AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047356.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047356.01.T01 MTR_4g125480 82.036 167 5 1 91 232 758 924 2.37e-84 270
MsG0880047356.01.T01 MTR_4g125480 94.444 72 4 0 1 72 572 643 2.78e-38 141
MsG0880047356.01.T01 MTR_4g125480 57.143 56 24 0 1 56 328 383 3.75e-11 62.8
MsG0880047356.01.T01 MTR_4g125480 54.545 55 25 0 1 55 474 528 9.89e-11 61.6
MsG0880047356.01.T01 MTR_4g125480 82.036 167 5 1 91 232 778 944 3.26e-84 270
MsG0880047356.01.T01 MTR_4g125480 94.444 72 4 0 1 72 592 663 2.66e-38 141
MsG0880047356.01.T01 MTR_4g125480 57.143 56 24 0 1 56 348 403 3.43e-11 63.2
MsG0880047356.01.T01 MTR_4g125480 54.545 55 25 0 1 55 494 548 9.04e-11 61.6
MsG0880047356.01.T01 MTR_4g125480 82.036 167 5 1 91 232 778 944 4.71e-84 270
MsG0880047356.01.T01 MTR_4g125480 94.444 72 4 0 1 72 592 663 2.80e-38 141
MsG0880047356.01.T01 MTR_4g125480 57.143 56 24 0 1 56 348 403 3.28e-11 63.2
MsG0880047356.01.T01 MTR_4g125480 54.545 55 25 0 1 55 494 548 8.91e-11 61.6
MsG0880047356.01.T01 MTR_2g041470 64.972 177 37 1 81 232 549 725 1.26e-70 230
MsG0880047356.01.T01 MTR_2g041470 55.556 72 32 0 1 72 373 444 9.03e-18 82.4
MsG0880047356.01.T01 MTR_2g041470 59.055 127 27 1 86 187 554 680 1.61e-39 144
MsG0880047356.01.T01 MTR_2g041470 55.556 72 32 0 1 72 373 444 6.45e-18 82.8
MsG0880047356.01.T01 MTR_7g099030 42.384 151 62 1 107 232 600 750 6.17e-33 126
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047356.01.T01 AT5G35560 56.497 177 52 1 81 232 484 660 1.83e-57 194
MsG0880047356.01.T01 AT5G35560 56.497 177 52 1 81 232 510 686 2.06e-57 194
MsG0880047356.01.T01 AT2G20320 42.767 159 66 1 99 232 790 948 2.49e-33 127
MsG0880047356.01.T01 AT2G20320 42.767 159 66 1 99 232 790 948 2.49e-33 127

Find 56 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGATCTTCTAATTCTTTAT+TGG 0.135191 8:-85210629 None:intergenic
ATAAGAATACTCACTATATA+AGG 0.235466 8:-85213670 None:intergenic
ACCGGATTGGTTGTCCTTCC+AGG 0.252367 8:+85211429 MsG0880047356.01.T01:CDS
AGTTGTTGCCTGCTCTAATT+TGG 0.255522 8:+85212703 MsG0880047356.01.T01:CDS
AAATTATATGCGAGTATTAC+CGG 0.320510 8:+85211411 MsG0880047356.01.T01:CDS
CCTTATCACGCAGCTCTTGT+AGG 0.343628 8:+85214552 MsG0880047356.01.T01:CDS
CTTGGCAGTTGTGGTATTGT+TGG 0.362762 8:-85214501 None:intergenic
CCTACAAGAGCTGCGTGATA+AGG 0.400743 8:-85214552 None:intergenic
CTGGAGAATGCAATGGTTGA+TGG 0.404044 8:+85210466 None:intergenic
GATATTAGCTCTTTCTGTCT+TGG 0.423417 8:-85214519 None:intergenic
TAACATTGGTAAACTTTGAC+TGG 0.428914 8:-85214052 None:intergenic
CTACAAGAGCTGCGTGATAA+GGG 0.433410 8:-85214551 None:intergenic
TCTGAAGACAATGATCAGTA+TGG 0.434045 8:+85210592 MsG0880047356.01.T01:CDS
ATCTTCTAATTCTTTATTGG+TGG 0.438856 8:-85210626 None:intergenic
TGGACTACTGCTTGCTTATG+TGG 0.443811 8:+85211773 MsG0880047356.01.T01:CDS
CCGGATTGGTTGTCCTTCCA+GGG 0.449866 8:+85211430 MsG0880047356.01.T01:CDS
ACAACAGCAAAAGAAGAATC+TGG 0.471224 8:+85210559 MsG0880047356.01.T01:CDS
TCATTGTCTTCAGAAATTGT+AGG 0.483670 8:-85210583 None:intergenic
TAAGAATACTCACTATATAA+GGG 0.485316 8:-85213669 None:intergenic
AGGCAACTTCGTTATCTGTA+TGG 0.486973 8:+85211753 MsG0880047356.01.T01:CDS
AAACTTTGACTGGACTTCAC+TGG 0.488522 8:-85214042 None:intergenic
CATTGTCTTCAGAAATTGTA+GGG 0.497709 8:-85210582 None:intergenic
CCCTGGAAGGACAACCAATC+CGG 0.498435 8:-85211430 None:intergenic
TTATTGTGGTTGATGCCAAC+AGG 0.502457 8:+85214072 MsG0880047356.01.T01:CDS
TGTCCTATCAATTTCATGCT+CGG 0.509586 8:-85210539 None:intergenic
CAGGTGTTAACATTCTTAGC+AGG 0.509682 8:+85212659 MsG0880047356.01.T01:intron
TCTTGTAGGAGAAAGTTACT+TGG 0.510737 8:+85214566 MsG0880047356.01.T01:CDS
