AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047702.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047702.01.T01 MTR_4g133060 100.000 198 0 0 27 224 25 222 1.71e-145 405
MsG0880047702.01.T01 MTR_4g133060 100.000 196 0 0 29 224 1 196 2.44e-143 398
MsG0880047702.01.T01 MTR_4g133060 98.870 177 2 0 27 203 25 201 7.79e-128 360
MsG0880047702.01.T01 MTR_2g025740 81.683 202 37 0 22 223 31 232 1.40e-120 342
MsG0880047702.01.T01 MTR_3g082970 73.604 197 52 0 27 223 29 225 9.21e-109 312
MsG0880047702.01.T01 MTR_8g097200 69.942 173 52 0 51 223 59 231 1.40e-89 264
MsG0880047702.01.T01 MTR_3g084940 68.000 175 55 1 50 223 52 226 2.58e-85 253
MsG0880047702.01.T01 MTR_7g097270 51.872 187 87 3 36 221 33 217 1.11e-63 197
MsG0880047702.01.T01 MTR_7g097270 51.587 126 58 3 35 159 32 155 5.56e-35 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047702.01.T01 AT3G07880 72.081 197 54 1 27 223 42 237 1.98e-107 309
MsG0880047702.01.T01 AT1G62450 67.337 199 63 1 27 223 24 222 8.37e-91 266
MsG0880047702.01.T01 AT1G12070 64.563 206 71 1 21 224 18 223 2.11e-89 263

Find 50 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGAAATCCTGAGGGTTTA+TGG 0.148003 8:-89746167 MsG0880047702.01.T01:CDS
GTAAACCATAATATCGTTTC+GGG 0.279011 8:-89746096 MsG0880047702.01.T01:CDS
CCAGATGGTGTGGTCTCTTC+TGG 0.287953 8:+89745893 None:intergenic
TAAGACCCGAAACGATATTA+TGG 0.313601 8:+89746091 None:intergenic
ACCAACACTGTCTGGAAAAC+TGG 0.314046 8:-89746063 MsG0880047702.01.T01:CDS
GAAGAAAGTGGCAATGAAAA+AGG 0.326476 8:-89747108 MsG0880047702.01.T01:CDS
TGAAAGAAGGTTCTCGCTAT+AGG 0.338137 8:-89746137 MsG0880047702.01.T01:CDS
ATGATGAGAGCTTGAGGAAG+TGG 0.351291 8:-89746847 MsG0880047702.01.T01:CDS
AGTAAACCATAATATCGTTT+CGG 0.363422 8:-89746097 MsG0880047702.01.T01:CDS
CCTGAGCCTTGCTATAAAAT+CGG 0.376974 8:-89746226 MsG0880047702.01.T01:CDS
AGGCTCAGGAACTTCACTTC+TGG 0.390008 8:+89746240 None:intergenic
TCTGGCATTTCATGCGTGTA+AGG 0.392034 8:+89745911 None:intergenic
AAACGATATTATGGTTTACT+TGG 0.404957 8:+89746100 None:intergenic
TTAAGTACACCAACACTGTC+TGG 0.405966 8:-89746071 MsG0880047702.01.T01:CDS
TAGAGATGATATAATTCTTC+CGG 0.411478 8:-89746199 MsG0880047702.01.T01:CDS
AGTATTGACATTAGTTCTGT+TGG 0.415133 8:-89746806 MsG0880047702.01.T01:CDS
AAGTGGAAGGAACAACTTCT+TGG 0.419784 8:-89746830 MsG0880047702.01.T01:CDS
CCCTCAGGATTTCCTGTCTC+TGG 0.424821 8:+89746174 None:intergenic
GCGTGTAAGGCTCTGCTTGA+GGG 0.458941 8:+89745924 None:intergenic
