GGG - Chr8:81259490-81259509 MsG0880047040.01.T01:intron 50.0%
!! GGAATCGGTGTTGAAAGCCT+TGG - Chr8:81256586-81256605 MsG0880047040.01.T01:CDS 50.0%
!! TCAACACCGATTCCATGACC+AGG + Chr8:81256580-81256599 None:intergenic 50.0%
!! TGAACTTGTTGTCCAGCGGT+GGG - Chr8:81255956-81255975 MsG0880047040.01.T01:three_prime_UTR 50.0%
AAGGTCCCCTGGAGCTTAGA+TGG - Chr8:81257645-81257664 MsG0880047040.01.T01:CDS 55.0%
ACGAATGTCACAGCACCAGC+AGG + Chr8:81259544-81259563 None:intergenic 55.0%
ACGCCCCACAAGACAATTGG+AGG + Chr8:81258608-81258627 None:intergenic 55.0%
CACACGCCCCACAAGACAAT+TGG + Chr8:81258611-81258630 None:intergenic 55.0%
CCATTCGCCATCTAAGCTCC+AGG + Chr8:81257655-81257674 None:intergenic 55.0%
CCTGGAGCTTAGATGGCGAA+TGG - Chr8:81257652-81257671 MsG0880047040.01.T01:CDS 55.0%
CGCCCCACAAGACAATTGGA+GGG + Chr8:81258607-81258626 None:intergenic 55.0%
CTCAACTCGAGCTCCGTATC+TGG + Chr8:81259416-81259435 None:intergenic 55.0%
GAGAAGCAAGTGCACAGTGG+CGG + Chr8:81258848-81258867 None:intergenic 55.0%
GCACCCCTCCAATTGTCTTG+TGG - Chr8:81258600-81258619 MsG0880047040.01.T01:CDS 55.0%
GCCCCACAAGACAATTGGAG+GGG + Chr8:81258606-81258625 None:intergenic 55.0%
GTGTTGTGTGGTCCTTGTCG+TGG + Chr8:81256996-81257015 None:intergenic 55.0%
TTCCAGCCGCCAATCCACAA+AGG + Chr8:81259191-81259210 None:intergenic 55.0%
TTTAGGCTATCACCGCGGGT+TGG - Chr8:81257142-81257161 MsG0880047040.01.T01:intron 55.0%
! AGAAAAGTTGGGGGGTGCAG+TGG + Chr8:81258523-81258542 None:intergenic 55.0%
! GGGTTGGGCTGGACTATACA+AGG - Chr8:81259489-81259508 MsG0880047040.01.T01:intron 55.0%
!! AGTGCACAGTGGCGGATCTT+TGG + Chr8:81258840-81258859 None:intergenic 55.0%
!! CTGAACTTGTTGTCCAGCGG+TGG - Chr8:81255955-81255974 MsG0880047040.01.T01:three_prime_UTR 55.0%
!! CTGGAAATTCCAGGCGTTGG+TGG - Chr8:81256416-81256435 MsG0880047040.01.T01:intron 55.0%
!! TTCCTTTGTGGATTGGCGGC+TGG - Chr8:81259186-81259205 MsG0880047040.01.T01:CDS 55.0%
GGATCTCCTTGGAGACCCCT+AGG - Chr8:81258495-81258514 MsG0880047040.01.T01:intron 60.0%
TAAGCCTGCACTTGCAGGGG+CGG - Chr8:81258474-81258493 MsG0880047040.01.T01:intron 60.0%
TTTCGGTCAGAGGGTTGGGC+TGG - Chr8:81259478-81259497 MsG0880047040.01.T01:intron 60.0%
! TTTGGGGTACCACCAACGCC+TGG + Chr8:81256428-81256447 None:intergenic 60.0%
AGATCCGCCCCTGCAAGTGC+AGG + Chr8:81258481-81258500 None:intergenic 65.0%
CTTGCAGGGGCGGATCTCCT+TGG - Chr8:81258484-81258503 MsG0880047040.01.T01:intron 65.0%
GTGGCACCTAGGGGTCTCCA+AGG + Chr8:81258504-81258523 None:intergenic 65.0%
! GGGGGGTGCAGTGGCACCTA+GGG + Chr8:81258514-81258533 None:intergenic 70.0%
! GGGGGTGCAGTGGCACCTAG+GGG + Chr8:81258513-81258532 None:intergenic 70.0%
! TGGGGGGTGCAGTGGCACCT+AGG + Chr8:81258515-81258534 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 81255930 81259805 81255930 ID=MsG0880047040.01;Name=MsG0880047040.01
Chr8 mRNA 81255930 81259805 81255930 ID=MsG0880047040.01.T01;Parent=MsG0880047040.01;Name=MsG0880047040.01.T01;_AED=0.40;_eAED=0.60;_QI=0|0.4|0.5|1|1|0.83|6|199|374
Chr8 exon 81255930 81256344 81255930 ID=MsG0880047040.01.T01:exon:34859;Parent=MsG0880047040.01.T01
Chr8 exon 81256472 81256612 81256472 ID=MsG0880047040.01.T01:exon:34858;Parent=MsG0880047040.01.T01
Chr8 exon 81257608 81257760 81257608 ID=MsG0880047040.01.T01:exon:34857;Parent=MsG0880047040.01.T01
Chr8 exon 81258576 81258930 81258576 ID=MsG0880047040.01.T01:exon:34856;Parent=MsG0880047040.01.T01
Chr8 exon 81259091 81259306 81259091 ID=MsG0880047040.01.T01:exon:34855;Parent=MsG0880047040.01.T01
Chr8 exon 81259762 81259805 81259762 ID=MsG0880047040.01.T01:exon:34854;Parent=MsG0880047040.01.T01
Chr8 CDS 81259762 81259805 81259762 ID=MsG0880047040.01.T01:cds;Parent=MsG0880047040.01.T01
Chr8 CDS 81259091 81259306 81259091 ID=MsG0880047040.01.T01:cds;Parent=MsG0880047040.01.T01
Chr8 CDS 81258576 81258930 81258576 ID=MsG0880047040.01.T01:cds;Parent=MsG0880047040.01.T01
Chr8 CDS 81257608 81257760 81257608 ID=MsG0880047040.01.T01:cds;Parent=MsG0880047040.01.T01
Chr8 CDS 81256472 81256612 81256472 ID=MsG0880047040.01.T01:cds;Parent=MsG0880047040.01.T01
Chr8 CDS 81256129 81256344 81256129 ID=MsG0880047040.01.T01:cds;Parent=MsG0880047040.01.T01
Chr8 three_prime_UTR 81255930 81256128 81255930 ID=MsG0880047040.01.T01:three_prime_utr;Parent=MsG0880047040.01.T01
Gene Sequence