TGGAGAGTTGGAGCCTTACA+AGG 0.512953 8:+85210486 MsG0880047356.01.T01:CDS
ATATGCGAGTATTACCGGAT+TGG 0.514796 8:+85211416 MsG0880047356.01.T01:CDS
TCTTTCTGTCTTGGCAGTTG+TGG 0.523888 8:-85214510 None:intergenic
GGTTGATGCCAACAGGAACC+AGG 0.534661 8:+85214079 MsG0880047356.01.T01:CDS
TAGGAGAAAGTTACTTGGGA+AGG 0.540092 8:+85214571 MsG0880047356.01.T01:CDS
TTACCGAGCATGAAATTGAT+AGG 0.542943 8:+85210536 MsG0880047356.01.T01:CDS
GTATGAATGCACAGAAGTGC+AGG 0.544270 8:+85214605 MsG0880047356.01.T01:CDS
TGCAATGGTTGATGGAGAGT+TGG 0.550418 8:+85210474 None:intergenic
CTTGTAGGAGAAAGTTACTT+GGG 0.552826 8:+85214567 MsG0880047356.01.T01:CDS
ATATAATTTGTAGTGGTCCA+TGG 0.555439 8:-85211397 None:intergenic
GGCACAGAACACTCTTGCGA+TGG 0.558151 8:+85211727 MsG0880047356.01.T01:intron
CAGGAGAGGCAAAATAGCAT+GGG 0.558806 8:-85210659 None:intergenic
CCAATAAAGAATTAGAAGAT+CGG 0.559196 8:+85210629 MsG0880047356.01.T01:CDS
GCAGGAGAGGCAAAATAGCA+TGG 0.562597 8:-85210660 None:intergenic
GAACACTCTTGCGATGGAAG+AGG 0.565276 8:+85211733 MsG0880047356.01.T01:CDS
AACACAAACCTGGTTCCTGT+TGG 0.574238 8:-85214087 None:intergenic
AAAGTTTACCAATGTTATTG+TGG 0.574396 8:+85214058 MsG0880047356.01.T01:CDS
ATACTCACTATATAAGGGAC+AGG 0.574732 8:-85213664 None:intergenic
GGCATCAACCACAATAACAT+TGG 0.578806 8:-85214066 None:intergenic
CGGATTGGTTGTCCTTCCAG+GGG 0.587875 8:+85211431 MsG0880047356.01.T01:CDS
AACACATACCAAATTAGAGC+AGG 0.601107 8:-85212711 None:intergenic
TACTCGCATATAATTTGTAG+TGG 0.605532 8:-85211404 None:intergenic
AAAGTTACTTGGGAAGGAGA+AGG 0.608555 8:+85214577 MsG0880047356.01.T01:CDS
ACTTCTGTGCATTCATACAC+TGG 0.608746 8:-85214600 None:intergenic
TTTCATACTGGGAATAACGC+AGG 0.628198 8:-85210678 None:intergenic
TACTGGGAATAACGCAGGAG+AGG 0.649934 8:-85210673 None:intergenic
GTAAGTGATGAACCCCTGGA+AGG 0.657537 8:-85211443 None:intergenic
AATTTGCAGGAAAATGACCA+TGG 0.689684 8:+85211380 MsG0880047356.01.T01:intron
AGGAGAGGCAAAATAGCATG+GGG 0.701722 8:-85210658 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATATTAAAAATTAACATA+TGG - Chr8:85211902-85211921 None:intergenic 10.0%
!!! TATTTTTTTTTATTATTCCT+TGG - Chr8:85212976-85212995 None:intergenic 10.0%
!! ATGAAAGTTAATATTAAAGT+TGG - Chr8:85213854-85213873 None:intergenic 15.0%
!! TAATTGCAAATGAAATAATA+AGG - Chr8:85211033-85211052 None:intergenic 15.0%
!! TTAATTAACATGTATAAACT+CGG - Chr8:85213559-85213578 None:intergenic 15.0%
!!! AAACAAAATTATGATGTTTT+TGG + Chr8:85211070-85211089 MsG0880047356.01.T01:intron 15.0%
!! AGTAAGGATTAATTGATTAA+AGG - Chr8:85214397-85214416 None:intergenic 20.0%
!! AGTTAATATTAAAGTTGGAT+TGG - Chr8:85213849-85213868 None:intergenic 20.0%
!! ATAAGAATACTCACTATATA+AGG - Chr8:85213673-85213692 None:intergenic 20.0%
!! ATCATTACAAATTTAATCTG+AGG - Chr8:85212740-85212759 None:intergenic 20.0%
!! ATCTAATTGGTCAATAAAAA+TGG - Chr8:85213009-85213028 None:intergenic 20.0%
!! ATTATCAAATATCAACTGAT+GGG - Chr8:85213962-85213981 None:intergenic 20.0%
!! CTAAATTAACTATTCATATC+TGG - Chr8:85212463-85212482 None:intergenic 20.0%
!! GAAAGAAAAAAAAAAAGTTC+TGG - Chr8:85211847-85211866 None:intergenic 20.0%
!! TAAGAATACTCACTATATAA+GGG - Chr8:85213672-85213691 None:intergenic 20.0%
!! TATGTATGGATATATTCATT+AGG + Chr8:85211999-85212018 MsG0880047356.01.T01:intron 20.0%
!! TATTATCAAATATCAACTGA+TGG - Chr8:85213963-85213982 None:intergenic 20.0%
!! TGTTTAATGTTTATAAGCTT+GGG - Chr8:85212204-85212223 None:intergenic 20.0%
!! TTGATATAAGCTATATTCTT+TGG + Chr8:85213821-85213840 MsG0880047356.01.T01:intron 20.0%
!! TTTAATCAATTAATCCTTAC+TGG + Chr8:85214396-85214415 MsG0880047356.01.T01:intron 20.0%