CCAGAAGAGACCACACCATC+TGG 0.459831 8:-89745893 MsG0880047702.01.T01:CDS
ATGAATTATAAAAGAAACTC+TGG 0.464617 8:-89746265 MsG0880047702.01.T01:intron
TGCTCTTTCAAAGTGAATTG+AGG 0.475438 8:+89746993 None:intergenic
TTATGGTTTACTTTGAAAGA+AGG 0.483196 8:-89746150 MsG0880047702.01.T01:CDS
ATTCTTCCGGTACCAGAGAC+AGG 0.495315 8:-89746186 MsG0880047702.01.T01:CDS
TTTGAAAGAGCAACTCGAAA+AGG 0.495650 8:-89746982 MsG0880047702.01.T01:CDS
GACATACTCAGCTAGAACTA+AGG 0.496082 8:-89745855 MsG0880047702.01.T01:intron
CTGAGCCTTGCTATAAAATC+GGG 0.498043 8:-89746225 MsG0880047702.01.T01:CDS
ATTGACATTAGTTCTGTTGG+AGG 0.504278 8:-89746803 MsG0880047702.01.T01:intron
GTCTGGAAAACTGGCATCAA+GGG 0.505605 8:-89746054 MsG0880047702.01.T01:intron
GACAGCACTAAAGAGATGAT+TGG 0.507573 8:-89745956 MsG0880047702.01.T01:CDS
AGAGCAACTCGAAAAGGATA+AGG 0.510276 8:-89746976 MsG0880047702.01.T01:intron
TCTAGCTGAGTATGTCCCTC+TGG 0.522000 8:+89745862 None:intergenic
TGTCTGGAAAACTGGCATCA+AGG 0.522366 8:-89746055 MsG0880047702.01.T01:CDS
GGATTTCCTGTCTCTGGTAC+CGG 0.523662 8:+89746180 None:intergenic
AAAGTAAACCATAAACCCTC+AGG 0.529443 8:+89746159 None:intergenic
TGCAGTGATCATGAAGAAAG+TGG 0.544911 8:-89747120 MsG0880047702.01.T01:CDS
AGGAAGGGGCAACTCAGTAC+AGG 0.559411 8:-89747088 MsG0880047702.01.T01:CDS
AACGTCATCATCATCGTCCT+CGG 0.560840 8:+89747037 None:intergenic
CTTAGGATGATGAGAGCTTG+AGG 0.563065 8:-89746853 MsG0880047702.01.T01:intron
TGCGTGTAAGGCTCTGCTTG+AGG 0.568111 8:+89745923 None:intergenic
GGCAAATAAACCAGATGGTG+TGG 0.575546 8:+89745883 None:intergenic
CATCTGGTTTATTTGCCAGA+GGG 0.606713 8:-89745877 MsG0880047702.01.T01:CDS
CCATCTGGTTTATTTGCCAG+AGG 0.615862 8:-89745878 MsG0880047702.01.T01:CDS
CCAGAGACAGGAAATCCTGA+GGG 0.631026 8:-89746174 MsG0880047702.01.T01:CDS
GTTGATAAGAAGATTGATGT+TGG 0.632731 8:-89747017 MsG0880047702.01.T01:CDS
CCTCTGGCAAATAAACCAGA+TGG 0.636681 8:+89745878 None:intergenic
TGAGAGCTTGAGGAAGTGGA+AGG 0.642240 8:-89746843 MsG0880047702.01.T01:CDS
ACCAGAGACAGGAAATCCTG+AGG 0.670184 8:-89746175 MsG0880047702.01.T01:CDS
CAGTTCTGTTGCTGCCACCG+AGG 0.685070 8:-89747054 MsG0880047702.01.T01:CDS
GTCATCATCATCGTCCTCGG+TGG 0.686747 8:+89747040 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATATTTAACAATTAGTA+AGG + Chr8:89745057-89745076 None:intergenic 15.0%
!! GAAAGTTAAGTAAAAAAAAT+TGG + Chr8:89745156-89745175 None:intergenic 15.0%
!! TGTACTATATAAAAGTAATA+TGG - Chr8:89745684-89745703 MsG0880047702.01.T01:intron 15.0%
!!! CTTTTTAATGTTTTTTTCTT+CGG - Chr8:89744510-89744529 MsG0880047702.01.T01:intron 15.0%
