AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0001750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001750 MtrunA17_Chr8g0391741 98.200 1500 10 2 1 1499 1 1484 0.0 3009
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001750 AT1G14850.1 72.806 1504 361 11 1 1496 1 1464 0.0 2144

Find 411 sgRNAs with CRISPR-Local

Find 825 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACCAAATGTATTCAATTT+TGG 0.147828 1_1:-3465101 Msa0001750:CDS
GCGTGTTGCATTTGCAAAAT+TGG 0.197733 1_1:+3460652 None:intergenic
CAGTTGCTAGCCAAGGAATT+AGG 0.200530 1_1:-3459358 Msa0001750:CDS
TCACAAGCCTAGCTGTTTAA+AGG 0.209434 1_1:-3464721 Msa0001750:CDS
CAAGATTACTCTTTCCTCTA+TGG 0.211410 1_1:-3463846 Msa0001750:CDS
AAGCTTCAGGTTTATGTTCT+TGG 0.213755 1_1:-3465005 Msa0001750:CDS
TCAGGCACTTCATTTGAAAA+TGG 0.218295 1_1:-3463784 Msa0001750:CDS
CTTATAGATCAAGCTATTTC+AGG 0.232315 1_1:-3459937 Msa0001750:CDS
AGTCAAGTACTTTGAACTTT+TGG 0.241689 1_1:-3461821 Msa0001750:CDS
ACGTCCATGGAGACTAATTT+TGG 0.259396 1_1:+3458740 None:intergenic
GGACACCCAGCTGAACAATT+TGG 0.272008 1_1:+3462250 None:intergenic
GCCCATGCCCTACGTATTTC+AGG 0.275775 1_1:+3468541 None:intergenic
ACATCCAATTCTGTTCAAAA+TGG 0.277354 1_1:-3460707 Msa0001750:CDS
AGCATCCGTAATCTAAGATT+TGG 0.283755 1_1:+3459494 None:intergenic
CTGTACTTTGCTAACTATTC+TGG 0.285107 1_1:-3460000 Msa0001750:CDS
CAAATCTGATGATAGCTCTT+TGG 0.287559 1_1:+3460622 None:intergenic
TTTCCATGAGTATCTTTATC+AGG 0.289269 1_1:-3462211 Msa0001750:CDS
GAAGATTTCTACAATCGTTT+TGG 0.289778 1_1:-3464126 Msa0001750:CDS
GACCCCTCACGGAAGGAATT+TGG 0.296507 1_1:-3462336 Msa0001750:CDS
AAGTACCTCCCAGAGTTTAA+AGG 0.300673 1_1:+3460562 None:intergenic
TGCTGGAACTCTTATCCTTT+CGG 0.301665 1_1:-3464574 Msa0001750:CDS
AGTGCTTTGCGGTCTCTTAA+AGG 0.313525 1_1:-3462360 Msa0001750:CDS
GAATCCACCGCCTATTATTA+TGG 0.320721 1_1:+3459394 None:intergenic
TTAACGGCGATGTAGGGTTT+TGG 0.322368 1_1:+3469514 None:intergenic
AGAGTGGCGGGCAAAATTTC+CGG 0.323384 1_1:+3469556 None:intergenic
AACACGGCCTTCTCCTCCTT+GGG 0.325527 1_1:-3464691 Msa0001750:CDS
AGCCCTTGTTTCTGCTTGTA+AGG 0.325530 1_1:-3459582 Msa0001750:CDS
TAGCATGGGCCAGGTTGTTC+AGG 0.325776 1_1:-3463920 Msa0001750:CDS
ACTGGTTCTTCCATAATAAT+AGG 0.333058 1_1:-3459404 Msa0001750:CDS
GCATCCGTAATCTAAGATTT+GGG 0.338076 1_1:+3459495 None:intergenic
AAAGGAAGTTTAAGTGCTTC+AGG 0.340254 1_1:-3463802 Msa0001750:CDS
TATGAGCTTATTTATTCAAC+TGG 0.342352 1_1:-3465398 Msa0001750:CDS
GAGAATGAATTGTTGGAGTA+TGG 0.343375 1_1:-3462168 Msa0001750:CDS
GAGGAGTTCCCGGGCATTAC+GGG 0.344091 1_1:-3464460 Msa0001750:CDS
CTACCTGTAATGGTTATAAA+AGG 0.344326 1_1:-3463820 Msa0001750:CDS
AAGAGTTCCAGCAGAATAAT+AGG 0.349609 1_1:+3464584 None:intergenic
GGAAAATTCTGTCGGGTGAT+TGG 0.350381 1_1:+3462229 None:intergenic
TTTGGAACCATGGCTCTTGC+TGG 0.350797 1_1:-3464648 Msa0001750:CDS
TAGATGGCCAATACCTCAAC+AGG 0.354221 1_1:+3467726 None:intergenic
CGCGGTAAACCCCTTCTGTT+TGG 0.356475 1_1:+3458946 None:intergenic
GCTCCAAAATTGAATACATT+TGG 0.357663 1_1:+3465098 None:intergenic
CGAGGAGTTCCCGGGCATTA+CGG 0.358254 1_1:-3464461 Msa0001750:CDS
TTCAAAGTACTTGACTTGAT+TGG 0.358695 1_1:+3461828 None:intergenic
TAAAACTGATCTCGGAGAAT+TGG 0.359130 1_1:+3464149 None:intergenic
TTGACAATTCTTTGTTCCTC+TGG 0.359523 1_1:-3468513 Msa0001750:CDS
TCTCTAGGGTGAGTAGAATA+AGG 0.360839 1_1:+3469218 None:intergenic
AAGATCGAAGTTTGTGTTCA+AGG 0.362765 1_1:+3463722 None:intergenic
AGAGAGCTTCACCAGATCTA+AGG 0.363992 1_1:+3463340 None:intergenic
TTTAAGAAGGGCAATAGGTC+AGG 0.365266 1_1:+3462141 None:intergenic
CAGGCACTTCATTTGAAAAT+GGG 0.366839 1_1:-3463783 Msa0001750:CDS
TATGGTTGTGTAGCAGGATT+AGG 0.367725 1_1:-3463655 Msa0001750:CDS
TGTTCCTCGCCACTATATTC+AGG 0.369116 1_1:+3467831 None:intergenic
CTTCTGTTTGGCTCTGTGGA+AGG 0.372797 1_1:+3458958 None:intergenic
GGCTGGTGTTGAATCCATTC+AGG 0.373807 1_1:+3464745 None:intergenic
AAGGAAAATGCGGCCCTTAT+CGG 0.376997 1_1:+3465442 None:intergenic
TATGATCAATTGTTATCAAA+TGG 0.378369 1_1:-3459533 Msa0001750:CDS
TTAGTTGGAGTGTGCTGCTC+TGG 0.379312 1_1:-3465566 Msa0001750:CDS
TTTAAGAGTGAGAGAATTAA+CGG 0.380728 1_1:+3469498 None:intergenic
GTTTATGTTCTTGGACCAAT+TGG 0.382747 1_1:-3464996 Msa0001750:CDS
CAGTTCCATCACCAGGATAA+AGG 0.382913 1_1:+3459866 None:intergenic
AACTTCTCCGATGGGCCAAT+CGG 0.383511 1_1:-3461866 Msa0001750:CDS
CTATACTCAGAAATTGAGTT+TGG 0.384122 1_1:-3464348 Msa0001750:CDS
GGTGGTTCTGCATTGGGTGC+TGG 0.384567 1_1:-3463604 Msa0001750:CDS
TTGCTAAGATTAAAAGATAC+TGG 0.386459 1_1:+3467751 None:intergenic
GTTAGTGGCGGTCTCACCTT+TGG 0.394157 1_1:-3464666 Msa0001750:CDS
ATGATCAATTGTTATCAAAT+GGG 0.395420 1_1:-3459532 Msa0001750:CDS
AAGGCTTATATCTGCTCTAA+TGG 0.395958 1_1:-3463184 Msa0001750:CDS
TCTCCTCCTTGGGGTGTTAG+TGG 0.397551 1_1:-3464681 Msa0001750:CDS
GCGGTGGAGCCGCAAATAAA+AGG 0.397846 1_1:-3463522 Msa0001750:CDS
TCCTCCTTGGCAGTATATGT+TGG 0.401657 1_1:+3464253 None:intergenic
GTATCTTCTTTACCAGTTGA+AGG 0.401716 1_1:-3464432 Msa0001750:CDS
CAACACGGCCTTCTCCTCCT+TGG 0.402833 1_1:-3464692 Msa0001750:CDS
AAGGGAAGCTTGCTGTTCTT+CGG 0.404633 1_1:-3460793 Msa0001750:CDS
TGATCATATGCGTTCAATAC+AGG 0.404637 1_1:+3459548 None:intergenic
AGCCGCCTTAAAATGTCTAA+TGG 0.405006 1_1:+3464180 None:intergenic
GACTGAAGAGATGAAGCTTC+AGG 0.405306 1_1:-3465018 Msa0001750:CDS
CCTCCTTGGCAGTATATGTT+GGG 0.406408 1_1:+3464254 None:intergenic
CTTATTTATTCAACTGGCTC+AGG 0.407126 1_1:-3465392 Msa0001750:CDS
AAGTTTCTAATGTTTCATAT+TGG 0.408310 1_1:-3458800 Msa0001750:three_prime_UTR
GAACAGGTACGAGGAGTTCC+CGG 0.409786 1_1:-3464470 Msa0001750:CDS
GTAAGTGGTTCCATTCTATA+TGG 0.410972 1_1:-3463628 Msa0001750:CDS
AGTTGCTAGCCAAGGAATTA+GGG 0.411342 1_1:-3459357 Msa0001750:CDS
CATGTCACTCGTCTGATTCA+AGG 0.417185 1_1:-3463291 Msa0001750:CDS
TTTGAGGATCCAAGACTTGT+TGG 0.417277 1_1:-3464003 Msa0001750:CDS
AGTACCTCCCAGAGTTTAAA+GGG 0.418748 1_1:+3460563 None:intergenic
TGCTGTTCCCTTTAAACTCT+GGG 0.419511 1_1:-3460570 Msa0001750:CDS
TGAACAGTAGCTGAAGTATC+TGG 0.419603 1_1:+3464375 None:intergenic
GGACTCTATGGTTGTGTAGC+AGG 0.419623 1_1:-3463661 Msa0001750:CDS
TGTTGACCCTGTTGTTGAAA+TGG 0.420741 1_1:-3465075 Msa0001750:CDS
TGAGGGCAATGGAGTGCATT+AGG 0.421519 1_1:-3463371 Msa0001750:CDS
CAAAGAGGAACTAGAGCATA+TGG 0.422462 1_1:-3460756 Msa0001750:CDS
CATCCCCAAATCTTAGATTA+CGG 0.423921 1_1:-3459499 Msa0001750:CDS
TCGGATGGTATTGTATAATC+TGG 0.425433 1_1:+3465494 None:intergenic
TATGGTGGTGGTTCTGCATT+GGG 0.426235 1_1:-3463610 Msa0001750:CDS
GGGTTGCCCGAGCTACTATA+AGG 0.427377 1_1:-3462965 Msa0001750:CDS
TCCTCACCATCAGGTAATCT+AGG 0.432690 1_1:-3464492 Msa0001750:CDS
GGTGAGATGCAAACAATAGA+TGG 0.434239 1_1:+3464861 None:intergenic
TATAAGCCAAATTGTTCAGC+TGG 0.434986 1_1:-3462256 Msa0001750:CDS
CCTTCTAGCGGAAGCCTGAA+TGG 0.436243 1_1:-3464759 Msa0001750:CDS
AACCAGAGGAGAGGACTCTA+TGG 0.437359 1_1:-3463673 Msa0001750:CDS
TCCGTCAGTAGAAGGCCTTC+CGG 0.438022 1_1:+3461738 None:intergenic
ATATGGTGGTGGTTCTGCAT+TGG 0.439770 1_1:-3463611 Msa0001750:CDS
GTAGGAACTCCGTCAGTAGA+AGG 0.440301 1_1:+3461730 None:intergenic
CTTGGGCCCCGCCTTTATCC+TGG 0.440689 1_1:-3459877 Msa0001750:CDS
TTCTGTTTGGCTCTGTGGAA+GGG 0.440953 1_1:+3458959 None:intergenic
CCATTCAGGCTTCCGCTAGA+AGG 0.441659 1_1:+3464759 None:intergenic
TAGTCACAGCAGCTCTCTCC+AGG 0.443276 1_1:+3462908 None:intergenic
CCTGTAAAACTGCATTGCTT+AGG 0.445981 1_1:+3460894 None:intergenic
TTGTATCTTTCAATAAGAAC+AGG 0.454146 1_1:+3468604 None:intergenic
GGGTGCTGGTGACCGAAGTA+TGG 0.455558 1_1:-3463590 Msa0001750:CDS
ATGCTGTTCCCTTTAAACTC+TGG 0.456809 1_1:-3460571 Msa0001750:CDS
GACTATAGATGATGAGGAAA+AGG 0.457447 1_1:-3462890 Msa0001750:CDS
TTTAATGGCCCATCACCAAT+TGG 0.457665 1_1:+3464981 None:intergenic
AGAATGAAAGGTACCTCTCT+AGG 0.458345 1_1:+3469203 None:intergenic
TTTCTAATGTTTCATATTGG+AGG 0.458663 1_1:-3458797 Msa0001750:three_prime_UTR
TGCTGCTCTGGAGGAGCAGA+TGG 0.459140 1_1:-3465554 Msa0001750:CDS
TGGTTGAGGTAGCGAATACA+TGG 0.459389 1_1:-3468636 Msa0001750:CDS
AGGCAGTTGCTCCTTAGATC+TGG 0.460170 1_1:-3463351 Msa0001750:CDS
CTCGTTGTCAGTGATCGAAT+TGG 0.461037 1_1:-3469305 Msa0001750:CDS
ACCCCTTCTGTTTGGCTCTG+TGG 0.461256 1_1:+3458954 None:intergenic
TCATTATAAGCATCACCTGC+AGG 0.463829 1_1:+3462450 None:intergenic
TTTCGATTCAAGGGTAGATA+AGG 0.464480 1_1:+3464839 None:intergenic
TACTCAGAAATTGAGTTTGG+TGG 0.465253 1_1:-3464345 Msa0001750:CDS
GAAAGCATTCGTCCTTCAAC+TGG 0.465686 1_1:+3464420 None:intergenic
TTCGATTCAAGGGTAGATAA+GGG 0.467152 1_1:+3464840 None:intergenic
GAGAGAATTAACGGCGATGT+AGG 0.467571 1_1:+3469507 None:intergenic
CCATCAGGTAATCTAGGAAC+AGG 0.468552 1_1:-3464486 Msa0001750:CDS
ATAATAAGCGACCTCATGTA+TGG 0.470198 1_1:+3462101 None:intergenic
ACAAGGAGTGAAGGCATAGT+TGG 0.470366 1_1:+3464540 None:intergenic
GTATGCGTCACTGCTGGTCT+AGG 0.472775 1_1:-3465347 Msa0001750:CDS
CTTCAGCACCATGGGCATGA+TGG 0.474911 1_1:-3464220 Msa0001750:CDS
AAGATTACTCTTTCCTCTAT+GGG 0.474913 1_1:-3463845 Msa0001750:CDS
CTTCTTAGCCGTGGAAGCCC+TGG 0.475577 1_1:-3462926 Msa0001750:CDS
TGTGTTTAATGCTAGCTTCG+AGG 0.475776 1_1:-3464083 Msa0001750:CDS
CACAGGATGGGTACAGCCAC+TGG 0.475790 1_1:-3459422 Msa0001750:CDS
AGCACTCAGTCCTCACCATC+AGG 0.477707 1_1:-3464501 Msa0001750:CDS
AGACTCTGGAACTTTGCTTA+AGG 0.478360 1_1:+3462840 None:intergenic
TGCTGCTGGTGGATTTAGCA+TGG 0.478956 1_1:-3463935 Msa0001750:CDS
AAGGAATTTGGCTCTCCCAT+TGG 0.479497 1_1:-3462324 Msa0001750:CDS
AAGTGTGGCATGTACCGATA+AGG 0.481528 1_1:-3465456 Msa0001750:CDS
GTCTAGGAAGTGTAATTTCA+AGG 0.481768 1_1:-3465331 Msa0001750:intron
AAATCACAAGTGTAGCAAAC+AGG 0.482274 1_1:-3459331 Msa0001750:intron
TGTGGCATGCCAACAAGTCT+TGG 0.482330 1_1:+3463994 None:intergenic
ACACATCGCAGCCGCCTCGC+CGG 0.482650 1_1:+3464101 None:intergenic
GTTGGCATGCCACAACTTGA+AGG 0.483372 1_1:-3463985 Msa0001750:CDS
TAAAGAAAATTGCTGAAGAA+AGG 0.483809 1_1:-3464962 Msa0001750:CDS
AGGTCTTGAGAATGAATTGT+TGG 0.485566 1_1:-3462175 Msa0001750:CDS
GCAGTATATGTTGGGTTGAG+AGG 0.486330 1_1:+3464262 None:intergenic
AAATAATCATCAGTGCTTTG+CGG 0.486588 1_1:-3462371 Msa0001750:CDS
TGCTCTGTGCTAAAGAGACT+TGG 0.487524 1_1:-3459895 Msa0001750:CDS
TTGTAGGAGAGATTAAATAC+AGG 0.487762 1_1:-3459638 Msa0001750:intron
GCCCTTGTTTCTGCTTGTAA+GGG 0.488966 1_1:-3459581 Msa0001750:CDS
AATAGGCGGTGGATTCTCAT+TGG 0.489381 1_1:-3459387 Msa0001750:CDS
GAATCATGTGAAAGGGCGTC+TGG 0.489834 1_1:-3464306 Msa0001750:CDS
ATCTAGTAATCCAGTGTCGC+TGG 0.491871 1_1:+3460823 None:intergenic
TGCTCATGCATTGCTAAGAC+TGG 0.492006 1_1:-3461761 Msa0001750:CDS
CTCTTAAAGGTGACCCCTCA+CGG 0.493295 1_1:-3462347 Msa0001750:CDS
TATCAGGCTATGATAGACTT+AGG 0.493691 1_1:-3462195 Msa0001750:CDS
GTAGAAAACTTCGGAGAACT+AGG 0.495280 1_1:+3458691 None:intergenic
CAGCAATGTTATTGCAGAGA+AGG 0.495495 1_1:-3464037 Msa0001750:CDS
GAGGCAGCCTATTATTCTGC+TGG 0.495786 1_1:-3464591 Msa0001750:CDS
GGATTACTAGATATGCTTGA+AGG 0.497013 1_1:-3460812 Msa0001750:CDS
ATACAGTTTCCCGTAATGCC+CGG 0.497593 1_1:+3464451 None:intergenic
GCTGTGTAAAACCTCAGAAC+TGG 0.497828 1_1:+3460730 None:intergenic
GTTCTTGGACCAATTGGTGA+TGG 0.498305 1_1:-3464990 Msa0001750:CDS
ACTTCTCCGATGGGCCAATC+GGG 0.498551 1_1:-3461865 Msa0001750:CDS
TTGTATGCAGACTATCCATC+GGG 0.499733 1_1:-3463756 Msa0001750:CDS
TACAATGCGGCTGGTGGGGA+AGG 0.500968 1_1:-3468586 Msa0001750:CDS
TTCGTAAATTTCAGAGTGGC+GGG 0.501286 1_1:+3469544 None:intergenic
GTCTATATATTCACACAGGA+TGG 0.502227 1_1:-3459435 Msa0001750:CDS
TCCTGCAGAATTAGCTGCCA+TGG 0.502902 1_1:-3463482 Msa0001750:CDS
CCCCGCCTTTATCCTGGTGA+TGG 0.503361 1_1:-3459871 Msa0001750:CDS
ACTGAACTAGGGCTTGTTGA+AGG 0.503774 1_1:+3463256 None:intergenic
CAGACTCCTTATAGTAGCTC+GGG 0.504829 1_1:+3462959 None:intergenic
TCTATGGGAACTACCTGTAA+TGG 0.507594 1_1:-3463830 Msa0001750:CDS
CTCAATGGAATCATGTGAAA+GGG 0.510286 1_1:-3464313 Msa0001750:CDS
GCAAAATTGGCATCAACAGT+TGG 0.510359 1_1:+3460665 None:intergenic
TATTCGCTACCTCAACCAAA+GGG 0.512128 1_1:+3468641 None:intergenic
GATGTAGCGATTTCGATTCA+AGG 0.512965 1_1:+3464829 None:intergenic
TGGTGGATTTAGCATGGGCC+AGG 0.513192 1_1:-3463929 Msa0001750:CDS
AGTGTGGCATGTACCGATAA+GGG 0.514553 1_1:-3465455 Msa0001750:CDS
GCATTACTGCCTTCAAGTTG+TGG 0.514636 1_1:+3463976 None:intergenic
CACCCTTACAAGCAGAAACA+AGG 0.515133 1_1:+3459579 None:intergenic
AATAAATAAGCTCATATATG+TGG 0.515246 1_1:+3465405 None:intergenic
GACTGCAACAACTTCTCCGA+TGG 0.515482 1_1:-3461875 Msa0001750:CDS
