AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047546.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047546.01.T01 MTR_4g129670 96.552 261 9 0 1 261 1 261 0.0 517
MsG0880047546.01.T01 MTR_4g061010 50.951 263 126 2 1 260 1 263 1.95e-83 251
MsG0880047546.01.T01 MTR_8g066790 45.833 264 140 2 1 264 1 261 2.33e-74 228
MsG0880047546.01.T01 MTR_6g033335 44.231 260 132 3 2 261 3 249 1.67e-73 226
MsG0880047546.01.T01 MTR_8g101600 42.045 264 150 2 1 264 1 261 8.81e-70 216
MsG0880047546.01.T01 MTR_1g095530 45.000 260 128 4 2 260 3 248 5.32e-67 209
MsG0880047546.01.T01 MTR_4g112570 39.544 263 157 2 2 263 5 266 1.57e-66 208
MsG0880047546.01.T01 MTR_8g097280 34.286 245 154 3 11 255 13 250 6.25e-58 187
MsG0880047546.01.T01 MTR_5g030070 44.697 264 143 2 1 264 1 261 6.62e-57 183
MsG0880047546.01.T01 MTR_2g056130 39.464 261 140 3 2 261 3 246 4.50e-55 178
MsG0880047546.01.T01 MTR_5g097460 41.016 256 127 4 2 255 48 281 2.61e-54 178
MsG0880047546.01.T01 MTR_5g097450 37.349 249 90 6 2 248 6 190 2.79e-36 128
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047546.01.T01 AT2G23810 65.152 264 92 0 2 265 3 266 1.71e-129 368
MsG0880047546.01.T01 AT4G28050 63.846 260 93 1 1 260 2 260 5.96e-126 359
MsG0880047546.01.T01 AT4G30430 58.238 261 108 1 1 261 2 261 4.13e-117 337
MsG0880047546.01.T01 AT3G45600 48.669 263 132 2 1 260 1 263 5.30e-90 268
MsG0880047546.01.T01 AT5G60220 47.529 263 135 2 1 260 1 263 1.56e-72 225
MsG0880047546.01.T01 AT1G18520 42.164 268 150 3 2 265 3 269 1.17e-71 221
MsG0880047546.01.T01 AT5G46700 46.212 264 139 2 1 264 1 261 1.91e-70 218
MsG0880047546.01.T01 AT3G12090 43.511 262 133 3 2 263 3 249 8.69e-69 214
MsG0880047546.01.T01 AT4G23410 40.377 265 144 3 2 266 3 253 2.08e-66 208
MsG0880047546.01.T01 AT2G19580 44.906 265 142 3 1 264 1 262 1.36e-64 203
MsG0880047546.01.T01 AT1G63260 36.576 257 154 3 1 257 3 250 8.95e-63 198
MsG0880047546.01.T01 AT1G63260 35.918 245 154 2 1 245 3 244 3.04e-60 192
MsG0880047546.01.T01 AT1G63260 35.918 245 154 2 1 245 3 244 3.04e-60 192
MsG0880047546.01.T01 AT1G63260 35.918 245 154 2 1 245 3 244 4.30e-60 192
MsG0880047546.01.T01 AT1G63260 35.616 219 138 2 1 219 3 218 6.42e-52 169
MsG0880047546.01.T01 AT3G45600 47.368 171 87 2 1 168 1 171 1.59e-49 162
MsG0880047546.01.T01 AT5G23030 35.385 260 162 2 1 259 2 256 3.11e-46 155
MsG0880047546.01.T01 AT1G63260 36.723 177 109 2 1 177 3 176 3.16e-41 141
MsG0880047546.01.T01 AT2G03840 29.278 263 182 2 1 263 19 277 2.59e-34 125
MsG0880047546.01.T01 AT5G57810 23.828 256 167 7 9 248 60 303 1.58e-14 72.8

