AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047541.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047541.01.T01 MTR_4g129500 95.846 337 13 1 79 414 48 384 0.0 672
MsG0880047541.01.T01 MTR_4g129500 95.846 337 13 1 79 414 198 534 0.0 670
MsG0880047541.01.T01 MTR_4g129500 87.209 86 10 1 1 86 1 85 1.66e-45 165
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047541.01.T01 AT5G14850 66.962 339 99 3 79 408 52 386 2.40e-162 462
MsG0880047541.01.T01 AT5G14850 66.962 339 99 3 79 408 52 386 2.40e-162 462
MsG0880047541.01.T01 AT5G14850 66.962 339 99 3 79 408 127 461 2.37e-161 462
MsG0880047541.01.T01 AT5G14850 66.962 339 99 3 79 408 208 542 7.43e-160 461
MsG0880047541.01.T01 AT5G14850 63.333 60 22 0 27 86 37 96 1.08e-20 94.7
MsG0880047541.01.T01 AT5G14850 65.312 320 98 3 79 389 208 523 7.96e-146 425
MsG0880047541.01.T01 AT5G14850 60.317 63 25 0 24 86 34 96 1.01e-20 94.7
MsG0880047541.01.T01 AT5G14850 65.823 316 95 3 79 385 208 519 3.70e-145 423
MsG0880047541.01.T01 AT5G14850 60.317 63 25 0 24 86 34 96 9.77e-21 94.7

Find 93 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTCTCTAAAATGACTTTA+TGG 0.157606 8:-87841894 MsG0880047541.01.T01:three_prime_UTR
GAATCTGATTTCGGGAAATT+TGG 0.163689 8:+87845257 None:intergenic
CGTTTATCTGAATCTGATTT+CGG 0.205044 8:+87845248 None:intergenic
GATGTTCTCTGGTTATTCTT+TGG 0.230709 8:-87842883 MsG0880047541.01.T01:CDS
TTGGGTTTCTATAGTATATT+AGG 0.235925 8:-87843050 MsG0880047541.01.T01:CDS
TGTCAAAATTTGCACAAAAT+TGG 0.248440 8:-87842249 MsG0880047541.01.T01:CDS
TCCTCGGGCGGAGACTATTA+TGG 0.249851 8:-87843200 MsG0880047541.01.T01:CDS
GTTTATCTGAATCTGATTTC+GGG 0.252705 8:+87845249 None:intergenic
CTTAACATGGGAATGGAAAC+TGG 0.268191 8:-87845102 MsG0880047541.01.T01:CDS
ATACAAAGCCATTGGTATAT+TGG 0.306781 8:+87842749 None:intergenic
AATGGCTTTGTATATGAGTT+TGG 0.314530 8:-87842739 MsG0880047541.01.T01:CDS
CAGCATTAGCTTGTGCTATT+AGG 0.315699 8:-87844210 MsG0880047541.01.T01:CDS
GGCCTCCTTGCATGGGTGTT+GGG 0.319910 8:-87843068 MsG0880047541.01.T01:CDS
ATTTCGGGAAATTTGGAGTT+TGG 0.325419 8:+87845264 None:intergenic
GGACCTTGCCAGTGTTCATC+TGG 0.334609 8:+87845161 None:intergenic
GCCAGAAAACTTCCACTGTT+TGG 0.338165 8:+87843088 None:intergenic
TATTAGGCCACAAGGAATTC+AGG 0.347741 8:-87843034 MsG0880047541.01.T01:intron
TCTATCAGGACCTTGGTACT+TGG 0.350812 8:-87843302 MsG0880047541.01.T01:intron
ATGATACCAGCTATACAAAA+TGG 0.354192 8:+87843116 None:intergenic
CATCTGATCTGTGCAGTAAA+TGG 0.362706 8:-87841971 MsG0880047541.01.T01:exon
GCGATTCGATGTGCAACTTC+AGG 0.377588 8:+87845140 None:intergenic
GTATATGAGTTTGGTTCATC+AGG 0.382136 8:-87842730 MsG0880047541.01.T01:intron
CCCATAGCTCTGATGTTCTC+TGG 0.385056 8:-87842894 MsG0880047541.01.T01:CDS
TGGCCTCCTTGCATGGGTGT+TGG 0.391471 8:-87843069 MsG0880047541.01.T01:CDS
TAAGATAGCAACTGTCATCT+TGG 0.397152 8:+87842785 None:intergenic
TGATGCAGCATAGAGTAGTA+TGG 0.398684 8:+87842456 None:intergenic
TCCTTTATACTCCAGGGAAC+CGG 0.399713 8:+87842839 None:intergenic
GCCGGTTCCCTGGAGTATAA+AGG 0.417522 8:-87842840 MsG0880047541.01.T01:CDS
ATACTCCAGGGAACCGGCAC+CGG 0.421158 8:+87842845 None:intergenic
ATCAAACAAAACAACGTGGC+TGG 0.422442 8:+87842219 None:intergenic
AGATCCCGGTGCCGGTTCCC+TGG 0.431578 8:-87842850 MsG0880047541.01.T01:CDS
ATCAGAGCTATGGGAAGAAC+TGG 0.435949 8:+87842903 None:intergenic
CTATCAGGACCTTGGTACTT+GGG 0.437453 8:-87843301 MsG0880047541.01.T01:intron
CATGGCAAGGTGTTAAGAAT+AGG 0.438730 8:+87842484 None:intergenic
AAATTACAACAGATAACATT+AGG 0.445283 8:+87841918 None:intergenic
TCCCTGGAGTATAAAGGAAA+AGG 0.446458 8:-87842834 MsG0880047541.01.T01:CDS