!! AAGTTAAATTAGAAAGGAAA+AGG - Chr8:89746519-89746538 MsG0880047702.01.T01:intron 20.0%
!! AATCATTAATCTGACATTAA+GGG + Chr8:89744709-89744728 None:intergenic 20.0%
!! ATGAATTATAAAAGAAACTC+TGG - Chr8:89745189-89745208 MsG0880047702.01.T01:intron 20.0%
!! ATTAATGAAAAACAAATCCT+AGG - Chr8:89746129-89746148 MsG0880047702.01.T01:CDS 20.0%
!! ATTACTAGAACATTTATCTA+TGG + Chr8:89746937-89746956 None:intergenic 20.0%
!! TTAATGAAAAACAAATCCTA+GGG - Chr8:89746130-89746149 MsG0880047702.01.T01:CDS 20.0%
!! TTTAAGTAGAAATTATGTTC+TGG + Chr8:89746836-89746855 None:intergenic 20.0%
!!! AATACTGAATATTTTTTCTG+TGG - Chr8:89746907-89746926 MsG0880047702.01.T01:intron 20.0%
!!! AATTTAAAACACCAAAGATT+AGG - Chr8:89746616-89746635 MsG0880047702.01.T01:intron 20.0%
! AAACGATATTATGGTTTACT+TGG + Chr8:89745357-89745376 None:intergenic 25.0%
! AATAAGATCCACAAACAAAA+TGG + Chr8:89747073-89747092 None:intergenic 25.0%
! AATTTATTAACACACCAAAG+AGG + Chr8:89746654-89746673 None:intergenic 25.0%
! AGTAAACCATAATATCGTTT+CGG - Chr8:89745357-89745376 MsG0880047702.01.T01:intron 25.0%
! ATCATTAATCTGACATTAAG+GGG + Chr8:89744708-89744727 None:intergenic 25.0%
! CAAATTACATCATAAGAAAC+AGG + Chr8:89745666-89745685 None:intergenic 25.0%
! GAATCATTAATCTGACATTA+AGG + Chr8:89744710-89744729 None:intergenic 25.0%
! GAGGGATTTATAAATGAAAT+CGG + Chr8:89746263-89746282 None:intergenic 25.0%
! GTCACTAAGTTAAATTAGAA+AGG - Chr8:89746513-89746532 MsG0880047702.01.T01:intron 25.0%
! TAATCCAAAACAAAAACTGT+TGG + Chr8:89747029-89747048 None:intergenic 25.0%
! TAGAGATGATATAATTCTTC+CGG - Chr8:89745255-89745274 MsG0880047702.01.T01:intron 25.0%
! TCATAACAATTGCTAAATGA+GGG + Chr8:89746281-89746300 None:intergenic 25.0%
! TTATAGTAATCTTATTGCTG+AGG - Chr8:89745463-89745482 MsG0880047702.01.T01:intron 25.0%
! TTCAGTTGATTGAAACAAAA+TGG + Chr8:89746989-89747008 None:intergenic 25.0%
!! ATGAGGATAAACAGATTTTA+AGG - Chr8:89746297-89746316 MsG0880047702.01.T01:intron 25.0%
!! TAAGGTCTAAAATTCATGAT+AGG + Chr8:89744779-89744798 None:intergenic 25.0%
!! TATCATGAATTTTAGACCTT+AGG - Chr8:89744778-89744797 MsG0880047702.01.T01:intron 25.0%
!! TTATGGTTTACTTTGAAAGA+AGG - Chr8:89745304-89745323 MsG0880047702.01.T01:intron 25.0%
!! TTCATTTTGTAGCCATAAAA+TGG + Chr8:89744752-89744771 None:intergenic 25.0%
!!! ATTGGTTTATTGCTCATTTT+TGG - Chr8:89745430-89745449 MsG0880047702.01.T01:intron 25.0%
!!! TTGGTTTATTGCTCATTTTT+TGG - Chr8:89745431-89745450 MsG0880047702.01.T01:intron 25.0%