Find 66 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACTCTTTGTAACCCTTAT+TGG 0.086843 8:+87960954 None:intergenic
CAGCAGTATCATTGAGAAAT+TGG 0.131329 8:+87960821 None:intergenic
TCTCTTACTCGTTTCTCTAT+TGG 0.180573 8:-87961115 MsG0880047546.01.T01:CDS
CTCTTACTCGTTTCTCTATT+GGG 0.199873 8:-87961114 MsG0880047546.01.T01:CDS
CAATTGAAGCACAGAACTTT+TGG 0.238414 8:+87959200 None:intergenic
GGCTTGGTGATTATTCTAAT+TGG 0.247598 8:-87960930 MsG0880047546.01.T01:CDS
ATCTTGCAAGGCTGGCTTAC+TGG 0.273204 8:-87959174 MsG0880047546.01.T01:CDS
TGGATAACCTCAAGACTAAT+TGG 0.274984 8:-87959154 MsG0880047546.01.T01:CDS
CCATTGGTTGCTGTGCATTC+AGG 0.281802 8:-87959076 MsG0880047546.01.T01:CDS
CCAGCACTTGAATGCTCTTC+AGG 0.319947 8:-87960785 MsG0880047546.01.T01:intron
TGGTGAATCTCTTTCCAATA+AGG 0.327718 8:-87960968 MsG0880047546.01.T01:CDS
GGATTGGAATTGAGAGAAGT+AGG 0.328014 8:+87961223 None:intergenic
GGGTTAATGATAATGGTAAT+TGG 0.330366 8:-87960897 MsG0880047546.01.T01:CDS
GTCGTGTCACATGGCTTCTT+TGG 0.332495 8:-87961074 MsG0880047546.01.T01:CDS
ATGATAATGGTAATTGGAAT+AGG 0.335667 8:-87960891 MsG0880047546.01.T01:CDS
ATTAAGAGCTGTTTGCAATC+TGG 0.346962 8:-87960868 MsG0880047546.01.T01:CDS
GCGGGCTTCGTCCAGTTTGT+TGG 0.349033 8:+87959269 None:intergenic
ATTCTAATTGGTTGCAGAAA+AGG 0.362347 8:-87960918 MsG0880047546.01.T01:CDS
GTAAGCCAGCCTTGCAAGAT+TGG 0.371609 8:+87959177 None:intergenic
CGGGCTTCGTCCAGTTTGTT+GGG 0.372194 8:+87959270 None:intergenic
GGTGAATCTCTTTCCAATAA+GGG 0.374860 8:-87960967 MsG0880047546.01.T01:CDS
ACACAATGATCAGGAAAATC+AGG 0.392956 8:+87959102 None:intergenic
AATTGCCAATCTTGCAAGGC+TGG 0.393743 8:-87959182 MsG0880047546.01.T01:CDS
CAGAAAAGGGTTAATGATAA+TGG 0.401559 8:-87960904 MsG0880047546.01.T01:CDS
TTGGTGTATGTACCACTTGC+GGG 0.403409 8:+87959251 None:intergenic
CTTATCAGAACCCAACAAAC+TGG 0.403972 8:-87959280 MsG0880047546.01.T01:CDS
CAATCCTTCTCACCGGCATA+TGG 0.419051 8:-87961206 MsG0880047546.01.T01:CDS
GCTGTGCATTCAGGAATAAC+AGG 0.424635 8:-87959067 MsG0880047546.01.T01:CDS
TTCTAATTGGTTGCAGAAAA+GGG 0.428475 8:-87960917 MsG0880047546.01.T01:CDS
CTGATCATTGTGTACTCCAT+TGG 0.446039 8:-87959092 MsG0880047546.01.T01:CDS
GTAAAACCACAATCGTTTGA+AGG 0.451046 8:+87959302 None:intergenic
GATTGGAATTGAGAGAAGTA+GGG 0.455076 8:+87961224 None:intergenic
AGCAGTATCATTGAGAAATT+GGG 0.463314 8:+87960822 None:intergenic
TTAGTCCAAGCATCACAGTC+AGG 0.471081 8:+87959227 None:intergenic
GAATTGAGAGAAGTAGGGTT+AGG 0.481403 8:+87961229 None:intergenic
ATAAGGGTTACAAAGAGTAT+AGG 0.489292 8:-87960951 MsG0880047546.01.T01:CDS
CCTGAAGAGCATTCAAGTGC+TGG 0.491367 8:+87960785 None:intergenic