ATCCATGTGACTGCACTTGT+TGG 0.452781 8:+87844187 None:intergenic
CCCTGGAGTATAAAGGAAAA+GGG 0.452844 8:-87842833 MsG0880047541.01.T01:CDS
CATCGAATCGCATTCGGATA+CGG 0.455366 8:-87845128 MsG0880047541.01.T01:CDS
GTTTGGAGTTTATTTGTTTG+TGG 0.457608 8:+87845281 None:intergenic
GTATCGTGACCGTTCATTGT+TGG 0.465232 8:-87841946 MsG0880047541.01.T01:three_prime_UTR
GTTGCACATCGAATCGCATT+CGG 0.469594 8:-87845134 MsG0880047541.01.T01:CDS
ACAAAACAACGTGGCTGGGA+AGG 0.471161 8:+87842224 None:intergenic
AAGATAGCAACTGTCATCTT+GGG 0.472644 8:+87842786 None:intergenic
TTCGAAATGCTAAGCAGAAA+AGG 0.475603 8:+87845219 None:intergenic
ACCAGAGAACATCAGAGCTA+TGG 0.481665 8:+87842893 None:intergenic
GAAGTACCAGTGCCACTTGT+GGG 0.489262 8:+87843175 None:intergenic
TACTCCAGGGAACCGGCACC+GGG 0.490194 8:+87842846 None:intergenic
GTTGCATTCTATCAGGACCT+TGG 0.495789 8:-87843309 MsG0880047541.01.T01:intron
GGTTTGAAAACATACCCAAT+AGG 0.504539 8:+87844097 None:intergenic
CCAGAGAACATCAGAGCTAT+GGG 0.508194 8:+87842894 None:intergenic
TCGGATACGGTCACTTAACA+TGG 0.508686 8:-87845115 MsG0880047541.01.T01:CDS
AGGTGGTTCATGACATCCTC+AGG 0.515882 8:+87842543 None:intergenic
GTGATTGAAGATCCCGGTGC+CGG 0.538653 8:-87842858 MsG0880047541.01.T01:CDS
GCTTGCTACCAATATACCAA+TGG 0.538794 8:-87842757 MsG0880047541.01.T01:CDS
ATGGAACCCACAAGTGGCAC+TGG 0.538917 8:-87843181 MsG0880047541.01.T01:CDS
GTGGCACTGGTACTTCACTC+AGG 0.542210 8:-87843168 MsG0880047541.01.T01:CDS
TCAAACAAAACAACGTGGCT+GGG 0.545075 8:+87842220 None:intergenic
CTTGAAAAGCTTCTCTAGCA+AGG 0.548765 8:+87842523 None:intergenic
CATTTACTGCACAGATCAGA+TGG 0.557333 8:+87841972 None:intergenic
CAAAACAACGTGGCTGGGAA+GGG 0.558369 8:+87842225 None:intergenic
ACGGTCACTTAACATGGGAA+TGG 0.565404 8:-87845109 MsG0880047541.01.T01:CDS
GGCCAACAAGTGCAGTCACA+TGG 0.566459 8:-87844189 MsG0880047541.01.T01:CDS
AAACTCATATACAAAGCCAT+TGG 0.568797 8:+87842741 None:intergenic
TTGGCTGTGATTGAAGATCC+CGG 0.570450 8:-87842864 MsG0880047541.01.T01:CDS
TGAGTCTGACCGTTTCATGA+TGG 0.575450 8:-87842287 MsG0880047541.01.T01:CDS
AATTTCATTTGAATATAGAG+AGG 0.576739 8:-87842167 MsG0880047541.01.T01:intron
TTAACATGGGAATGGAAACT+GGG 0.577353 8:-87845101 MsG0880047541.01.T01:intron
ATGCAGGGTCCATCATGAAA+CGG 0.579078 8:+87842278 None:intergenic
GTGCAGTCAAGAAACTGCAT+TGG 0.579548 8:+87842426 None:intergenic
CTATAGTATATTAGGCCACA+AGG 0.580226 8:-87843042 MsG0880047541.01.T01:CDS
ACTTTAATCCAGATGAACAC+TGG 0.616712 8:-87845169 MsG0880047541.01.T01:CDS
TGAAATACCTGAATTCCTTG+TGG 0.619134 8:+87843027 None:intergenic
AGTTTCTTGACTGCACGCCA+AGG 0.620630 8:-87842419 MsG0880047541.01.T01:intron
GCAGTCACATGGATGTATGT+TGG 0.621019 8:-87844178 MsG0880047541.01.T01:CDS
GTATCATTTATTCCAAACAG+TGG 0.626046 8:-87843100 MsG0880047541.01.T01:CDS
TTCTCAACAGAGAGGACCTG+AGG 0.626474 8:-87842559 MsG0880047541.01.T01:intron
TGGCACTGGTACTTCACTCA+GGG 0.630537 8:-87843167 MsG0880047541.01.T01:CDS
TGAAGTACCAGTGCCACTTG+TGG 0.632573 8:+87843174 None:intergenic
TAGTATGGAGTAGCATGGCA+AGG 0.633651 8:+87842471 None:intergenic
TAGGAACAACCAACAATGAA+CGG 0.635572 8:+87841937 None:intergenic
AGAAACCCAACACCCATGCA+AGG 0.635662 8:+87843063 None:intergenic
TAGAGTAGTATGGAGTAGCA+TGG 0.637302 8:+87842466 None:intergenic
ATAGCAACTGTCATCTTGGG+AGG 0.639862 8:+87842789 None:intergenic
TCCATAATAGTCTCCGCCCG+AGG 0.642363 8:+87843199 None:intergenic
AATCCAGATGAACACTGGCA+AGG 0.654714 8:-87845164 MsG0880047541.01.T01:CDS
ACTATTATGGAACCCACAAG+TGG 0.657552 8:-87843187 MsG0880047541.01.T01:CDS
GCAGGTAAGCCCAAGTACCA+AGG 0.664262 8:+87843292 None:intergenic