GGTTCCATTCTATATGGTGG+TGG 0.515640 1_1:-3463622 Msa0001750:CDS
AGCTCTCTCCAGGGCTTCCA+CGG 0.518172 1_1:+3462918 None:intergenic
GTACGTAAGTCTGCAGACTC+TGG 0.518327 1_1:+3462826 None:intergenic
TCAGACTCCTTATAGTAGCT+CGG 0.518482 1_1:+3462958 None:intergenic
ACTCGGAGTTCCAGCGACAC+TGG 0.519773 1_1:-3460833 Msa0001750:CDS
CATTAGTAAGAGATTAAGAG+AGG 0.520434 1_1:-3462986 Msa0001750:CDS
TCCATCACCAGGATAAAGGC+GGG 0.521274 1_1:+3459870 None:intergenic
ATGCAAACAATAGATGGCTT+TGG 0.521780 1_1:+3464867 None:intergenic
GATCAAGCTATTTCAGGAGG+TGG 0.524721 1_1:-3459931 Msa0001750:CDS
TACTCATGGAAAATTCTGTC+GGG 0.525023 1_1:+3462222 None:intergenic
AACCATAGAGTCCTCTCCTC+TGG 0.527672 1_1:+3463671 None:intergenic
ATTGTCATCTTCAGCACCAT+GGG 0.527861 1_1:-3464228 Msa0001750:CDS
ACAGCTAGGCTTGTGATGGC+TGG 0.528884 1_1:+3464728 None:intergenic
CGGTCTCACCTTTGGAACCA+TGG 0.530959 1_1:-3464658 Msa0001750:CDS
CGCAACATCTTCATCTCCAA+CGG 0.531854 1_1:+3459607 None:intergenic
TGTAACGAAACTTCTGCAAA+TGG 0.532012 1_1:+3465524 None:intergenic
GCTAATTCTGCAGGACTGTA+CGG 0.532984 1_1:+3463490 None:intergenic
CTTACCTCTTCAGAAGGCAC+AGG 0.534688 1_1:-3462481 Msa0001750:CDS
AAAGATACAATGCGGCTGGT+GGG 0.534865 1_1:-3468591 Msa0001750:CDS
TACAGTTTCCCGTAATGCCC+GGG 0.534887 1_1:+3464452 None:intergenic
ACGACATAGGTGCTCCCGAT+TGG 0.535145 1_1:+3461851 None:intergenic
AAATCTTCTAAAACTGATCT+CGG 0.535522 1_1:+3464141 None:intergenic
AACAGGTACGAGGAGTTCCC+GGG 0.536433 1_1:-3464469 Msa0001750:CDS
TCAACTAGTTTGTTCTGAAG+AGG 0.536462 1_1:-3463223 Msa0001750:CDS
TTCCTGAAATACGTAGGGCA+TGG 0.536753 1_1:-3468543 Msa0001750:CDS
TCATCGGTGGTGGAATGTCG+TGG 0.537196 1_1:-3469367 Msa0001750:exon
TCCATGGCAGCTAATTCTGC+AGG 0.537400 1_1:+3463481 None:intergenic
TTCTAGTGGTACTTCGTGAG+TGG 0.538447 1_1:-3459463 Msa0001750:CDS
GATTGTGAAGCAGATCCAAT+GGG 0.538651 1_1:+3462309 None:intergenic
TGCAACAAATAGCGATGGGT+TGG 0.538910 1_1:-3460864 Msa0001750:CDS
GATTACTAGATATGCTTGAA+GGG 0.540149 1_1:-3460811 Msa0001750:CDS
GAAAGATACAATGCGGCTGG+TGG 0.543305 1_1:-3468592 Msa0001750:CDS
AGAGAATTAACGGCGATGTA+GGG 0.543668 1_1:+3469508 None:intergenic
ATGAAATGTTAACTGAACTA+GGG 0.544395 1_1:+3463245 None:intergenic
GATGAAATGTTAACTGAACT+AGG 0.545744 1_1:+3463244 None:intergenic
GAATGAAAGGTACCTCTCTA+GGG 0.546021 1_1:+3469204 None:intergenic
TCACCTTGAGAAAGCTGCAC+TGG 0.546075 1_1:-3459818 Msa0001750:intron
TCAAGCACAAGAACTGCTGC+TGG 0.546532 1_1:-3463949 Msa0001750:CDS
CAACTAGTTTGTTCTGAAGA+GGG 0.546779 1_1:-3463222 Msa0001750:CDS
ATTGGCATCAACAGTTGGAC+TGG 0.547726 1_1:+3460670 None:intergenic
TTACACTGGTACAGATGGTA+GGG 0.547983 1_1:-3463022 Msa0001750:CDS
ATACTCATGGAAAATTCTGT+CGG 0.548225 1_1:+3462221 None:intergenic
AAGATGACAATCCTCCTCCT+TGG 0.550107 1_1:+3464240 None:intergenic
AAGTGCTTGTTCTCTGACTG+TGG 0.550328 1_1:+3462416 None:intergenic
TCCTGAAATACGTAGGGCAT+GGG 0.550636 1_1:-3468542 Msa0001750:CDS
CATGCATTGCTAAGACTGGC+CGG 0.551545 1_1:-3461757 Msa0001750:CDS
TAGCCTGATAAAGATACTCA+TGG 0.553452 1_1:+3462208 None:intergenic
TTCTTGGACCAATTGGTGAT+GGG 0.554076 1_1:-3464989 Msa0001750:CDS
GCAATATAGGCCCACCTCCA+TGG 0.555455 1_1:+3463465 None:intergenic
ATTGAAAGATACAATGCGGC+TGG 0.555495 1_1:-3468595 Msa0001750:CDS
CATGGGCCAGGTTGTTCAGG+AGG 0.555690 1_1:-3463917 Msa0001750:CDS
GAACAAGCTATTTGTGCTGT+TGG 0.556209 1_1:-3467813 Msa0001750:CDS
GTTGGAGTGTGCTGCTCTGG+AGG 0.556678 1_1:-3465563 Msa0001750:CDS
AACATATACTGCCAAGGAGG+AGG 0.556709 1_1:-3464251 Msa0001750:CDS
TAGCAAAGTACAGCATCTCC+AGG 0.557530 1_1:+3460010 None:intergenic
TTAAGAAGGGCAATAGGTCA+GGG 0.557890 1_1:+3462142 None:intergenic
TGGTGGTTATGAGAGCTCAA+TGG 0.557994 1_1:-3464328 Msa0001750:CDS
CAAAATCGATCAAATGAATG+AGG 0.558020 1_1:+3458891 None:intergenic
GCATATGGCTTCCAGTTCTG+AGG 0.558452 1_1:-3460741 Msa0001750:CDS
GGTGCTCCCGATTGGCCCAT+CGG 0.559421 1_1:+3461859 None:intergenic
GCTCTGTGCTAAAGAGACTT+GGG 0.559721 1_1:-3459894 Msa0001750:CDS
TGTAGGAGAGATTAAATACA+GGG 0.559992 1_1:-3459637 Msa0001750:intron
TCTTCCATAATAATAGGCGG+TGG 0.560252 1_1:-3459398 Msa0001750:CDS
CGCTAGAAGGAGAGGTGGAT+AGG 0.560743 1_1:+3464772 None:intergenic
CGAGCTGAGAAGAAACTTCA+CGG 0.561694 1_1:+3469282 None:intergenic
AAGCTTCTAGAGATTCTTCG+AGG 0.561996 1_1:+3469258 None:intergenic
ATTACACTGGTACAGATGGT+AGG 0.562022 1_1:-3463023 Msa0001750:CDS
AAAGGAGACTCTCGCGCGGG+AGG 0.562901 1_1:-3462872 Msa0001750:CDS
AACAATTTCCATCATGCCCA+TGG 0.563013 1_1:+3464212 None:intergenic
GCTCAATGGAATCATGTGAA+AGG 0.563015 1_1:-3464314 Msa0001750:CDS
GTAGCTGAAGTATCTGGTAG+AGG 0.563574 1_1:+3464381 None:intergenic
ATAGCCTGTGCCTTCTGAAG+AGG 0.563702 1_1:+3462477 None:intergenic
CTAACACCCCAAGGAGGAGA+AGG 0.564873 1_1:+3464684 None:intergenic
GCCGGAAGGCCTTCTACTGA+CGG 0.568282 1_1:-3461739 Msa0001750:CDS
AGAAAAGTATGCGTCACTGC+TGG 0.568708 1_1:-3465353 Msa0001750:CDS
AGTATGGTAAGAACCTTGTT+CGG 0.568865 1_1:-3463574 Msa0001750:CDS
AATCACAAAGATGCACATCA+TGG 0.569157 1_1:-3464930 Msa0001750:CDS
AGGGTGACCGTCTTGCTACA+AGG 0.569436 1_1:-3463203 Msa0001750:CDS
AAGAATGCAACAAATAGCGA+TGG 0.570412 1_1:-3460869 Msa0001750:CDS
GGTCAGTGTCCTGAATATAG+TGG 0.570424 1_1:-3467840 Msa0001750:CDS
TTTGGAATATGCACCGAACA+AGG 0.571990 1_1:+3463561 None:intergenic
AATCTTAGCAACCCCTGTTG+AGG 0.572946 1_1:-3467739 Msa0001750:intron
AGCACAAGAACTGCTGCTGG+TGG 0.573089 1_1:-3463946 Msa0001750:CDS
AACTAGGCTCGAATGACGGC+CGG 0.573397 1_1:+3458707 None:intergenic
TTGACTTGATTGGACGACAT+AGG 0.573427 1_1:+3461838 None:intergenic
CTGCACTTGATCCAGCCTCT+CGG 0.573634 1_1:-3462287 Msa0001750:CDS
AGCAAGAGCCATGGTTCCAA+AGG 0.575322 1_1:+3464650 None:intergenic
ATTATACAATACCATCCGAT+GGG 0.575885 1_1:-3465490 Msa0001750:CDS
GTGACAACCTTTAAACAGCT+AGG 0.576071 1_1:+3464714 None:intergenic
AATACAGGGATTGAATCCGT+TGG 0.576107 1_1:-3459623 Msa0001750:CDS
GTAACGGTACTTCCCTTGCA+TGG 0.576252 1_1:+3465616 None:intergenic
CATCGGTGGTGGAATGTCGT+GGG 0.576519 1_1:-3469366 Msa0001750:exon
ATGTAGCGATTTCGATTCAA+GGG 0.576698 1_1:+3464830 None:intergenic
CAGTATTACACTGGTACAGA+TGG 0.577792 1_1:-3463027 Msa0001750:CDS
AGGAGTGAAGGCATAGTTGG+AGG 0.578653 1_1:+3464543 None:intergenic
CTTCAAGTTCTTTAAAGCCG+CGG 0.578805 1_1:+3458928 None:intergenic
GCACAGGCTATCGACCCTGC+AGG 0.579756 1_1:-3462465 Msa0001750:CDS
TCTGGCAAACTGTGGGCAAG+AGG 0.580519 1_1:-3464288 Msa0001750:CDS
TTTCGTAAATTTCAGAGTGG+CGG 0.581396 1_1:+3469543 None:intergenic
TTAAACAGCTAGGCTTGTGA+TGG 0.581424 1_1:+3464724 None:intergenic
ATGGGTTGGTTAGTTCTACT+CGG 0.582163 1_1:-3460850 Msa0001750:CDS
AAGGACTTGCATAGCCCCGA+TGG 0.584420 1_1:+3463741 None:intergenic
CATGGACGTGTCATCTATGC+CGG 0.585820 1_1:-3458726 Msa0001750:three_prime_UTR
GATTATACAATACCATCCGA+TGG 0.585823 1_1:-3465491 Msa0001750:CDS
ACAAGGTTCTTACCATACTT+CGG 0.586235 1_1:+3463578 None:intergenic
ATTAGTAAGAGATTAAGAGA+GGG 0.587750 1_1:-3462985 Msa0001750:CDS
CAAGGTATTACGTGTTGAAG+CGG 0.587807 1_1:-3461798 Msa0001750:CDS
GTTGTATGCAGACTATCCAT+CGG 0.588221 1_1:-3463757 Msa0001750:CDS
TGCTGGTAGACCTCAAAATG+AGG 0.588234 1_1:-3464631 Msa0001750:CDS
GTATTCGCTACCTCAACCAA+AGG 0.588301 1_1:+3468640 None:intergenic
TGCTGTGACTATAGATGATG+AGG 0.588314 1_1:-3462896 Msa0001750:CDS
CACGACCAGCAAGGAAAATG+CGG 0.589351 1_1:+3465432 None:intergenic
AGAACCACCACCATATAGAA+TGG 0.589649 1_1:+3463618 None:intergenic
AGGCACTTCATTTGAAAATG+GGG 0.592406 1_1:-3463782 Msa0001750:CDS
CTTCCACAGAGCCAAACAGA+AGG 0.592958 1_1:-3458957 Msa0001750:CDS
TGATCAATTGTTATCAAATG+GGG 0.593219 1_1:-3459531 Msa0001750:CDS
GCTCAGCCTCCTGAACAACC+TGG 0.595457 1_1:+3463911 None:intergenic
TTTATTCAACTGGCTCAGGA+TGG 0.595573 1_1:-3465388 Msa0001750:CDS
TTACAAATTCTTCTTAGCCG+TGG 0.596969 1_1:-3462935 Msa0001750:CDS
ATACCAGTGCAGCTTTCTCA+AGG 0.598542 1_1:+3459815 None:intergenic
CTGTTTAAAACAAGGAGTGA+AGG 0.598709 1_1:+3464531 None:intergenic
AATATGGAGTCTAATGGCGG+TGG 0.599519 1_1:-3463538 Msa0001750:CDS
CCTCCTTGGGGTGTTAGTGG+CGG 0.600152 1_1:-3464678 Msa0001750:CDS
TGTGTCACAGGTGAGGGCAA+TGG 0.601138 1_1:-3463382 Msa0001750:intron
GCTGCTGGTGGATTTAGCAT+GGG 0.601558 1_1:-3463934 Msa0001750:CDS
AAGATACAATGCGGCTGGTG+GGG 0.602762 1_1:-3468590 Msa0001750:CDS
TATCTTTCAATAAGAACAGG+AGG 0.602805 1_1:+3468607 None:intergenic
TAATAAGCGACCTCATGTAT+GGG 0.605151 1_1:+3462102 None:intergenic
AGATTGTGAAGCAGATCCAA+TGG 0.606543 1_1:+3462308 None:intergenic
GAATATTTCCTGAAATACGT+AGG 0.606570 1_1:-3468549 Msa0001750:CDS
CATTATAAGCATCACCTGCA+GGG 0.606825 1_1:+3462451 None:intergenic
TCCACAGAGCCAAACAGAAG+GGG 0.607197 1_1:-3458955 Msa0001750:CDS
GAGCCAAATTCCTTCCGTGA+GGG 0.608008 1_1:+3462333 None:intergenic
ATTGACCTCTGCTCAAGAGT+AGG 0.608819 1_1:+3461712 None:intergenic
AATATTTCCTGAAATACGTA+GGG 0.609500 1_1:-3468548 Msa0001750:CDS
AGCCAAATTCCTTCCGTGAG+GGG 0.610828 1_1:+3462334 None:intergenic
TTCCACAGAGCCAAACAGAA+GGG 0.611280 1_1:-3458956 Msa0001750:CDS
TAAAGGTGACCCCTCACGGA+AGG 0.611952 1_1:-3462343 Msa0001750:CDS
AGGTCTACCAGCAAGAGCCA+TGG 0.612188 1_1:+3464641 None:intergenic
AGTTTGCTTACCTCTTCAGA+AGG 0.615018 1_1:-3462487 Msa0001750:CDS
CATTGCTAAGACTGGCCGGA+AGG 0.617769 1_1:-3461753 Msa0001750:CDS
TCTAGTGGTACTTCGTGAGT+GGG 0.617984 1_1:-3459462 Msa0001750:CDS
TCCTAGATTACCTGATGGTG+AGG 0.620705 1_1:+3464491 None:intergenic
ACAGGTATATGACTGAAGTA+CGG 0.621524 1_1:-3458989 Msa0001750:intron
CAGGCTTCCGCTAGAAGGAG+AGG 0.622102 1_1:+3464764 None:intergenic
ATTCGTGACGTCACCAACGC+TGG 0.622785 1_1:-3469329 Msa0001750:CDS
ACTTGTCATCGTAACCCCAT+CGG 0.622842 1_1:+3465475 None:intergenic
CAACCCAACATATACTGCCA+AGG 0.623440 1_1:-3464257 Msa0001750:CDS
ACTGCAACAACTTCTCCGAT+GGG 0.623712 1_1:-3461874 Msa0001750:CDS
ATTACAGGTAGTTCCCATAG+AGG 0.624222 1_1:+3463832 None:intergenic
TCGAATCCCTGTTTAAAACA+AGG 0.626469 1_1:+3464523 None:intergenic
TCTATATATTCACACAGGAT+GGG 0.626575 1_1:-3459434 Msa0001750:CDS
ACATTGCTCCAGTATTACAC+TGG 0.627645 1_1:-3463036 Msa0001750:intron
CGGCATAGATGACACGTCCA+TGG 0.628874 1_1:+3458727 None:intergenic
AGAATGCAACAAATAGCGAT+GGG 0.629921 1_1:-3460868 Msa0001750:CDS
GTTTAAAGGTTGTCACAACA+CGG 0.631503 1_1:-3464707 Msa0001750:CDS
TTCCATCACCAGGATAAAGG+CGG 0.632649 1_1:+3459869 None:intergenic
TTCGCTACCTCAACCAAAGG+GGG 0.634180 1_1:+3468643 None:intergenic
AGAGACAGATACTGTATGCA+CGG 0.635091 1_1:-3465040 Msa0001750:CDS
ATAGATCAAGCTATTTCAGG+AGG 0.638506 1_1:-3459934 Msa0001750:CDS
GATTGTCATCTTCAGCACCA+TGG 0.639774 1_1:-3464229 Msa0001750:CDS
TAGCATTGTCAGAGAGACAT+GGG 0.640474 1_1:-3459965 Msa0001750:CDS
AGTGGTTCCATTCTATATGG+TGG 0.641876 1_1:-3463625 Msa0001750:CDS
GCAGGATTAGGAGATGTAAG+TGG 0.642995 1_1:-3463643 Msa0001750:CDS
GCTTCCGCTAGAAGGAGAGG+TGG 0.643058 1_1:+3464767 None:intergenic
GAGCCGCAAATAAAAGGCAA+AGG 0.643744 1_1:-3463516 Msa0001750:CDS
AAAGGGCGTCTGGCAAACTG+TGG 0.645972 1_1:-3464296 Msa0001750:CDS
ATAAGCCAAATTGTTCAGCT+GGG 0.646096 1_1:-3462255 Msa0001750:CDS
CCATCACCAGGATAAAGGCG+GGG 0.648462 1_1:+3459871 None:intergenic
ACTGACAACGAGACCAGCGT+TGG 0.648890 1_1:+3469316 None:intergenic
GTCATCGTAACCCCATCGGA+TGG 0.648967 1_1:+3465479 None:intergenic
CGTAATCTAAGATTTGGGGA+TGG 0.649285 1_1:+3459500 None:intergenic
GTAGCATTGTCAGAGAGACA+TGG 0.650313 1_1:-3459966 Msa0001750:CDS
TTGGAGGTGATGCATCCGAA+AGG 0.650794 1_1:+3464559 None:intergenic
TATTATTATGGAAGAACCAG+TGG 0.650914 1_1:+3459406 None:intergenic
CATGGAGGTAGACAATCAAG+TGG 0.653447 1_1:-3464912 Msa0001750:CDS
GCTTATATCTGCTCTAATGG+AGG 0.653828 1_1:-3463181 Msa0001750:intron
TTATTCTACTCACCCTAGAG+AGG 0.654466 1_1:-3469216 Msa0001750:intron
TGTGGCCATCACGACCAGCA+AGG 0.655087 1_1:+3465423 None:intergenic
GGTCTTGCAAAATCAAAGCA+CGG 0.657151 1_1:-3467792 Msa0001750:CDS
GGTATTGTATAATCTGGCAA+CGG 0.658098 1_1:+3465500 None:intergenic
TGCAGAATTAGCTGCCATGG+AGG 0.658293 1_1:-3463479 Msa0001750:intron
GATGCTGAGATCTGTTCTAG+TGG 0.658820 1_1:-3459477 Msa0001750:CDS
ACACGGCCTTCTCCTCCTTG+GGG 0.659201 1_1:-3464690 Msa0001750:CDS
AAGGGCGTCTGGCAAACTGT+GGG 0.660618 1_1:-3464295 Msa0001750:CDS
AGGAAAAGGAGACTCTCGCG+CGG 0.660690 1_1:-3462876 Msa0001750:CDS
GGAAAAGGAGACTCTCGCGC+GGG 0.661993 1_1:-3462875 Msa0001750:CDS
GAACGTACAGTTGCTAGCCA+AGG 0.663076 1_1:-3459365 Msa0001750:CDS
GTGTCCTGAATATAGTGGCG+AGG 0.666227 1_1:-3467835 Msa0001750:CDS
TACACTGGTACAGATGGTAG+GGG 0.666518 1_1:-3463021 Msa0001750:CDS
AGTCACAGCAGCTCTCTCCA+GGG 0.666999 1_1:+3462909 None:intergenic