GATCTTCATGATGATTGAAA+AGG 0.492948 8:+87961281 None:intergenic
AAAAGCACCAAGGATGATGA+TGG 0.496207 8:+87961137 None:intergenic
CCAACCCTGACTGTGATGCT+TGG 0.496606 8:-87959232 MsG0880047546.01.T01:CDS
CAATGGAGTACACAATGATC+AGG 0.502653 8:+87959093 None:intergenic
CCTTCTTCCAATTAGTCTTG+AGG 0.506678 8:+87959147 None:intergenic
ATTCTGAAGTGGCTTGTTTG+TGG 0.510259 8:+87961181 None:intergenic
AAACCTTTCGCATTCTGAAG+TGG 0.516342 8:+87961170 None:intergenic
CTTCAATTGCCAATCTTGCA+AGG 0.523187 8:-87959186 MsG0880047546.01.T01:CDS
CATATGCCGGTGAGAAGGAT+TGG 0.528569 8:+87961207 None:intergenic
GTTGTTACTAACAAAGGTGC+TGG 0.540017 8:-87960988 MsG0880047546.01.T01:CDS
GTGGTTGTTGTCGTGTCACA+TGG 0.545299 8:-87961083 MsG0880047546.01.T01:CDS
CCTCAAGACTAATTGGAAGA+AGG 0.556353 8:-87959147 MsG0880047546.01.T01:CDS
TTGTTTGTGGAGCCATATGC+CGG 0.560551 8:+87961194 None:intergenic
TGTAAGCCTTCAAACGATTG+TGG 0.563865 8:-87959308 MsG0880047546.01.T01:CDS
AAGATCAGTAACAACTTGAT+CGG 0.567448 8:-87961264 MsG0880047546.01.T01:CDS
GGTTACAAAGAGTATAGGCT+TGG 0.577049 8:-87960946 MsG0880047546.01.T01:CDS
GTTGGTGTATGTACCACTTG+CGG 0.581577 8:+87959250 None:intergenic
GGAGCCATATGCCGGTGAGA+AGG 0.588828 8:+87961202 None:intergenic
AACTGGACGAAGCCCGCAAG+TGG 0.593413 8:-87959263 MsG0880047546.01.T01:CDS
AAGCCACTTCAGAATGCGAA+AGG 0.596895 8:-87961173 MsG0880047546.01.T01:CDS
CCTGAATGCACAGCAACCAA+TGG 0.605356 8:+87959076 None:intergenic
TCAATTCCAATCCTTCTCAC+CGG 0.606880 8:-87961213 MsG0880047546.01.T01:CDS
TTCAGGAATAACAGGAGAGA+CGG 0.607176 8:-87959059 MsG0880047546.01.T01:intron
CCAAGCATCACAGTCAGGGT+TGG 0.607626 8:+87959232 None:intergenic
TAGTCCAAGCATCACAGTCA+GGG 0.611894 8:+87959228 None:intergenic
AAAGCACCAAGGATGATGAT+GGG 0.627485 8:+87961138 None:intergenic
CAAGACTAATTGGAAGAAGG+TGG 0.638244 8:-87959144 MsG0880047546.01.T01:CDS
GAAGAGCATTCAAGTGCTGG+AGG 0.648502 8:+87960788 None:intergenic
CGAGTAAGAGAAAAGCACCA+AGG 0.712592 8:+87961127 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATAATTTAAATTTAAA+AGG - Chr8:87960036-87960055 MsG0880047546.01.T01:intron 0.0%
!! TGCATAAAACATAAAAAAAA+TGG + Chr8:87960911-87960930 None:intergenic 15.0%
!!! AATTTTCTGAAATCAATTTT+AGG + Chr8:87960843-87960862 None:intergenic 15.0%
!!! ATTTCTATTTCTAATAAATC+AGG + Chr8:87959805-87959824 None:intergenic 15.0%
!!! ATTTTCTGAAATCAATTTTA+GGG + Chr8:87960842-87960861 None:intergenic 15.0%
!!! AATTCTACAAATGCAATTTT+CGG - Chr8:87960873-87960892 MsG0880047546.01.T01:CDS 20.0%
!!! ACTTGCTTGTTATTTATATT+TGG - Chr8:87959705-87959724 MsG0880047546.01.T01:intron 20.0%
!!! ACTTTTAAATTGGATATTCT+GGG - Chr8:87959951-87959970 MsG0880047546.01.T01:intron 20.0%