!! TTTAGTCATTTAAATTCTCT+TGG - Chr8:85211258-85211277 None:intergenic 20.0%
!!! AATGTATGTTTTATATGCTT+TGG + Chr8:85211812-85211831 MsG0880047356.01.T01:intron 20.0%
!!! AATTTTGTTTCGAATTTAAC+TGG + Chr8:85213918-85213937 MsG0880047356.01.T01:intron 20.0%
!!! ATATTCTAATTTGTTGCAAT+AGG + Chr8:85214470-85214489 MsG0880047356.01.T01:intron 20.0%
!!! ATGATAATGTTTATAGTTAG+TGG + Chr8:85211348-85211367 MsG0880047356.01.T01:intron 20.0%
!!! TAAGTACTTCTTAGAATTTT+GGG + Chr8:85212131-85212150 MsG0880047356.01.T01:intron 20.0%
!!! TAAGTCGATCATATTTTTAA+TGG - Chr8:85213709-85213728 None:intergenic 20.0%
!!! TTAAGTACTTCTTAGAATTT+TGG + Chr8:85212130-85212149 MsG0880047356.01.T01:intron 20.0%
!!! TTTGAAATAGAACTTATGTA+TGG + Chr8:85211985-85212004 MsG0880047356.01.T01:intron 20.0%
!!! TTTTATCTTCTAGTTTTACA+AGG + Chr8:85213255-85213274 MsG0880047356.01.T01:intron 20.0%
!!! TTTTATTTCTACAGAAGATT+TGG + Chr8:85211953-85211972 MsG0880047356.01.T01:intron 20.0%
! AAAGTTTACCAATGTTATTG+TGG + Chr8:85214058-85214077 MsG0880047356.01.T01:CDS 25.0%
! AAATGTTTCCCTATAAAGAT+AGG - Chr8:85211097-85211116 None:intergenic 25.0%
! AAATTATATGCGAGTATTAC+CGG + Chr8:85211411-85211430 MsG0880047356.01.T01:CDS 25.0%
! ATCTTCTAATTCTTTATTGG+TGG - Chr8:85210629-85210648 None:intergenic 25.0%
! ATTGCCTAAAAAATTGATCT+AGG + Chr8:85214001-85214020 MsG0880047356.01.T01:intron 25.0%
! CATGTTTATGATATCTTCTT+TGG + Chr8:85213302-85213321 MsG0880047356.01.T01:intron 25.0%
! CCAATAAAGAATTAGAAGAT+CGG + Chr8:85210629-85210648 MsG0880047356.01.T01:CDS 25.0%
! CTAACTCAACTTTATAAAAC+CGG + Chr8:85212160-85212179 MsG0880047356.01.T01:intron 25.0%
! CTGTTTAATGTTTATAAGCT+TGG - Chr8:85212205-85212224 None:intergenic 25.0%
! GACAGTAAATATTTATAACG+CGG + Chr8:85212765-85212784 MsG0880047356.01.T01:intron 25.0%
! GACTAAATGATATTCTTGAT+GGG + Chr8:85211271-85211290 MsG0880047356.01.T01:intron 25.0%
! TATGAAAGGAAAACAATTTG+AGG - Chr8:85211123-85211142 None:intergenic 25.0%
! TGACTAAATGATATTCTTGA+TGG + Chr8:85211270-85211289 MsG0880047356.01.T01:intron 25.0%
! TGTTCTTATCAGAAATCATA+AGG - Chr8:85213597-85213616 None:intergenic 25.0%
! TTCTCTTACTGGATAAATTT+GGG + Chr8:85212365-85212384 MsG0880047356.01.T01:intron 25.0%
!! AACTTATTCTCTTTTCTCAT+TGG + Chr8:85211003-85211022 MsG0880047356.01.T01:intron 25.0%
!! AATGGTTATATTTTGTCCTT+TGG + Chr8:85212817-85212836 MsG0880047356.01.T01:intron 25.0%
!! ATATTTGATAATACCATTGC+TGG + Chr8:85213970-85213989 MsG0880047356.01.T01:intron 25.0%
!! TACATCTTTAGACAATTTTG+TGG + Chr8:85214363-85214382 MsG0880047356.01.T01:intron 25.0%
!! TCCTTTTCTTTTATGTTGTT+GGG + Chr8:85212040-85212059 MsG0880047356.01.T01:intron 25.0%
!! TGATATCTTCTTTGGTAATA+TGG + Chr8:85213310-85213329 MsG0880047356.01.T01:intron 25.0%
!! TGCATAATTTTCCTCTAATT+TGG - Chr8:85212501-85212520 None:intergenic 25.0%
!! TTCCTTTTCTTTTATGTTGT+TGG + Chr8:85212039-85212058 MsG0880047356.01.T01:intron 25.0%
!! TTGATTTTTGTCTAGTCATT+TGG + Chr8:85210968-85210987 MsG0880047356.01.T01:intron 25.0%
!! TTTTCCTTTCATATAAGTGA+TGG + Chr8:85211130-85211149 MsG0880047356.01.T01:intron 25.0%
!! TTTTTGGACCTATCTTTATA+GGG + Chr8:85211086-85211105 MsG0880047356.01.T01:intron 25.0%
!!! TGCGTAAATTTAAGTTGAAT+TGG + Chr8:85213160-85213179 MsG0880047356.01.T01:intron 25.0%
AAAAACTCAAGCATGTCATT+CGG - Chr8:85213637-85213656 None:intergenic 30.0%
AAGAAAAGGAAACCATATCA+TGG - Chr8:85212030-85212049 None:intergenic 30.0%
ACAACACAAATTCTGCAATT+AGG + Chr8:85212302-85212321 MsG0880047356.01.T01:intron 30.0%
ACTTTCATTGAACATGTTCA+AGG - Chr8:85213788-85213807 None:intergenic 30.0%
AGATCCATCACTTATATGAA+AGG - Chr8:85211137-85211156 None:intergenic 30.0%