AGACCGCCACTAACACCCCA+AGG 0.667315 1_1:+3464675 None:intergenic
ATCTGGTAGAGGTAAAACAT+CGG 0.667887 1_1:+3464392 None:intergenic
TGGGGTTACGATGACAAGTG+TGG 0.668689 1_1:-3465471 Msa0001750:CDS
GGGTTTCGTAAATTTCAGAG+TGG 0.669536 1_1:+3469540 None:intergenic
GGATCTCTCATTGAAAGTCG+AGG 0.671076 1_1:-3464610 Msa0001750:CDS
TAAGATCTAGAAGGAACCAG+AGG 0.671121 1_1:-3463687 Msa0001750:CDS
CCTGTTCCTAGATTACCTGA+TGG 0.672525 1_1:+3464486 None:intergenic
ACCCTTACAAGCAGAAACAA+GGG 0.674854 1_1:+3459580 None:intergenic
CTATCCACCTCTCCTTCTAG+CGG 0.675230 1_1:-3464771 Msa0001750:CDS
CCCAACATATACTGCCAAGG+AGG 0.676631 1_1:-3464254 Msa0001750:CDS
ATATAAGCCTTGTAGCAAGA+CGG 0.677301 1_1:+3463196 None:intergenic
TGTTCCCTTTAAACTCTGGG+AGG 0.678115 1_1:-3460567 Msa0001750:intron
TCTAGAAGGAACCAGAGGAG+AGG 0.679190 1_1:-3463682 Msa0001750:CDS
CAAACAGAAGGGGTTTACCG+CGG 0.679346 1_1:-3458945 Msa0001750:CDS
GAGTTCCTACTCTTGAGCAG+AGG 0.686075 1_1:-3461717 Msa0001750:intron
CTATGTCTATATATTCACAC+AGG 0.687534 1_1:-3459439 Msa0001750:CDS
GGAGAACTAGGCTCGAATGA+CGG 0.689124 1_1:+3458703 None:intergenic
GGTTGAGGTAGCGAATACAT+GGG 0.689973 1_1:-3468635 Msa0001750:CDS
AATGAATTGTTGGAGTATGG+AGG 0.690712 1_1:-3462165 Msa0001750:CDS
GTAATCTAGGAACAGGTACG+AGG 0.690748 1_1:-3464479 Msa0001750:CDS
ACCACTTATCAAAACGCCAG+AGG 0.691648 1_1:+3468497 None:intergenic
TGGTCGTACACCCATACATG+AGG 0.697547 1_1:-3462112 Msa0001750:intron
CATCCGTAATCTAAGATTTG+GGG 0.697597 1_1:+3459496 None:intergenic
AGAGCCAAATTCCTTCCGTG+AGG 0.698450 1_1:+3462332 None:intergenic
TCTTATTGAAAGATACAATG+CGG 0.704503 1_1:-3468599 Msa0001750:CDS
GGTTCTTCCATAATAATAGG+CGG 0.706852 1_1:-3459401 Msa0001750:CDS
ATTCGCTACCTCAACCAAAG+GGG 0.712229 1_1:+3468642 None:intergenic
CACAAAGATGCACATCATGG+AGG 0.714834 1_1:-3464927 Msa0001750:CDS
ACGGTACTTCCCTTGCATGG+AGG 0.725360 1_1:+3465619 None:intergenic
AGATGGCCAATACCTCAACA+GGG 0.726892 1_1:+3467727 None:intergenic
GGTATATGACTGAAGTACGG+AGG 0.731109 1_1:-3458986 Msa0001750:CDS
TTATACAATACCATCCGATG+GGG 0.731321 1_1:-3465489 Msa0001750:CDS
GATGGCCAATACCTCAACAG+GGG 0.742049 1_1:+3467728 None:intergenic
CCGCCACTAACACCCCAAGG+AGG 0.760733 1_1:+3464678 None:intergenic
TGTATGCAGACTATCCATCG+GGG 0.803566 1_1:-3463755 Msa0001750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATTGAATCTAAAAAA+CGG + chr1_1:3459160-3459179 None:intergenic 10.0%
!! AATAATATTATTAGGTTATA+GGG - chr1_1:3459317-3459336 Msa0001750:intron 10.0%
!!! TTTTATCTAGAAATTTTTAT+GGG + chr1_1:3460229-3460248 None:intergenic 10.0%
!!! ATTTTATCTAGAAATTTTTA+TGG + chr1_1:3460230-3460249 None:intergenic 10.0%
!! GATCATTAATTTAAATAATT+AGG - chr1_1:3460327-3460346 Msa0001750:intron 10.0%
!! AATAAATTTATGAAAAAATC+AGG - chr1_1:3462341-3462360 Msa0001750:CDS 10.0%
!! ATAAATTTATGAAAAAATCA+GGG - chr1_1:3462342-3462361 Msa0001750:CDS 10.0%
!!! GATGTTATTTTTAAAATTAT+TGG - chr1_1:3464894-3464913 Msa0001750:CDS 10.0%
!!! TATTATTAGTAATTTGTAAT+TGG + chr1_1:3465686-3465705 None:intergenic 10.0%
!!! ATTAATTTTCATGTTTTATA+TGG + chr1_1:3467135-3467154 None:intergenic 10.0%
!! TATTCATATTGTTAATTATT+AGG - chr1_1:3469036-3469055 Msa0001750:intron 10.0%
!! ATTCATATTGTTAATTATTA+GGG - chr1_1:3469037-3469056 Msa0001750:intron 10.0%
!! TTCATATTGTTAATTATTAA+TGG - chr1_1:3469110-3469129 Msa0001750:intron 10.0%
!! AGTGATACAATAATATTATT+AGG - chr1_1:3459309-3459328 Msa0001750:intron 15.0%
!! CAATAATATTATTAGGTTAT+AGG - chr1_1:3459316-3459335 Msa0001750:intron 15.0%
!!! TTTATCTAGAAATTTTTATG+GGG + chr1_1:3460228-3460247 None:intergenic 15.0%
!! TAATTTAAATAATTAGGTGA+AGG - chr1_1:3460333-3460352 Msa0001750:intron 15.0%
!!! TATTTGTTAAAAAAAGTGTT+TGG + chr1_1:3460969-3460988 None:intergenic 15.0%
!!! TAATTCTATTAACTTGTAAA+AGG + chr1_1:3462188-3462207 None:intergenic 15.0%
!! GTTAATAGAATTAATAGTAT+AGG - chr1_1:3462195-3462214 Msa0001750:CDS 15.0%
!! AATTAACTGATAAAAAGAAT+GGG + chr1_1:3462736-3462755 None:intergenic 15.0%
!! AAATTAACTGATAAAAAGAA+TGG + chr1_1:3462737-3462756 None:intergenic 15.0%
!!! TTTTATCAGTTAATTTTAGT+TGG - chr1_1:3462741-3462760 Msa0001750:intron 15.0%
!! TGAAGATAAAAATTATTTCA+TGG + chr1_1:3465187-3465206 None:intergenic 15.0%
!!! GTTTTTTGTTTTGTAAAATT+AGG - chr1_1:3467397-3467416 Msa0001750:intron 15.0%
!!! GTTTTTTAAGATAGAAAAAT+AGG - chr1_1:3468007-3468026 Msa0001750:intron 15.0%
!! ATTTAATATAATGGTGTATT+GGG + chr1_1:3469227-3469246 None:intergenic 15.0%
!! AATTTAATATAATGGTGTAT+TGG + chr1_1:3469228-3469247 None:intergenic 15.0%
!! AATCAGCAAATTTAATATAA+TGG + chr1_1:3469236-3469255 None:intergenic 15.0%
!!! TTAGTTTTTATTTTCATGAC+CGG - chr1_1:3458747-3458766 Msa0001750:three_prime_UTR 20.0%
!! AAATCAAAAGTAAAATCACA+TGG + chr1_1:3459186-3459205 None:intergenic 20.0%
!! TCTAACTTCATTAAGTTTAA+AGG - chr1_1:3459869-3459888 Msa0001750:CDS 20.0%
!! TGTTTCATAAATTCTTACTT+GGG - chr1_1:3460082-3460101 Msa0001750:intron 20.0%
!!! TTATCTAGAAATTTTTATGG+GGG + chr1_1:3460227-3460246 None:intergenic 20.0%
!! GAAGTGAATTAAAAAATAGA+TGG + chr1_1:3460615-3460634 None:intergenic 20.0%
!!! AATTTTCATCTTTTCAATTC+CGG - chr1_1:3461000-3461019 Msa0001750:intron 20.0%
!! CTCAATATAGAAATCTAATA+TGG - chr1_1:3461165-3461184 Msa0001750:intron 20.0%
!! AACTTGATATTAGGATAATA+TGG + chr1_1:3461223-3461242 None:intergenic 20.0%
!!! TAAAGGTAATTAGTCTTTTT+TGG - chr1_1:3461834-3461853 Msa0001750:CDS 20.0%
!! TGATAAAGATCATAAGTAAT+TGG - chr1_1:3462062-3462081 Msa0001750:intron 20.0%
!! GTAAATAGAAGGAAATAATT+AGG - chr1_1:3462364-3462383 Msa0001750:CDS 20.0%
!! CTAATATTGTCAAATTAACA+AGG - chr1_1:3462427-3462446 Msa0001750:CDS 20.0%
!! ACACAAGTATTAAAAATCTT+GGG + chr1_1:3462549-3462568 None:intergenic 20.0%
!! ATTAACTGATAAAAAGAATG+GGG + chr1_1:3462735-3462754 None:intergenic 20.0%
!! AATAAATAAGCTCATATATG+TGG + chr1_1:3462920-3462939 None:intergenic 20.0%
!!! ATACCAAATGTATTCAATTT+TGG - chr1_1:3463221-3463240 Msa0001750:CDS 20.0%
!! AAAAATTCTTAAGATCTAGA+AGG - chr1_1:3464626-3464645 Msa0001750:CDS 20.0%
!!! TGTATCATCATTAGTTTTTA+TGG - chr1_1:3465744-3465763 Msa0001750:intron 20.0%
!! TAACAAATTATTAGAGAGAA+AGG + chr1_1:3466248-3466267 None:intergenic 20.0%
!!! TCTCTCTAATAATTTGTTAA+TGG - chr1_1:3466249-3466268 Msa0001750:intron 20.0%
!! TAATTGTATATTAACACACT+GGG + chr1_1:3466947-3466966 None:intergenic 20.0%
!! ATAATTGTATATTAACACAC+TGG + chr1_1:3466948-3466967 None:intergenic 20.0%
!! TATGATCAATTGTTATCAAA+TGG - chr1_1:3468789-3468808 Msa0001750:intron 20.0%
!! ATGATCAATTGTTATCAAAT+GGG - chr1_1:3468790-3468809 Msa0001750:intron 20.0%
!! AAGTTTCTAATGTTTCATAT+TGG - chr1_1:3469522-3469541 Msa0001750:five_prime_UTR 20.0%
! TTTAAGAGTGAGAGAATTAA+CGG + chr1_1:3458827-3458846 None:intergenic 25.0%
! TGAAATTGCTATATGTAATC+TGG - chr1_1:3459258-3459277 Msa0001750:intron 25.0%
! GAAATTGCTATATGTAATCT+GGG - chr1_1:3459259-3459278 Msa0001750:intron 25.0%
! GAAAACAGCTTATACAAAAA+CGG + chr1_1:3459457-3459476 None:intergenic 25.0%
! GCTTATGAAAATAAGCTAAA+AGG - chr1_1:3459494-3459513 Msa0001750:CDS 25.0%
! TTGTATCTTTCAATAAGAAC+AGG + chr1_1:3459721-3459740 None:intergenic 25.0%
! TCTTATTGAAAGATACAATG+CGG - chr1_1:3459723-3459742 Msa0001750:intron 25.0%
! AATATTTCCTGAAATACGTA+GGG - chr1_1:3459774-3459793 Msa0001750:intron 25.0%
! AATTTATGAAACAGTCTATG+GGG + chr1_1:3460075-3460094 None:intergenic 25.0%
! GAATTTATGAAACAGTCTAT+GGG + chr1_1:3460076-3460095 None:intergenic 25.0%
! AGAATTTATGAAACAGTCTA+TGG + chr1_1:3460077-3460096 None:intergenic 25.0%
! CTGTTTCATAAATTCTTACT+TGG - chr1_1:3460081-3460100 Msa0001750:intron 25.0%
!! TATCTAGAAATTTTTATGGG+GGG + chr1_1:3460226-3460245 None:intergenic 25.0%
! TTTCTGTTATATAATTGCTC+TGG - chr1_1:3460298-3460317 Msa0001750:intron 25.0%
!! CATTAGCACGTTTAAAATAT+TGG + chr1_1:3460427-3460446 None:intergenic 25.0%
! TTGCTAAGATTAAAAGATAC+TGG + chr1_1:3460574-3460593 None:intergenic 25.0%
!! CATTTGTGTTAGTTTGAATT+AGG - chr1_1:3460724-3460743 Msa0001750:CDS 25.0%
! GTTGAGAAAAAAATATTCCT+GGG - chr1_1:3460791-3460810 Msa0001750:CDS 25.0%
! AAAAATATTCCTGGGTATAA+AGG - chr1_1:3460799-3460818 Msa0001750:CDS 25.0%
! AAATCTATGCAGAATATCAT+GGG + chr1_1:3460892-3460911 None:intergenic 25.0%
! AAAATCTATGCAGAATATCA+TGG + chr1_1:3460893-3460912 None:intergenic 25.0%
!!! ACTTTTTTTAACAAATACCC+AGG - chr1_1:3460972-3460991 Msa0001750:intron 25.0%
! AAGATGAAAATTTGATTCCT+GGG + chr1_1:3460992-3461011 None:intergenic 25.0%
! AAAGATGAAAATTTGATTCC+TGG + chr1_1:3460993-3461012 None:intergenic 25.0%
!! ATTTTCATCTTTTCAATTCC+GGG - chr1_1:3461001-3461020 Msa0001750:intron 25.0%
!!! TTTTTCAATGTGAGACTTTA+GGG + chr1_1:3461072-3461091 None:intergenic 25.0%
!!! TTTTTTCAATGTGAGACTTT+AGG + chr1_1:3461073-3461092 None:intergenic 25.0%
! TCTGAAGAGTTTATAAAAAG+TGG - chr1_1:3461100-3461119 Msa0001750:intron 25.0%
! ATAAATTGTCCTTACAAAAC+CGG + chr1_1:3461144-3461163 None:intergenic 25.0%
! ATTAGATCATCATAATGATC+AGG - chr1_1:3461189-3461208 Msa0001750:intron 25.0%
! TTAGATCATCATAATGATCA+GGG - chr1_1:3461190-3461209 Msa0001750:intron 25.0%
! TTGATATTAGGATAATATGG+TGG + chr1_1:3461220-3461239 None:intergenic 25.0%
! ACACTATTGAACTTGATATT+AGG + chr1_1:3461232-3461251 None:intergenic 25.0%
! AATATCAAGTTCAATAGTGT+TGG - chr1_1:3461232-3461251 Msa0001750:intron 25.0%
! ATATCAAGTTCAATAGTGTT+GGG - chr1_1:3461233-3461252 Msa0001750:intron 25.0%
! ACTCAATATAGAAACCTAAT+AGG - chr1_1:3461374-3461393 Msa0001750:intron 25.0%
! CTATCATTGTTTAGTAGAAA+TGG + chr1_1:3461403-3461422 None:intergenic 25.0%
! TCTTATAATTGAATGCTATC+TGG - chr1_1:3461486-3461505 Msa0001750:intron 25.0%
! AAAATGTTACAATGGATAAG+TGG - chr1_1:3461575-3461594 Msa0001750:intron 25.0%
! TAGAATAGTCCAATAATTAG+AGG - chr1_1:3461764-3461783 Msa0001750:CDS 25.0%
! TTATAACTCTCTTACTAGAT+TGG + chr1_1:3461817-3461836 None:intergenic 25.0%
! ATCTAGTAAGAGAGTTATAA+AGG - chr1_1:3461817-3461836 Msa0001750:CDS 25.0%
!! ATATATCAACCTGTTTTATG+TGG - chr1_1:3461959-3461978 Msa0001750:intron 25.0%
! ATGATCTTTATCAATGCTAT+TGG + chr1_1:3462055-3462074 None:intergenic 25.0%
! AAAAAATCAGGGTAAATAGA+AGG - chr1_1:3462353-3462372 Msa0001750:CDS 25.0%
! CACACAAGTATTAAAAATCT+TGG + chr1_1:3462550-3462569 None:intergenic 25.0%
!! CAAGATTTTTAATACTTGTG+TGG - chr1_1:3462548-3462567 Msa0001750:intron 25.0%
! TATGAGCTTATTTATTCAAC+TGG - chr1_1:3462924-3462943 Msa0001750:CDS 25.0%
! AAGACAAATTACTAAGGAAT+TGG + chr1_1:3463179-3463198 None:intergenic 25.0%
!! TCTTCAGCAATTTTCTTTAA+TGG + chr1_1:3463359-3463378 None:intergenic 25.0%
! TAAAGAAAATTGCTGAAGAA+AGG - chr1_1:3463360-3463379 Msa0001750:CDS 25.0%
!!! TGATGGAAATTGTTTTTAAC+AGG - chr1_1:3464119-3464138 Msa0001750:CDS 25.0%
!!! AAATCTTCTAAAACTGATCT+CGG + chr1_1:3464184-3464203 None:intergenic 25.0%
! ATGAAATGTTAACTGAACTA+GGG + chr1_1:3465080-3465099 None:intergenic 25.0%
! ATTAGTAAGAGATTAAGAGA+GGG - chr1_1:3465337-3465356 Msa0001750:CDS 25.0%
!!! AGGTATATATTTTTGTTACC+TGG - chr1_1:3465544-3465563 Msa0001750:CDS 25.0%
!! ATATTCAGTTTTCACAGAAA+TGG + chr1_1:3465577-3465596 None:intergenic 25.0%
! AACCACTAATGTGTTTATAT+AGG - chr1_1:3465622-3465641 Msa0001750:CDS 25.0%
!! TCATTTCTTTTGTATCTCTT+TGG - chr1_1:3466652-3466671 Msa0001750:intron 25.0%
!! AAACCCATCTAAAATATAAG+TGG + chr1_1:3467056-3467075 None:intergenic 25.0%
! TTGAAAACTAAACGTACATA+AGG + chr1_1:3467173-3467192 None:intergenic 25.0%
! GTTTCAGATAAAAATCAAAG+AGG - chr1_1:3467551-3467570 Msa0001750:intron 25.0%
!! TAAACCATTTTGAACAGAAT+TGG + chr1_1:3467622-3467641 None:intergenic 25.0%
!!! TGATAATGAACAACTTTTAG+AGG - chr1_1:3467870-3467889 Msa0001750:intron 25.0%
!!! TTTCTAAGACATGTATTGTT+TGG - chr1_1:3467951-3467970 Msa0001750:intron 25.0%
! GATAGAAAAATAGGAATTTG+AGG - chr1_1:3468016-3468035 Msa0001750:intron 25.0%
! TGTCACAAAAAAGAAAGAAA+TGG + chr1_1:3468097-3468116 None:intergenic 25.0%
! CAAACTTATCGAACTAATAA+CGG - chr1_1:3468258-3468277 Msa0001750:intron 25.0%
!! ATGAATTCATGTCTTTTTGT+AGG - chr1_1:3468668-3468687 Msa0001750:intron 25.0%
! TGATCAATTGTTATCAAATG+GGG - chr1_1:3468791-3468810 Msa0001750:intron 25.0%
!!! ATGGTTGACATTGTTTTTTT+TGG - chr1_1:3469129-3469148 Msa0001750:intron 25.0%
!!! CCACAACTAAAATTTTTTGT+TGG + chr1_1:3469192-3469211 None:intergenic 25.0%
!!! CCAACAAAAAATTTTAGTTG+TGG - chr1_1:3469189-3469208 Msa0001750:intron 25.0%
! TCTGAATAACATTTACTTAC+AGG - chr1_1:3469315-3469334 Msa0001750:CDS 25.0%