!!! CTTGCTTGTTATTTATATTT+GGG - Chr8:87959706-87959725 MsG0880047546.01.T01:intron 20.0%
!!! TTGCTTGTTATTTATATTTG+GGG - Chr8:87959707-87959726 MsG0880047546.01.T01:intron 20.0%
! AACCATAAAGTAAAACCAAA+TGG + Chr8:87961258-87961277 None:intergenic 25.0%
! AAGTTCTACAAAAGATTCAT+TGG + Chr8:87960230-87960249 None:intergenic 25.0%
! AATTGCATTTGTAGAATTAC+TGG + Chr8:87960871-87960890 None:intergenic 25.0%
! AGTAACAACAAAAGCAAAAA+TGG + Chr8:87959250-87959269 None:intergenic 25.0%
! GTGTTCATCACAAAAAATTA+GGG - Chr8:87959754-87959773 MsG0880047546.01.T01:intron 25.0%
! TTATATGTGAATGTTCTTGA+AGG + Chr8:87960426-87960445 None:intergenic 25.0%
!! GACTTTTAAATTGGATATTC+TGG - Chr8:87959950-87959969 MsG0880047546.01.T01:intron 25.0%
!! GTGATCAATTTAAGTTTCAA+TGG - Chr8:87960676-87960695 MsG0880047546.01.T01:intron 25.0%
!! TATTTCTAATAAATCAGGAC+GGG + Chr8:87959800-87959819 None:intergenic 25.0%
!! TGGTTTGAAATAGAAATCTT+GGG - Chr8:87959631-87959650 MsG0880047546.01.T01:intron 25.0%
!! TTGGTTTGAAATAGAAATCT+TGG - Chr8:87959630-87959649 MsG0880047546.01.T01:intron 25.0%
!! TTTGTCTTTCTGAGTTTTTA+AGG - Chr8:87959836-87959855 MsG0880047546.01.T01:intron 25.0%
!! TTTTTATGTTTTATGCAGTC+TGG - Chr8:87960914-87960933 MsG0880047546.01.T01:CDS 25.0%
!!! ATGATAATGGTAATTGGAAT+AGG - Chr8:87959358-87959377 MsG0880047546.01.T01:intron 25.0%
!!! CTATTTCTAATAAATCAGGA+CGG + Chr8:87959801-87959820 None:intergenic 25.0%
!!! GAATCAATTTTCTGAAATCA+AGG + Chr8:87960805-87960824 None:intergenic 25.0%
!!! TATGGTTTTACTTTATGTCA+TGG - Chr8:87961271-87961290 MsG0880047546.01.T01:exon 25.0%
!!! TGAAAAGTGGACTTTTAAAT+TGG - Chr8:87959941-87959960 MsG0880047546.01.T01:intron 25.0%
!!! TGAATAGTGGACTTTTAAAT+TGG - Chr8:87960106-87960125 MsG0880047546.01.T01:intron 25.0%
AAGATCAGTAACAACTTGAT+CGG - Chr8:87958985-87959004 MsG0880047546.01.T01:intron 30.0%
AATTTCTGTATGACACATAC+TGG - Chr8:87960527-87960546 MsG0880047546.01.T01:intron 30.0%
AGCAGTATCATTGAGAAATT+GGG + Chr8:87959430-87959449 None:intergenic 30.0%
AGGAATTGCATTTGTAGTTT+AGG + Chr8:87960785-87960804 None:intergenic 30.0%
ATACTCTTTGTAACCCTTAT+TGG + Chr8:87959298-87959317 None:intergenic 30.0%
ATGCATTCTTGTGTTTGTAT+AGG - Chr8:87960012-87960031 MsG0880047546.01.T01:intron 30.0%
ATTCTAATTGGTTGCAGAAA+AGG - Chr8:87959331-87959350 MsG0880047546.01.T01:intron 30.0%
ATTGTGTTCATCACAATGTT+TGG - Chr8:87959611-87959630 MsG0880047546.01.T01:intron 30.0%
CAGAAAAGGGTTAATGATAA+TGG - Chr8:87959345-87959364 MsG0880047546.01.T01:intron 30.0%
CATTAGCATGTACATGATTT+AGG - Chr8:87961232-87961251 MsG0880047546.01.T01:CDS 30.0%