AAATACGCACATATAGTATC+AGG + Chr8:89746733-89746752 None:intergenic 30.0%
AATACGCACATATAGTATCA+GGG + Chr8:89746732-89746751 None:intergenic 30.0%
ACAAAAACTGTTGGAATGAA+AGG + Chr8:89747020-89747039 None:intergenic 30.0%
ACAGTTGTTTGTAAAACGTT+TGG - Chr8:89746379-89746398 MsG0880047702.01.T01:intron 30.0%
AGAAGGTTAAAAACTACTAG+TGG + Chr8:89746212-89746231 None:intergenic 30.0%
AGTTATACTCTATCTAGCAA+TGG + Chr8:89745029-89745048 None:intergenic 30.0%
AGTTTATAGTACTATTGCTG+AGG - Chr8:89745833-89745852 MsG0880047702.01.T01:intron 30.0%
ATGAATATGATGTCCATTGA+TGG - Chr8:89745712-89745731 MsG0880047702.01.T01:intron 30.0%
ATTAACATGAGAACAATGCA+TGG + Chr8:89744541-89744560 None:intergenic 30.0%
CTCATAACAATTGCTAAATG+AGG + Chr8:89746282-89746301 None:intergenic 30.0%
CTCATTTAGCAATTGTTATG+AGG - Chr8:89746280-89746299 MsG0880047702.01.T01:intron 30.0%
GTAAACCATAATATCGTTTC+GGG - Chr8:89745358-89745377 MsG0880047702.01.T01:intron 30.0%
TGTGTGGAAAATAGAAAAGA+AGG + Chr8:89746229-89746248 None:intergenic 30.0%
TTATTCATGTCCCAAAACTT+TGG + Chr8:89746596-89746615 None:intergenic 30.0%
! ATATCCGTTTGTCCATTTTA+TGG - Chr8:89744737-89744756 MsG0880047702.01.T01:intron 30.0%
! GTTGATAAGAAGATTGATGT+TGG - Chr8:89744437-89744456 MsG0880047702.01.T01:intron 30.0%
! TCAGCTACACTTTTGATATT+CGG - Chr8:89747131-89747150 MsG0880047702.01.T01:CDS 30.0%
! TCTAGAAGAACCAAAGTTTT+GGG - Chr8:89746583-89746602 MsG0880047702.01.T01:intron 30.0%
! TGTTTTCTTATTGAGTCCTT+AGG - Chr8:89744584-89744603 MsG0880047702.01.T01:intron 30.0%
!! AGTATTGACATTAGTTCTGT+TGG - Chr8:89744648-89744667 MsG0880047702.01.T01:intron 30.0%
!! CATTCCAACAGTTTTTGTTT+TGG - Chr8:89747022-89747041 MsG0880047702.01.T01:CDS 30.0%
!! TTCTAGAAGAACCAAAGTTT+TGG - Chr8:89746582-89746601 MsG0880047702.01.T01:intron 30.0%
!! TTGACTTTCCATTTTGTTTG+TGG - Chr8:89747062-89747081 MsG0880047702.01.T01:CDS 30.0%
AAAGTAAACCATAAACCCTC+AGG + Chr8:89745298-89745317 None:intergenic 35.0%
AAAGTGGCAATGAAAAAGGA+AGG - Chr8:89744350-89744369 MsG0880047702.01.T01:CDS 35.0%
AAGTGGCAATGAAAAAGGAA+GGG - Chr8:89744351-89744370 MsG0880047702.01.T01:CDS 35.0%
ACACCAAAGATTAGGAATAG+AGG - Chr8:89746624-89746643 MsG0880047702.01.T01:intron 35.0%
ACTCCTCTATTCCTAATCTT+TGG + Chr8:89746630-89746649 None:intergenic 35.0%
ATACAGCTCAATACCATCAA+TGG + Chr8:89745728-89745747 None:intergenic 35.0%
ATGAAAGTAATCACGTGTGT+AGG - Chr8:89744960-89744979 MsG0880047702.01.T01:intron 35.0%