! TTTCTAATGTTTCATATTGG+AGG - chr1_1:3469525-3469544 Msa0001750:five_prime_UTR 25.0%
TATCTTTCAATAAGAACAGG+AGG + chr1_1:3459718-3459737 None:intergenic 30.0%
GAATATTTCCTGAAATACGT+AGG - chr1_1:3459773-3459792 Msa0001750:intron 30.0%
AGGCAACTTAAACAAAACAT+AGG + chr1_1:3459911-3459930 None:intergenic 30.0%
ACTGCCTAACAAGAAAATAT+AGG + chr1_1:3459934-3459953 None:intergenic 30.0%
! AATGGGGTATTAATAAAGAG+GGG + chr1_1:3459990-3460009 None:intergenic 30.0%
! CAATGGGGTATTAATAAAGA+GGG + chr1_1:3459991-3460010 None:intergenic 30.0%
ATACAGAATCTTAACCAATG+GGG + chr1_1:3460006-3460025 None:intergenic 30.0%
CATACAGAATCTTAACCAAT+GGG + chr1_1:3460007-3460026 None:intergenic 30.0%
ACATACAGAATCTTAACCAA+TGG + chr1_1:3460008-3460027 None:intergenic 30.0%
CAGAACATTGAAAACGTAAA+AGG + chr1_1:3460033-3460052 None:intergenic 30.0%
AATAGCTTAAACTGTTACAG+AGG + chr1_1:3460122-3460141 None:intergenic 30.0%
ATTGTTGTATCATTGTTGCA+AGG - chr1_1:3460152-3460171 Msa0001750:intron 30.0%
TTGTTGTATCATTGTTGCAA+GGG - chr1_1:3460153-3460172 Msa0001750:intron 30.0%
TGACTAAGCATTTAAGCATT+TGG - chr1_1:3460182-3460201 Msa0001750:intron 30.0%
! AGGTGAAGGAATAATGTTTT+AGG - chr1_1:3460347-3460366 Msa0001750:intron 30.0%
!!! CATTTTAGAACACAATTCGT+TGG + chr1_1:3460637-3460656 None:intergenic 30.0%
GTTTGAATTAGGAACTAACA+TGG - chr1_1:3460735-3460754 Msa0001750:CDS 30.0%
AATTAGGAACTAACATGGTT+AGG - chr1_1:3460740-3460759 Msa0001750:CDS 30.0%
ATTAGGAACTAACATGGTTA+GGG - chr1_1:3460741-3460760 Msa0001750:CDS 30.0%
!! TTATACCCATGTTTGTTATG+AGG - chr1_1:3460769-3460788 Msa0001750:CDS 30.0%
GGTTGAGAAAAAAATATTCC+TGG - chr1_1:3460790-3460809 Msa0001750:CDS 30.0%
! ATGGGAATAATGGAAGTTAT+GGG + chr1_1:3460846-3460865 None:intergenic 30.0%
! TTTTCAATGTGAGACTTTAG+GGG + chr1_1:3461071-3461090 None:intergenic 30.0%
! CTATTTTCAATGTGAGACTT+AGG + chr1_1:3461282-3461301 None:intergenic 30.0%
AAAATCAGCTTGTAATGTGA+GGG + chr1_1:3461339-3461358 None:intergenic 30.0%
!! CATTACAAGCTGATTTTGTA+AGG - chr1_1:3461342-3461361 Msa0001750:intron 30.0%
GTATGAAATTGAATTGTGAG+TGG - chr1_1:3461515-3461534 Msa0001750:intron 30.0%
TGTCACAGAAAATGTTACAA+TGG - chr1_1:3461567-3461586 Msa0001750:intron 30.0%
ACAACCATCAGTGAATAATT+TGG - chr1_1:3461633-3461652 Msa0001750:intron 30.0%
TACACCAAATTATTCACTGA+TGG + chr1_1:3461640-3461659 None:intergenic 30.0%
GAAAGAAAACCACATAAAAC+AGG + chr1_1:3461971-3461990 None:intergenic 30.0%
! TTTATGTGGTTTTCTTTCTG+TGG - chr1_1:3461973-3461992 Msa0001750:intron 30.0%
! TACCAAGTACACTTTAGAAA+GGG - chr1_1:3462218-3462237 Msa0001750:CDS 30.0%
! TAAGGCTACTATTTTCTCTT+TGG - chr1_1:3462260-3462279 Msa0001750:CDS 30.0%
! AAGGCTACTATTTTCTCTTT+GGG - chr1_1:3462261-3462280 Msa0001750:CDS 30.0%
TCTCTACTCTATTTATCTTC+TGG + chr1_1:3462405-3462424 None:intergenic 30.0%
! TCCTTTTATCCACCAATTAA+AGG - chr1_1:3462630-3462649 Msa0001750:intron 30.0%
! CCTTTTATCCACCAATTAAA+GGG - chr1_1:3462631-3462650 Msa0001750:intron 30.0%
AAAAAGAATGGGGTAAGTAA+CGG + chr1_1:3462725-3462744 None:intergenic 30.0%
ATTATACAATACCATCCGAT+GGG - chr1_1:3462832-3462851 Msa0001750:CDS 30.0%
TAGCACAAGATTAAAAAAGC+AGG + chr1_1:3463022-3463041 None:intergenic 30.0%
AACATTTACCTGCAAAAATG+AGG + chr1_1:3463150-3463169 None:intergenic 30.0%
ACAGCTAAGACAAATTACTA+AGG + chr1_1:3463185-3463204 None:intergenic 30.0%
GCTCCAAAATTGAATACATT+TGG + chr1_1:3463227-3463246 None:intergenic 30.0%
CAAAAACCATTTCAACAACA+GGG + chr1_1:3463256-3463275 None:intergenic 30.0%
TCAAAAACCATTTCAACAAC+AGG + chr1_1:3463257-3463276 None:intergenic 30.0%
!!! TTCACTCCTTGTTTTAAACA+GGG - chr1_1:3463793-3463812 Msa0001750:CDS 30.0%
CTATACTCAGAAATTGAGTT+TGG - chr1_1:3463974-3463993 Msa0001750:CDS 30.0%
! GAAGATTTCTACAATCGTTT+TGG - chr1_1:3464196-3464215 Msa0001750:CDS 30.0%
AAGATTACTCTTTCCTCTAT+GGG - chr1_1:3464477-3464496 Msa0001750:CDS 30.0%
CTACCTGTAATGGTTATAAA+AGG - chr1_1:3464502-3464521 Msa0001750:CDS 30.0%
! CTTCCTTTTATAACCATTAC+AGG + chr1_1:3464508-3464527 None:intergenic 30.0%
TCCAAAAATATGGAGTCTAA+TGG - chr1_1:3464778-3464797 Msa0001750:CDS 30.0%
AAAAATATGGAGTCTAATGG+CGG - chr1_1:3464781-3464800 Msa0001750:CDS 30.0%
GATGAAATGTTAACTGAACT+AGG + chr1_1:3465081-3465100 None:intergenic 30.0%
TTCAAAAGTTTACACGTCAA+TGG - chr1_1:3465203-3465222 Msa0001750:intron 30.0%
CATTAGTAAGAGATTAAGAG+AGG - chr1_1:3465336-3465355 Msa0001750:CDS 30.0%
AGCCTATATAAACACATTAG+TGG + chr1_1:3465627-3465646 None:intergenic 30.0%
TATAGGCTATTCTAACCTTA+TGG - chr1_1:3465639-3465658 Msa0001750:intron 30.0%
ACTAATGATGATACATGACA+TGG + chr1_1:3465739-3465758 None:intergenic 30.0%
AAATAATCATCAGTGCTTTG+CGG - chr1_1:3465951-3465970 Msa0001750:intron 30.0%
ATACTCATGGAAAATTCTGT+CGG + chr1_1:3466104-3466123 None:intergenic 30.0%
TTTCCATGAGTATCTTTATC+AGG - chr1_1:3466111-3466130 Msa0001750:intron 30.0%
! TTCAAAGTACTTGACTTGAT+TGG + chr1_1:3466497-3466516 None:intergenic 30.0%
! AGTCAAGTACTTTGAACTTT+TGG - chr1_1:3466501-3466520 Msa0001750:intron 30.0%
GAGATACAAAAGAAATGACA+AGG + chr1_1:3466650-3466669 None:intergenic 30.0%
TAATTGCTTCAAATCTCATC+AGG - chr1_1:3466706-3466725 Msa0001750:intron 30.0%
GTGAATATTGTCATCATAGT+TGG - chr1_1:3466742-3466761 Msa0001750:intron 30.0%
ATCCACTAAAGCTAATTCAA+CGG + chr1_1:3466917-3466936 None:intergenic 30.0%
TCTTGAAATAACAGACTTCA+AGG + chr1_1:3466994-3467013 None:intergenic 30.0%
!! TTCGCCACTTATATTTTAGA+TGG - chr1_1:3467049-3467068 Msa0001750:intron 30.0%
!! TCGCCACTTATATTTTAGAT+GGG - chr1_1:3467050-3467069 Msa0001750:intron 30.0%
GATTACTAGATATGCTTGAA+GGG - chr1_1:3467511-3467530 Msa0001750:intron 30.0%
ACATCCAATTCTGTTCAAAA+TGG - chr1_1:3467615-3467634 Msa0001750:intron 30.0%
AACTCAAGATATTTCTCATC+TGG - chr1_1:3467833-3467852 Msa0001750:CDS 30.0%
AATACATGTCTTAGAAATCG+TGG + chr1_1:3467948-3467967 None:intergenic 30.0%
AGAAAGAAATGGCAAATAGT+TGG + chr1_1:3468086-3468105 None:intergenic 30.0%
! CTTATAGATCAAGCTATTTC+AGG - chr1_1:3468385-3468404 Msa0001750:intron 30.0%
! TCTAGAGTATCTTTCAGTTT+GGG - chr1_1:3468604-3468623 Msa0001750:CDS 30.0%
CTATGTCTATATATTCACAC+AGG - chr1_1:3468883-3468902 Msa0001750:intron 30.0%
TCTATATATTCACACAGGAT+GGG - chr1_1:3468888-3468907 Msa0001750:intron 30.0%
TATTATTATGGAAGAACCAG+TGG + chr1_1:3468919-3468938 None:intergenic 30.0%
! ACTGGTTCTTCCATAATAAT+AGG - chr1_1:3468918-3468937 Msa0001750:intron 30.0%
CAAAATCGATCAAATGAATG+AGG + chr1_1:3469434-3469453 None:intergenic 30.0%
!! TTTTGGAAAAAGGGGTAAAA+AGG + chr1_1:3469568-3469587 None:intergenic 30.0%
!! GAGACTAATTTTGGAAAAAG+GGG + chr1_1:3469576-3469595 None:intergenic 30.0%
!! GGAGACTAATTTTGGAAAAA+GGG + chr1_1:3469577-3469596 None:intergenic 30.0%
!! TGGAGACTAATTTTGGAAAA+AGG + chr1_1:3469578-3469597 None:intergenic 30.0%
!! TTTTCCAAAATTAGTCTCCA+TGG - chr1_1:3469578-3469597 Msa0001750:five_prime_UTR 30.0%
TTTCGTAAATTTCAGAGTGG+CGG + chr1_1:3458782-3458801 None:intergenic 35.0%
TAGAGAGAGTGAAGAATGAA+AGG + chr1_1:3459134-3459153 None:intergenic 35.0%
ATGTAATCTGGGTACATTAC+AGG - chr1_1:3459270-3459289 Msa0001750:intron 35.0%
TGGGTACATTACAGGTTATA+GGG - chr1_1:3459278-3459297 Msa0001750:intron 35.0%
GCAATCAATCAGAAAAAACG+TGG + chr1_1:3459638-3459657 None:intergenic 35.0%
TTGACAATTCTTTGTTCCTC+TGG - chr1_1:3459809-3459828 Msa0001750:intron 35.0%
TTAAGTTTAAAGGCTGAGAC+TGG - chr1_1:3459879-3459898 Msa0001750:CDS 35.0%
! GCCTCCTATATTTTCTTGTT+AGG - chr1_1:3459927-3459946 Msa0001750:CDS 35.0%
GCCTAACAAGAAAATATAGG+AGG + chr1_1:3459931-3459950 None:intergenic 35.0%
! ATGGGGTATTAATAAAGAGG+GGG + chr1_1:3459989-3460008 None:intergenic 35.0%
! CCAATGGGGTATTAATAAAG+AGG + chr1_1:3459992-3460011 None:intergenic 35.0%
CCTCTTTATTAATACCCCAT+TGG - chr1_1:3459989-3460008 Msa0001750:CDS 35.0%
!! TCTAACATTGCTGTTTCCTT+AGG - chr1_1:3460456-3460475 Msa0001750:intron 35.0%
!! CTAACATTGCTGTTTCCTTA+GGG - chr1_1:3460457-3460476 Msa0001750:intron 35.0%
TAACACAAATGATGTTGCTC+GGG + chr1_1:3460715-3460734 None:intergenic 35.0%
CTAACACAAATGATGTTGCT+CGG + chr1_1:3460716-3460735 None:intergenic 35.0%
CTCAACCTCATAACAAACAT+GGG + chr1_1:3460777-3460796 None:intergenic 35.0%
TCTCAACCTCATAACAAACA+TGG + chr1_1:3460778-3460797 None:intergenic 35.0%
! CATGGGAATAATGGAAGTTA+TGG + chr1_1:3460847-3460866 None:intergenic 35.0%
CATAACTTCCATTATTCCCA+TGG - chr1_1:3460845-3460864 Msa0001750:CDS 35.0%
ATCTCTTTCCATGGGAATAA+TGG + chr1_1:3460856-3460875 None:intergenic 35.0%
ATTATTCCCATGGAAAGAGA+TGG - chr1_1:3460855-3460874 Msa0001750:CDS 35.0%
TTATTCCCATGGAAAGAGAT+GGG - chr1_1:3460856-3460875 Msa0001750:CDS 35.0%
! TTGTAACTTCCAATTTTCCC+AGG - chr1_1:3460927-3460946 Msa0001750:intron 35.0%
GCAAATAACTTGACATTCCT+GGG + chr1_1:3460947-3460966 None:intergenic 35.0%
TTTCAATGTGAGACTTTAGG+GGG + chr1_1:3461070-3461089 None:intergenic 35.0%
CAAAATCAGCTTGTAATGTG+AGG + chr1_1:3461340-3461359 None:intergenic 35.0%
AGTAGAAATGGCAACCTATT+AGG + chr1_1:3461391-3461410 None:intergenic 35.0%
ATAGCACTTCAACCAATGAA+AGG + chr1_1:3461448-3461467 None:intergenic 35.0%
GAAATGTAGAAGTTCGTCTT+AGG - chr1_1:3461682-3461701 Msa0001750:intron 35.0%
CTCTCTCTACCTCTAATTAT+TGG + chr1_1:3461776-3461795 None:intergenic 35.0%
! TTTTGGACAAAATGCATCGT+AGG - chr1_1:3461851-3461870 Msa0001750:CDS 35.0%
! ATGCATCGTAGGATTTTATG+AGG - chr1_1:3461862-3461881 Msa0001750:CDS 35.0%
TCTGTGGTTGAATATTACCT+TGG - chr1_1:3461989-3462008 Msa0001750:intron 35.0%
TGGTTGAATATTACCTTGGT+TGG - chr1_1:3461993-3462012 Msa0001750:intron 35.0%
CAATGCTATTGGAGAACTTT+AGG + chr1_1:3462044-3462063 None:intergenic 35.0%
! GTACCAAGTACACTTTAGAA+AGG - chr1_1:3462217-3462236 Msa0001750:CDS 35.0%
! AAGTACACTTTAGAAAGGGA+GGG - chr1_1:3462222-3462241 Msa0001750:CDS 35.0%
GGGTGATTTAGCTAATGTTA+AGG - chr1_1:3462242-3462261 Msa0001750:CDS 35.0%
CTACTCTATTTATCTTCTGG+AGG + chr1_1:3462402-3462421 None:intergenic 35.0%
TAGAAAATCCAGCAGCATAT+TGG - chr1_1:3462493-3462512 Msa0001750:CDS 35.0%
GATCTTGTAAGATGTTCTCA+TGG + chr1_1:3462612-3462631 None:intergenic 35.0%
! CCCTTTAATTGGTGGATAAA+AGG + chr1_1:3462634-3462653 None:intergenic 35.0%
! TCCACCAATTAAAGGGTTTT+AGG - chr1_1:3462638-3462657 Msa0001750:intron 35.0%
ACCTAAAACCCTTTAATTGG+TGG + chr1_1:3462642-3462661 None:intergenic 35.0%
GCTACCTAAAACCCTTTAAT+TGG + chr1_1:3462645-3462664 None:intergenic 35.0%
TGTAACGAAACTTCTGCAAA+TGG + chr1_1:3462801-3462820 None:intergenic 35.0%
GGTATTGTATAATCTGGCAA+CGG + chr1_1:3462825-3462844 None:intergenic 35.0%
TCGGATGGTATTGTATAATC+TGG + chr1_1:3462831-3462850 None:intergenic 35.0%
GATTATACAATACCATCCGA+TGG - chr1_1:3462831-3462850 Msa0001750:CDS 35.0%
TTATACAATACCATCCGATG+GGG - chr1_1:3462833-3462852 Msa0001750:CDS 35.0%
! CTTATTTATTCAACTGGCTC+AGG - chr1_1:3462930-3462949 Msa0001750:CDS 35.0%
! GTCTAGGAAGTGTAATTTCA+AGG - chr1_1:3462991-3463010 Msa0001750:CDS 35.0%
! TCTTAGCTGTTATTTGCAGA+TGG - chr1_1:3463195-3463214 Msa0001750:CDS 35.0%
! CTTAGCTGTTATTTGCAGAT+GGG - chr1_1:3463196-3463215 Msa0001750:CDS 35.0%
! AAGCTTCAGGTTTATGTTCT+TGG - chr1_1:3463317-3463336 Msa0001750:CDS 35.0%
GTTTATGTTCTTGGACCAAT+TGG - chr1_1:3463326-3463345 Msa0001750:CDS 35.0%
AATCACAAAGATGCACATCA+TGG - chr1_1:3463392-3463411 Msa0001750:intron 35.0%
ATGCAAACAATAGATGGCTT+TGG + chr1_1:3463458-3463477 None:intergenic 35.0%
TTCGATTCAAGGGTAGATAA+GGG + chr1_1:3463485-3463504 None:intergenic 35.0%
TTTCGATTCAAGGGTAGATA+AGG + chr1_1:3463486-3463505 None:intergenic 35.0%
ATGTAGCGATTTCGATTCAA+GGG + chr1_1:3463495-3463514 None:intergenic 35.0%
!!! CTTGTTGCTGTTTTATCAGA+TGG - chr1_1:3463515-3463534 Msa0001750:CDS 35.0%
GTTTAAAGGTTGTCACAACA+CGG - chr1_1:3463615-3463634 Msa0001750:CDS 35.0%
AAGAGTTCCAGCAGAATAAT+AGG + chr1_1:3463741-3463760 None:intergenic 35.0%
! CTGTTTAAAACAAGGAGTGA+AGG + chr1_1:3463794-3463813 None:intergenic 35.0%
!!! CTTCACTCCTTGTTTTAAAC+AGG - chr1_1:3463792-3463811 Msa0001750:CDS 35.0%
! TCGAATCCCTGTTTAAAACA+AGG + chr1_1:3463802-3463821 None:intergenic 35.0%
GTATCTTCTTTACCAGTTGA+AGG - chr1_1:3463890-3463909 Msa0001750:CDS 35.0%
ATCTGGTAGAGGTAAAACAT+CGG + chr1_1:3463933-3463952 None:intergenic 35.0%
TACTCAGAAATTGAGTTTGG+TGG - chr1_1:3463977-3463996 Msa0001750:CDS 35.0%
CTCAATGGAATCATGTGAAA+GGG - chr1_1:3464009-3464028 Msa0001750:CDS 35.0%
! ACAGGCCATTAGACATTTTA+AGG - chr1_1:3464137-3464156 Msa0001750:CDS 35.0%
TAAAACTGATCTCGGAGAAT+TGG + chr1_1:3464176-3464195 None:intergenic 35.0%