ATCACTTACATTTCATCCTT+TGG + Chr8:85211457-85211476 MsG0880047356.01.T01:intron 30.0%
CACAGCTTTACAATTGTAAA+AGG - Chr8:85214200-85214219 None:intergenic 30.0%
CATTAAACAGACCATATCTT+TGG + Chr8:85212215-85212234 MsG0880047356.01.T01:intron 30.0%
CATTGTCTTCAGAAATTGTA+GGG - Chr8:85210585-85210604 None:intergenic 30.0%
CCGATCTTCTAATTCTTTAT+TGG - Chr8:85210632-85210651 None:intergenic 30.0%
CCTAAAAAATTGATCTAGGT+TGG + Chr8:85214005-85214024 MsG0880047356.01.T01:intron 30.0%
GCTTTACAATTGTAAAAGGA+AGG - Chr8:85214196-85214215 None:intergenic 30.0%
GTTCTCTTACTGGATAAATT+TGG + Chr8:85212364-85212383 MsG0880047356.01.T01:intron 30.0%
TAACATTGGTAAACTTTGAC+TGG - Chr8:85214055-85214074 None:intergenic 30.0%
TAAGAAGACCTTACGAAAAT+CGG + Chr8:85213089-85213108 MsG0880047356.01.T01:intron 30.0%
TCATTGTCTTCAGAAATTGT+AGG - Chr8:85210586-85210605 None:intergenic 30.0%
TCTTATCAGAAATCATAAGG+TGG - Chr8:85213594-85213613 None:intergenic 30.0%
TTCTTCTTAACTACAAACCA+TGG - Chr8:85211297-85211316 None:intergenic 30.0%
TTTCATGATAGACTGACTAA+AGG + Chr8:85212945-85212964 MsG0880047356.01.T01:intron 30.0%
! ATATAATTTGTAGTGGTCCA+TGG - Chr8:85211400-85211419 None:intergenic 30.0%
! CATTAGGTTTTACCATGATA+TGG + Chr8:85212015-85212034 MsG0880047356.01.T01:intron 30.0%
! CCTTTTCTTTTATGTTGTTG+GGG + Chr8:85212041-85212060 MsG0880047356.01.T01:intron 30.0%
! CTTTTACAATTGTAAAGCTG+TGG + Chr8:85214198-85214217 MsG0880047356.01.T01:intron 30.0%
! TAAACTCGGTCACTTTAATA+TGG - Chr8:85213545-85213564 None:intergenic 30.0%
! TACTCGCATATAATTTGTAG+TGG - Chr8:85211407-85211426 None:intergenic 30.0%
! TGATAAGAACATGATTTTCC+AGG + Chr8:85213606-85213625 MsG0880047356.01.T01:intron 30.0%
!! CGGTTTTATAAAGTTGAGTT+AGG - Chr8:85212162-85212181 None:intergenic 30.0%
!! GATAAACTTAGATTTGCTAG+TGG + Chr8:85213882-85213901 MsG0880047356.01.T01:intron 30.0%
!! GTTTTTGGACCTATCTTTAT+AGG + Chr8:85211085-85211104 MsG0880047356.01.T01:intron 30.0%
!! TACTTCTTAGAATTTTGGGT+TGG + Chr8:85212135-85212154 MsG0880047356.01.T01:intron 30.0%
!! TATATATGCTGCTTTCAATC+TGG + Chr8:85210755-85210774 MsG0880047356.01.T01:intron 30.0%
!!! ACTTCTTAGAATTTTGGGTT+GGG + Chr8:85212136-85212155 MsG0880047356.01.T01:intron 30.0%
!!! CCAACCTAGATCAATTTTTT+AGG - Chr8:85214008-85214027 None:intergenic 30.0%
AAATTCTGCAATTAGGTGGT+TGG + Chr8:85212309-85212328 MsG0880047356.01.T01:intron 35.0%
AACACATACCAAATTAGAGC+AGG - Chr8:85212714-85212733 None:intergenic 35.0%
AAGAAGACCTTACGAAAATC+GGG + Chr8:85213090-85213109 MsG0880047356.01.T01:intron 35.0%
AATTCTGCAATTAGGTGGTT+GGG + Chr8:85212310-85212329 MsG0880047356.01.T01:intron 35.0%
AATTTGCAGGAAAATGACCA+TGG + Chr8:85211380-85211399 MsG0880047356.01.T01:intron 35.0%
ACAACAGCAAAAGAAGAATC+TGG + Chr8:85210559-85210578 MsG0880047356.01.T01:CDS 35.0%
ACACAAATTCTGCAATTAGG+TGG + Chr8:85212305-85212324 MsG0880047356.01.T01:intron 35.0%
AGTTGTAACAGCATGTATGT+TGG - Chr8:85213056-85213075 None:intergenic 35.0%
ATACTCACTATATAAGGGAC+AGG - Chr8:85213667-85213686 None:intergenic 35.0%
ATTCTTGTTCCCTCATTGAT+TGG + Chr8:85212844-85212863 MsG0880047356.01.T01:intron 35.0%
ATTTCCAACAGTTCTCTTAC+TGG + Chr8:85212354-85212373 MsG0880047356.01.T01:intron 35.0%
CCCCAACAACATAAAAGAAA+AGG - Chr8:85212044-85212063 None:intergenic 35.0%
CCTTGTGAAGACAAAATTTC+AGG + Chr8:85211188-85211207 MsG0880047356.01.T01:intron 35.0%
CTCATGAAGTTGAAATGTAG+TGG + Chr8:85212551-85212570 MsG0880047356.01.T01:intron 35.0%
CTGATAAAACTGAAGCAGAA+AGG - Chr8:85213456-85213475 None:intergenic 35.0%
CTGCATTAAAAACACAAACC+TGG - Chr8:85214100-85214119 None:intergenic 35.0%
CTTGTAGGAGAAAGTTACTT+GGG + Chr8:85214567-85214586 MsG0880047356.01.T01:CDS 35.0%