CGTGTTCATCACAAAAAATT+AGG - Chr8:87959753-87959772 MsG0880047546.01.T01:intron 30.0%
GATCTTCATGATGATTGAAA+AGG + Chr8:87958971-87958990 None:intergenic 30.0%
GGAATTGCATTTGTAGTTTA+GGG + Chr8:87960784-87960803 None:intergenic 30.0%
TAACACGACATAACACTATA+AGG + Chr8:87960554-87960573 None:intergenic 30.0%
TGTGAAAATTTATGTGCAGA+AGG - Chr8:87959861-87959880 MsG0880047546.01.T01:intron 30.0%
TTAAATTGGATATTCTGGGT+TGG - Chr8:87959955-87959974 MsG0880047546.01.T01:intron 30.0%
TTCTAATTGGTTGCAGAAAA+GGG - Chr8:87959332-87959351 MsG0880047546.01.T01:intron 30.0%
TTGCATGTGATTTATGTTTC+TGG - Chr8:87959567-87959586 MsG0880047546.01.T01:intron 30.0%
! AAATGCAATTTTCGGACTTA+TGG - Chr8:87960881-87960900 MsG0880047546.01.T01:CDS 30.0%
! ACGTTTTTCTGATTTTGTCA+AGG - Chr8:87960075-87960094 MsG0880047546.01.T01:intron 30.0%
! ATAAGGGTTACAAAGAGTAT+AGG - Chr8:87959298-87959317 MsG0880047546.01.T01:CDS 30.0%
! GGTTTGAAATAGAAATCTTG+GGG - Chr8:87959632-87959651 MsG0880047546.01.T01:intron 30.0%
!! GGGTTAATGATAATGGTAAT+TGG - Chr8:87959352-87959371 MsG0880047546.01.T01:intron 30.0%
!! GTTTCTCTATTGGGTTTTAT+TGG - Chr8:87959144-87959163 MsG0880047546.01.T01:CDS 30.0%
!! TTGATGTTGATTGCTTTTCT+GGG - Chr8:87959665-87959684 MsG0880047546.01.T01:intron 30.0%
!!! GCTTTTGTTGTTACTAACAA+AGG - Chr8:87959255-87959274 MsG0880047546.01.T01:CDS 30.0%
ACACAATGATCAGGAAAATC+AGG + Chr8:87961150-87961169 None:intergenic 35.0%
ATTAAGAGCTGTTTGCAATC+TGG - Chr8:87959381-87959400 MsG0880047546.01.T01:intron 35.0%
CAAGGTTTCTTTCTGAATAG+TGG - Chr8:87960093-87960112 MsG0880047546.01.T01:intron 35.0%
CAATCCTAGCGAAAAATTAC+TGG + Chr8:87960751-87960770 None:intergenic 35.0%
CACCAATATTGCAAAGCAAA+GGG + Chr8:87960374-87960393 None:intergenic 35.0%
CAGCAGTATCATTGAGAAAT+TGG + Chr8:87959431-87959450 None:intergenic 35.0%
CTCTTACTCGTTTCTCTATT+GGG - Chr8:87959135-87959154 MsG0880047546.01.T01:CDS 35.0%
GATTGGAATTGAGAGAAGTA+GGG + Chr8:87959028-87959047 None:intergenic 35.0%
GGGCAAAAACTAACAAAAAG+AGG + Chr8:87960261-87960280 None:intergenic 35.0%
GGTGAATCTCTTTCCAATAA+GGG - Chr8:87959282-87959301 MsG0880047546.01.T01:CDS 35.0%
GGTTTCTTACTGAAAAAGTG+TGG - Chr8:87960146-87960165 MsG0880047546.01.T01:intron 35.0%
GTAAAACCACAATCGTTTGA+AGG + Chr8:87960950-87960969 None:intergenic 35.0%
TCTCTTACTCGTTTCTCTAT+TGG - Chr8:87959134-87959153 MsG0880047546.01.T01:CDS 35.0%
TGGATAACCTCAAGACTAAT+TGG - Chr8:87961095-87961114 MsG0880047546.01.T01:CDS 35.0%
TGGTGAATCTCTTTCCAATA+AGG - Chr8:87959281-87959300 MsG0880047546.01.T01:CDS 35.0%
TGTACATGATTTAGGCCATT+TGG - Chr8:87961240-87961259 MsG0880047546.01.T01:CDS 35.0%