!!! TTTTTTCAGGTGCACATGAA+GGG - chr1_1:3464437-3464456 Msa0001750:CDS 35.0%
CAAGATTACTCTTTCCTCTA+TGG - chr1_1:3464476-3464495 Msa0001750:CDS 35.0%
AAAGGAAGTTTAAGTGCTTC+AGG - chr1_1:3464520-3464539 Msa0001750:CDS 35.0%
TCAGGCACTTCATTTGAAAA+TGG - chr1_1:3464538-3464557 Msa0001750:CDS 35.0%
CAGGCACTTCATTTGAAAAT+GGG - chr1_1:3464539-3464558 Msa0001750:CDS 35.0%
AGGCACTTCATTTGAAAATG+GGG - chr1_1:3464540-3464559 Msa0001750:CDS 35.0%
AAGATCGAAGTTTGTGTTCA+AGG + chr1_1:3464603-3464622 None:intergenic 35.0%
GTAAGTGGTTCCATTCTATA+TGG - chr1_1:3464694-3464713 Msa0001750:CDS 35.0%
ACAAGGTTCTTACCATACTT+CGG + chr1_1:3464747-3464766 None:intergenic 35.0%
AGTATGGTAAGAACCTTGTT+CGG - chr1_1:3464748-3464767 Msa0001750:CDS 35.0%
CGGTGCATATTCCAAAAATA+TGG - chr1_1:3464768-3464787 Msa0001750:CDS 35.0%
! GCCATTAGACTCCATATTTT+TGG + chr1_1:3464782-3464801 None:intergenic 35.0%
!! CAACCTTTGCCTTTTATTTG+CGG + chr1_1:3464812-3464831 None:intergenic 35.0%
GTGCAACCATTTAGCAATAT+AGG + chr1_1:3464873-3464892 None:intergenic 35.0%
!! TCAACTAGTTTGTTCTGAAG+AGG - chr1_1:3465099-3465118 Msa0001750:CDS 35.0%
!! CAACTAGTTTGTTCTGAAGA+GGG - chr1_1:3465100-3465119 Msa0001750:CDS 35.0%
! ATATAAGCCTTGTAGCAAGA+CGG + chr1_1:3465129-3465148 None:intergenic 35.0%
AAGGCTTATATCTGCTCTAA+TGG - chr1_1:3465138-3465157 Msa0001750:intron 35.0%
ATGGAGGTAGAACATTGTTT+AGG - chr1_1:3465157-3465176 Msa0001750:intron 35.0%
TTACAAATTCTTCTTAGCCG+TGG - chr1_1:3465387-3465406 Msa0001750:CDS 35.0%
GACTATAGATGATGAGGAAA+AGG - chr1_1:3465432-3465451 Msa0001750:CDS 35.0%
! TACTGTTTGCAAACGTTTTG+AGG - chr1_1:3465516-3465535 Msa0001750:CDS 35.0%
!!! GCAAACGTTTTGAGGATTTA+AGG - chr1_1:3465524-3465543 Msa0001750:CDS 35.0%
! GTTTTCACAGAAATGGAGAA+GGG + chr1_1:3465570-3465589 None:intergenic 35.0%
! AGTTTTCACAGAAATGGAGA+AGG + chr1_1:3465571-3465590 None:intergenic 35.0%
! ATTGATGGCATGCTAATCAT+AGG + chr1_1:3465770-3465789 None:intergenic 35.0%
GTGTTTGACATTCAGATTGA+TGG + chr1_1:3465785-3465804 None:intergenic 35.0%
AGCTTCATAAAACCTGCAAT+AGG + chr1_1:3465813-3465832 None:intergenic 35.0%
!!! GCTTATATACTTTTTCCGAG+AGG + chr1_1:3466053-3466072 None:intergenic 35.0%
TATAAGCCAAATTGTTCAGC+TGG - chr1_1:3466066-3466085 Msa0001750:intron 35.0%
ATAAGCCAAATTGTTCAGCT+GGG - chr1_1:3466067-3466086 Msa0001750:intron 35.0%
TACTCATGGAAAATTCTGTC+GGG + chr1_1:3466103-3466122 None:intergenic 35.0%
TAGCCTGATAAAGATACTCA+TGG + chr1_1:3466117-3466136 None:intergenic 35.0%
TATCAGGCTATGATAGACTT+AGG - chr1_1:3466127-3466146 Msa0001750:intron 35.0%
AGGTCTTGAGAATGAATTGT+TGG - chr1_1:3466147-3466166 Msa0001750:intron 35.0%
GAGAATGAATTGTTGGAGTA+TGG - chr1_1:3466154-3466173 Msa0001750:intron 35.0%
AATGAATTGTTGGAGTATGG+AGG - chr1_1:3466157-3466176 Msa0001750:intron 35.0%
!! CACTTTTTAAGAAGGGCAAT+AGG + chr1_1:3466189-3466208 None:intergenic 35.0%
TAATAAGCGACCTCATGTAT+GGG + chr1_1:3466223-3466242 None:intergenic 35.0%
ATAATAAGCGACCTCATGTA+TGG + chr1_1:3466224-3466243 None:intergenic 35.0%
TTAATGGCCTAATGTTCACT+TGG - chr1_1:3466265-3466284 Msa0001750:intron 35.0%
! CTTTTGACCAAGTGAACATT+AGG + chr1_1:3466275-3466294 None:intergenic 35.0%
!!! TTTTGTTTTCCCTATCTGCT+AGG - chr1_1:3466414-3466433 Msa0001750:intron 35.0%
! AGTACTTTGAACTTTTGGCA+AGG - chr1_1:3466506-3466525 Msa0001750:intron 35.0%
AAACTGTTAAGATCCCACAT+TGG - chr1_1:3466843-3466862 Msa0001750:intron 35.0%
!! AACCATTACAAGGAGTACTT+TGG + chr1_1:3466880-3466899 None:intergenic 35.0%
AAGTACTCCTTGTAATGGTT+AGG - chr1_1:3466880-3466899 Msa0001750:intron 35.0%
TCCACTAAAGCTAATTCAAC+GGG + chr1_1:3466916-3466935 None:intergenic 35.0%
ATGTCAATCAGAGTTGAAGT+TGG - chr1_1:3467020-3467039 Msa0001750:intron 35.0%
CAGATTACAGAATCATGTAG+AGG + chr1_1:3467321-3467340 None:intergenic 35.0%
TCAGATCACCTGAATAGTTT+CGG - chr1_1:3467348-3467367 Msa0001750:intron 35.0%
AAGAATGCAACAAATAGCGA+TGG - chr1_1:3467453-3467472 Msa0001750:intron 35.0%
AGAATGCAACAAATAGCGAT+GGG - chr1_1:3467454-3467473 Msa0001750:intron 35.0%
GGATTACTAGATATGCTTGA+AGG - chr1_1:3467510-3467529 Msa0001750:intron 35.0%
CAAATCTGATGATAGCTCTT+TGG + chr1_1:3467703-3467722 None:intergenic 35.0%
AATCGTGGAAGTAAATAGCT+CGG + chr1_1:3467933-3467952 None:intergenic 35.0%
AGACATGTATTGTTTGGTTG+AGG - chr1_1:3467957-3467976 Msa0001750:intron 35.0%
GACATGTATTGTTTGGTTGA+GGG - chr1_1:3467958-3467977 Msa0001750:intron 35.0%
! TTGGTTTGACAAGACAGAAA+AGG + chr1_1:3468127-3468146 None:intergenic 35.0%
! TCAAACCAAATGAAGCATCA+CGG - chr1_1:3468138-3468157 Msa0001750:intron 35.0%
GAATAATACACAACCAAGAC+CGG + chr1_1:3468203-3468222 None:intergenic 35.0%
! AATTTTCTTTCAGACATGCC+TGG - chr1_1:3468294-3468313 Msa0001750:intron 35.0%
CTGTACTTTGCTAACTATTC+TGG - chr1_1:3468322-3468341 Msa0001750:intron 35.0%
! ATAGATCAAGCTATTTCAGG+AGG - chr1_1:3468388-3468407 Msa0001750:intron 35.0%
! AGATACTCTAGAGAGTACAA+GGG + chr1_1:3468596-3468615 None:intergenic 35.0%
! AAGATACTCTAGAGAGTACA+AGG + chr1_1:3468597-3468616 None:intergenic 35.0%
!! CTCTAGAGTATCTTTCAGTT+TGG - chr1_1:3468603-3468622 Msa0001750:CDS 35.0%
TGATCATATGCGTTCAATAC+AGG + chr1_1:3468777-3468796 None:intergenic 35.0%
CATCCCCAAATCTTAGATTA+CGG - chr1_1:3468823-3468842 Msa0001750:intron 35.0%
! CATCCGTAATCTAAGATTTG+GGG + chr1_1:3468829-3468848 None:intergenic 35.0%
! GCATCCGTAATCTAAGATTT+GGG + chr1_1:3468830-3468849 None:intergenic 35.0%
! AGCATCCGTAATCTAAGATT+TGG + chr1_1:3468831-3468850 None:intergenic 35.0%
GTCTATATATTCACACAGGA+TGG - chr1_1:3468887-3468906 Msa0001750:intron 35.0%
GGTTCTTCCATAATAATAGG+CGG - chr1_1:3468921-3468940 Msa0001750:intron 35.0%
! TGATTTTGTCCCTAATTCCT+TGG + chr1_1:3468977-3468996 None:intergenic 35.0%
AAATCACAAGTGTAGCAAAC+AGG - chr1_1:3468991-3469010 Msa0001750:intron 35.0%
AAATCACAAGTGTAGCAAAC+AGG - chr1_1:3468991-3469010 Msa0001750:intron 35.0%
ACAGGTATATGACTGAAGTA+CGG - chr1_1:3469333-3469352 Msa0001750:CDS 35.0%
TTCGTAAATTTCAGAGTGGC+GGG + chr1_1:3458781-3458800 None:intergenic 40.0%
GGGTTTCGTAAATTTCAGAG+TGG + chr1_1:3458785-3458804 None:intergenic 40.0%
AGAGAATTAACGGCGATGTA+GGG + chr1_1:3458817-3458836 None:intergenic 40.0%
! AAGCTTCTAGAGATTCTTCG+AGG + chr1_1:3459067-3459086 None:intergenic 40.0%
!! TCTCTAGGGTGAGTAGAATA+AGG + chr1_1:3459107-3459126 None:intergenic 40.0%
TTATTCTACTCACCCTAGAG+AGG - chr1_1:3459106-3459125 Msa0001750:intron 40.0%
!! GAATGAAAGGTACCTCTCTA+GGG + chr1_1:3459121-3459140 None:intergenic 40.0%
!! AGAATGAAAGGTACCTCTCT+AGG + chr1_1:3459122-3459141 None:intergenic 40.0%
CTGGGTACATTACAGGTTAT+AGG - chr1_1:3459277-3459296 Msa0001750:intron 40.0%
GGTGTGTGTTGAGCATAATT+AGG - chr1_1:3459338-3459357 Msa0001750:CDS 40.0%
!! GCTGTTTTCATAAGCTATCG+TGG - chr1_1:3459468-3459487 Msa0001750:CDS 40.0%
CACTAAGGAGCTGTTTGAAT+TGG + chr1_1:3459597-3459616 None:intergenic 40.0%
!!! GCCTTTTGTTGTTGTTTCAG+TGG - chr1_1:3459656-3459675 Msa0001750:intron 40.0%
GCCACTGAAACAACAACAAA+AGG + chr1_1:3459660-3459679 None:intergenic 40.0%
TATTCGCTACCTCAACCAAA+GGG + chr1_1:3459684-3459703 None:intergenic 40.0%
ATTGAAAGATACAATGCGGC+TGG - chr1_1:3459727-3459746 Msa0001750:intron 40.0%
CTTAAACTGTTACAGAGGAC+CGG + chr1_1:3460117-3460136 None:intergenic 40.0%
GAACAAGCTATTTGTGCTGT+TGG - chr1_1:3460509-3460528 Msa0001750:intron 40.0%
GGTCTTGCAAAATCAAAGCA+CGG - chr1_1:3460530-3460549 Msa0001750:intron 40.0%
ACATTCCCATCTCTTTCCAT+GGG + chr1_1:3460864-3460883 None:intergenic 40.0%
CTTGACATTCCTGGGAAAAT+TGG + chr1_1:3460939-3460958 None:intergenic 40.0%
GGCAAATAACTTGACATTCC+TGG + chr1_1:3460948-3460967 None:intergenic 40.0%
! AATTCCGGGTATGTTTTTCC+TGG - chr1_1:3461015-3461034 Msa0001750:intron 40.0%
! ATTCCGGGTATGTTTTTCCT+GGG - chr1_1:3461016-3461035 Msa0001750:intron 40.0%
ATTCCCAGGAAAAACATACC+CGG + chr1_1:3461022-3461041 None:intergenic 40.0%
GGGAAACACAAATTATTCCC+AGG + chr1_1:3461036-3461055 None:intergenic 40.0%
TTGATCGCTGTTCCTTTCAT+TGG - chr1_1:3461433-3461452 Msa0001750:intron 40.0%
TACAATGGATAAGTGGACAG+TGG - chr1_1:3461582-3461601 Msa0001750:intron 40.0%
ATGTAGAAGTTCGTCTTAGG+TGG - chr1_1:3461685-3461704 Msa0001750:intron 40.0%
GAGTTCAGACAATAACAACC+AGG + chr1_1:3461929-3461948 None:intergenic 40.0%
! CTTTTGCTCAATTCCAACCA+AGG + chr1_1:3462009-3462028 None:intergenic 40.0%
!! GTGGACTGGTACAAAAATGA+GGG + chr1_1:3462114-3462133 None:intergenic 40.0%
!! CTCATTTTTGTACCAGTCCA+CGG - chr1_1:3462113-3462132 Msa0001750:CDS 40.0%
GAGTACAGGAGACTGATATT+TGG - chr1_1:3462160-3462179 Msa0001750:CDS 40.0%
!! CTCCCTTTCTAAAGTGTACT+TGG + chr1_1:3462223-3462242 None:intergenic 40.0%
! CAAGTACACTTTAGAAAGGG+AGG - chr1_1:3462221-3462240 Msa0001750:CDS 40.0%
TCTTTGGGCTTATTCAAGCT+TGG - chr1_1:3462276-3462295 Msa0001750:CDS 40.0%
! TTTCAGGTGATTCTCTCTTG+AGG + chr1_1:3462473-3462492 None:intergenic 40.0%
! GCTGCTGGATTTTCTATTTC+AGG + chr1_1:3462489-3462508 None:intergenic 40.0%
GAAGAATACCAATATGCTGC+TGG + chr1_1:3462504-3462523 None:intergenic 40.0%
CTGAAAAGAACATACTGCAC+TGG + chr1_1:3462682-3462701 None:intergenic 40.0%
! TTTATTCAACTGGCTCAGGA+TGG - chr1_1:3462934-3462953 Msa0001750:CDS 40.0%
TGTTGACCCTGTTGTTGAAA+TGG - chr1_1:3463247-3463266 Msa0001750:CDS 40.0%
AGAGACAGATACTGTATGCA+CGG - chr1_1:3463282-3463301 Msa0001750:CDS 40.0%
! TTCTTGGACCAATTGGTGAT+GGG - chr1_1:3463333-3463352 Msa0001750:CDS 40.0%
TTTAATGGCCCATCACCAAT+TGG + chr1_1:3463344-3463363 None:intergenic 40.0%
GGTGAGATGCAAACAATAGA+TGG + chr1_1:3463464-3463483 None:intergenic 40.0%
GATGTAGCGATTTCGATTCA+AGG + chr1_1:3463496-3463515 None:intergenic 40.0%
! CTGTTTTATCAGATGGCAGA+AGG - chr1_1:3463522-3463541 Msa0001750:CDS 40.0%
TTAAACAGCTAGGCTTGTGA+TGG + chr1_1:3463601-3463620 None:intergenic 40.0%
TCACAAGCCTAGCTGTTTAA+AGG - chr1_1:3463601-3463620 Msa0001750:CDS 40.0%
GTGACAACCTTTAAACAGCT+AGG + chr1_1:3463611-3463630 None:intergenic 40.0%
TGCTGGAACTCTTATCCTTT+CGG - chr1_1:3463748-3463767 Msa0001750:CDS 40.0%
! TGAACAGTAGCTGAAGTATC+TGG + chr1_1:3463950-3463969 None:intergenic 40.0%
GCTCAATGGAATCATGTGAA+AGG - chr1_1:3464008-3464027 Msa0001750:CDS 40.0%
ATTGTCATCTTCAGCACCAT+GGG - chr1_1:3464094-3464113 Msa0001750:CDS 40.0%
AACAATTTCCATCATGCCCA+TGG + chr1_1:3464113-3464132 None:intergenic 40.0%
!! GGCCATTAGACATTTTAAGG+CGG - chr1_1:3464140-3464159 Msa0001750:CDS 40.0%
AGCCGCCTTAAAATGTCTAA+TGG + chr1_1:3464145-3464164 None:intergenic 40.0%
!!! TTCTACAATCGTTTTGGAGC+CGG - chr1_1:3464202-3464221 Msa0001750:CDS 40.0%
! TGTGTTTAATGCTAGCTTCG+AGG - chr1_1:3464239-3464258 Msa0001750:CDS 40.0%
CAGCAATGTTATTGCAGAGA+AGG - chr1_1:3464285-3464304 Msa0001750:CDS 40.0%
TTTGAGGATCCAAGACTTGT+TGG - chr1_1:3464319-3464338 Msa0001750:CDS 40.0%
TCATGTGCACCTGAAAAAAC+AGG + chr1_1:3464436-3464455 None:intergenic 40.0%
!!! GTTTTTTCAGGTGCACATGA+AGG - chr1_1:3464436-3464455 Msa0001750:CDS 40.0%
ATTACAGGTAGTTCCCATAG+AGG + chr1_1:3464493-3464512 None:intergenic 40.0%
TCTATGGGAACTACCTGTAA+TGG - chr1_1:3464492-3464511 Msa0001750:CDS 40.0%
GTTGTATGCAGACTATCCAT+CGG - chr1_1:3464565-3464584 Msa0001750:CDS 40.0%
TTGTATGCAGACTATCCATC+GGG - chr1_1:3464566-3464585 Msa0001750:CDS 40.0%
TAAGATCTAGAAGGAACCAG+AGG - chr1_1:3464635-3464654 Msa0001750:CDS 40.0%
TATGGTTGTGTAGCAGGATT+AGG - chr1_1:3464667-3464686 Msa0001750:CDS 40.0%
AGTGGTTCCATTCTATATGG+TGG - chr1_1:3464697-3464716 Msa0001750:CDS 40.0%
AGAACCACCACCATATAGAA+TGG + chr1_1:3464707-3464726 None:intergenic 40.0%
! TTTGGAATATGCACCGAACA+AGG + chr1_1:3464764-3464783 None:intergenic 40.0%
!! ACTTCTGTTTGTTGTGTCAC+AGG - chr1_1:3464928-3464947 Msa0001750:CDS 40.0%
GCTTATATCTGCTCTAATGG+AGG - chr1_1:3465141-3465160 Msa0001750:intron 40.0%
ACATTGCTCCAGTATTACAC+TGG - chr1_1:3465286-3465305 Msa0001750:intron 40.0%
CATCTGTACCAGTGTAATAC+TGG + chr1_1:3465297-3465316 None:intergenic 40.0%
CAGTATTACACTGGTACAGA+TGG - chr1_1:3465295-3465314 Msa0001750:intron 40.0%
ATTACACTGGTACAGATGGT+AGG - chr1_1:3465299-3465318 Msa0001750:intron 40.0%
TTACACTGGTACAGATGGTA+GGG - chr1_1:3465300-3465319 Msa0001750:intron 40.0%
TCAGACTCCTTATAGTAGCT+CGG + chr1_1:3465367-3465386 None:intergenic 40.0%
TGCTGTGACTATAGATGATG+AGG - chr1_1:3465426-3465445 Msa0001750:CDS 40.0%
!! AGACTCTGGAACTTTGCTTA+AGG + chr1_1:3465485-3465504 None:intergenic 40.0%
GTAATTGGCCCATTAGTCAT+TGG + chr1_1:3465671-3465690 None:intergenic 40.0%
! AGTTTGCTTACCTCTTCAGA+AGG - chr1_1:3465835-3465854 Msa0001750:intron 40.0%