GATGGTCTATGATATTCCAA+GGG - Chr8:85211494-85211513 None:intergenic 35.0%
GATTCAAGATTTGAGTCTTC+AGG + Chr8:85211639-85211658 MsG0880047356.01.T01:intron 35.0%
GATTTGAAAAGTTGCAGTAC+CGG + Chr8:85211547-85211566 MsG0880047356.01.T01:intron 35.0%
GTCATATGCTCATCAAACTT+AGG + Chr8:85211679-85211698 MsG0880047356.01.T01:intron 35.0%
GTTCAGAATGGACAAACAAT+CGG - Chr8:85212635-85212654 None:intergenic 35.0%
TAATCCTTACTGGAATGAGA+TGG + Chr8:85214406-85214425 MsG0880047356.01.T01:intron 35.0%
TCTGAAGACAATGATCAGTA+TGG + Chr8:85210592-85210611 MsG0880047356.01.T01:CDS 35.0%
TCTTGTAGGAGAAAGTTACT+TGG + Chr8:85214566-85214585 MsG0880047356.01.T01:CDS 35.0%
TGTCCTATCAATTTCATGCT+CGG - Chr8:85210542-85210561 None:intergenic 35.0%
TTACCGAGCATGAAATTGAT+AGG + Chr8:85210536-85210555 MsG0880047356.01.T01:CDS 35.0%
TTATCCAGTAAGAGAACTGT+TGG - Chr8:85212361-85212380 None:intergenic 35.0%
TTCAACTGTAGCCAAATTAG+AGG + Chr8:85212487-85212506 MsG0880047356.01.T01:intron 35.0%
TTGGAATATCATAGACCATC+CGG + Chr8:85211494-85211513 MsG0880047356.01.T01:intron 35.0%
TTGTCACAGTAACGTTTGAA+TGG + Chr8:85211591-85211610 MsG0880047356.01.T01:intron 35.0%
! AATTTTGTCTTCACAAGGTG+AGG - Chr8:85211186-85211205 None:intergenic 35.0%
! ACAGAAGATGCATCTTTTTC+GGG + Chr8:85211232-85211251 MsG0880047356.01.T01:intron 35.0%
! ATTCTTAGCAGGAATTTTGC+TGG + Chr8:85212670-85212689 MsG0880047356.01.T01:CDS 35.0%
! CCTGAAATTTTGTCTTCACA+AGG - Chr8:85211191-85211210 None:intergenic 35.0%
! GACAGAAGATGCATCTTTTT+CGG + Chr8:85211231-85211250 MsG0880047356.01.T01:intron 35.0%
! GAGGTTCGTATGTTTCTTTT+TGG + Chr8:85210896-85210915 MsG0880047356.01.T01:intron 35.0%
! GATATTAGCTCTTTCTGTCT+TGG - Chr8:85214522-85214541 None:intergenic 35.0%
! GTGGTATTTTACCAATTTGC+AGG + Chr8:85211367-85211386 MsG0880047356.01.T01:intron 35.0%
! TACTGTTTCTTTCATGACCA+GGG + Chr8:85213427-85213446 MsG0880047356.01.T01:intron 35.0%
! TTTCTTTTATGTTGTTGGGG+TGG + Chr8:85212044-85212063 MsG0880047356.01.T01:intron 35.0%
!! ATGGTCATTTTCCTGCAAAT+TGG - Chr8:85211381-85211400 None:intergenic 35.0%
!! CTTTATAAAACCGGCTTGTA+AGG + Chr8:85212169-85212188 MsG0880047356.01.T01:intron 35.0%
!! TGATCGATTTTCTCCTTGTA+AGG - Chr8:85210502-85210521 None:intergenic 35.0%
!!! ACATACATTTTCGAGTCTCA+AGG - Chr8:85211801-85211820 None:intergenic 35.0%
!!! CAGCGTGTTTACGTTTTTTA+TGG + Chr8:85210807-85210826 MsG0880047356.01.T01:intron 35.0%
!!! TTGTTTTTTCCATTTGCTCG+TGG + Chr8:85214280-85214299 MsG0880047356.01.T01:intron 35.0%
AAACTTTGACTGGACTTCAC+TGG - Chr8:85214045-85214064 None:intergenic 40.0%
AAAGCTGTGGTTTCGAAAGA+AGG + Chr8:85214211-85214230 MsG0880047356.01.T01:intron 40.0%
AAAGTTACTTGGGAAGGAGA+AGG + Chr8:85214577-85214596 MsG0880047356.01.T01:CDS 40.0%
AAATGTAAGTGATGAACCCC+TGG - Chr8:85211450-85211469 None:intergenic 40.0%
ACGATTCAGAGCTTTCATAC+TGG - Chr8:85210693-85210712 None:intergenic 40.0%
ACTGACTAAAGGATACACCA+AGG + Chr8:85212956-85212975 MsG0880047356.01.T01:intron 40.0%
ACTTCTGTGCATTCATACAC+TGG - Chr8:85214603-85214622 None:intergenic 40.0%
AGAAACATACGAACCTCCAA+AGG - Chr8:85210893-85210912 None:intergenic 40.0%
AGAAGACCTTACGAAAATCG+GGG + Chr8:85213091-85213110 MsG0880047356.01.T01:intron 40.0%
AGCGCTATAAAGCAAGTCTA+GGG - Chr8:85210870-85210889 None:intergenic 40.0%
AGGCAACTTCGTTATCTGTA+TGG + Chr8:85211753-85211772 MsG0880047356.01.T01:CDS 40.0%
AGTTGTTGCCTGCTCTAATT+TGG + Chr8:85212703-85212722 MsG0880047356.01.T01:CDS 40.0%
ATATGCGAGTATTACCGGAT+TGG + Chr8:85211416-85211435 MsG0880047356.01.T01:CDS 40.0%
ATCATGAGAGACAGCACTAA+TGG - Chr8:85212092-85212111 None:intergenic 40.0%
ATGCTTCACACACAATCCTT+GGG + Chr8:85213339-85213358 MsG0880047356.01.T01:intron 40.0%