TTCCCTTTGCTTTGCAATAT+TGG - Chr8:87960369-87960388 MsG0880047546.01.T01:intron 35.0%
! AACATCTGCTTTAAGCACAT+GGG + Chr8:87960715-87960734 None:intergenic 35.0%
! AAGCAAAGGGAATTCAAGTT+TGG + Chr8:87960361-87960380 None:intergenic 35.0%
! CAATTGAAGCACAGAACTTT+TGG + Chr8:87961052-87961071 None:intergenic 35.0%
! CAGTAATTTTTCGCTAGGAT+TGG - Chr8:87960749-87960768 MsG0880047546.01.T01:intron 35.0%
! CTTTCCAGTAATTTTTCGCT+AGG - Chr8:87960744-87960763 MsG0880047546.01.T01:intron 35.0%
! GCAATATTGGTGGTATCTAA+TGG - Chr8:87960382-87960401 MsG0880047546.01.T01:intron 35.0%
!! CTTGATGTTGATTGCTTTTC+TGG - Chr8:87959664-87959683 MsG0880047546.01.T01:intron 35.0%
!! GGCTTGGTGATTATTCTAAT+TGG - Chr8:87959319-87959338 MsG0880047546.01.T01:CDS 35.0%
!! TTGTCACTGTTTCTGAAAAG+TGG - Chr8:87959928-87959947 MsG0880047546.01.T01:intron 35.0%
!!! GGCCATTTGGTTTTACTTTA+TGG - Chr8:87961253-87961272 MsG0880047546.01.T01:CDS 35.0%
!!! TCTCTATTGGGTTTTATTGG+TGG - Chr8:87959147-87959166 MsG0880047546.01.T01:CDS 35.0%
AGCACTAGCATACAGAAAAG+GGG + Chr8:87960281-87960300 None:intergenic 40.0%
CAAGACTAATTGGAAGAAGG+TGG - Chr8:87961105-87961124 MsG0880047546.01.T01:CDS 40.0%
CAATGGAGTACACAATGATC+AGG + Chr8:87961159-87961178 None:intergenic 40.0%
CAGCACTAGCATACAGAAAA+GGG + Chr8:87960282-87960301 None:intergenic 40.0%
CCACCAATATTGCAAAGCAA+AGG + Chr8:87960375-87960394 None:intergenic 40.0%
CCTCAAGACTAATTGGAAGA+AGG - Chr8:87961102-87961121 MsG0880047546.01.T01:CDS 40.0%
CCTTTGCTTTGCAATATTGG+TGG - Chr8:87960372-87960391 MsG0880047546.01.T01:intron 40.0%
CTGATCATTGTGTACTCCAT+TGG - Chr8:87961157-87961176 MsG0880047546.01.T01:CDS 40.0%
CTTATCAGAACCCAACAAAC+TGG - Chr8:87960969-87960988 MsG0880047546.01.T01:CDS 40.0%
CTTCAATTGCCAATCTTGCA+AGG - Chr8:87961063-87961082 MsG0880047546.01.T01:CDS 40.0%
GAAAAACCCATCATCATCCT+TGG - Chr8:87959105-87959124 MsG0880047546.01.T01:CDS 40.0%
GAATTGAGAGAAGTAGGGTT+AGG + Chr8:87959023-87959042 None:intergenic 40.0%
GGATTGGAATTGAGAGAAGT+AGG + Chr8:87959029-87959048 None:intergenic 40.0%
TCAATTCCAATCCTTCTCAC+CGG - Chr8:87959036-87959055 MsG0880047546.01.T01:intron 40.0%
TGTAAGCCTTCAAACGATTG+TGG - Chr8:87960941-87960960 MsG0880047546.01.T01:CDS 40.0%
TTCAGGAATAACAGGAGAGA+CGG - Chr8:87961190-87961209 MsG0880047546.01.T01:CDS 40.0%
TTGGATATTCTGGGTAGTCA+TGG - Chr8:87960125-87960144 MsG0880047546.01.T01:intron 40.0%
! AAACCTTTCGCATTCTGAAG+TGG + Chr8:87959082-87959101 None:intergenic 40.0%
! AAAGCACCAAGGATGATGAT+GGG + Chr8:87959114-87959133 None:intergenic 40.0%
! CTGACTCTGCTTAACTTGAT+AGG - Chr8:87960490-87960509 MsG0880047546.01.T01:intron 40.0%