>MsG0880047040.01.T01

ATGTGGATGTGGGTAACTGTTATCACTGAACTTGTTGTCCAGCGGCGTTGGTGGTACCCCAAAAACAGATGGTATCAAAATAGGGGTTCAAATGACATAACTATCACAAGTGTGAACGTTGCAGCGGGTGATGACTGCATTGCTATAATCTCTGGTACTAGGAATGTTTGGATTTCATATGTTCTTTGTGGTCCTGGTCATGGAATCGGTGTTGAAAGCCTTGGTAAGAATGATGGGGAAGATGTTGAAATGCACATTCAATTAGTACTTAGCGATATTCATCATAATATCTTCATAGACAAAATTAGAAACCTTGAAAGTTTTGCTCAATGGAGAAGCCCATGTTTTAGTTTTAAGACCATTGCTTCTACTACTCAGGGTGCAATTCCTCGTATCTATGTTTTCAACATCTTCCCCATCACTATTAACAAGGCTTCCGATACTAAATCCACGACAAGGACCACACAACACATTGGAAATCCATACATTCCTAGTACCAGAGATCATAGCAATGCAGTCATCACCAGTTGCAATGTTCACACTTGTGATAGTTACCCCATTTCAGCAATTGAGCTCCCTATCTTGACACCATTTGTGTTTAGGCTATCACCGCGGGTATATCCTAACATGAGGTCAGCATTCGTCGATATCATCCAGACTCGAGGATTTCAAGGCATGTATGCTGGATTGTCTCCAACCCTAGTTGAGATTATACCTTATGCAGGACTACAATTTGGAACCTATGATACATTTAAGCGTTGGGCCTCGGCTTGGAACCATAATAGATATTCCAATACCACCGGAGAAGATAATATTTCTAGTTTTCAGCTTTTCCTTTGTGGATTGGCGGCTGGAACATGTGCCAAACTTGTCTGTCATCCTCTTGATGTTGTCAAGAAAAGGTTTCAGATCGAAGGGCTTCAAAGGCATCCCAGATACGGAGCTCGAGTTGAGCATCGAGCATACAGTAACATGTATGATGCCGTGCAACGGATATTTCGGTCAGAGGGTTGGGCTGGACTATACAAGGGAATAATTCCATCAACTGTTAAAGCTGCACCTGCTGGTGCTGTGACATTCGTAGCATATGAAACAGTATCGGATTGGCTAGAGTCCTTGAATTGA
Protein sequence

>MsG0880047040.01.T01

MWMWVTVITELVVQRRWWYPKNRWYQNRGSNDITITSVNVAAGDDCIAIISGTRNVWISYVLCGPGHGIGVESLGKNDGEDVEMHIQLVLSDIHHNIFIDKIRNLESFAQWRSPCFSFKTIASTTQGAIPRIYVFNIFPITINKASDTKSTTRTTQHIGNPYIPSTRDHSNAVITSCNVHTCDSYPISAIELPILTPFVFRLSPRVYPNMRSAFVDIIQTRGFQGMYAGLSPTLVEIIPYAGLQFGTYDTFKRWASAWNHNRYSNTTGEDNISSFQLFLCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVEHRAYSNMYDAVQRIFRSEGWAGLYKGIIPSTVKAAPAGAVTFVAYETVSDWLESLN*