ATTCTGCAATTAGGTGGTTG+GGG + Chr8:85212311-85212330 MsG0880047356.01.T01:intron 40.0%
CAGGTGTTAACATTCTTAGC+AGG + Chr8:85212659-85212678 MsG0880047356.01.T01:intron 40.0%
CAGTTGGAGGCAAATCTAAT+TGG - Chr8:85213022-85213041 None:intergenic 40.0%
CGATTCAGAGCTTTCATACT+GGG - Chr8:85210692-85210711 None:intergenic 40.0%
GAACTCAAACTGTCATTAGC+AGG - Chr8:85213512-85213531 None:intergenic 40.0%
GAATGTAATCCACGAGCAAA+TGG - Chr8:85214292-85214311 None:intergenic 40.0%
GCTTGAGCTTCTGAGTATAT+GGG + Chr8:85211923-85211942 MsG0880047356.01.T01:intron 40.0%
GGATGGTCTATGATATTCCA+AGG - Chr8:85211495-85211514 None:intergenic 40.0%
GGCATCAACCACAATAACAT+TGG - Chr8:85214069-85214088 None:intergenic 40.0%
GTCTCACATTGCCAAAGATA+TGG - Chr8:85212229-85212248 None:intergenic 40.0%
TAAACTCTTGAAGTCAGTCC+AGG + Chr8:85213727-85213746 MsG0880047356.01.T01:intron 40.0%
TAGGAGAAAGTTACTTGGGA+AGG + Chr8:85214571-85214590 MsG0880047356.01.T01:CDS 40.0%
TATGATATTCCAAGGGATGC+AGG - Chr8:85211487-85211506 None:intergenic 40.0%
TATGCTTCACACACAATCCT+TGG + Chr8:85213338-85213357 MsG0880047356.01.T01:intron 40.0%
TGCTTGAGCTTCTGAGTATA+TGG + Chr8:85211922-85211941 MsG0880047356.01.T01:intron 40.0%
TGGAATATCATAGACCATCC+GGG + Chr8:85211495-85211514 MsG0880047356.01.T01:intron 40.0%
TTAGTTGAAATGTCTCCCCA+AGG - Chr8:85213358-85213377 None:intergenic 40.0%
TTCATTGTATCGGGTGTGAA+GGG - Chr8:85212261-85212280 None:intergenic 40.0%
TTTCATACTGGGAATAACGC+AGG - Chr8:85210681-85210700 None:intergenic 40.0%
! ATGATATTCTTGATGGGCCA+TGG + Chr8:85211277-85211296 MsG0880047356.01.T01:intron 40.0%
! CATATACCCCGATTTTCGTA+AGG - Chr8:85213100-85213119 None:intergenic 40.0%
! CTGTGGGTTATATGAGTCAA+TGG + Chr8:85212799-85212818 MsG0880047356.01.T01:intron 40.0%
! GTACTGTTTCTTTCATGACC+AGG + Chr8:85213426-85213445 MsG0880047356.01.T01:intron 40.0%
! TTATTGTGGTTGATGCCAAC+AGG + Chr8:85214072-85214091 MsG0880047356.01.T01:CDS 40.0%
!! CATTGTTGTTTGTTCCTCTC+AGG + Chr8:85211706-85211725 MsG0880047356.01.T01:intron 40.0%
!!! GTTGGACTTTTTGAGACAGT+TGG - Chr8:85213038-85213057 None:intergenic 40.0%
AAAACTGCGCTCAAAAGCCA+CGG - Chr8:85210725-85210744 None:intergenic 45.0%
AACACAAACCTGGTTCCTGT+TGG - Chr8:85214090-85214109 None:intergenic 45.0%
AACACCTGCAGAGTTCAGAA+TGG - Chr8:85212647-85212666 None:intergenic 45.0%
AATCCCTCTACACGTCTATC+AGG - Chr8:85210928-85210947 None:intergenic 45.0%
ACGTAAACACGCTGTCTACT+AGG - Chr8:85210801-85210820 None:intergenic 45.0%
ACGTGAATGACAGTCACACT+TGG - Chr8:85212581-85212600 None:intergenic 45.0%
AGCTCCATCTCATTCCAGTA+AGG - Chr8:85214413-85214432 None:intergenic 45.0%
AGGAGAGGCAAAATAGCATG+GGG - Chr8:85210661-85210680 None:intergenic 45.0%
ATCCCTCTACACGTCTATCA+GGG - Chr8:85210927-85210946 None:intergenic 45.0%
CAAGGTAGTTATTCTGACGC+TGG + Chr8:85213273-85213292 MsG0880047356.01.T01:intron 45.0%
CAGGAGAGGCAAAATAGCAT+GGG - Chr8:85210662-85210681 None:intergenic 45.0%
CCTCCACACCTTCATTGTAT+CGG - Chr8:85212271-85212290 None:intergenic 45.0%
CTACAAGAGCTGCGTGATAA+GGG - Chr8:85214554-85214573 None:intergenic 45.0%
CTCCACACCTTCATTGTATC+GGG - Chr8:85212270-85212289 None:intergenic 45.0%
CTTCACACCCGATACAATGA+AGG + Chr8:85212260-85212279 MsG0880047356.01.T01:intron 45.0%
CTTCATTGTATCGGGTGTGA+AGG - Chr8:85212262-85212281 None:intergenic 45.0%
CTTCTCATCATTGCTTGTCC+TGG + Chr8:85212908-85212927 MsG0880047356.01.T01:intron 45.0%
CTTGCTTTATAGCGCTCCTT+TGG + Chr8:85210874-85210893 MsG0880047356.01.T01:intron 45.0%
CTTGGCAGTTGTGGTATTGT+TGG - Chr8:85214504-85214523 None:intergenic 45.0%
GAAAAGTCAAAGCGAAAGCC+AGG - Chr8:85212929-85212948 None:intergenic 45.0%
GAGCGCTATAAAGCAAGTCT+AGG - Chr8:85210871-85210890 None:intergenic 45.0%