! GAACATCTGCTTTAAGCACA+TGG + Chr8:87960716-87960735 None:intergenic 40.0%
! GGTTACAAAGAGTATAGGCT+TGG - Chr8:87959303-87959322 MsG0880047546.01.T01:CDS 40.0%
! GTTGTTACTAACAAAGGTGC+TGG - Chr8:87959261-87959280 MsG0880047546.01.T01:CDS 40.0%
!! AAAAGCACCAAGGATGATGA+TGG + Chr8:87959115-87959134 None:intergenic 40.0%
!! ATTCTGAAGTGGCTTGTTTG+TGG + Chr8:87959071-87959090 None:intergenic 40.0%
!! CCTTCTTCCAATTAGTCTTG+AGG + Chr8:87961105-87961124 None:intergenic 40.0%
AAGCCACTTCAGAATGCGAA+AGG - Chr8:87959076-87959095 MsG0880047546.01.T01:CDS 45.0%
AATTGCCAATCTTGCAAGGC+TGG - Chr8:87961067-87961086 MsG0880047546.01.T01:CDS 45.0%
GCAGCACTAGCATACAGAAA+AGG + Chr8:87960283-87960302 None:intergenic 45.0%
GCTGTGCATTCAGGAATAAC+AGG - Chr8:87961182-87961201 MsG0880047546.01.T01:CDS 45.0%
GTTGGTGTATGTACCACTTG+CGG + Chr8:87961002-87961021 None:intergenic 45.0%
TAGTCCAAGCATCACAGTCA+GGG + Chr8:87961024-87961043 None:intergenic 45.0%
TTAGTCCAAGCATCACAGTC+AGG + Chr8:87961025-87961044 None:intergenic 45.0%
TTGGTGTATGTACCACTTGC+GGG + Chr8:87961001-87961020 None:intergenic 45.0%
TTGTTTGTGGAGCCATATGC+CGG + Chr8:87959058-87959077 None:intergenic 45.0%
TTTCTGTATGCTAGTGCTGC+TGG - Chr8:87960283-87960302 MsG0880047546.01.T01:intron 45.0%
! TTCTGTATGCTAGTGCTGCT+GGG - Chr8:87960284-87960303 MsG0880047546.01.T01:intron 45.0%
!! CGAGTAAGAGAAAAGCACCA+AGG + Chr8:87959125-87959144 None:intergenic 45.0%
!! GGATATTCTGGGTTGGCATA+TGG - Chr8:87959962-87959981 MsG0880047546.01.T01:intron 45.0%
!!! TTACTTATTTTATTTTTTTA+TGG - Chr8:87960575-87960594 MsG0880047546.01.T01:intron 5.0%
CAATCCTTCTCACCGGCATA+TGG - Chr8:87959043-87959062 MsG0880047546.01.T01:intron 50.0%
CATATGCCGGTGAGAAGGAT+TGG + Chr8:87959045-87959064 None:intergenic 50.0%
CCAGCACTTGAATGCTCTTC+AGG - Chr8:87959464-87959483 MsG0880047546.01.T01:intron 50.0%
CCTGAATGCACAGCAACCAA+TGG + Chr8:87961176-87961195 None:intergenic 50.0%
GGAATAACAGGAGAGACGGT+TGG - Chr8:87961194-87961213 MsG0880047546.01.T01:CDS 50.0%
GTAAGCCAGCCTTGCAAGAT+TGG + Chr8:87961075-87961094 None:intergenic 50.0%
GTCGTGTCACATGGCTTCTT+TGG - Chr8:87959175-87959194 MsG0880047546.01.T01:CDS 50.0%
GTGGTTGTTGTCGTGTCACA+TGG - Chr8:87959166-87959185 MsG0880047546.01.T01:CDS 50.0%
! CCATTGGTTGCTGTGCATTC+AGG - Chr8:87961173-87961192 MsG0880047546.01.T01:CDS 50.0%
!! ATCTTGCAAGGCTGGCTTAC+TGG - Chr8:87961075-87961094 MsG0880047546.01.T01:CDS 50.0%
!! CCTGAAGAGCATTCAAGTGC+TGG + Chr8:87959467-87959486 None:intergenic 50.0%
!! GAAGAGCATTCAAGTGCTGG+AGG + Chr8:87959464-87959483 None:intergenic 50.0%