CGATGACAAAAAGTCGTATT+TGG - Chr8:89747105-89747124 MsG0880047702.01.T01:CDS 35.0%
CTTCATAGGTTATATCGTGT+CGG + Chr8:89744859-89744878 None:intergenic 35.0%
GAAGAAAGTGGCAATGAAAA+AGG - Chr8:89744346-89744365 MsG0880047702.01.T01:CDS 35.0%
GATGATATGATGTCCATTGA+TGG - Chr8:89746077-89746096 MsG0880047702.01.T01:CDS 35.0%
GTAGCCATAAAATGGACAAA+CGG + Chr8:89744744-89744763 None:intergenic 35.0%
GTCAATACTCAATGCTTCAT+AGG + Chr8:89744873-89744892 None:intergenic 35.0%
TAAGACCCGAAACGATATTA+TGG + Chr8:89745366-89745385 None:intergenic 35.0%
TATACAGCCAATACCATCAA+TGG + Chr8:89746093-89746112 None:intergenic 35.0%
TGCTCTTTCAAAGTGAATTG+AGG + Chr8:89744464-89744483 None:intergenic 35.0%
TTATATCGTTAGTGTACCCT+AGG + Chr8:89746149-89746168 None:intergenic 35.0%
TTTGAAAGAGCAACTCGAAA+AGG - Chr8:89744472-89744491 MsG0880047702.01.T01:intron 35.0%
! ATGATGTCCATTGATGGTAT+TGG - Chr8:89745718-89745737 MsG0880047702.01.T01:intron 35.0%
! ATTTTGTGTGTAAAGTGACG+AGG + Chr8:89746783-89746802 None:intergenic 35.0%
! CTACACTTTTGATATTCGGA+AGG - Chr8:89747135-89747154 MsG0880047702.01.T01:CDS 35.0%
! CTTTTGATATTCGGAAGGAT+TGG - Chr8:89747140-89747159 MsG0880047702.01.T01:CDS 35.0%
! TGAATTTTAGACCTTAGGTG+AGG - Chr8:89744783-89744802 MsG0880047702.01.T01:intron 35.0%
!! ATTGACATTAGTTCTGTTGG+AGG - Chr8:89744651-89744670 MsG0880047702.01.T01:intron 35.0%
AAGTGGAAGGAACAACTTCT+TGG - Chr8:89744624-89744643 MsG0880047702.01.T01:intron 40.0%
AGAGCAACTCGAAAAGGATA+AGG - Chr8:89744478-89744497 MsG0880047702.01.T01:intron 40.0%
AGTGGCAATGAAAAAGGAAG+GGG - Chr8:89744352-89744371 MsG0880047702.01.T01:CDS 40.0%
CATCTGTTTATTTGGCCAGA+GGG - Chr8:89745943-89745962 MsG0880047702.01.T01:CDS 40.0%
CCCATGATTTCCGGAAATAA+GGG + Chr8:89746416-89746435 None:intergenic 40.0%
GACAGCACTAAAGAGATGAT+TGG - Chr8:89745498-89745517 MsG0880047702.01.T01:intron 40.0%
GACATACTCAGCTAGAACTA+AGG - Chr8:89745599-89745618 MsG0880047702.01.T01:intron 40.0%
GACCACACCATCTGTTTATT+TGG - Chr8:89745935-89745954 MsG0880047702.01.T01:CDS 40.0%
GTATTCATTCGCGAACTGAT+TGG + Chr8:89746892-89746911 None:intergenic 40.0%
TATTTCCGGAAATCATGGGA+GGG - Chr8:89746417-89746436 MsG0880047702.01.T01:intron 40.0%
TCCCATGATTTCCGGAAATA+AGG + Chr8:89746417-89746436 None:intergenic 40.0%
TGAAAGAAGGTTCTCGCTAT+AGG - Chr8:89745317-89745336 MsG0880047702.01.T01:intron 40.0%
TGACAGCACTAAGAGATGAT+TGG - Chr8:89745867-89745886 MsG0880047702.01.T01:CDS 40.0%
TGCAGTGATCATGAAGAAAG+TGG - Chr8:89744334-89744353 MsG0880047702.01.T01:CDS 40.0%