CGGATACGGTCACTTAACAT+GGG 0.671958 8:-87845114 MsG0880047541.01.T01:CDS
CAACTGAAGCTTGAAGATCA+CGG 0.684725 8:+87842019 None:intergenic
GAAAAGCTTCTCTAGCAAGG+TGG 0.694680 8:+87842526 None:intergenic
AACCCAACACCCATGCAAGG+AGG 0.726198 8:+87843066 None:intergenic
CCGAATCAAACAAAACAACG+TGG 0.748520 8:+87842215 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAATCTTAATTATTAAT+TGG - Chr8:87843745-87843764 MsG0880047541.01.T01:intron 10.0%
!!! TTATTAGATTTTTTTATGTA+TGG - Chr8:87843853-87843872 MsG0880047541.01.T01:intron 10.0%
!! AAATCAATAATTTGAATACT+TGG + Chr8:87844436-87844455 None:intergenic 15.0%
!!! CAAAAAAAGTTATGTTTTTA+TGG - Chr8:87843574-87843593 MsG0880047541.01.T01:intron 15.0%
!!! TAATTAAGATTTTTGCAAAT+TGG + Chr8:87843740-87843759 None:intergenic 15.0%
!!! TTGAATTTTAGAAAATTAAG+TGG + Chr8:87843895-87843914 None:intergenic 15.0%
!! AAATTACAACAGATAACATT+AGG + Chr8:87845207-87845226 None:intergenic 20.0%
!! AATTAAGAAAGTAAATCTAC+TGG + Chr8:87843645-87843664 None:intergenic 20.0%
!! AATTTCATTTGAATATAGAG+AGG - Chr8:87844955-87844974 MsG0880047541.01.T01:intron 20.0%
!! ATATCTAAGAAACATAGTTA+AGG + Chr8:87842730-87842749 None:intergenic 20.0%
!! CATAAAAAAATCTAATAAGC+AGG + Chr8:87843851-87843870 None:intergenic 20.0%
!! CATATAATGTATGTTTAGAT+AGG - Chr8:87842258-87842277 MsG0880047541.01.T01:CDS 20.0%
!! CATGTATTGTGAATTAATAA+CGG + Chr8:87843115-87843134 None:intergenic 20.0%
!! TAATAATTACCATAAACCAA+GGG + Chr8:87842119-87842138 None:intergenic 20.0%
!! TCTTATTATTTGGATACAAA+AGG + Chr8:87843314-87843333 None:intergenic 20.0%
!! TGTATCCAAATAATAAGATT+TGG - Chr8:87843316-87843335 MsG0880047541.01.T01:intron 20.0%
!! TTAACAATGTTGTCAAATAA+CGG - Chr8:87843053-87843072 MsG0880047541.01.T01:CDS 20.0%
!! TTAATAATTACCATAAACCA+AGG + Chr8:87842120-87842139 None:intergenic 20.0%
!! TTGACAACATTGTTAATAAA+TGG + Chr8:87843049-87843068 None:intergenic 20.0%
!!! AAAATTCAATTTTCTTTCCT+CGG - Chr8:87843906-87843925 MsG0880047541.01.T01:intron 20.0%
!!! CTTATTTTTCTATAAGTTCA+TGG + Chr8:87842362-87842381 None:intergenic 20.0%
!!! TAATTTGAAATTTCATCTAC+AGG - Chr8:87845046-87845065 MsG0880047541.01.T01:intron 20.0%
! AATAATTACCATAAACCAAG+GGG + Chr8:87842118-87842137 None:intergenic 25.0%
! ACATAGAATTAGTACATGTT+CGG + Chr8:87842495-87842514 None:intergenic 25.0%
! ATAATGTATGTTTAGATAGG+CGG - Chr8:87842261-87842280 MsG0880047541.01.T01:CDS 25.0%
! ATTAATCAAGTCAAACCAAT+AGG + Chr8:87844160-87844179 None:intergenic 25.0%
! ATTAGTAATTACTGAGATAC+AGG - Chr8:87844187-87844206 MsG0880047541.01.T01:CDS 25.0%
! GAATCATTAATTCTAAACCT+TGG + Chr8:87844723-87844742 None:intergenic 25.0%
! GCTAACCAAATCTTATTATT+TGG + Chr8:87843324-87843343 None:intergenic 25.0%
! GTGCAATACAATAAATTTCA+AGG + Chr8:87843385-87843404 None:intergenic 25.0%
! TATCACTAGAACTCAAATTA+TGG - Chr8:87843483-87843502 MsG0880047541.01.T01:intron 25.0%
! TGTCAAAATTTGCACAAAAT+TGG - Chr8:87844873-87844892 MsG0880047541.01.T01:intron 25.0%
! TTGGGTTTCTATAGTATATT+AGG - Chr8:87844072-87844091 MsG0880047541.01.T01:intron 25.0%
!! AAATTCAATTTTCTTTCCTC+GGG - Chr8:87843907-87843926 MsG0880047541.01.T01:intron 25.0%
!! AGGTTTAGAATTAATGATTC+TGG - Chr8:87844723-87844742 MsG0880047541.01.T01:intron 25.0%
!! TATCTGTCTACAAAATTTTC+TGG + Chr8:87845275-87845294 None:intergenic 25.0%
!! TATTTACCATTTTGTATAGC+TGG - Chr8:87844000-87844019 MsG0880047541.01.T01:intron 25.0%
!! TCTGTATGTTTTCAAAATCA+CGG - Chr8:87843536-87843555 MsG0880047541.01.T01:intron 25.0%
!! TTTAGAGCAAAGATTAACTT+TGG + Chr8:87844997-87845016 None:intergenic 25.0%