CCAACCCTGACTGTGATGCT+TGG - Chr8:87961017-87961036 MsG0880047546.01.T01:CDS 55.0%
CCAAGCATCACAGTCAGGGT+TGG + Chr8:87961020-87961039 None:intergenic 55.0%
! CGGGCTTCGTCCAGTTTGTT+GGG + Chr8:87960982-87961001 None:intergenic 55.0%
AACTGGACGAAGCCCGCAAG+TGG - Chr8:87960986-87961005 MsG0880047546.01.T01:CDS 60.0%
GCGGGCTTCGTCCAGTTTGT+TGG + Chr8:87960983-87961002 None:intergenic 60.0%
GGAGCCATATGCCGGTGAGA+AGG + Chr8:87959050-87959069 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 87958937 87961334 87958937 ID=MsG0880047546.01;Name=MsG0880047546.01
Chr8 mRNA 87958937 87961334 87958937 ID=MsG0880047546.01.T01;Parent=MsG0880047546.01;Name=MsG0880047546.01.T01;_AED=0.49;_eAED=0.49;_QI=45|0.5|0.33|1|1|1|3|0|268
Chr8 exon 87958937 87958959 87958937 ID=MsG0880047546.01.T01:exon:15870;Parent=MsG0880047546.01.T01
Chr8 exon 87959060 87959339 87959060 ID=MsG0880047546.01.T01:exon:15869;Parent=MsG0880047546.01.T01
Chr8 exon 87960786 87961334 87960786 ID=MsG0880047546.01.T01:exon:15868;Parent=MsG0880047546.01.T01
Chr8 five_prime_UTR 87961290 87961334 87961290 ID=MsG0880047546.01.T01:five_prime_utr;Parent=MsG0880047546.01.T01
Chr8 CDS 87960786 87961289 87960786 ID=MsG0880047546.01.T01:cds;Parent=MsG0880047546.01.T01
Chr8 CDS 87959060 87959339 87959060 ID=MsG0880047546.01.T01:cds;Parent=MsG0880047546.01.T01
Chr8 CDS 87958937 87958959 87958937 ID=MsG0880047546.01.T01:cds;Parent=MsG0880047546.01.T01
Gene Sequence

>MsG0880047546.01.T01

ATGAAGATCAGTAACAACTTGATCGGAATTCTCAATTTCCTAACCCTACTTCTCTCAATTCCAATCCTTCTCACCGGCATATGGCTCCACAAACAAGCCACTTCAGAATGCGAAAGGTTTCTTGAAAAACCCATCATCATCCTTGGTGCTTTTCTCTTACTCGTTTCTCTATTGGGTTTTATTGGTGGTTGTTGTCGTGTCACATGGCTTCTTTGGTTCTATCTCTTTTTCATGTTCTTGCTCATCGTTGTTCTATTCGTTTTCACCATTTTTGCTTTTGTTGTTACTAACAAAGGTGCTGGTGAATCTCTTTCCAATAAGGGTTACAAAGAGTATAGGCTTGGTGATTATTCTAATTGGTTGCAGAAAAGGGTTAATGATAATGGTAATTGGAATAGGATTAAGAGCTGTTTGCAATCTGGAAAACTTTGCACTGACTTTCATTCCCAATTTCTCAATGATACTGCTGATAAATTCTACCTCCAGCACTTGAATGCTCTTCAGTCTGGATGTTGTAAGCCTTCAAACGATTGTGGTTTTACTTATCAGAACCCAACAAACTGGACGAAGCCCGCAAGTGGTACATACACCAACCCTGACTGTGATGCTTGGACTAATGATCCAAAAGTTCTGTGCTTCAATTGCCAATCTTGCAAGGCTGGCTTACTGGATAACCTCAAGACTAATTGGAAGAAGGTGGCTGTTGTCAACATCATATTCCTGATTTTCCTGATCATTGTGTACTCCATTGGTTGCTGTGCATTCAGGAATAACAGGAGAGACGTACAGTTTGACTTTGCTGTTTAA
Protein sequence

>MsG0880047546.01.T01

MKISNNLIGILNFLTLLLSIPILLTGIWLHKQATSECERFLEKPIIILGAFLLLVSLLGFIGGCCRVTWLLWFYLFFMFLLIVVLFVFTIFAFVVTNKGAGESLSNKGYKEYRLGDYSNWLQKRVNDNGNWNRIKSCLQSGKLCTDFHSQFLNDTADKFYLQHLNALQSGCCKPSNDCGFTYQNPTNWTKPASGTYTNPDCDAWTNDPKVLCFNCQSCKAGLLDNLKTNWKKVAVVNIIFLIFLIIVYSIGCCAFRNNRRDVQFDFAV*