TTAAGTACACCAACACTGTC+TGG - Chr8:89745383-89745402 MsG0880047702.01.T01:intron 40.0%
TTATTTCCGGAAATCATGGG+AGG - Chr8:89746416-89746435 MsG0880047702.01.T01:intron 40.0%
! ACCTTAGGTGAGGAAGATTT+TGG - Chr8:89744793-89744812 MsG0880047702.01.T01:intron 40.0%
! ATCGGAAGTTTTTGTGTGTG+TGG + Chr8:89746245-89746264 None:intergenic 40.0%
! CAACTTTCAGCCCTTATTTC+CGG - Chr8:89746403-89746422 MsG0880047702.01.T01:intron 40.0%
! CATCTGGTTTATTTGCCAGA+GGG - Chr8:89745577-89745596 MsG0880047702.01.T01:intron 40.0%
! CCCTTATTTCCGGAAATCAT+GGG - Chr8:89746413-89746432 MsG0880047702.01.T01:intron 40.0%
! CCTGAGCCTTGCTATAAAAT+CGG - Chr8:89745228-89745247 MsG0880047702.01.T01:intron 40.0%
! CTGAGCCTTGCTATAAAATC+GGG - Chr8:89745229-89745248 MsG0880047702.01.T01:intron 40.0%
! TATCGCCCGATTTTATAGCA+AGG + Chr8:89745237-89745256 None:intergenic 40.0%
AACGTCATCATCATCGTCCT+CGG + Chr8:89744420-89744439 None:intergenic 45.0%
ACCAACACTGTCTGGAAAAC+TGG - Chr8:89745391-89745410 MsG0880047702.01.T01:intron 45.0%
ATGATGAGAGCTTGAGGAAG+TGG - Chr8:89744607-89744626 MsG0880047702.01.T01:intron 45.0%
ATTTCCGGAAATCATGGGAG+GGG - Chr8:89746418-89746437 MsG0880047702.01.T01:intron 45.0%
CAGGAAATCCTGAGGGTTTA+TGG - Chr8:89745287-89745306 MsG0880047702.01.T01:intron 45.0%
CCATCTGTTTATTTGGCCAG+AGG - Chr8:89745942-89745961 MsG0880047702.01.T01:CDS 45.0%
CCTCTGGCAAATAAACCAGA+TGG + Chr8:89745579-89745598 None:intergenic 45.0%
CCTCTGGCCAAATAAACAGA+TGG + Chr8:89745945-89745964 None:intergenic 45.0%
CTCAAGCTCTCATCATCCTA+AGG + Chr8:89744603-89744622 None:intergenic 45.0%
CTGGCATCAAGGGTAAGTAT+TGG - Chr8:89745784-89745803 MsG0880047702.01.T01:intron 45.0%
CTTAGGATGATGAGAGCTTG+AGG - Chr8:89744601-89744620 MsG0880047702.01.T01:intron 45.0%
GCCAAAATCTTCCTCACCTA+AGG + Chr8:89744797-89744816 None:intergenic 45.0%
GGCAAATAAACCAGATGGTG+TGG + Chr8:89745574-89745593 None:intergenic 45.0%
GGCATCAAGGGTAAGTACAT+TGG - Chr8:89745412-89745431 MsG0880047702.01.T01:intron 45.0%
GGCCAAATAAACAGATGGTG+TGG + Chr8:89745940-89745959 None:intergenic 45.0%
GTCTGGAAAACTGGCATCAA+GGG - Chr8:89745400-89745419 MsG0880047702.01.T01:intron 45.0%
TCTGGCATTTCATGCGTGTA+AGG + Chr8:89745546-89745565 None:intergenic 45.0%
TGTCTGGAAAACTGGCATCA+AGG - Chr8:89745399-89745418 MsG0880047702.01.T01:intron 45.0%
TGTTCTGGCATCAACAGTTG+AGG + Chr8:89746821-89746840 None:intergenic 45.0%
! CCATCTGGTTTATTTGCCAG+AGG - Chr8:89745576-89745595 MsG0880047702.01.T01:intron 45.0%