!!! ATGTCTCTAAAATGACTTTA+TGG - Chr8:87845228-87845247 MsG0880047541.01.T01:CDS 25.0%
!!! ATTTTTTAATGCTCACTTCA+AGG - Chr8:87845076-87845095 MsG0880047541.01.T01:intron 25.0%
!!! ATTTTTTTATGTATGGCACA+TGG - Chr8:87843860-87843879 MsG0880047541.01.T01:intron 25.0%
!!! GTATTGTTTTTCTTAGATGA+GGG - Chr8:87842513-87842532 MsG0880047541.01.T01:CDS 25.0%
!!! TATTTATTTTCTCAACAGAG+AGG - Chr8:87844555-87844574 MsG0880047541.01.T01:intron 25.0%
!!! TCTAATTTGATTTTGACCTA+GGG - Chr8:87843202-87843221 MsG0880047541.01.T01:CDS 25.0%
!!! TGTATTGTTTTTCTTAGATG+AGG - Chr8:87842512-87842531 MsG0880047541.01.T01:CDS 25.0%
!!! TTAATCTTTGCTCTAAAAAC+TGG - Chr8:87845000-87845019 MsG0880047541.01.T01:intron 25.0%
!!! TTTTTTTATGTATGGCACAT+GGG - Chr8:87843861-87843880 MsG0880047541.01.T01:intron 25.0%
AAACTCATATACAAAGCCAT+TGG + Chr8:87844384-87844403 None:intergenic 30.0%
AATGCGAGAAAATTGTAAAG+AGG + Chr8:87842081-87842100 None:intergenic 30.0%
AGTGAAACTCTTCAATTGAA+TGG + Chr8:87843346-87843365 None:intergenic 30.0%
ATACAAAGCCATTGGTATAT+TGG + Chr8:87844376-87844395 None:intergenic 30.0%
ATCCAATGAGATAAAACAGT+AGG + Chr8:87842641-87842660 None:intergenic 30.0%
ATGATACCAGCTATACAAAA+TGG + Chr8:87844009-87844028 None:intergenic 30.0%
CGTTTATCTGAATCTGATTT+CGG + Chr8:87841877-87841896 None:intergenic 30.0%
GTATCATTTATTCCAAACAG+TGG - Chr8:87844022-87844041 MsG0880047541.01.T01:intron 30.0%
GTTTATCTGAATCTGATTTC+GGG + Chr8:87841876-87841895 None:intergenic 30.0%
TAAAGAGGAACAAAGAGAAA+TGG + Chr8:87842066-87842085 None:intergenic 30.0%
TGAACTTTGAATAACTCCAT+TGG - Chr8:87843687-87843706 MsG0880047541.01.T01:intron 30.0%
TTAGTTTCGACTAAGATTAG+AGG + Chr8:87844754-87844773 None:intergenic 30.0%
TTATTCAAAGTTCACTTGGA+AGG + Chr8:87843681-87843700 None:intergenic 30.0%
TTGTCAAATAACGGCTATAT+CGG - Chr8:87843062-87843081 MsG0880047541.01.T01:CDS 30.0%
! ATCCTACTGTTTTATCTCAT+TGG - Chr8:87842636-87842655 MsG0880047541.01.T01:intron 30.0%
! CAAATTGGTAGTTCCTAAAA+TGG + Chr8:87843725-87843744 None:intergenic 30.0%
! GATGGAAATTCAACCATTTT+AGG - Chr8:87843709-87843728 MsG0880047541.01.T01:intron 30.0%
! GTCTAGATTTTTACAGAAAC+AGG + Chr8:87844480-87844499 None:intergenic 30.0%
! GTTTGGAGTTTATTTGTTTG+TGG + Chr8:87841844-87841863 None:intergenic 30.0%
! TATTTCTGTTGCATTCTATC+AGG - Chr8:87843806-87843825 MsG0880047541.01.T01:intron 30.0%
!! AATGGCTTTGTATATGAGTT+TGG - Chr8:87844383-87844402 MsG0880047541.01.T01:intron 30.0%
!! AATTTTGACATAAACGATGC+AGG + Chr8:87844863-87844882 None:intergenic 30.0%
!! ATTTTGACATAAACGATGCA+GGG + Chr8:87844862-87844881 None:intergenic 30.0%
!! CTCTAATTTGATTTTGACCT+AGG - Chr8:87843201-87843220 MsG0880047541.01.T01:CDS 30.0%
!!! ATTGGAGTTTGTTTTTTTGG+AGG - Chr8:87842997-87843016 MsG0880047541.01.T01:intron 30.0%
!!! CAGATTGGAGTTTGTTTTTT+TGG - Chr8:87842994-87843013 MsG0880047541.01.T01:intron 30.0%
AAATCTACTGGACAAGAAGA+GGG + Chr8:87843633-87843652 None:intergenic 35.0%
AACGTGTTTAGAAAGCTTCA+TGG - Chr8:87843236-87843255 MsG0880047541.01.T01:CDS 35.0%
AAGATAGCAACTGTCATCTT+GGG + Chr8:87844339-87844358 None:intergenic 35.0%
ACTTTAATCCAGATGAACAC+TGG - Chr8:87841953-87841972 MsG0880047541.01.T01:three_prime_UTR 35.0%
ATGGTTGAATTTCCATCCAA+TGG + Chr8:87843706-87843725 None:intergenic 35.0%
CCTTGTATGAGAACTTATGT+GGG - Chr8:87842848-87842867 MsG0880047541.01.T01:CDS 35.0%
CTATAGTATATTAGGCCACA+AGG - Chr8:87844080-87844099 MsG0880047541.01.T01:intron 35.0%
CTTGTATGAGAACTTATGTG+GGG - Chr8:87842849-87842868 MsG0880047541.01.T01:CDS 35.0%
CTTTGAATAACTCCATTGGA+TGG - Chr8:87843691-87843710 MsG0880047541.01.T01:intron 35.0%