CATTATAAGCATCACCTGCA+GGG + chr1_1:3465874-3465893 None:intergenic 40.0%
TCATTATAAGCATCACCTGC+AGG + chr1_1:3465875-3465894 None:intergenic 40.0%
GATTGTGAAGCAGATCCAAT+GGG + chr1_1:3466016-3466035 None:intergenic 40.0%
AGATTGTGAAGCAGATCCAA+TGG + chr1_1:3466017-3466036 None:intergenic 40.0%
!!! ATATACTTTTTCCGAGAGGC+TGG + chr1_1:3466049-3466068 None:intergenic 40.0%
TTAAGAAGGGCAATAGGTCA+GGG + chr1_1:3466183-3466202 None:intergenic 40.0%
TTTAAGAAGGGCAATAGGTC+AGG + chr1_1:3466184-3466203 None:intergenic 40.0%
! TTGCCCTTCTTAAAAAGTGC+TGG - chr1_1:3466190-3466209 Msa0001750:intron 40.0%
!! CGACCAGCACTTTTTAAGAA+GGG + chr1_1:3466196-3466215 None:intergenic 40.0%
!! ACGACCAGCACTTTTTAAGA+AGG + chr1_1:3466197-3466216 None:intergenic 40.0%
! TTGACTTGATTGGACGACAT+AGG + chr1_1:3466487-3466506 None:intergenic 40.0%
! CAAGGTATTACGTGTTGAAG+CGG - chr1_1:3466524-3466543 Msa0001750:intron 40.0%
! TGTATCTCTTTGGAAGCTTC+TGG - chr1_1:3466662-3466681 Msa0001750:intron 40.0%
GCATGATGTCGTTCGTTATT+TGG + chr1_1:3466820-3466839 None:intergenic 40.0%
GGATTGTCCTAACCATTACA+AGG + chr1_1:3466890-3466909 None:intergenic 40.0%
TAAAGCTAATTCAACGGGGT+AGG + chr1_1:3466911-3466930 None:intergenic 40.0%
CCACTAAAGCTAATTCAACG+GGG + chr1_1:3466915-3466934 None:intergenic 40.0%
TACATAAGGATTCGCGATTC+GGG + chr1_1:3467159-3467178 None:intergenic 40.0%
GTACATAAGGATTCGCGATT+CGG + chr1_1:3467160-3467179 None:intergenic 40.0%
TAGAGGTCTGATGTGGAAAA+GGG + chr1_1:3467304-3467323 None:intergenic 40.0%
AATCATGTAGAGGTCTGATG+TGG + chr1_1:3467311-3467330 None:intergenic 40.0%
CCTGTAAAACTGCATTGCTT+AGG + chr1_1:3467431-3467450 None:intergenic 40.0%
! CCTAAGCAATGCAGTTTTAC+AGG - chr1_1:3467428-3467447 Msa0001750:intron 40.0%
!! ATGGGTTGGTTAGTTCTACT+CGG - chr1_1:3467472-3467491 Msa0001750:intron 40.0%
CAAAGAGGAACTAGAGCATA+TGG - chr1_1:3467566-3467585 Msa0001750:intron 40.0%
GCAAAATTGGCATCAACAGT+TGG + chr1_1:3467660-3467679 None:intergenic 40.0%
GCGTGTTGCATTTGCAAAAT+TGG + chr1_1:3467673-3467692 None:intergenic 40.0%
ATGCTGTTCCCTTTAAACTC+TGG - chr1_1:3467751-3467770 Msa0001750:CDS 40.0%
TGCTGTTCCCTTTAAACTCT+GGG - chr1_1:3467752-3467771 Msa0001750:CDS 40.0%
AGTACCTCCCAGAGTTTAAA+GGG + chr1_1:3467762-3467781 None:intergenic 40.0%
AAGTACCTCCCAGAGTTTAA+AGG + chr1_1:3467763-3467782 None:intergenic 40.0%
! GAGGTACTTCTTTCTCTTTC+TGG - chr1_1:3467774-3467793 Msa0001750:CDS 40.0%
GCTAAAGCTCAAAAGACTGA+AGG + chr1_1:3467897-3467916 None:intergenic 40.0%
GTATTGTTTGGTTGAGGGAA+AGG - chr1_1:3467963-3467982 Msa0001750:intron 40.0%
TTTGGTTGAGGGAAAGGATA+GGG - chr1_1:3467969-3467988 Msa0001750:intron 40.0%
TAGCATTGTCAGAGAGACAT+GGG - chr1_1:3468357-3468376 Msa0001750:intron 40.0%
TGAAAAACAGTTCCATCACC+AGG + chr1_1:3468466-3468485 None:intergenic 40.0%
ACCCTTACAAGCAGAAACAA+GGG + chr1_1:3468745-3468764 None:intergenic 40.0%
! CGTAATCTAAGATTTGGGGA+TGG + chr1_1:3468825-3468844 None:intergenic 40.0%
TCTTCCATAATAATAGGCGG+TGG - chr1_1:3468924-3468943 Msa0001750:intron 40.0%
GAATCCACCGCCTATTATTA+TGG + chr1_1:3468931-3468950 None:intergenic 40.0%
AGTTGCTAGCCAAGGAATTA+GGG - chr1_1:3468965-3468984 Msa0001750:intron 40.0%
ATAATGGTGTATTGGGATCG+AGG + chr1_1:3469220-3469239 None:intergenic 40.0%
GACAATGATTCACACACTTG+AGG + chr1_1:3469266-3469285 None:intergenic 40.0%
!! CTTCAAGTTCTTTAAAGCCG+CGG + chr1_1:3469397-3469416 None:intergenic 40.0%
! ACGTCCATGGAGACTAATTT+TGG + chr1_1:3469585-3469604 None:intergenic 40.0%
! TAACGGCGATGTAGGGTTTT+GGG + chr1_1:3458810-3458829 None:intergenic 45.0%
! TTAACGGCGATGTAGGGTTT+TGG + chr1_1:3458811-3458830 None:intergenic 45.0%
GAGAGAATTAACGGCGATGT+AGG + chr1_1:3458818-3458837 None:intergenic 45.0%
TCTCTCTCTCTCTCTCTCAT+CGG - chr1_1:3458939-3458958 Msa0001750:CDS 45.0%
CTCGTTGTCAGTGATCGAAT+TGG - chr1_1:3459017-3459036 Msa0001750:intron 45.0%
CGAGCTGAGAAGAAACTTCA+CGG + chr1_1:3459043-3459062 None:intergenic 45.0%
ACTGAAGCACAAGCTCACTA+AGG + chr1_1:3459612-3459631 None:intergenic 45.0%
ATTCGCTACCTCAACCAAAG+GGG + chr1_1:3459683-3459702 None:intergenic 45.0%
GTATTCGCTACCTCAACCAA+AGG + chr1_1:3459685-3459704 None:intergenic 45.0%
TGGTTGAGGTAGCGAATACA+TGG - chr1_1:3459686-3459705 Msa0001750:intron 45.0%
GGTTGAGGTAGCGAATACAT+GGG - chr1_1:3459687-3459706 Msa0001750:intron 45.0%
AAAGATACAATGCGGCTGGT+GGG - chr1_1:3459731-3459750 Msa0001750:intron 45.0%
TTCCTGAAATACGTAGGGCA+TGG - chr1_1:3459779-3459798 Msa0001750:intron 45.0%
TCCTGAAATACGTAGGGCAT+GGG - chr1_1:3459780-3459799 Msa0001750:intron 45.0%
!! TCCTCTGGCGTTTTGATAAG+TGG - chr1_1:3459824-3459843 Msa0001750:CDS 45.0%
ACCACTTATCAAAACGCCAG+AGG + chr1_1:3459828-3459847 None:intergenic 45.0%
!! CTTACTTGGGTGTTTCTAGC+CGG - chr1_1:3460095-3460114 Msa0001750:intron 45.0%
!! CATTGCTGTTTCCTTAGGGA+TGG - chr1_1:3460461-3460480 Msa0001750:intron 45.0%
GGTCAGTGTCCTGAATATAG+TGG - chr1_1:3460482-3460501 Msa0001750:intron 45.0%
TGTTCCTCGCCACTATATTC+AGG + chr1_1:3460494-3460513 None:intergenic 45.0%
AATCTTAGCAACCCCTGTTG+AGG - chr1_1:3460583-3460602 Msa0001750:CDS 45.0%
AGATGGCCAATACCTCAACA+GGG + chr1_1:3460598-3460617 None:intergenic 45.0%
TAGATGGCCAATACCTCAAC+AGG + chr1_1:3460599-3460618 None:intergenic 45.0%
TTCCTGGGTATAAAGGTTCC+TGG - chr1_1:3460806-3460825 Msa0001750:CDS 45.0%
TCCTGGGTATAAAGGTTCCT+GGG - chr1_1:3460807-3460826 Msa0001750:CDS 45.0%
TGGGAAGTTACTTCATTCCC+AGG + chr1_1:3460827-3460846 None:intergenic 45.0%
CACATTCCCATCTCTTTCCA+TGG + chr1_1:3460865-3460884 None:intergenic 45.0%
!!! TTTAGGGGGCGTTTGTTTTG+GGG + chr1_1:3461056-3461075 None:intergenic 45.0%
!!! CTTTAGGGGGCGTTTGTTTT+GGG + chr1_1:3461057-3461076 None:intergenic 45.0%
!!! ACTTTAGGGGGCGTTTGTTT+TGG + chr1_1:3461058-3461077 None:intergenic 45.0%
!! AAAACCGGCTTGTGAGGTAA+GGG + chr1_1:3461129-3461148 None:intergenic 45.0%
TTGGGCATGAGACATGCATT+GGG - chr1_1:3461251-3461270 Msa0001750:intron 45.0%
CTGACTCCCTCTAGTGATAA+AGG - chr1_1:3461902-3461921 Msa0001750:intron 45.0%
CCAGGTCCTTTATCACTAGA+GGG + chr1_1:3461911-3461930 None:intergenic 45.0%
ACCAGGTCCTTTATCACTAG+AGG + chr1_1:3461912-3461931 None:intergenic 45.0%
!! CGTGGACTGGTACAAAAATG+AGG + chr1_1:3462115-3462134 None:intergenic 45.0%
AAGGGTTAGACTTCGAGTAC+AGG - chr1_1:3462146-3462165 Msa0001750:CDS 45.0%
TTGGGCTTATTCAAGCTTGG+CGG - chr1_1:3462279-3462298 Msa0001750:CDS 45.0%
! TCTTTTCAGACCTCCATGCA+AGG - chr1_1:3462693-3462712 Msa0001750:intron 45.0%
! CTTTTCAGACCTCCATGCAA+GGG - chr1_1:3462694-3462713 Msa0001750:intron 45.0%
ACTTGTCATCGTAACCCCAT+CGG + chr1_1:3462850-3462869 None:intergenic 45.0%
! AAGTGTGGCATGTACCGATA+AGG - chr1_1:3462866-3462885 Msa0001750:CDS 45.0%
! AGTGTGGCATGTACCGATAA+GGG - chr1_1:3462867-3462886 Msa0001750:CDS 45.0%
AAGGAAAATGCGGCCCTTAT+CGG + chr1_1:3462883-3462902 None:intergenic 45.0%
! ATTTTCCTTGCTGGTCGTGA+TGG - chr1_1:3462894-3462913 Msa0001750:CDS 45.0%
! AGAAAAGTATGCGTCACTGC+TGG - chr1_1:3462969-3462988 Msa0001750:CDS 45.0%
!! TGCAGTCACCTCATTTTTGC+AGG - chr1_1:3463139-3463158 Msa0001750:intron 45.0%
GACTGAAGAGATGAAGCTTC+AGG - chr1_1:3463304-3463323 Msa0001750:CDS 45.0%
GTTCTTGGACCAATTGGTGA+TGG - chr1_1:3463332-3463351 Msa0001750:CDS 45.0%
CACAAAGATGCACATCATGG+AGG - chr1_1:3463395-3463414 Msa0001750:intron 45.0%
CATGGAGGTAGACAATCAAG+TGG - chr1_1:3463410-3463429 Msa0001750:intron 45.0%
GGATCTCTCATTGAAAGTCG+AGG - chr1_1:3463712-3463731 Msa0001750:CDS 45.0%
! ACAAGGAGTGAAGGCATAGT+TGG + chr1_1:3463785-3463804 None:intergenic 45.0%
TCCTCACCATCAGGTAATCT+AGG - chr1_1:3463830-3463849 Msa0001750:CDS 45.0%
! TCCTAGATTACCTGATGGTG+AGG + chr1_1:3463834-3463853 None:intergenic 45.0%
CCTGTTCCTAGATTACCTGA+TGG + chr1_1:3463839-3463858 None:intergenic 45.0%
CCATCAGGTAATCTAGGAAC+AGG - chr1_1:3463836-3463855 Msa0001750:CDS 45.0%
GTAATCTAGGAACAGGTACG+AGG - chr1_1:3463843-3463862 Msa0001750:CDS 45.0%
ATACAGTTTCCCGTAATGCC+CGG + chr1_1:3463874-3463893 None:intergenic 45.0%
!! GAAAGCATTCGTCCTTCAAC+TGG + chr1_1:3463905-3463924 None:intergenic 45.0%
! GTAGCTGAAGTATCTGGTAG+AGG + chr1_1:3463944-3463963 None:intergenic 45.0%
TGGTGGTTATGAGAGCTCAA+TGG - chr1_1:3463994-3464013 Msa0001750:CDS 45.0%
!! GCAGTATATGTTGGGTTGAG+AGG + chr1_1:3464063-3464082 None:intergenic 45.0%
CAACCCAACATATACTGCCA+AGG - chr1_1:3464065-3464084 Msa0001750:CDS 45.0%
CCTCCTTGGCAGTATATGTT+GGG + chr1_1:3464071-3464090 None:intergenic 45.0%
TCCTCCTTGGCAGTATATGT+TGG + chr1_1:3464072-3464091 None:intergenic 45.0%
AACATATACTGCCAAGGAGG+AGG - chr1_1:3464071-3464090 Msa0001750:CDS 45.0%
AAGATGACAATCCTCCTCCT+TGG + chr1_1:3464085-3464104 None:intergenic 45.0%
GATTGTCATCTTCAGCACCA+TGG - chr1_1:3464093-3464112 Msa0001750:CDS 45.0%
!! GCATTACTGCCTTCAAGTTG+TGG + chr1_1:3464349-3464368 None:intergenic 45.0%
TGTATGCAGACTATCCATCG+GGG - chr1_1:3464567-3464586 Msa0001750:CDS 45.0%
GCAGGATTAGGAGATGTAAG+TGG - chr1_1:3464679-3464698 Msa0001750:CDS 45.0%
GGTTCCATTCTATATGGTGG+TGG - chr1_1:3464700-3464719 Msa0001750:CDS 45.0%
!! ATATGGTGGTGGTTCTGCAT+TGG - chr1_1:3464711-3464730 Msa0001750:CDS 45.0%
!! TATGGTGGTGGTTCTGCATT+GGG - chr1_1:3464712-3464731 Msa0001750:CDS 45.0%
AATATGGAGTCTAATGGCGG+TGG - chr1_1:3464784-3464803 Msa0001750:CDS 45.0%
GAGCCGCAAATAAAAGGCAA+AGG - chr1_1:3464806-3464825 Msa0001750:CDS 45.0%
GCTAATTCTGCAGGACTGTA+CGG + chr1_1:3464835-3464854 None:intergenic 45.0%
GGTGGGCCTATATTGCTAAA+TGG - chr1_1:3464864-3464883 Msa0001750:CDS 45.0%
!! TGTTTGTTGTGTCACAGGTG+AGG - chr1_1:3464933-3464952 Msa0001750:CDS 45.0%
!! GTTTGTTGTGTCACAGGTGA+GGG - chr1_1:3464934-3464953 Msa0001750:CDS 45.0%
AGAGAGCTTCACCAGATCTA+AGG + chr1_1:3464985-3465004 None:intergenic 45.0%
CATGTCACTCGTCTGATTCA+AGG - chr1_1:3465031-3465050 Msa0001750:CDS 45.0%
!! ACTGAACTAGGGCTTGTTGA+AGG + chr1_1:3465069-3465088 None:intergenic 45.0%
TACACTGGTACAGATGGTAG+GGG - chr1_1:3465301-3465320 Msa0001750:intron 45.0%
CAGACTCCTTATAGTAGCTC+GGG + chr1_1:3465366-3465385 None:intergenic 45.0%
AGTCATTGGTCAGGACCATA+AGG + chr1_1:3465657-3465676 None:intergenic 45.0%
TGGTCCTGACCAATGACTAA+TGG - chr1_1:3465659-3465678 Msa0001750:intron 45.0%
GGTCCTGACCAATGACTAAT+GGG - chr1_1:3465660-3465679 Msa0001750:intron 45.0%
CAAACACACTCTCCTATTGC+AGG - chr1_1:3465798-3465817 Msa0001750:intron 45.0%
AAGTGCTTGTTCTCTGACTG+TGG + chr1_1:3465909-3465928 None:intergenic 45.0%
AGTGCTTTGCGGTCTCTTAA+AGG - chr1_1:3465962-3465981 Msa0001750:intron 45.0%
!! AAGGAATTTGGCTCTCCCAT+TGG - chr1_1:3465998-3466017 Msa0001750:intron 45.0%
GGAAAATTCTGTCGGGTGAT+TGG + chr1_1:3466096-3466115 None:intergenic 45.0%
ACTGCAACAACTTCTCCGAT+GGG - chr1_1:3466448-3466467 Msa0001750:intron 45.0%
TGCTCATGCATTGCTAAGAC+TGG - chr1_1:3466561-3466580 Msa0001750:intron 45.0%
ATTGACCTCTGCTCAAGAGT+AGG + chr1_1:3466613-3466632 None:intergenic 45.0%
CTGTTAAGATCCCACATTGG+CGG - chr1_1:3466846-3466865 Msa0001750:intron 45.0%
TGTTAAGATCCCACATTGGC+GGG - chr1_1:3466847-3466866 Msa0001750:intron 45.0%
! GGCCAAAGTACTCCTTGTAA+TGG - chr1_1:3466875-3466894 Msa0001750:intron 45.0%
!! CCCCGTTGAATTAGCTTTAG+TGG - chr1_1:3466912-3466931 Msa0001750:intron 45.0%
ACATAAGGATTCGCGATTCG+GGG + chr1_1:3467158-3467177 None:intergenic 45.0%
AGAGGTCTGATGTGGAAAAG+GGG + chr1_1:3467303-3467322 None:intergenic 45.0%
GTAGAGGTCTGATGTGGAAA+AGG + chr1_1:3467305-3467324 None:intergenic 45.0%
CAAGCAAGCCGAAACTATTC+AGG + chr1_1:3467359-3467378 None:intergenic 45.0%
! ATAGTTTCGGCTTGCTTGCA+TGG - chr1_1:3467361-3467380 Msa0001750:intron 45.0%
TGCAACAAATAGCGATGGGT+TGG - chr1_1:3467458-3467477 Msa0001750:intron 45.0%
ATCTAGTAATCCAGTGTCGC+TGG + chr1_1:3467502-3467521 None:intergenic 45.0%
!! AAGGGAAGCTTGCTGTTCTT+CGG - chr1_1:3467529-3467548 Msa0001750:intron 45.0%
GCTGTGTAAAACCTCAGAAC+TGG + chr1_1:3467595-3467614 None:intergenic 45.0%
ATTGGCATCAACAGTTGGAC+TGG + chr1_1:3467655-3467674 None:intergenic 45.0%
TGTTCCCTTTAAACTCTGGG+AGG - chr1_1:3467755-3467774 Msa0001750:CDS 45.0%
!! TCTCTTTCTGGCTGTATGTG+TGG - chr1_1:3467786-3467805 Msa0001750:CDS 45.0%
!! CTCTTTCTGGCTGTATGTGT+GGG - chr1_1:3467787-3467806 Msa0001750:CDS 45.0%
GTTTGGTTGAGGGAAAGGAT+AGG - chr1_1:3467968-3467987 Msa0001750:intron 45.0%
TAGCAAAGTACAGCATCTCC+AGG + chr1_1:3468315-3468334 None:intergenic 45.0%
GTAGCATTGTCAGAGAGACA+TGG - chr1_1:3468356-3468375 Msa0001750:intron 45.0%
! GATCAAGCTATTTCAGGAGG+TGG - chr1_1:3468391-3468410 Msa0001750:intron 45.0%