! CCGATTTTATAGCAAGGCTC+AGG + Chr8:89745231-89745250 None:intergenic 45.0%
! GCCCTTATTTCCGGAAATCA+TGG - Chr8:89746412-89746431 MsG0880047702.01.T01:intron 45.0%
!! GGAATAGAGGAGTACCTCTT+TGG - Chr8:89746637-89746656 MsG0880047702.01.T01:intron 45.0%
ACAGATGGTGTGGTCTCTTC+TGG + Chr8:89745930-89745949 None:intergenic 50.0%
ACCAGAGACAGGAAATCCTG+AGG - Chr8:89745279-89745298 MsG0880047702.01.T01:intron 50.0%
AGGCTCAGGAACTTCACTTC+TGG + Chr8:89745217-89745236 None:intergenic 50.0%
ATTCTTCCGGTACCAGAGAC+AGG - Chr8:89745268-89745287 MsG0880047702.01.T01:intron 50.0%
CCAGAGACAGGAAATCCTGA+GGG - Chr8:89745280-89745299 MsG0880047702.01.T01:intron 50.0%
GGATTTCCTGTCTCTGGTAC+CGG + Chr8:89745277-89745296 None:intergenic 50.0%
TCAGAGACACCAACACTGTC+TGG - Chr8:89745757-89745776 MsG0880047702.01.T01:intron 50.0%
TCTAGCTGAGTATGTCCCTC+TGG + Chr8:89745595-89745614 None:intergenic 50.0%
TGAGAGCTTGAGGAAGTGGA+AGG - Chr8:89744611-89744630 MsG0880047702.01.T01:intron 50.0%
TTCACCCCTCCCATGATTTC+CGG + Chr8:89746425-89746444 None:intergenic 50.0%
! ATATCGTGTCGGTGCTTCGT+AGG + Chr8:89744848-89744867 None:intergenic 50.0%
! GCCAGTTTTCCAGACAGTGT+TGG + Chr8:89745395-89745414 None:intergenic 50.0%
AGGAAGGGGCAACTCAGTAC+AGG - Chr8:89744366-89744385 MsG0880047702.01.T01:intron 55.0%
ATGCGTGTAAGGCTCTGCTG+AGG + Chr8:89745901-89745920 None:intergenic 55.0%
CCAGAAGAGACCACACCATC+TGG - Chr8:89745561-89745580 MsG0880047702.01.T01:intron 55.0%
CCAGATGGTGTGGTCTCTTC+TGG + Chr8:89745564-89745583 None:intergenic 55.0%
CCCTCAGGATTTCCTGTCTC+TGG + Chr8:89745283-89745302 None:intergenic 55.0%
GCGTGTAAGGCTCTGCTTGA+GGG + Chr8:89745533-89745552 None:intergenic 55.0%
GGAAATCATGGGAGGGGTGA+AGG - Chr8:89746424-89746443 MsG0880047702.01.T01:intron 55.0%
GGGAGGGGTGAAGGTTAAGT+TGG - Chr8:89746433-89746452 MsG0880047702.01.T01:intron 55.0%
GTCATCATCATCGTCCTCGG+TGG + Chr8:89744417-89744436 None:intergenic 55.0%
TGCGTGTAAGGCTCTGCTGA+GGG + Chr8:89745900-89745919 None:intergenic 55.0%
TGCGTGTAAGGCTCTGCTTG+AGG + Chr8:89745534-89745553 None:intergenic 55.0%
CAGTTCTGTTGCTGCCACCG+AGG - Chr8:89744400-89744419 MsG0880047702.01.T01:intron 60.0%
CGACCTGTCATCGTCAGGTC+GGG + Chr8:89744913-89744932 None:intergenic 60.0%
CTGTCATCGTCAGGTCGGGT+CGG + Chr8:89744909-89744928 None:intergenic 60.0%
GACCTGACGATGACAGGTCG+CGG - Chr8:89744913-89744932 MsG0880047702.01.T01:intron 60.0%
GCGACCTGTCATCGTCAGGT+CGG + Chr8:89744914-89744933 None:intergenic 60.0%
GCGTGTAAGGCTCTGCTGAG+GGG + Chr8:89745899-89745918 None:intergenic 60.0%