GAAGCTTTCTAAACACGTTA+GGG + Chr8:87843235-87843254 None:intergenic 35.0%
GAATCTGATTTCGGGAAATT+TGG + Chr8:87841868-87841887 None:intergenic 35.0%
GATGTTCTCTGGTTATTCTT+TGG - Chr8:87844239-87844258 MsG0880047541.01.T01:intron 35.0%
GGAGTTATTCAAAGTTCACT+TGG + Chr8:87843685-87843704 None:intergenic 35.0%
GGTTTGAAAACATACCCAAT+AGG + Chr8:87843028-87843047 None:intergenic 35.0%
GTACTTGTATAAACTCTCTG+CGG - Chr8:87842579-87842598 MsG0880047541.01.T01:intron 35.0%
TAAATCTACTGGACAAGAAG+AGG + Chr8:87843634-87843653 None:intergenic 35.0%
TAAGATAGCAACTGTCATCT+TGG + Chr8:87844340-87844359 None:intergenic 35.0%
TAGGAACAACCAACAATGAA+CGG + Chr8:87845188-87845207 None:intergenic 35.0%
TGAAATACCTGAATTCCTTG+TGG + Chr8:87844098-87844117 None:intergenic 35.0%
TGAAGCTTTCTAAACACGTT+AGG + Chr8:87843236-87843255 None:intergenic 35.0%
TTAACATGGGAATGGAAACT+GGG - Chr8:87842021-87842040 MsG0880047541.01.T01:CDS 35.0%
TTCGAAATGCTAAGCAGAAA+AGG + Chr8:87841906-87841925 None:intergenic 35.0%
! ATTTCGGGAAATTTGGAGTT+TGG + Chr8:87841861-87841880 None:intergenic 35.0%
! ATTTTCTGCAGTGAAGAGAA+AGG - Chr8:87844803-87844822 MsG0880047541.01.T01:intron 35.0%
! GTATATGAGTTTGGTTCATC+AGG - Chr8:87844392-87844411 MsG0880047541.01.T01:intron 35.0%
! TTGCTAGAGAAGCTTTTCAA+GGG - Chr8:87844601-87844620 MsG0880047541.01.T01:intron 35.0%
! TTTTAATGCTCACTTCAAGG+TGG - Chr8:87845079-87845098 MsG0880047541.01.T01:intron 35.0%
!!! CCACGTTGTTTTGTTTGATT+CGG - Chr8:87844907-87844926 MsG0880047541.01.T01:intron 35.0%
AAGAACAGTCTCCATGCTAT+TGG + Chr8:87842804-87842823 None:intergenic 40.0%
ACATAAACCAATTCGACAGC+TGG + Chr8:87842757-87842776 None:intergenic 40.0%
ACTATTATGGAACCCACAAG+TGG - Chr8:87843935-87843954 MsG0880047541.01.T01:intron 40.0%
ATCAAACAAAACAACGTGGC+TGG + Chr8:87844906-87844925 None:intergenic 40.0%
CAACTGAAGCTTGAAGATCA+CGG + Chr8:87845106-87845125 None:intergenic 40.0%
CATAAACCAATTCGACAGCT+GGG + Chr8:87842756-87842775 None:intergenic 40.0%
CATCTGATCTGTGCAGTAAA+TGG - Chr8:87845151-87845170 MsG0880047541.01.T01:CDS 40.0%
CATTTACTGCACAGATCAGA+TGG + Chr8:87845153-87845172 None:intergenic 40.0%
CCCACATAAGTTCTCATACA+AGG + Chr8:87842851-87842870 None:intergenic 40.0%
CCCTGGAGTATAAAGGAAAA+GGG - Chr8:87844289-87844308 MsG0880047541.01.T01:intron 40.0%
CCGAATCAAACAAAACAACG+TGG + Chr8:87844910-87844929 None:intergenic 40.0%
CGCTGGTGTCTTTATACTAT+TGG - Chr8:87842825-87842844 MsG0880047541.01.T01:CDS 40.0%
CTTAACATGGGAATGGAAAC+TGG - Chr8:87842020-87842039 MsG0880047541.01.T01:CDS 40.0%
CTTGAAAAGCTTCTCTAGCA+AGG + Chr8:87844602-87844621 None:intergenic 40.0%
GCCTTGTATGAGAACTTATG+TGG - Chr8:87842847-87842866 MsG0880047541.01.T01:CDS 40.0%
GGAAAAGTTCCTACGTTTCT+CGG - Chr8:87842870-87842889 MsG0880047541.01.T01:CDS 40.0%
TAATCCATCTTGATACCCCT+TGG - Chr8:87842100-87842119 MsG0880047541.01.T01:intron 40.0%
TAGAAAGCTTCATGGCACTA+GGG - Chr8:87843244-87843263 MsG0880047541.01.T01:CDS 40.0%
TAGAGTAGTATGGAGTAGCA+TGG + Chr8:87844659-87844678 None:intergenic 40.0%
TATTAGGCCACAAGGAATTC+AGG - Chr8:87844088-87844107 MsG0880047541.01.T01:intron 40.0%
TCAAACAAAACAACGTGGCT+GGG + Chr8:87844905-87844924 None:intergenic 40.0%
TCCCTGGAGTATAAAGGAAA+AGG - Chr8:87844288-87844307 MsG0880047541.01.T01:intron 40.0%
TCTTGATACCCCTTGGTTTA+TGG - Chr8:87842107-87842126 MsG0880047541.01.T01:intron 40.0%
TGATGCAGCATAGAGTAGTA+TGG + Chr8:87844669-87844688 None:intergenic 40.0%
TGGTCAATCGGTTGCAAAAT+GGG - Chr8:87842609-87842628 MsG0880047541.01.T01:intron 40.0%
TTAGAAAGCTTCATGGCACT+AGG - Chr8:87843243-87843262 MsG0880047541.01.T01:CDS 40.0%