TGCTCTGTGCTAAAGAGACT+TGG - chr1_1:3468427-3468446 Msa0001750:intron 45.0%
GCTCTGTGCTAAAGAGACTT+GGG - chr1_1:3468428-3468447 Msa0001750:intron 45.0%
TTCCATCACCAGGATAAAGG+CGG + chr1_1:3468456-3468475 None:intergenic 45.0%
CAGTTCCATCACCAGGATAA+AGG + chr1_1:3468459-3468478 None:intergenic 45.0%
ATACCAGTGCAGCTTTCTCA+AGG + chr1_1:3468510-3468529 None:intergenic 45.0%
GAGTATCTTTCAGTTTGGGC+AGG - chr1_1:3468608-3468627 Msa0001750:CDS 45.0%
TATCTTTCAGTTTGGGCAGG+CGG - chr1_1:3468611-3468630 Msa0001750:CDS 45.0%
CGCAACATCTTCATCTCCAA+CGG + chr1_1:3468718-3468737 None:intergenic 45.0%
!! AGCCCTTGTTTCTGCTTGTA+AGG - chr1_1:3468740-3468759 Msa0001750:intron 45.0%
!! GCCCTTGTTTCTGCTTGTAA+GGG - chr1_1:3468741-3468760 Msa0001750:intron 45.0%
CACCCTTACAAGCAGAAACA+AGG + chr1_1:3468746-3468765 None:intergenic 45.0%
GATGCTGAGATCTGTTCTAG+TGG - chr1_1:3468845-3468864 Msa0001750:intron 45.0%
TTCTAGTGGTACTTCGTGAG+TGG - chr1_1:3468859-3468878 Msa0001750:intron 45.0%
TCTAGTGGTACTTCGTGAGT+GGG - chr1_1:3468860-3468879 Msa0001750:intron 45.0%
! AATAGGCGGTGGATTCTCAT+TGG - chr1_1:3468935-3468954 Msa0001750:intron 45.0%
CAGTTGCTAGCCAAGGAATT+AGG - chr1_1:3468964-3468983 Msa0001750:intron 45.0%
GGTATATGACTGAAGTACGG+AGG - chr1_1:3469336-3469355 Msa0001750:CDS 45.0%
!! TTCTGTTTGGCTCTGTGGAA+GGG + chr1_1:3469366-3469385 None:intergenic 45.0%
TTCCACAGAGCCAAACAGAA+GGG - chr1_1:3469366-3469385 Msa0001750:exon 45.0%
!! ATAAATTTATTCATTTATAA+AGG + chr1_1:3462332-3462351 None:intergenic 5.0%
!! AGAGTGGCGGGCAAAATTTC+CGG + chr1_1:3458769-3458788 None:intergenic 50.0%
! AACGGCGATGTAGGGTTTTG+GGG + chr1_1:3458809-3458828 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+CGG + chr1_1:3458916-3458935 None:intergenic 50.0%
TTCGCTACCTCAACCAAAGG+GGG + chr1_1:3459682-3459701 None:intergenic 50.0%
GAAAGATACAATGCGGCTGG+TGG - chr1_1:3459730-3459749 Msa0001750:intron 50.0%
AAGATACAATGCGGCTGGTG+GGG - chr1_1:3459732-3459751 Msa0001750:intron 50.0%
!!! GGGGAAGGAACTGCTTTTTG+TGG - chr1_1:3459751-3459770 Msa0001750:intron 50.0%
GTGTCCTGAATATAGTGGCG+AGG - chr1_1:3460487-3460506 Msa0001750:intron 50.0%
AGCAACCCCTGTTGAGGTAT+TGG - chr1_1:3460589-3460608 Msa0001750:CDS 50.0%
GATGGCCAATACCTCAACAG+GGG + chr1_1:3460597-3460616 None:intergenic 50.0%
TCCCAGGAACCTTTATACCC+AGG + chr1_1:3460811-3460830 None:intergenic 50.0%
!! AAACCGGCTTGTGAGGTAAG+GGG + chr1_1:3461128-3461147 None:intergenic 50.0%
!! CAAAACCGGCTTGTGAGGTA+AGG + chr1_1:3461130-3461149 None:intergenic 50.0%
!! CCTTACAAAACCGGCTTGTG+AGG + chr1_1:3461135-3461154 None:intergenic 50.0%
!! CCTCACAAGCCGGTTTTGTA+AGG - chr1_1:3461132-3461151 Msa0001750:intron 50.0%
GTTGGGCATGAGACATGCAT+TGG - chr1_1:3461250-3461269 Msa0001750:intron 50.0%
GAAGTTCGTCTTAGGTGGCT+TGG - chr1_1:3461690-3461709 Msa0001750:intron 50.0%
CCCTCTAGTGATAAAGGACC+TGG - chr1_1:3461908-3461927 Msa0001750:intron 50.0%
TTTAACGCAACACCGTGGAC+TGG + chr1_1:3462128-3462147 None:intergenic 50.0%
!! AGTCCACGGTGTTGCGTTAA+AGG - chr1_1:3462127-3462146 Msa0001750:CDS 50.0%
!! GTCCACGGTGTTGCGTTAAA+GGG - chr1_1:3462128-3462147 Msa0001750:CDS 50.0%
AACCCTTTAACGCAACACCG+TGG + chr1_1:3462133-3462152 None:intergenic 50.0%
GCTTGGCGGCAGCATTTAAA+TGG - chr1_1:3462293-3462312 Msa0001750:CDS 50.0%
GTAACGGTACTTCCCTTGCA+TGG + chr1_1:3462709-3462728 None:intergenic 50.0%
! TTAGTTGGAGTGTGCTGCTC+TGG - chr1_1:3462756-3462775 Msa0001750:intron 50.0%
TGGGGTTACGATGACAAGTG+TGG - chr1_1:3462851-3462870 Msa0001750:CDS 50.0%
CACGACCAGCAAGGAAAATG+CGG + chr1_1:3462893-3462912 None:intergenic 50.0%
CTATCCACCTCTCCTTCTAG+CGG - chr1_1:3463551-3463570 Msa0001750:CDS 50.0%
! GGCTGGTGTTGAATCCATTC+AGG + chr1_1:3463580-3463599 None:intergenic 50.0%
AGCAAGAGCCATGGTTCCAA+AGG + chr1_1:3463675-3463694 None:intergenic 50.0%
! TTTGGAACCATGGCTCTTGC+TGG - chr1_1:3463674-3463693 Msa0001750:CDS 50.0%
GAGGCAGCCTATTATTCTGC+TGG - chr1_1:3463731-3463750 Msa0001750:CDS 50.0%
TTGGAGGTGATGCATCCGAA+AGG + chr1_1:3463766-3463785 None:intergenic 50.0%
! AGGAGTGAAGGCATAGTTGG+AGG + chr1_1:3463782-3463801 None:intergenic 50.0%
TACAGTTTCCCGTAATGCCC+GGG + chr1_1:3463873-3463892 None:intergenic 50.0%
!! GAATCATGTGAAAGGGCGTC+TGG - chr1_1:3464016-3464035 Msa0001750:CDS 50.0%
CCCAACATATACTGCCAAGG+AGG - chr1_1:3464068-3464087 Msa0001750:CDS 50.0%
! GAAGGCAGCTGAAGCTTTTG+AGG - chr1_1:3464303-3464322 Msa0001750:CDS 50.0%
TGTGGCATGCCAACAAGTCT+TGG + chr1_1:3464331-3464350 None:intergenic 50.0%
GTTGGCATGCCACAACTTGA+AGG - chr1_1:3464337-3464356 Msa0001750:CDS 50.0%
TCAAGCACAAGAACTGCTGC+TGG - chr1_1:3464373-3464392 Msa0001750:CDS 50.0%
!! TGCTGCTGGTGGATTTAGCA+TGG - chr1_1:3464387-3464406 Msa0001750:CDS 50.0%
!! GCTGCTGGTGGATTTAGCAT+GGG - chr1_1:3464388-3464407 Msa0001750:CDS 50.0%
!!! GAGGCTGAGCCTGTTTTTTC+AGG - chr1_1:3464424-3464443 Msa0001750:CDS 50.0%
TCTAGAAGGAACCAGAGGAG+AGG - chr1_1:3464640-3464659 Msa0001750:CDS 50.0%
AACCAGAGGAGAGGACTCTA+TGG - chr1_1:3464649-3464668 Msa0001750:CDS 50.0%
AACCATAGAGTCCTCTCCTC+TGG + chr1_1:3464654-3464673 None:intergenic 50.0%
GGACTCTATGGTTGTGTAGC+AGG - chr1_1:3464661-3464680 Msa0001750:CDS 50.0%
TCCTGCAGAATTAGCTGCCA+TGG - chr1_1:3464840-3464859 Msa0001750:CDS 50.0%
TCCATGGCAGCTAATTCTGC+AGG + chr1_1:3464844-3464863 None:intergenic 50.0%
TGCAGAATTAGCTGCCATGG+AGG - chr1_1:3464843-3464862 Msa0001750:CDS 50.0%
AGAATTAGCTGCCATGGAGG+TGG - chr1_1:3464846-3464865 Msa0001750:CDS 50.0%
GAATTAGCTGCCATGGAGGT+GGG - chr1_1:3464847-3464866 Msa0001750:CDS 50.0%
TGAGGGCAATGGAGTGCATT+AGG - chr1_1:3464951-3464970 Msa0001750:CDS 50.0%
AGGCAGTTGCTCCTTAGATC+TGG - chr1_1:3464971-3464990 Msa0001750:CDS 50.0%
GTACGTAAGTCTGCAGACTC+TGG + chr1_1:3465499-3465518 None:intergenic 50.0%
TGGCCCATTAGTCATTGGTC+AGG + chr1_1:3465666-3465685 None:intergenic 50.0%
! CTTACCTCTTCAGAAGGCAC+AGG - chr1_1:3465841-3465860 Msa0001750:intron 50.0%
! ATAGCCTGTGCCTTCTGAAG+AGG + chr1_1:3465848-3465867 None:intergenic 50.0%
CTCTTAAAGGTGACCCCTCA+CGG - chr1_1:3465975-3465994 Msa0001750:intron 50.0%
AGCCAAATTCCTTCCGTGAG+GGG + chr1_1:3465991-3466010 None:intergenic 50.0%
GAGCCAAATTCCTTCCGTGA+GGG + chr1_1:3465992-3466011 None:intergenic 50.0%
AGAGCCAAATTCCTTCCGTG+AGG + chr1_1:3465993-3466012 None:intergenic 50.0%
GGACACCCAGCTGAACAATT+TGG + chr1_1:3466075-3466094 None:intergenic 50.0%
TGGTCGTACACCCATACATG+AGG - chr1_1:3466210-3466229 Msa0001750:intron 50.0%
CAGCACGAACCTAGCAGATA+GGG + chr1_1:3466426-3466445 None:intergenic 50.0%
ACAGCACGAACCTAGCAGAT+AGG + chr1_1:3466427-3466446 None:intergenic 50.0%
GACTGCAACAACTTCTCCGA+TGG - chr1_1:3466447-3466466 Msa0001750:intron 50.0%
AACTTCTCCGATGGGCCAAT+CGG - chr1_1:3466456-3466475 Msa0001750:intron 50.0%
CATGCATTGCTAAGACTGGC+CGG - chr1_1:3466565-3466584 Msa0001750:intron 50.0%
GTAGGAACTCCGTCAGTAGA+AGG + chr1_1:3466595-3466614 None:intergenic 50.0%
GAGTTCCTACTCTTGAGCAG+AGG - chr1_1:3466605-3466624 Msa0001750:intron 50.0%
! ATCCCACATTGGCGGGTATT+TGG - chr1_1:3466854-3466873 Msa0001750:intron 50.0%
GCATATGGCTTCCAGTTCTG+AGG - chr1_1:3467581-3467600 Msa0001750:intron 50.0%
GAGGGAAAGGATAGGGTACA+TGG - chr1_1:3467976-3467995 Msa0001750:intron 50.0%
CGAGACCGTGATGCTTCATT+TGG + chr1_1:3468146-3468165 None:intergenic 50.0%
GTATCTGCCACTGTTCTGCT+TGG - chr1_1:3468177-3468196 Msa0001750:intron 50.0%
TCCATCACCAGGATAAAGGC+GGG + chr1_1:3468455-3468474 None:intergenic 50.0%
TCACCTTGAGAAAGCTGCAC+TGG - chr1_1:3468504-3468523 Msa0001750:CDS 50.0%
ATCTTTCAGTTTGGGCAGGC+GGG - chr1_1:3468612-3468631 Msa0001750:CDS 50.0%
GAACGTACAGTTGCTAGCCA+AGG - chr1_1:3468957-3468976 Msa0001750:intron 50.0%
!! CTTCTGTTTGGCTCTGTGGA+AGG + chr1_1:3469367-3469386 None:intergenic 50.0%
CTTCCACAGAGCCAAACAGA+AGG - chr1_1:3469365-3469384 Msa0001750:exon 50.0%
TCCACAGAGCCAAACAGAAG+GGG - chr1_1:3469367-3469386 Msa0001750:exon 50.0%
CAAACAGAAGGGGTTTACCG+CGG - chr1_1:3469377-3469396 Msa0001750:five_prime_UTR 50.0%
CATGGACGTGTCATCTATGC+CGG - chr1_1:3469596-3469615 Msa0001750:five_prime_UTR 50.0%
GGAGAACTAGGCTCGAATGA+CGG + chr1_1:3469622-3469641 None:intergenic 50.0%
!!! GCGATGTAGGGTTTTGGGGT+GGG + chr1_1:3458805-3458824 None:intergenic 55.0%
CTCTCTCTCTCTCTCATCGG+TGG - chr1_1:3458942-3458961 Msa0001750:CDS 55.0%
TCTCTCTCTCTCATCGGTGG+TGG - chr1_1:3458945-3458964 Msa0001750:CDS 55.0%
!! TCATCGGTGGTGGAATGTCG+TGG - chr1_1:3458955-3458974 Msa0001750:CDS 55.0%
!! CATCGGTGGTGGAATGTCGT+GGG - chr1_1:3458956-3458975 Msa0001750:CDS 55.0%
ATTCGTGACGTCACCAACGC+TGG - chr1_1:3458993-3459012 Msa0001750:intron 55.0%
ACTGACAACGAGACCAGCGT+TGG + chr1_1:3459009-3459028 None:intergenic 55.0%
! GTTGTTTCAGTGGCCCCCTT+TGG - chr1_1:3459666-3459685 Msa0001750:intron 55.0%
GCCCATGCCCTACGTATTTC+AGG + chr1_1:3459784-3459803 None:intergenic 55.0%
CAGGACACTGACCATCCCTA+AGG + chr1_1:3460475-3460494 None:intergenic 55.0%
ACGGTACTTCCCTTGCATGG+AGG + chr1_1:3462706-3462725 None:intergenic 55.0%
GTCATCGTAACCCCATCGGA+TGG + chr1_1:3462846-3462865 None:intergenic 55.0%
! AAGGGCCGCATTTTCCTTGC+TGG - chr1_1:3462885-3462904 Msa0001750:CDS 55.0%
! GTATGCGTCACTGCTGGTCT+AGG - chr1_1:3462975-3462994 Msa0001750:CDS 55.0%
CGCTAGAAGGAGAGGTGGAT+AGG + chr1_1:3463553-3463572 None:intergenic 55.0%
CCATTCAGGCTTCCGCTAGA+AGG + chr1_1:3463566-3463585 None:intergenic 55.0%
CCTTCTAGCGGAAGCCTGAA+TGG - chr1_1:3463563-3463582 Msa0001750:CDS 55.0%
ACAGCTAGGCTTGTGATGGC+TGG + chr1_1:3463597-3463616 None:intergenic 55.0%
AACACGGCCTTCTCCTCCTT+GGG - chr1_1:3463631-3463650 Msa0001750:CDS 55.0%
CTAACACCCCAAGGAGGAGA+AGG + chr1_1:3463641-3463660 None:intergenic 55.0%
! TCTCCTCCTTGGGGTGTTAG+TGG - chr1_1:3463641-3463660 Msa0001750:CDS 55.0%
GTTAGTGGCGGTCTCACCTT+TGG - chr1_1:3463656-3463675 Msa0001750:CDS 55.0%
!! CGGTCTCACCTTTGGAACCA+TGG - chr1_1:3463664-3463683 Msa0001750:CDS 55.0%
AGCACTCAGTCCTCACCATC+AGG - chr1_1:3463821-3463840 Msa0001750:CDS 55.0%
GAACAGGTACGAGGAGTTCC+CGG - chr1_1:3463852-3463871 Msa0001750:CDS 55.0%
AACAGGTACGAGGAGTTCCC+GGG - chr1_1:3463853-3463872 Msa0001750:CDS 55.0%
!! AAAGGGCGTCTGGCAAACTG+TGG - chr1_1:3464026-3464045 Msa0001750:CDS 55.0%
!! AAGGGCGTCTGGCAAACTGT+GGG - chr1_1:3464027-3464046 Msa0001750:CDS 55.0%
TCTGGCAAACTGTGGGCAAG+AGG - chr1_1:3464034-3464053 Msa0001750:CDS 55.0%
CTTCAGCACCATGGGCATGA+TGG - chr1_1:3464102-3464121 Msa0001750:CDS 55.0%
AGCACAAGAACTGCTGCTGG+TGG - chr1_1:3464376-3464395 Msa0001750:CDS 55.0%
!! TGGTGGATTTAGCATGGGCC+AGG - chr1_1:3464393-3464412 Msa0001750:CDS 55.0%
TAGCATGGGCCAGGTTGTTC+AGG - chr1_1:3464402-3464421 Msa0001750:CDS 55.0%
AAGGACTTGCATAGCCCCGA+TGG + chr1_1:3464584-3464603 None:intergenic 55.0%
GCGGTGGAGCCGCAAATAAA+AGG - chr1_1:3464800-3464819 Msa0001750:CDS 55.0%
GCAATATAGGCCCACCTCCA+TGG + chr1_1:3464860-3464879 None:intergenic 55.0%
TGTGTCACAGGTGAGGGCAA+TGG - chr1_1:3464940-3464959 Msa0001750:CDS 55.0%
AGGGTGACCGTCTTGCTACA+AGG - chr1_1:3465119-3465138 Msa0001750:intron 55.0%
GGGTTGCCCGAGCTACTATA+AGG - chr1_1:3465357-3465376 Msa0001750:CDS 55.0%
AGTCACAGCAGCTCTCTCCA+GGG + chr1_1:3465416-3465435 None:intergenic 55.0%
TAGTCACAGCAGCTCTCTCC+AGG + chr1_1:3465417-3465436 None:intergenic 55.0%
AGGAAAAGGAGACTCTCGCG+CGG - chr1_1:3465446-3465465 Msa0001750:CDS 55.0%
CACAGAAATGGAGAAGGGCC+AGG + chr1_1:3465565-3465584 None:intergenic 55.0%
TAAAGGTGACCCCTCACGGA+AGG - chr1_1:3465979-3465998 Msa0001750:intron 55.0%
GACCCCTCACGGAAGGAATT+TGG - chr1_1:3465986-3466005 Msa0001750:intron 55.0%
CTGCACTTGATCCAGCCTCT+CGG - chr1_1:3466035-3466054 Msa0001750:intron 55.0%
ACTTCTCCGATGGGCCAATC+GGG - chr1_1:3466457-3466476 Msa0001750:intron 55.0%
ACGACATAGGTGCTCCCGAT+TGG + chr1_1:3466474-3466493 None:intergenic 55.0%
! CATTGCTAAGACTGGCCGGA+AGG - chr1_1:3466569-3466588 Msa0001750:intron 55.0%
TCCGTCAGTAGAAGGCCTTC+CGG + chr1_1:3466587-3466606 None:intergenic 55.0%
GGCCAAATACCCGCCAATGT+GGG + chr1_1:3466859-3466878 None:intergenic 55.0%
TGGCCAAATACCCGCCAATG+TGG + chr1_1:3466860-3466879 None:intergenic 55.0%
CCATCACCAGGATAAAGGCG+GGG + chr1_1:3468454-3468473 None:intergenic 55.0%
TCTTTCAGTTTGGGCAGGCG+GGG - chr1_1:3468613-3468632 Msa0001750:CDS 55.0%
!! ACCCCTTCTGTTTGGCTCTG+TGG + chr1_1:3469371-3469390 None:intergenic 55.0%
CGCGGTAAACCCCTTCTGTT+TGG + chr1_1:3469379-3469398 None:intergenic 55.0%
CGGCATAGATGACACGTCCA+TGG + chr1_1:3469598-3469617 None:intergenic 55.0%