GCAAAGCAAAAACAACCTCC+TGG - Chr8:85213748-85213767 None:intergenic 45.0%
GCAATCAGAGATACCAGCAA+TGG - Chr8:85213986-85214005 None:intergenic 45.0%
GGGAACAAGAATGCTTCCAA+AGG - Chr8:85212836-85212855 None:intergenic 45.0%
TACATCAGCTAACTCCAGAC+CGG - Chr8:85211569-85211588 None:intergenic 45.0%
TCATTGTATCGGGTGTGAAG+GGG - Chr8:85212260-85212279 None:intergenic 45.0%
TCTTTCTGTCTTGGCAGTTG+TGG - Chr8:85214513-85214532 None:intergenic 45.0%
TGCTGTTGTTCCGAATACTG+CGG - Chr8:85212873-85212892 None:intergenic 45.0%
TGCTTCACACACAATCCTTG+GGG + Chr8:85213340-85213359 MsG0880047356.01.T01:intron 45.0%
TGGACTACTGCTTGCTTATG+TGG + Chr8:85211773-85211792 MsG0880047356.01.T01:CDS 45.0%
TTCCCTGATAGACGTGTAGA+GGG + Chr8:85210922-85210941 MsG0880047356.01.T01:intron 45.0%
TTGTCCATTCTGAACTCTGC+AGG + Chr8:85212640-85212659 MsG0880047356.01.T01:intron 45.0%
TTTCCCTGATAGACGTGTAG+AGG + Chr8:85210921-85210940 MsG0880047356.01.T01:intron 45.0%
! CCATCGATAAGCTGGATTAG+CGG - Chr8:85213484-85213503 None:intergenic 45.0%
! GTATGAATGCACAGAAGTGC+AGG + Chr8:85214605-85214624 MsG0880047356.01.T01:CDS 45.0%
!! AAAACCGGCTTGTAAGGTGA+GGG + Chr8:85212175-85212194 MsG0880047356.01.T01:intron 45.0%
!! TAAAACCGGCTTGTAAGGTG+AGG + Chr8:85212174-85212193 MsG0880047356.01.T01:intron 45.0%
!! TGATTGGTCTCCGCAGTATT+CGG + Chr8:85212860-85212879 MsG0880047356.01.T01:intron 45.0%
!!! GGACTTTTTGAGACAGTTGG+AGG - Chr8:85213035-85213054 None:intergenic 45.0%
ACTCTTGAAGTCAGTCCAGG+AGG + Chr8:85213730-85213749 MsG0880047356.01.T01:intron 50.0%
ACTGCGGAGACCAATCAATG+AGG - Chr8:85212857-85212876 None:intergenic 50.0%
ACTGTTGACCAGTACGACAC+AGG - Chr8:85211526-85211545 None:intergenic 50.0%
AGGCTTTGCCATCGATAAGC+TGG - Chr8:85213492-85213511 None:intergenic 50.0%
CACCCGATACAATGAAGGTG+TGG + Chr8:85212265-85212284 MsG0880047356.01.T01:intron 50.0%
CCGCTAATCCAGCTTATCGA+TGG + Chr8:85213481-85213500 MsG0880047356.01.T01:intron 50.0%
CCTACAAGAGCTGCGTGATA+AGG - Chr8:85214555-85214574 None:intergenic 50.0%
CCTTATCACGCAGCTCTTGT+AGG + Chr8:85214552-85214571 MsG0880047356.01.T01:CDS 50.0%
CTGAAGCAGAAAGGATTCCC+TGG - Chr8:85213447-85213466 None:intergenic 50.0%
CTGCGGAGACCAATCAATGA+GGG - Chr8:85212856-85212875 None:intergenic 50.0%
GAACACTCTTGCGATGGAAG+AGG + Chr8:85211733-85211752 MsG0880047356.01.T01:CDS 50.0%
GCAGGAGAGGCAAAATAGCA+TGG - Chr8:85210663-85210682 None:intergenic 50.0%
GCATGTCATTCGGCAAAACC+TGG - Chr8:85213627-85213646 None:intergenic 50.0%
GCTTTATAGCGCTCCTTTGG+AGG + Chr8:85210877-85210896 MsG0880047356.01.T01:intron 50.0%
GTAAGTGATGAACCCCTGGA+AGG - Chr8:85211446-85211465 None:intergenic 50.0%
GTTGGGGAAGACTGCAATGA+AGG + Chr8:85212327-85212346 MsG0880047356.01.T01:intron 50.0%
TACTGGGAATAACGCAGGAG+AGG - Chr8:85210676-85210695 None:intergenic 50.0%
TGGAGAGTTGGAGCCTTACA+AGG + Chr8:85210486-85210505 MsG0880047356.01.T01:CDS 50.0%
! CCGATACAATGAAGGTGTGG+AGG + Chr8:85212268-85212287 MsG0880047356.01.T01:intron 50.0%
!! AAAGCTCTGAATCGTCCTGC+AGG + Chr8:85210698-85210717 MsG0880047356.01.T01:intron 50.0%
!! AAGAGTGTTCTGTGCCTGAG+AGG - Chr8:85211723-85211742 None:intergenic 50.0%
!! GAAAAGTTGCAGTACCGGTC+TGG + Chr8:85211552-85211571 MsG0880047356.01.T01:intron 50.0%
AAGGGATGCAGGTGCTCCAA+AGG - Chr8:85211476-85211495 None:intergenic 55.0%
AGTACGACACAGGACTGTCC+CGG - Chr8:85211516-85211535 None:intergenic 55.0%
CCCTGGAAGGACAACCAATC+CGG - Chr8:85211433-85211452 None:intergenic 55.0%
GGCACAGAACACTCTTGCGA+TGG + Chr8:85211727-85211746 MsG0880047356.01.T01:intron 55.0%
TTGTATCGGGTGTGAAGGGG+TGG - Chr8:85212257-85212276 None:intergenic 55.0%