CACCGCGACCTGTCATCGTC+AGG + Chr8:89744918-89744937 None:intergenic 65.0%
CGACCCGACCTGACGATGAC+AGG - Chr8:89744907-89744926 MsG0880047702.01.T01:intron 65.0%
TCGTCAGGTCGGGTCGGATC+TGG + Chr8:89744903-89744922 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 89744308 89747168 89744308 ID=MsG0880047702.01;Name=MsG0880047702.01
Chr8 mRNA 89744308 89747168 89744308 ID=MsG0880047702.01.T01;Parent=MsG0880047702.01;Name=MsG0880047702.01.T01;_AED=0.41;_eAED=0.41;_QI=0|0|0|1|1|1|5|0|224
Chr8 exon 89746977 89747168 89746977 ID=MsG0880047702.01.T01:exon:16063;Parent=MsG0880047702.01.T01
Chr8 exon 89746804 89746870 89746804 ID=MsG0880047702.01.T01:exon:16062;Parent=MsG0880047702.01.T01
Chr8 exon 89746055 89746273 89746055 ID=MsG0880047702.01.T01:exon:16061;Parent=MsG0880047702.01.T01
Chr8 exon 89745856 89745980 89745856 ID=MsG0880047702.01.T01:exon:16060;Parent=MsG0880047702.01.T01
Chr8 exon 89744308 89744379 89744308 ID=MsG0880047702.01.T01:exon:16059;Parent=MsG0880047702.01.T01
Chr8 CDS 89746977 89747168 89746977 ID=MsG0880047702.01.T01:cds;Parent=MsG0880047702.01.T01
Chr8 CDS 89746804 89746870 89746804 ID=MsG0880047702.01.T01:cds;Parent=MsG0880047702.01.T01
Chr8 CDS 89746055 89746273 89746055 ID=MsG0880047702.01.T01:cds;Parent=MsG0880047702.01.T01
Chr8 CDS 89745856 89745980 89745856 ID=MsG0880047702.01.T01:cds;Parent=MsG0880047702.01.T01
Chr8 CDS 89744308 89744379 89744308 ID=MsG0880047702.01.T01:cds;Parent=MsG0880047702.01.T01
Gene Sequence

>MsG0880047702.01.T01

AAAACATGGATTCTGATCGTGAGATATGCAGTGATCATGAAGAAAGTGGCAATGAAAAAGGAAGGGGCAACTCAGTACAGGCACATGAGTGACAGTTCTGTTGCTGCCACCGAGGACGATGATGATGACGTTGATAAGAAGATTGATGTTGGTCCTCAATTCACTTTGAAAGAGCAACTCGAAAAGGATAAGGATGATGAGAGCTTGAGGAAGTGGAAGGAACAACTTCTTGGAAGTATTGACATTAGTTCTGTTGGAGAAACTCTGGAGCCAGAAGTGAAGTTCCTGAGCCTTGCTATAAAATCGGGCGATAGAGATGATATAATTCTTCCGGTACCAGAGACAGGAAATCCTGAGGGTTTATGGTTTACTTTGAAAGAAGGTTCTCGCTATAGGCTAGTGTTTACTTTCCAAGTAAACCATAATATCGTTTCGGGTCTTAAGTACACCAACACTGTCTGGAAAACTGGCATCAAGGTTGACAGCACTAAAGAGATGATTGGAACATTCAGCCCTCAAGCAGAGCCTTACACGCATGAAATGCCAGAAGAGACCACACCATCTGGTTTATTTGCCAGAGGGACATACTCAGCTAGAACTAAGTTTGTTGACGATGACAAAAAGTCGTATTTGGATATCAGCTACACTTTTGATATTCGGAAGGATTGGCTTTAG
Protein sequence

>MsG0880047702.01.T01

KTWILIVRYAVIMKKVAMKKEGATQYRHMSDSSVAATEDDDDDVDKKIDVGPQFTLKEQLEKDKDDESLRKWKEQLLGSIDISSVGETLEPEVKFLSLAIKSGDRDDIILPVPETGNPEGLWFTLKEGSRYRLVFTFQVNHNIVSGLKYTNTVWKTGIKVDSTKEMIGTFSPQAEPYTHEMPEETTPSGLFARGTYSARTKFVDDDKKSYLDISYTFDIRKDWL*