AACTAGGCTCGAATGACGGC+CGG + chr1_1:3469618-3469637 None:intergenic 55.0%
!!! GGCGATGTAGGGTTTTGGGG+TGG + chr1_1:3458806-3458825 None:intergenic 60.0%
GAGAGAGAGAGAGAGAGCGG+TGG + chr1_1:3458913-3458932 None:intergenic 60.0%
TCAGTGGCCCCCTTTGGTTG+AGG - chr1_1:3459672-3459691 Msa0001750:intron 60.0%
TACAATGCGGCTGGTGGGGA+AGG - chr1_1:3459736-3459755 Msa0001750:intron 60.0%
GCACCCCTTACCTCACAAGC+CGG - chr1_1:3461122-3461141 Msa0001750:intron 60.0%
! GTTGGAGTGTGCTGCTCTGG+AGG - chr1_1:3462759-3462778 Msa0001750:intron 60.0%
!! TGCTGCTCTGGAGGAGCAGA+TGG - chr1_1:3462768-3462787 Msa0001750:intron 60.0%
TGTGGCCATCACGACCAGCA+AGG + chr1_1:3462902-3462921 None:intergenic 60.0%
GCTTCCGCTAGAAGGAGAGG+TGG + chr1_1:3463558-3463577 None:intergenic 60.0%
CAGGCTTCCGCTAGAAGGAG+AGG + chr1_1:3463561-3463580 None:intergenic 60.0%
CAACACGGCCTTCTCCTCCT+TGG - chr1_1:3463630-3463649 Msa0001750:CDS 60.0%
ACACGGCCTTCTCCTCCTTG+GGG - chr1_1:3463632-3463651 Msa0001750:CDS 60.0%
! CCTCCTTGGGGTGTTAGTGG+CGG - chr1_1:3463644-3463663 Msa0001750:CDS 60.0%
AGACCGCCACTAACACCCCA+AGG + chr1_1:3463650-3463669 None:intergenic 60.0%
CGAGGAGTTCCCGGGCATTA+CGG - chr1_1:3463861-3463880 Msa0001750:CDS 60.0%
GAGGAGTTCCCGGGCATTAC+GGG - chr1_1:3463862-3463881 Msa0001750:CDS 60.0%
!!! CAATCGTTTTGGAGCCGGCG+AGG - chr1_1:3464207-3464226 Msa0001750:CDS 60.0%
CATGGGCCAGGTTGTTCAGG+AGG - chr1_1:3464405-3464424 Msa0001750:CDS 60.0%
GCTCAGCCTCCTGAACAACC+TGG + chr1_1:3464414-3464433 None:intergenic 60.0%
! GGTGGTTCTGCATTGGGTGC+TGG - chr1_1:3464718-3464737 Msa0001750:CDS 60.0%
!! GGGTGCTGGTGACCGAAGTA+TGG - chr1_1:3464732-3464751 Msa0001750:CDS 60.0%
CTTCTTAGCCGTGGAAGCCC+TGG - chr1_1:3465396-3465415 Msa0001750:CDS 60.0%
AGCTCTCTCCAGGGCTTCCA+CGG + chr1_1:3465407-3465426 None:intergenic 60.0%
GGAAAAGGAGACTCTCGCGC+GGG - chr1_1:3465447-3465466 Msa0001750:CDS 60.0%
GCCGGAAGGCCTTCTACTGA+CGG - chr1_1:3466583-3466602 Msa0001750:intron 60.0%
ACTCGGAGTTCCAGCGACAC+TGG - chr1_1:3467489-3467508 Msa0001750:intron 60.0%
CTGCCACTGTTCTGCTTGGC+CGG - chr1_1:3468181-3468200 Msa0001750:intron 60.0%
AGACCGGCCAAGCAGAACAG+TGG + chr1_1:3468187-3468206 None:intergenic 60.0%
CTGTTCTGCTTGGCCGGTCT+TGG - chr1_1:3468187-3468206 Msa0001750:intron 60.0%
CCCCGCCTTTATCCTGGTGA+TGG - chr1_1:3468451-3468470 Msa0001750:intron 60.0%
CACAGGATGGGTACAGCCAC+TGG - chr1_1:3468900-3468919 Msa0001750:intron 60.0%
CCGCCACTAACACCCCAAGG+AGG + chr1_1:3463647-3463666 None:intergenic 65.0%
!!! TCGTTTTGGAGCCGGCGAGG+CGG - chr1_1:3464210-3464229 Msa0001750:CDS 65.0%
AAAGGAGACTCTCGCGCGGG+AGG - chr1_1:3465450-3465469 Msa0001750:CDS 65.0%
GCACAGGCTATCGACCCTGC+AGG - chr1_1:3465857-3465876 Msa0001750:intron 65.0%
! GGTGCTCCCGATTGGCCCAT+CGG + chr1_1:3466466-3466485 None:intergenic 65.0%
CTTGGGCCCCGCCTTTATCC+TGG - chr1_1:3468445-3468464 Msa0001750:intron 65.0%
CAGTTTGGGCAGGCGGGGTT+TGG - chr1_1:3468618-3468637 Msa0001750:CDS 65.0%
ACACATCGCAGCCGCCTCGC+CGG + chr1_1:3464224-3464243 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 3458702 3469642 3458702 ID=Msa0001750;Name=Msa0001750
chr1_1 mRNA 3458702 3469642 3458702 ID=Msa0001750-mRNA-1;Parent=Msa0001750;Name=Msa0001750-mRNA-1;_AED=0.05;_eAED=0.05;_QI=237|0.92|0.92|1|0.92|0.85|14|188|1499
chr1_1 exon 3458702 3459007 3458702 ID=Msa0001750-mRNA-1:exon:979;Parent=Msa0001750-mRNA-1
chr1_1 exon 3459332 3459654 3459332 ID=Msa0001750-mRNA-1:exon:978;Parent=Msa0001750-mRNA-1
chr1_1 exon 3459819 3460037 3459819 ID=Msa0001750-mRNA-1:exon:977;Parent=Msa0001750-mRNA-1
chr1_1 exon 3460568 3460925 3460568 ID=Msa0001750-mRNA-1:exon:976;Parent=Msa0001750-mRNA-1
chr1_1 exon 3461718 3461908 3461718 ID=Msa0001750-mRNA-1:exon:975;Parent=Msa0001750-mRNA-1
chr1_1 exon 3462113 3462524 3462113 ID=Msa0001750-mRNA-1:exon:974;Parent=Msa0001750-mRNA-1
chr1_1 exon 3462799 3463046 3462799 ID=Msa0001750-mRNA-1:exon:973;Parent=Msa0001750-mRNA-1
chr1_1 exon 3463182 3463394 3463182 ID=Msa0001750-mRNA-1:exon:972;Parent=Msa0001750-mRNA-1
chr1_1 exon 3463480 3465130 3463480 ID=Msa0001750-mRNA-1:exon:971;Parent=Msa0001750-mRNA-1
chr1_1 exon 3465332 3465642 3465332 ID=Msa0001750-mRNA-1:exon:970;Parent=Msa0001750-mRNA-1
chr1_1 exon 3467740 3467866 3467740 ID=Msa0001750-mRNA-1:exon:969;Parent=Msa0001750-mRNA-1
chr1_1 exon 3468499 3468668 3468499 ID=Msa0001750-mRNA-1:exon:968;Parent=Msa0001750-mRNA-1
chr1_1 exon 3469217 3469398 3469217 ID=Msa0001750-mRNA-1:exon:967;Parent=Msa0001750-mRNA-1
chr1_1 exon 3469429 3469642 3469429 ID=Msa0001750-mRNA-1:exon:966;Parent=Msa0001750-mRNA-1
chr1_1 five_prime_UTR 3469429 3469642 3469429 ID=Msa0001750-mRNA-1:five_prime_utr;Parent=Msa0001750-mRNA-1
chr1_1 five_prime_UTR 3469376 3469398 3469376 ID=Msa0001750-mRNA-1:five_prime_utr;Parent=Msa0001750-mRNA-1
chr1_1 CDS 3469217 3469375 3469217 ID=Msa0001750-mRNA-1:cds;Parent=Msa0001750-mRNA-1
chr1_1 CDS 3468499 3468668 3468499 ID=Msa0001750-mRNA-1:cds;Parent=Msa0001750-mRNA-1
chr1_1 CDS 3467740 3467866 3467740 ID=Msa0001750-mRNA-1:cds;Parent=Msa0001750-mRNA-1
chr1_1 CDS 3465332 3465642 3465332 ID=Msa0001750-mRNA-1:cds;Parent=Msa0001750-mRNA-1
chr1_1 CDS 3463480 3465130 3463480 ID=Msa0001750-mRNA-1:cds;Parent=Msa0001750-mRNA-1
chr1_1 CDS 3463182 3463394 3463182 ID=Msa0001750-mRNA-1:cds;Parent=Msa0001750-mRNA-1
chr1_1 CDS 3462799 3463046 3462799 ID=Msa0001750-mRNA-1:cds;Parent=Msa0001750-mRNA-1
chr1_1 CDS 3462113 3462524 3462113 ID=Msa0001750-mRNA-1:cds;Parent=Msa0001750-mRNA-1
chr1_1 CDS 3461718 3461908 3461718 ID=Msa0001750-mRNA-1:cds;Parent=Msa0001750-mRNA-1
chr1_1 CDS 3460568 3460925 3460568 ID=Msa0001750-mRNA-1:cds;Parent=Msa0001750-mRNA-1
chr1_1 CDS 3459819 3460037 3459819 ID=Msa0001750-mRNA-1:cds;Parent=Msa0001750-mRNA-1
chr1_1 CDS 3459332 3459654 3459332 ID=Msa0001750-mRNA-1:cds;Parent=Msa0001750-mRNA-1
chr1_1 CDS 3458890 3459007 3458890 ID=Msa0001750-mRNA-1:cds;Parent=Msa0001750-mRNA-1
chr1_1 three_prime_UTR 3458702 3458889 3458702 ID=Msa0001750-mRNA-1:three_prime_utr;Parent=Msa0001750-mRNA-1
Gene Sequence

>Msa0001750

ATGTCGTGGGAAGACGAGATTGTGATTCGTGACGTCACCAACGCTGGTCTCGTTGTCAGTGATCGAATTGGCCGTGAAGTTTCTTCTCAGCTCGACCTCGAAGAATCTCTAGAAGCTTCTCGATATGCTAGTCATCCTTATTCTACTCACCCTAGAGAGTGGCCCCCTTTGGTTGAGGTAGCGAATACATGGGAGTTGCCTCCTGTTCTTATTGAAAGATACAATGCGGCTGGTGGGGAAGGAACTGCTTTTTGTGGAATATTTCCTGAAATACGTAGGGCATGGGCGTCAGTTGACAATTCTTTGTTCCTCTGGCGTTTTGATAAGTGGGATGGTCAGTGTCCTGAATATAGTGGCGAGGAACAAGCTATTTGTGCTGTTGGTCTTGCAAAATCAAAGCACGGTGTTTTTGTTGAAGCTATCCAGTATCTTTTAATCTTAGCAACCCCTGTTGAGACCTCCATGCAAGGGAAGTACCGTTACTTACCCCATTCTTTTTATCAGTTAATTTTAGTTGGAGTGTGCTGCTCTGGAGGAGCAGATGGCTCAGATCCATTTGCAGAAGTTTCGTTACAGCCGTTGCCAGATTATACAATACCATCCGATGGGGTTACGATGACAAGTGTGGCATGTACCGATAAGGGCCGCATTTTCCTTGCTGGTCGTGATGGCCACATATATGAGCTTATTTATTCAACTGGCTCAGGATGGCAAAAGCGCTGCAGAAAAGTATGCGTCACTGCTGGTCTAGGAAGTGTAATTTCAAGATGGGTCATACCAAATGTATTCAATTTTGGAGCTGTTGACCCTGTTGTTGAAATGGTTTTTGACAATGAGAGACAGATACTGTATGCACGGACTGAAGAGATGAAGCTTCAGGTTTATGTTCTTGGACCAATTGGTGATGGGCCATTAAAGAAAATTGCTGAAGAAAGGAATCTTGTCAATCACAAAGATGCACATCATGGAGGTAGACAATCAAGTGGATCAAGAGTATCAAGTCGATCACCAAAGCCATCTATTGTTTGCATCTCACCCTTATCTACCCTTGAATCGAAATCGCTACATCTTGTTGCTGTTTTATCAGATGGCAGAAGGATGTACCTATCCACCTCTCCTTCTAGCGGAAGCCTGAATGGATTCAACACCAGCCATCACAAGCCTAGCTGTTTAAAGGTTGTCACAACACGGCCTTCTCCTCCTTGGGGTGTTAGTGGCGGTCTCACCTTTGGAACCATGGCTCTTGCTGGTAGACCTCAAAATGAGGATCTCTCATTGAAAGTCGAGGCAGCCTATTATTCTGCTGGAACTCTTATCCTTTCGGATGCATCACCTCCAACTATGCCTTCACTCCTTGTTTTAAACAGGGATTCGAGCACTCAGTCCTCACCATCAGGTAATCTAGGAACAGGTACGAGGAGTTCCCGGGCATTACGGGAAACTGTATCTTCTTTACCAGTTGAAGGACGAATGCTTTCTGTTGCCGATGTTTTACCTCTACCAGATACTTCAGCTACTGTTCAGTCTCTATACTCAGAAATTGAGTTTGGTGGTTATGAGAGCTCAATGGAATCATGTGAAAGGGCGTCTGGCAAACTGTGGGCAAGAGGAGACCTCTCAACCCAACATATACTGCCAAGGAGGAGGATTGTCATCTTCAGCACCATGGGCATGATGGAAATTGTTTTTAACAGGCCATTAGACATTTTAAGGCGGCTATTAGAGTCCAATTCTCCGAGATCAGTTTTAGAAGATTTCTACAATCGTTTTGGAGCCGGCGAGGCGGCTGCGATGTGTTTAATGCTAGCTTCGAGGATAGTACATTCTGAAAACTTTATCAGCAATGTTATTGCAGAGAAGGCAGCTGAAGCTTTTGAGGATCCAAGACTTGTTGGCATGCCACAACTTGAAGGCAGTAATGCATTATCAAGCACAAGAACTGCTGCTGGTGGATTTAGCATGGGCCAGGTTGTTCAGGAGGCTGAGCCTGTTTTTTCAGGTGCACATGAAGGGCTCTGTTTGTGTTCATCAAGATTACTCTTTCCTCTATGGGAACTACCTGTAATGGTTATAAAAGGAAGTTTAAGTGCTTCAGGCACTTCATTTGAAAATGGGGTAGTTGTATGCAGACTATCCATCGGGGCTATGCAAGTCCTTGAACACAAACTTCGATCTTTAGAAAAATTCTTAAGATCTAGAAGGAACCAGAGGAGAGGACTCTATGGTTGTGTAGCAGGATTAGGAGATGTAAGTGGTTCCATTCTATATGGTGGTGGTTCTGCATTGGGTGCTGGTGACCGAAGTATGGTAAGAACCTTGTTCGGTGCATATTCCAAAAATATGGAGTCTAATGGCGGTGGAGCCGCAAATAAAAGGCAAAGGTTGCCGTACAGTCCTGCAGAATTAGCTGCCATGGAGGTGAGGGCAATGGAGTGCATTAGGCAGTTGCTCCTTAGATCTGGTGAAGCTCTCTTTTTGCTTCAACTTCTCTCACAGCATCATGTCACTCGTCTGATTCAAGGATTTGATGCTAACCTTCAACAAGCCCTAGTTCAGTTAACATTTCATCAACTAGTTTGTTCTGAAGAGGGTGACCGTCTTGCTACAAGGCTTATATCTGCTCTAATGGAGTATTACACTGGTACAGATGGTAGGGGAACTGTAGATGACATTAGTAAGAGATTAAGAGAGGGTTGCCCGAGCTACTATAAGGAGTCTGATTACAAATTCTTCTTAGCCGTGGAAGCCCTGGAGAGAGCTGCTGTGACTATAGATGATGAGGAAAAGGAGACTCTCGCGCGGGAGGCATTGAATGCCTTAAGCAAAGTTCCAGAGTCTGCAGACTTACGTACTGTTTGCAAACGTTTTGAGGATTTAAGGTTTTATGAAGCTGTAGTTTGCTTACCTCTTCAGAAGGCACAGGCTATCGACCCTGCAGGTGATGCTTATAATGATGAAATTGATGCCACAGTCAGAGAACAAGCACTTGCTCAGCGTGAGCAGTGTTATGAAATAATCATCAGTGCTTTGCGGTCTCTTAAAGGTGACCCCTCACGGAAGGAATTTGGCTCTCCCATTGGATCTGCTTCACAATCTGCACTTGATCCAGCCTCTCGGAAAAAGTATATAAGCCAAATTGTTCAGCTGGGTGTCCAATCACCCGACAGAATTTTCCATGAGTATCTTTATCAGGCTATGATAGACTTAGGTCTTGAGAATGAATTGTTGGAGTATGGAGGCCCTGACCTATTGCCCTTCTTAAAAAGTGCTGGTCGTACACCCATACATGAGGTTCGTGCTGTGACTGCAACAACTTCTCCGATGGGCCAATCGGGAGCACCTATGTCGTCCAATCAAGTCAAGTACTTTGAACTTTTGGCAAGGTATTACGTGTTGAAGCGGCAACACATGCTTGCTGCTCATGCATTGCTAAGACTGGCCGGAAGGCCTTCTACTGACGGAGTTCCTACTCTTGAGCAGAGGTGTCAATACCTAAGCAATGCAGTTTTACAGGCAAAGAATGCAACAAATAGCGATGGGTTGGTTAGTTCTACTCGGAGTTCCAGCGACACTGGATTACTAGATATGCTTGAAGGGAAGCTTGCTGTTCTTCGGTTTCAGATAAAAATCAAAGAGGAACTAGAGCATATGGCTTCCAGTTCTGAGGTTTTACACAGCACATCCAATTCTGTTCAAAATGGTTTAGTCTCTGATGCCAGTCCAACTGTTGATGCCAATTTTGCAAATGCAACACGCGAGAAAGCCAAAGAGCTATCATCAGATTTGAAGAGCATAACACAGTTATATAATGAATATGCTGTTCCCTTTAAACTCTGGGAGACATGCCTGGAGATGCTGTACTTTGCTAACTATTCTGGTGATAGTGACAGTAGCATTGTCAGAGAGACATGGGCTCGACTTATAGATCAAGCTATTTCAGGAGGTGGCATTGCTGAAGCTTGCTCTGTGCTAAAGAGACTTGGGCCCCGCCTTTATCCTGGTGATGGAACTGTTTTTCAGCTTGACATTATTTGTCTTCACCTTGAGAAAGCTGCACTGGAGAGATTAAATACAGGGATTGAATCCGTTGGAGATGAAGATGTTGCGAGAGCCCTTGTTTCTGCTTGTAAGGGTGCAGCAGAACCTGTATTGAACGCATATGATCAATTGTTATCAAATGGGGCAATTTTGCCATCCCCAAATCTTAGATTACGGATGCTGAGATCTGTTCTAGTGGTACTTCGTGAGTGGGCTATGTCTATATATTCACACAGGATGGGTACAGCCACTGGTTCTTCCATAATAATAGGCGGTGGATTCTCATTGGAACGTACAGTTGCTAGCCAAGGAATTAGGGACAAAATCACAAGTGTAGCAAACAGGTATATGACTGAAGTACGGAGGTTAGCCCTTCCACAGAGCCAAACAGAAGGGGTTTACCGCGGCTTTAAAGAACTTGAAGAATCTCTCATAAGTCCTCATTCATTTGATCGATTTTGA
Protein sequence

>Msa0001750

MSWEDEIVIRDVTNAGLVVSDRIGREVSSQLDLEESLEASRYASHPYSTHPREWPPLVEVANTWELPPVLIERYNAAGGEGTAFCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYSGEEQAICAVGLAKSKHGVFVEAIQYLLILATPVETSMQGKYRYLPHSFYQLILVGVCCSGGADGSDPFAEVSLQPLPDYTIPSDGVTMTSVACTDKGRIFLAGRDGHIYELIYSTGSGWQKRCRKVCVTAGLGSVISRWVIPNVFNFGAVDPVVEMVFDNERQILYARTEEMKLQVYVLGPIGDGPLKKIAEERNLVNHKDAHHGGRQSSGSRVSSRSPKPSIVCISPLSTLESKSLHLVAVLSDGRRMYLSTSPSSGSLNGFNTSHHKPSCLKVVTTRPSPPWGVSGGLTFGTMALAGRPQNEDLSLKVEAAYYSAGTLILSDASPPTMPSLLVLNRDSSTQSSPSGNLGTGTRSSRALRETVSSLPVEGRMLSVADVLPLPDTSATVQSLYSEIEFGGYESSMESCERASGKLWARGDLSTQHILPRRRIVIFSTMGMMEIVFNRPLDILRRLLESNSPRSVLEDFYNRFGAGEAAAMCLMLASRIVHSENFISNVIAEKAAEAFEDPRLVGMPQLEGSNALSSTRTAAGGFSMGQVVQEAEPVFSGAHEGLCLCSSRLLFPLWELPVMVIKGSLSASGTSFENGVVVCRLSIGAMQVLEHKLRSLEKFLRSRRNQRRGLYGCVAGLGDVSGSILYGGGSALGAGDRSMVRTLFGAYSKNMESNGGGAANKRQRLPYSPAELAAMEVRAMECIRQLLLRSGEALFLLQLLSQHHVTRLIQGFDANLQQALVQLTFHQLVCSEEGDRLATRLISALMEYYTGTDGRGTVDDISKRLREGCPSYYKESDYKFFLAVEALERAAVTIDDEEKETLAREALNALSKVPESADLRTVCKRFEDLRFYEAVVCLPLQKAQAIDPAGDAYNDEIDATVREQALAQREQCYEIIISALRSLKGDPSRKEFGSPIGSASQSALDPASRKKYISQIVQLGVQSPDRIFHEYLYQAMIDLGLENELLEYGGPDLLPFLKSAGRTPIHEVRAVTATTSPMGQSGAPMSSNQVKYFELLARYYVLKRQHMLAAHALLRLAGRPSTDGVPTLEQRCQYLSNAVLQAKNATNSDGLVSSTRSSSDTGLLDMLEGKLAVLRFQIKIKEELEHMASSSEVLHSTSNSVQNGLVSDASPTVDANFANATREKAKELSSDLKSITQLYNEYAVPFKLWETCLEMLYFANYSGDSDSSIVRETWARLIDQAISGGGIAEACSVLKRLGPRLYPGDGTVFQLDIICLHLEKAALERLNTGIESVGDEDVARALVSACKGAAEPVLNAYDQLLSNGAILPSPNLRLRMLRSVLVVLREWAMSIYSHRMGTATGSSIIIGGGFSLERTVASQGIRDKITSVANRYMTEVRRLALPQSQTEGVYRGFKELEESLISPHSFDRF*