! GGTTGATGCCAACAGGAACC+AGG + Chr8:85214079-85214098 MsG0880047356.01.T01:CDS 55.0%
! TTTGGAGCACCTGCATCCCT+TGG + Chr8:85211475-85211494 MsG0880047356.01.T01:intron 55.0%
!! ACCGGATTGGTTGTCCTTCC+AGG + Chr8:85211429-85211448 MsG0880047356.01.T01:CDS 55.0%
!! ACGCGGCTTCTGATTTGCTG+TGG + Chr8:85212782-85212801 MsG0880047356.01.T01:intron 55.0%
!! CCGGATTGGTTGTCCTTCCA+GGG + Chr8:85211430-85211449 MsG0880047356.01.T01:CDS 55.0%
!! CGCGGCTTCTGATTTGCTGT+GGG + Chr8:85212783-85212802 MsG0880047356.01.T01:intron 55.0%
!! CGGATTGGTTGTCCTTCCAG+GGG + Chr8:85211431-85211450 MsG0880047356.01.T01:CDS 55.0%
CTCAAAAGCCACGGACCTGC+AGG - Chr8:85210716-85210735 None:intergenic 60.0%
GCAGCCCTCACCTTACAAGC+CGG - Chr8:85212182-85212201 None:intergenic 60.0%
GGGACAGTCCTGTGTCGTAC+TGG + Chr8:85211515-85211534 MsG0880047356.01.T01:intron 60.0%
TGAATCGTCCTGCAGGTCCG+TGG + Chr8:85210705-85210724 MsG0880047356.01.T01:intron 60.0%
CGACACAGGACTGTCCCGGA+TGG - Chr8:85211512-85211531 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 85210478 85214638 85210478 ID=MsG0880047356.01;Name=MsG0880047356.01
Chr8 mRNA 85210478 85214638 85210478 ID=MsG0880047356.01.T01;Parent=MsG0880047356.01;Name=MsG0880047356.01.T01;_AED=0.48;_eAED=0.49;_QI=0|0.5|0.57|1|1|1|7|0|234
Chr8 exon 85210478 85210692 85210478 ID=MsG0880047356.01.T01:exon:34493;Parent=MsG0880047356.01.T01
Chr8 exon 85211389 85211452 85211389 ID=MsG0880047356.01.T01:exon:34494;Parent=MsG0880047356.01.T01
Chr8 exon 85211728 85211814 85211728 ID=MsG0880047356.01.T01:exon:34495;Parent=MsG0880047356.01.T01
Chr8 exon 85212662 85212724 85212662 ID=MsG0880047356.01.T01:exon:34496;Parent=MsG0880047356.01.T01
Chr8 exon 85213628 85213678 85213628 ID=MsG0880047356.01.T01:exon:34497;Parent=MsG0880047356.01.T01
Chr8 exon 85214023 85214100 85214023 ID=MsG0880047356.01.T01:exon:34498;Parent=MsG0880047356.01.T01
Chr8 exon 85214492 85214638 85214492 ID=MsG0880047356.01.T01:exon:34499;Parent=MsG0880047356.01.T01
Chr8 CDS 85210478 85210692 85210478 ID=MsG0880047356.01.T01:cds;Parent=MsG0880047356.01.T01
Chr8 CDS 85211389 85211452 85211389 ID=MsG0880047356.01.T01:cds;Parent=MsG0880047356.01.T01
Chr8 CDS 85211728 85211814 85211728 ID=MsG0880047356.01.T01:cds;Parent=MsG0880047356.01.T01
Chr8 CDS 85212662 85212724 85212662 ID=MsG0880047356.01.T01:cds;Parent=MsG0880047356.01.T01
Chr8 CDS 85213628 85213678 85213628 ID=MsG0880047356.01.T01:cds;Parent=MsG0880047356.01.T01
Chr8 CDS 85214023 85214100 85214023 ID=MsG0880047356.01.T01:cds;Parent=MsG0880047356.01.T01
Chr8 CDS 85214492 85214638 85214492 ID=MsG0880047356.01.T01:cds;Parent=MsG0880047356.01.T01
Gene Sequence

>MsG0880047356.01.T01

ATGGTTGATGGAGAGTTGGAGCCTTACAAGGAGAAAATCGATCATGACAGCGTTGTGCTTACCGAGCATGAAATTGATAGGACAACAGCAAAAGAAGAATCTGGCCCTACAATTTCTGAAGACAATGATCAGTATGGAGATGCTTTTGCCACCAATAAAGAATTAGAAGATCGGAATTTACCCCATGCTATTTTGCCTCTCCTGCGTTATTCCCAGAAAATGACCATGGACCACTACAAATTATATGCGAGTATTACCGGATTGGTTGTCCTTCCAGGGGCACAGAACACTCTTGCGATGGAAGAGGCAACTTCGTTATCTGTATGGACTACTGCTTGCTTATGTGGTACCTTGAGACTCGAAAATGTGTTAACATTCTTAGCAGGAATTTTGCTGGAGAAGCAGATAGTTGTTGCCTGCTCTAATTTGGTTTTGCCGAATGACATGCTTGAGTTTTTAGATGCACCTGTCCCTTATATAGTTGGTATCAAGAACATGACCAGTGAAGTCCAGTCAAAGTTTACCAATGTTATTGTGGTTGATGCCAACAGGAACCAGGTGAAATCACCAACAATACCACAACTGCCAAGACAGAAAGAGCTAATATCTTCTTTACGCCCTTATCACGCAGCTCTTGTAGGAGAAAGTTACTTGGGAAGGAGAAGGCCAGTGTATGAATGCACAGAAGTGCAGGTGTGCCCTTAA
Protein sequence

>MsG0880047356.01.T01

MVDGELEPYKEKIDHDSVVLTEHEIDRTTAKEESGPTISEDNDQYGDAFATNKELEDRNLPHAILPLLRYSQKMTMDHYKLYASITGLVVLPGAQNTLAMEEATSLSVWTTACLCGTLRLENVLTFLAGILLEKQIVVACSNLVLPNDMLEFLDAPVPYIVGIKNMTSEVQSKFTNVIVVDANRNQVKSPTIPQLPRQKELISSLRPYHAALVGESYLGRRRPVYECTEVQVCP*