TTGGTCAATCGGTTGCAAAA+TGG - Chr8:87842608-87842627 MsG0880047541.01.T01:intron 40.0%
! ACCCTTTTCCTTTATACTCC+AGG + Chr8:87844293-87844312 None:intergenic 40.0%
! CATGGCAAGGTGTTAAGAAT+AGG + Chr8:87844641-87844660 None:intergenic 40.0%
! CCCTTTTCCTTTATACTCCA+GGG + Chr8:87844292-87844311 None:intergenic 40.0%
! CTTGCTAGAGAAGCTTTTCA+AGG - Chr8:87844600-87844619 MsG0880047541.01.T01:intron 40.0%
! GCTTGCTACCAATATACCAA+TGG - Chr8:87844365-87844384 MsG0880047541.01.T01:intron 40.0%
! TATTTTCCCAGCTGTCGAAT+TGG - Chr8:87842747-87842766 MsG0880047541.01.T01:CDS 40.0%
! TCCAAACAGTGGAAGTTTTC+TGG - Chr8:87844033-87844052 MsG0880047541.01.T01:intron 40.0%
! TTCAATTTTCTTTCCTCGGG+CGG - Chr8:87843910-87843929 MsG0880047541.01.T01:intron 40.0%
! TTTTAATGCACGCGACAGAT+TGG - Chr8:87842979-87842998 MsG0880047541.01.T01:intron 40.0%
!! CAGCATTAGCTTGTGCTATT+AGG - Chr8:87842912-87842931 MsG0880047541.01.T01:CDS 40.0%
!! TAAACCAAGGGGTATCAAGA+TGG + Chr8:87842107-87842126 None:intergenic 40.0%
!!! GGAGTTTGTTTTTTTGGAGG+TGG - Chr8:87843000-87843019 MsG0880047541.01.T01:intron 40.0%
AAACTCTCTGCGGTTCTCTT+TGG - Chr8:87842589-87842608 MsG0880047541.01.T01:intron 45.0%
AACACAGACTGCAGTAACCT+TGG + Chr8:87842541-87842560 None:intergenic 45.0%
AATCCAGATGAACACTGGCA+AGG - Chr8:87841958-87841977 MsG0880047541.01.T01:three_prime_UTR 45.0%
ACCAGAGAACATCAGAGCTA+TGG + Chr8:87844232-87844251 None:intergenic 45.0%
ACGGTCACTTAACATGGGAA+TGG - Chr8:87842013-87842032 MsG0880047541.01.T01:CDS 45.0%
ACGTTAGGGAAAGTTTCCCT+AGG + Chr8:87843221-87843240 None:intergenic 45.0%
AGAAAGCTTCATGGCACTAG+GGG - Chr8:87843245-87843264 MsG0880047541.01.T01:CDS 45.0%
AGTCTGTGTTCTCTGCAGTT+GGG - Chr8:87842551-87842570 MsG0880047541.01.T01:CDS 45.0%
ATAGCAACTGTCATCTTGGG+AGG + Chr8:87844336-87844355 None:intergenic 45.0%
ATCAGAGCTATGGGAAGAAC+TGG + Chr8:87844222-87844241 None:intergenic 45.0%
ATCCATGTGACTGCACTTGT+TGG + Chr8:87842938-87842957 None:intergenic 45.0%
ATGCAGGGTCCATCATGAAA+CGG + Chr8:87844847-87844866 None:intergenic 45.0%
CATCGAATCGCATTCGGATA+CGG - Chr8:87841994-87842013 MsG0880047541.01.T01:CDS 45.0%
CATGCATGTTTACATGCACC+TGG - Chr8:87844134-87844153 MsG0880047541.01.T01:CDS 45.0%
CCAGAGAACATCAGAGCTAT+GGG + Chr8:87844231-87844250 None:intergenic 45.0%
CGCGTGCATTAAAAAGCTCA+AGG + Chr8:87842973-87842992 None:intergenic 45.0%
CGGATACGGTCACTTAACAT+GGG - Chr8:87842008-87842027 MsG0880047541.01.T01:CDS 45.0%
CTATCAGGACCTTGGTACTT+GGG - Chr8:87843821-87843840 MsG0880047541.01.T01:intron 45.0%
GAAAAGCTTCTCTAGCAAGG+TGG + Chr8:87844599-87844618 None:intergenic 45.0%
GCAGTCACATGGATGTATGT+TGG - Chr8:87842944-87842963 MsG0880047541.01.T01:intron 45.0%
GCCAGAAAACTTCCACTGTT+TGG + Chr8:87844037-87844056 None:intergenic 45.0%
GTATCGTGACCGTTCATTGT+TGG - Chr8:87845176-87845195 MsG0880047541.01.T01:CDS 45.0%
GTGCAGTCAAGAAACTGCAT+TGG + Chr8:87844699-87844718 None:intergenic 45.0%
GTTGCACATCGAATCGCATT+CGG - Chr8:87841988-87842007 MsG0880047541.01.T01:CDS 45.0%
GTTGCATTCTATCAGGACCT+TGG - Chr8:87843813-87843832 MsG0880047541.01.T01:intron 45.0%
TAGTATGGAGTAGCATGGCA+AGG + Chr8:87844654-87844673 None:intergenic 45.0%
TCAAGTCAAACCAATAGGCC+AGG + Chr8:87844155-87844174 None:intergenic 45.0%
TCCTTTATACTCCAGGGAAC+CGG + Chr8:87844286-87844305 None:intergenic 45.0%
TCGGAAGTGGGGTTTATTTG+TGG - Chr8:87842889-87842908 MsG0880047541.01.T01:CDS 45.0%
TCGGATACGGTCACTTAACA+TGG - Chr8:87842007-87842026 MsG0880047541.01.T01:CDS 45.0%
TCGTACACTGTCCAATAGCA+TGG - Chr8:87842790-87842809 MsG0880047541.01.T01:CDS 45.0%
TCTATCAGGACCTTGGTACT+TGG - Chr8:87843820-87843839 MsG0880047541.01.T01:intron 45.0%
TGAGTCTGACCGTTTCATGA+TGG - Chr8:87844835-87844854 MsG0880047541.01.T01:intron 45.0%
TGCGGTTCTCTTTGGTCAAT+CGG - Chr8:87842597-87842616 MsG0880047541.01.T01:intron 45.0%
TTCCTACGTTTCTCGGAAGT+GGG - Chr8:87842877-87842896 MsG0880047541.01.T01:CDS 45.0%
TTGGCTGTGATTGAAGATCC+CGG - Chr8:87844258-87844277 MsG0880047541.01.T01:intron 45.0%
TTTACATGCACCTGGCCTAT+TGG - Chr8:87844142-87844161 MsG0880047541.01.T01:CDS 45.0%
TTTCTTAGATGAGGGCTCCA+AGG - Chr8:87842521-87842540 MsG0880047541.01.T01:CDS 45.0%
!! TTTTGGAGGTGGCTCCTATT+GGG - Chr8:87843011-87843030 MsG0880047541.01.T01:intron 45.0%
!! TTTTTGGAGGTGGCTCCTAT+TGG - Chr8:87843010-87843029 MsG0880047541.01.T01:intron 45.0%
!! AAAAATCTTAATTATTAATT+GGG - Chr8:87843746-87843765 MsG0880047541.01.T01:intron 5.0%
!!! GTTAATTATTTTTTTTTTAA+AGG - Chr8:87844506-87844525 MsG0880047541.01.T01:intron 5.0%
ACAAAACAACGTGGCTGGGA+AGG + Chr8:87844901-87844920 None:intergenic 50.0%
AGAAACCCAACACCCATGCA+AGG + Chr8:87844062-87844081 None:intergenic 50.0%
AGGTGGTTCATGACATCCTC+AGG + Chr8:87844582-87844601 None:intergenic 50.0%
AGTTTCTTGACTGCACGCCA+AGG - Chr8:87844703-87844722 MsG0880047541.01.T01:intron 50.0%
CAAAACAACGTGGCTGGGAA+GGG + Chr8:87844900-87844919 None:intergenic 50.0%
CAGTCTGTGTTCTCTGCAGT+TGG - Chr8:87842550-87842569 MsG0880047541.01.T01:CDS 50.0%
CATGGAGACTGTTCTTACGC+TGG - Chr8:87842808-87842827 MsG0880047541.01.T01:CDS 50.0%
GCGATTCGATGTGCAACTTC+AGG + Chr8:87841985-87842004 None:intergenic 50.0%
GTCTGTGTTCTCTGCAGTTG+GGG - Chr8:87842552-87842571 MsG0880047541.01.T01:CDS 50.0%
GTTCCTACGTTTCTCGGAAG+TGG - Chr8:87842876-87842895 MsG0880047541.01.T01:CDS 50.0%
TCCTACGTTTCTCGGAAGTG+GGG - Chr8:87842878-87842897 MsG0880047541.01.T01:CDS 50.0%
TTCTCAACAGAGAGGACCTG+AGG - Chr8:87844563-87844582 MsG0880047541.01.T01:intron 50.0%
!! AGTTTTCTGGCCTCCTTGCA+TGG - Chr8:87844046-87844065 MsG0880047541.01.T01:intron 50.0%
!! CCCATAGCTCTGATGTTCTC+TGG - Chr8:87844228-87844247 MsG0880047541.01.T01:intron 50.0%
!! GAAGTACCAGTGCCACTTGT+GGG + Chr8:87843950-87843969 None:intergenic 50.0%
!! GTTTTCTGGCCTCCTTGCAT+GGG - Chr8:87844047-87844066 MsG0880047541.01.T01:intron 50.0%
!! TGAAGTACCAGTGCCACTTG+TGG + Chr8:87843951-87843970 None:intergenic 50.0%
!! TGGCACTGGTACTTCACTCA+GGG - Chr8:87843955-87843974 MsG0880047541.01.T01:intron 50.0%
AACCCAACACCCATGCAAGG+AGG + Chr8:87844059-87844078 None:intergenic 55.0%
ACCCCACTTCCGAGAAACGT+AGG + Chr8:87842882-87842901 None:intergenic 55.0%
ATGGAACCCACAAGTGGCAC+TGG - Chr8:87843941-87843960 MsG0880047541.01.T01:intron 55.0%
GCAGGTAAGCCCAAGTACCA+AGG + Chr8:87843833-87843852 None:intergenic 55.0%
GGACCTTGCCAGTGTTCATC+TGG + Chr8:87841964-87841983 None:intergenic 55.0%
GGCCAACAAGTGCAGTCACA+TGG - Chr8:87842933-87842952 MsG0880047541.01.T01:intron 55.0%
GTGATTGAAGATCCCGGTGC+CGG - Chr8:87844264-87844283 MsG0880047541.01.T01:intron 55.0%
TCCATAATAGTCTCCGCCCG+AGG + Chr8:87843926-87843945 None:intergenic 55.0%
TCCTCGGGCGGAGACTATTA+TGG - Chr8:87843922-87843941 MsG0880047541.01.T01:intron 55.0%
! GCCGGTTCCCTGGAGTATAA+AGG - Chr8:87844282-87844301 MsG0880047541.01.T01:intron 55.0%
!! GTGGCACTGGTACTTCACTC+AGG - Chr8:87843954-87843973 MsG0880047541.01.T01:intron 55.0%
ATACTCCAGGGAACCGGCAC+CGG + Chr8:87844280-87844299 None:intergenic 60.0%
GGCCTCCTTGCATGGGTGTT+GGG - Chr8:87844054-87844073 MsG0880047541.01.T01:intron 60.0%
TGGCCTCCTTGCATGGGTGT+TGG - Chr8:87844053-87844072 MsG0880047541.01.T01:intron 60.0%
TACTCCAGGGAACCGGCACC+GGG + Chr8:87844279-87844298 None:intergenic 65.0%
!! AGATCCCGGTGCCGGTTCCC+TGG - Chr8:87844272-87844291 MsG0880047541.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 87841808 87845336 87841808 ID=MsG0880047541.01;Name=MsG0880047541.01
Chr8 mRNA 87841808 87845336 87841808 ID=MsG0880047541.01.T01;Parent=MsG0880047541.01;Name=MsG0880047541.01.T01;_AED=0.36;_eAED=0.36;_QI=0|0.83|0.71|1|1|1|7|179|414
Chr8 exon 87841808 87842076 87841808 ID=MsG0880047541.01.T01:exon:18577;Parent=MsG0880047541.01.T01
Chr8 exon 87842168 87842330 87842168 ID=MsG0880047541.01.T01:exon:18576;Parent=MsG0880047541.01.T01
Chr8 exon 87842420 87842571 87842420 ID=MsG0880047541.01.T01:exon:18575;Parent=MsG0880047541.01.T01
Chr8 exon 87842731 87842935 87842731 ID=MsG0880047541.01.T01:exon:18574;Parent=MsG0880047541.01.T01
Chr8 exon 87843035 87843316 87843035 ID=MsG0880047541.01.T01:exon:18573;Parent=MsG0880047541.01.T01
Chr8 exon 87844112 87844229 87844112 ID=MsG0880047541.01.T01:exon:18572;Parent=MsG0880047541.01.T01
Chr8 exon 87845102 87845336 87845102 ID=MsG0880047541.01.T01:exon:18571;Parent=MsG0880047541.01.T01
Chr8 CDS 87845102 87845336 87845102 ID=MsG0880047541.01.T01:cds;Parent=MsG0880047541.01.T01
Chr8 CDS 87844112 87844229 87844112 ID=MsG0880047541.01.T01:cds;Parent=MsG0880047541.01.T01
Chr8 CDS 87843035 87843316 87843035 ID=MsG0880047541.01.T01:cds;Parent=MsG0880047541.01.T01
Chr8 CDS 87842731 87842935 87842731 ID=MsG0880047541.01.T01:cds;Parent=MsG0880047541.01.T01
Chr8 CDS 87842420 87842571 87842420 ID=MsG0880047541.01.T01:cds;Parent=MsG0880047541.01.T01
Chr8 CDS 87842168 87842330 87842168 ID=MsG0880047541.01.T01:cds;Parent=MsG0880047541.01.T01
Chr8 CDS 87841987 87842076 87841987 ID=MsG0880047541.01.T01:cds;Parent=MsG0880047541.01.T01
Chr8 three_prime_UTR 87841808 87841986 87841808 ID=MsG0880047541.01.T01:three_prime_utr;Parent=MsG0880047541.01.T01
Gene Sequence

>MsG0880047541.01.T01

ATGAGACGAAGACGCGACAATTACAAAGATGCACCACAAACAAATAAACTCCAAACTCCAAATTTCCCGAAATCAGATTCAGATAAACGAATCTTCCTTTTCTGCTTAGCATTTCGAATGCTGAATTCAATGCTAGTGCAGAGTTACTTTAATCCAGATGAACACTGGCAAGGTCCTGAAGTTGCACATCGAATCGCATTCGGATACGGTCACTTAACATGGGAATGGAAACTGGCATTAGCTTGTGCTATTAGGCCAACAAGTGCAGTCACATGGATGTATGTTGGTTTCCTTGAGCTTTTTAATGCACGCGACAGATTGGAGTTTGTTTTTTTGGAGGTGGCTCCTATTGGGACCTTGGTACTTGGGCTTACCTGCTTATTAGATTTTTTTATGTATGGCACATGGGTTCTAGTACCACTTAATTTTCTAAAATTCAATTTTCTTTCCTCGGGCGGAGACTATTATGGAACCCACAAGTGGCACTGGTACTTCACTCAGGGATTTACAGTCATGATTTTCTCTTATTTACCATTTTGTATAGCTGGTATCATTTATTCCAAACAGTGGAAGTTTTCTGGCCTCCTTGCATGGGTGTTGGGTTTCTATAGTATATTAGGCCACAAGGAATTCAGGTTCGTCTTGCCAGTTCTTCCCATAGCTCTGATGTTCTCTGGTTATTCTTTGGCTGTGATTGAAGATCCCGGTGCCGGTTCCCTGGAGTATAAAGGAAAAGGGTTTTCAAAAAAGAAAAAATGTCCTCCCAAGATGACAGTTGCTATCTTATTTTTGCTTGCTACCAATATACCAATGGCTTTGTATATGAGTTTGGTTCATCAGAGAGGACCTGAGGATGTCATGAACCACCTTGCTAGAGAAGCTTTTCAAGGGAACGTGAAAAGTATCCTATTCTTAACACCTTGCCATGCTACTCCATACTACTCTATGCTGCATCAAAATGTGCCAATGCAGTTTCTTGACTGCACGCCAAGTGAAGAGAAAGGAGTTCTAGATGAGTCTGACCGTTTCATGATGGACCCTGCATCGTTTATGTCAAAATTTGCACAAAATTGGTCCCTTCCCAGCCACGTTGTTTTGTTTGATTCGGAAGAGCAAAAGTTGAGAAGCTTTTTAATTTCATTTGAATATAGAGAGGAAAAAAGATTTTTTAATGCTCACTTCAAGGTGGACCGTGATCTTCAAGCTTCAGTTGTTGTATATGTTCAAAAAGATAGCACCATCTGA
Protein sequence

>MsG0880047541.01.T01

MRRRRDNYKDAPQTNKLQTPNFPKSDSDKRIFLFCLAFRMLNSMLVQSYFNPDEHWQGPEVAHRIAFGYGHLTWEWKLALACAIRPTSAVTWMYVGFLELFNARDRLEFVFLEVAPIGTLVLGLTCLLDFFMYGTWVLVPLNFLKFNFLSSGGDYYGTHKWHWYFTQGFTVMIFSYLPFCIAGIIYSKQWKFSGLLAWVLGFYSILGHKEFRFVLPVLPIALMFSGYSLAVIEDPGAGSLEYKGKGFSKKKKCPPKMTVAILFLLATNIPMALYMSLVHQRGPEDVMNHLAREAFQGNVKSILFLTPCHATPYYSMLHQNVPMQFLDCTPSEEKGVLDESDRFMMDPASFMSKFAQNWSLPSHVVLFDSEEQKLRSFLISFEYREEKRFFNAHFKVDRDLQASVVVYVQKDSTI*